|
Name |
Accession |
Description |
Interval |
E-value |
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
341-868 |
0e+00 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 762.30 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 341 QVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGP-- 418
Cdd:pfam15070 1 QLMESLKQLQTERDQYAENLKEEGAVWQQKMQQLSEQVRTLREEKERSVSQVQELETSLAELKNQAAVPPAEEEQPPAgp 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 419 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRA 498
Cdd:pfam15070 81 SEEEQRLQEEAEQLQKELEALAGQLQAQVQDNEQLSRLNQEQEQRLLELERAAERWGEQAEDRKQILEDMQSDRATISRA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 499 LSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 578
Cdd:pfam15070 161 LSQNRELKEQLAELQNGFVKLTNENMELTSALQSEQHVKKELAKKLGQLQEELGELKETLELKSQEAQSLQEQRDQYLAH 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 579 LQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEG 658
Cdd:pfam15070 241 LQQYVAAYQQLASEKEELHKQYLLQTQLMDRLQHEEVQGKVAAEMARQELQETQERLEALTQQNQQLQAQLSLLANPGEG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 659 DGLDREEEEDEeeeeeeavaVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKE 738
Cdd:pfam15070 321 DGLESEEEEEE---------APRPSLSIPEDFESREAMVAFFNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPAQEE 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 739 PEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLK 818
Cdd:pfam15070 392 PEHEAHAPGTGGDSVPVEVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAILK 471
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|
gi 1955630630 819 ERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNEWHGRFLAAAQ 868
Cdd:pfam15070 472 QRHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGERNEWYGKYLAAAQ 521
|
|
| GM130_C |
pfam19046 |
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 ... |
913-958 |
3.12e-26 |
|
GM130 C-terminal binding motif; This entry represents the C-terminal motif from the GM130 protein that is bound by the GRASP65 PDZ domain pfam04495.
Pssm-ID: 465957 Cd Length: 46 Bit Score: 101.69 E-value: 3.12e-26
10 20 30 40
....*....|....*....|....*....|....*....|....*.
gi 1955630630 913 SPRDNPTAQQIMQLLREMQNPRERPGLGSNPCIPFFYRADENDEVK 958
Cdd:pfam19046 1 SPPENPTAQQIMQLLPEIQNPQEHPGLGSNPCIPFFYRADENDEVK 46
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
225-858 |
1.12e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 88.46 E-value: 1.12e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 225 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYKNTQsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEM 304
Cdd:COG1196 195 LGELERQLEPLERQAEKAERY-RELKEELKELEAELLLLKL--RELEAELEELEAELEELEAELEELEAELAELEAELEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 305 TELLLQQFSSRCEApdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnlkgESAMWRQRMQQMSEQVHTLREE 384
Cdd:COG1196 272 LRLELEELELELEE--AQAEEYELLAELARLEQDIARLEERRRELEERLEELEE----ELAELEEELEELEEELEELEEE 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 385 KECSMSRVQELETSLAELRnqmaeppppeppagpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNreqeerl 464
Cdd:COG1196 346 LEEAEEELEEAEAELAEAE---------------EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE------- 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 465 leleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 544
Cdd:COG1196 404 -----------ELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 545 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 624
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIV 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 625 RQELQETQERLEAATQQNQQLRAQLSlmahpgegdgLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAmvafFNSAV 704
Cdd:COG1196 553 VEDDEVAAAAIEYLKAAKAGRATFLP----------LDKIRARAALAAALARGAIGAAVDLVASDLREADA----RYYVL 618
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 705 ASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETH------RALQGAMEKLQSRFMELMQE 778
Cdd:COG1196 619 GDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAalleaeAELEELAERLAEEELELEEA 698
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 779 KADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRLVGDRNE 858
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
161-874 |
5.31e-15 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 80.10 E-value: 5.31e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 161 EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQK 240
Cdd:TIGR02168 233 RLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 241 KADRYNKELTKERDALRlelykntQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfsSRCEAPD 320
Cdd:TIGR02168 313 NLERQLEELEAQLEELE-------SKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE--LEEQLET 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 321 ANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKG-ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSL 399
Cdd:TIGR02168 384 LRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEElLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 400 AELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELW 474
Cdd:TIGR02168 464 EELREELEEAEQALDAAERELAQLQarldsLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 475 G--------EQAEARRQILETM-QND--RTTI----SRALSQNRELKEQLAELQSGFVKLTNE----------------- 522
Cdd:TIGR02168 544 GgrlqavvvENLNAAKKAIAFLkQNElgRVTFlpldSIKGTEIQGNDREILKNIEGFLGVAKDlvkfdpklrkalsyllg 623
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 523 NMEITSALQSEQHVKRELGKK--LGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQL 600
Cdd:TIGR02168 624 GVLVVDDLDNALELAKKLRPGyrIVTLDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAEL 703
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 601 LlqtQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVp 680
Cdd:TIGR02168 704 R---KELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE- 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 681 qpmpsIPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAaapapgtggdsvCGETHRA 760
Cdd:TIGR02168 780 -----AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAA------------TERRLED 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 761 LQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKV 840
Cdd:TIGR02168 843 LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELRE 922
|
730 740 750
....*....|....*....|....*....|....
gi 1955630630 841 KLLELQELVLRLVGDRNEWHGRFLAAAQNPADEP 874
Cdd:TIGR02168 923 KLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEA 956
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
225-552 |
1.31e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.56 E-value: 1.31e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 225 VGELERALSAVSTQQKKADRYnKELTKERDALRLELYknTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEM 304
Cdd:TIGR02168 195 LNELERQLKSLERQAEKAERY-KELKAELRELELALL--VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEE 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 305 TELLLQQ------------FSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesAMWRQRMQ 372
Cdd:TIGR02168 272 LRLEVSEleeeieelqkelYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEEL----AELEEKLE 347
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 373 QMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEG 452
Cdd:TIGR02168 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQ--IASLNNEIERLEARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 453 LSRLNREQEERLLELERAAELWG-----EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEIT 527
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEEleelqEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFS 505
|
330 340
....*....|....*....|....*
gi 1955630630 528 SALQSEQHVKRELGKKLGELQEKLS 552
Cdd:TIGR02168 506 EGVKALLKNQSGLSGILGVLSELIS 530
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
171-720 |
3.38e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 77.28 E-value: 3.38e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 171 ALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELT 250
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 251 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEApdANQQLQQAME 330
Cdd:COG1196 316 ERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEE--LAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 331 ERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPP 410
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEEL----EEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 411 PPEPPAGPSEVEQQLQAEAEHLRKELEgLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEA--RRQILETM 488
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLL-LEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAalEAALAAAL 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 489 QNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSL 568
Cdd:COG1196 549 QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLV 628
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 569 QQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQ 648
Cdd:COG1196 629 AARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERE 708
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 649 LSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNsaVASAEEEQARLRGQLKE 720
Cdd:COG1196 709 LAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPD--LEELERELERLEREIEA 778
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
160-637 |
1.13e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 1.13e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 160 EEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQ 239
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 240 KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAP 319
Cdd:COG1196 389 LEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEA--ELEEEEEALLELLA 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 320 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQVHTLREEKECSMSRVQELETSL 399
Cdd:COG1196 467 ELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKA--ALLLAGLRGLAGAVAVLIGVEAAYEAALEAAL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 400 AELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE 479
Cdd:COG1196 545 AAALQN-----------IVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADA 613
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 480 ARRQILETMQ-------NDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLS 552
Cdd:COG1196 614 RYYVLGDTLLgrtlvaaRLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 553 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQ 632
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLE 773
|
....*
gi 1955630630 633 ERLEA 637
Cdd:COG1196 774 REIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
294-641 |
5.25e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 70.09 E-value: 5.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 294 NLEELQKKLEMTELLLQqfssrcEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQ 373
Cdd:TIGR02168 678 EIEELEEKIEELEEKIA------ELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 374 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPppeppagpsEVEQQLQAEAEHLRKELEGLAGQLQAqvqdnegL 453
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELE---------AQIEQLKEELKALREALDELRAELTL-------L 815
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 454 SRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSqnrELKEQLAELQSGFVKLTNE-------NMEI 526
Cdd:TIGR02168 816 NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE---ELEELIEELESELEALLNErasleeaLALL 892
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 527 TSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHL-QQYVAAYQQLTSEKEVLHNQLLLQTQ 605
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARR 972
|
330 340 350
....*....|....*....|....*....|....*.
gi 1955630630 606 LVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 641
Cdd:TIGR02168 973 RLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-657 |
7.45e-12 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 69.41 E-value: 7.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 225 VGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEM 304
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEEL-------EAELEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 305 TELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREE 384
Cdd:COG4717 121 LEKLLQLLPLYQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 385 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERL 464
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 465 LELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQHVKRELgKKL 544
Cdd:COG4717 281 LVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALG---LPPDLSPEELLELLDRIEELQELL-REA 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 545 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYvAAYQQLTSEKEVLHNQLLLQTQLVDQL--QQQEAQGKAVAE 622
Cdd:COG4717 357 EELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-EEYQELKEELEELEEQLEELLGELEELleALDEEELEEELE 435
|
410 420 430
....*....|....*....|....*....|....*
gi 1955630630 623 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGE 657
Cdd:COG4717 436 ELEEELEELEEELEELREELAELEAELEQLEEDGE 470
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
171-790 |
6.70e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 6.70e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 171 ALREQLQVHiqTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELT 250
Cdd:COG1196 217 ELKEELKEL--EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 251 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrceapdANQQLQQAME 330
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEE---------AEAELAEAEE 365
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 331 ERAQLEAhlgQVMESVRQLQMERDKYAENLKGESAMwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmAEPP 410
Cdd:COG1196 366 ALLEAEA---ELAEAEEELEELAEELLEALRAAAEL-AAQLEELEEAEEALLERLERLEEELEELEEALAELEEE-EEEE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 411 PPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQN 490
Cdd:COG1196 441 EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLR 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 491 DRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQekLSELKETVELKSQEAQSLQQ 570
Cdd:COG1196 521 GLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLP--LDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 571 QRDQYLGHLQQYVAAYQQltsekeVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLS 650
Cdd:COG1196 599 AAVDLVASDLREADARYY------VLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLA 672
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 651 LMAHPGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVrcRRLAH 730
Cdd:COG1196 673 ALLEAEAELEELAERLAEEELELEEAL----------LAEEEEERELAEAEEERLEEELEEEALEEQLEAERE--ELLEE 740
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630630 731 LLASAQKEPEAAAPAPGTGGD-SVCGETHRALQGAMEKL--------------QSRFMELMQEKADLKERVEELE 790
Cdd:COG1196 741 LLEEEELLEEEALEELPEPPDlEELERELERLEREIEALgpvnllaieeyeelEERYDFLSEQREDLEEARETLE 815
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
125-405 |
2.24e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 2.24e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 125 ESLRQLSQQLNGLVCESATCVNGEGPASSANLKDLE---EKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQ 201
Cdd:TIGR02168 723 ELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEleaEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALR 802
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 202 HAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQqkkadryNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKL 281
Cdd:TIGR02168 803 EALDELRAELTLLNEEAANLRERLESLERRIAATERR-------LEDLEEQIEELSEDIESLAAEIEELEELIEELESEL 875
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 282 RVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGqvmesvrQLQMERDKYAENLK 361
Cdd:TIGR02168 876 EALLNERASLEEALALLRSELE--ELSEELRELESKRSELRRELEELREKLAQLELRLE-------GLEVRIDNLQERLS 946
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1955630630 362 GESAMwrqrMQQMSEQVHTLREEKEcsmsrvQELETSLAELRNQ 405
Cdd:TIGR02168 947 EEYSL----TLEEAEALENKIEDDE------EEARRRLKRLENK 980
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
128-647 |
2.42e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 54.66 E-value: 2.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 128 RQLSQQLNGLVCESATcvngegpaSSANLKDLEEKKE-CHQKQGALREQLQVHIQTIgilvSEKAELQTALAHTQHAARQ 206
Cdd:PRK02224 202 KDLHERLNGLESELAE--------LDEEIERYEEQREqARETRDEADEVLEEHEERR----EELETLEAEIEDLRETIAE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 207 KEGESEDLASRLQYSRRRVGELERALSAV-------STQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEE 279
Cdd:PRK02224 270 TEREREELAEEVRDLRERLEELEEERDDLlaeagldDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLRE 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 280 KLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEN 359
Cdd:PRK02224 350 DADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEE--EIEELRERFGDAPVDLGNAEDFLEELREERDELRER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 360 LKGESAMwRQRMQQMSEQVHTLREEKEC------------------SMSRVQELETSLAELRNQMAEPPPP-EPPAGPSE 420
Cdd:PRK02224 428 EAELEAT-LRTARERVEEAEALLEAGKCpecgqpvegsphvetieeDRERVEELEAELEDLEEEVEEVEERlERAEDLVE 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 421 VEQQLQAEAEHlRKELEGLAGQLQAQV-QDNEGLSRLNreqeERLLELERAAELWGEQAEARRQILETMQNDRTTISRAL 499
Cdd:PRK02224 507 AEDRIERLEER-REDLEELIAERRETIeEKRERAEELR----ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 500 SQNRELKEQLAELQSGFVKLTNENMEITS---ALQSEQHVKRELGKKLGELQEKLSELKETV-ELKSQEAQSLQQQRDQY 575
Cdd:PRK02224 582 AELKERIESLERIRTLLAAIADAEDEIERlreKREALAELNDERRERLAEKRERKRELEAEFdEARIEEAREDKERAEEY 661
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 576 LGHLQQYVaayQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemaRQELQETQERLEAATQQNQQLRA 647
Cdd:PRK02224 662 LEQVEEKL---DELREERDDLQAEIGAVENELEELEELRER--------REALENRVEALEALYDEAEELES 722
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
392-791 |
3.58e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 3.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 392 VQELETSLAELRNQMAEPPPPeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAA 471
Cdd:TIGR02168 672 ILERRREIEELEEKIEELEEK---------IAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 472 ELWGEQAEARRQILETMQNDRTTISRALSQNR----ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGEL 547
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEeelaEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 548 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQgkavaemARQE 627
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAL-------LRSE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 628 LQETQERLEAATQQNQQLRAQLSLMahpgegdgldreeeedeeeeeeeavavpqpmpsipedlesreamvaffNSAVASA 707
Cdd:TIGR02168 896 LEELSEELRELESKRSELRRELEEL------------------------------------------------REKLAQL 927
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 708 EEEQARLRGQLKEQRVRCRRLAHLLAsaqkEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQSRFMELMQEKADLKERVE 787
Cdd:TIGR02168 928 ELRLEGLEVRIDNLQERLSEEYSLTL----EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYD 1003
|
....
gi 1955630630 788 ELEH 791
Cdd:TIGR02168 1004 FLTA 1007
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
160-847 |
5.32e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 5.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 160 EEKKECHQKQgALREQLQVHIQTIGilVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQ 239
Cdd:TIGR02169 262 ELEKRLEEIE-QLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 240 KKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEmtelllqqfSSRCEAP 319
Cdd:TIGR02169 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN---------ELKRELD 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 320 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGEsamwRQRMQQMSEQVHTLREEKECSMSRVQELETSL 399
Cdd:TIGR02169 410 RLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQ----EWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 400 AELRNQMAEPPPPEPPAGPSEVEQqlQAEAEHLRKELEGLAGQ----------------------LQAQVQDNEG----- 452
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGG--RAVEEVLKASIQGVHGTvaqlgsvgeryataievaagnrLNNVVVEDDAvakea 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 453 --------LSR-----LNREQEERLLELERAAELWGEQA-----------EARRQILETmqndrTTISRALSQNRELKEQ 508
Cdd:TIGR02169 564 iellkrrkAGRatflpLNKMRDERRDLSILSEDGVIGFAvdlvefdpkyePAFKYVFGD-----TLVVEDIEAARRLMGK 638
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 509 LAelqsgFVKLTNENME----ITS---ALQSEQHVKRELGKKLGELQEKLSELKetvelksQEAQSLQQQRDQYLGHLQQ 581
Cdd:TIGR02169 639 YR-----MVTLEGELFEksgaMTGgsrAPRGGILFSRSEPAELQRLRERLEGLK-------RELSSLQSELRRIENRLDE 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 582 YVAAYQQLTSEKEVLHNQLllqtqlvDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMahpgegdgl 661
Cdd:TIGR02169 707 LSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEL--------- 770
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 662 dreeeEDEEEEEEEAVavpqpmpsipEDLESREAMVAF--FNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEP 739
Cdd:TIGR02169 771 -----EEDLHKLEEAL----------NDLEARLSHSRIpeIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI 835
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 740 EAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKE 819
Cdd:TIGR02169 836 QELQ------------EQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
730 740
....*....|....*....|....*...
gi 1955630630 820 RHREKEEYISRLAQDKEEMKVKLLELQE 847
Cdd:TIGR02169 904 KIEELEAQIEKKRKRLSELKAKLEALEE 931
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
240-648 |
8.36e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 53.10 E-value: 8.36e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 240 KKADRYNKELTKERDalrlELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAP 319
Cdd:TIGR04523 138 KNIDKFLTEIKKKEK----ELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKN 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 320 DA---------------NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREE 384
Cdd:TIGR04523 214 KSlesqiselkkqnnqlKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQL--------SEKQKELEQNNKKIKE 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 385 KEcsmSRVQELETSLAELRNQmaeppppeppaGPSEVEQQLQAEAEHLRKELEGLAGQLqaqVQDNEGLSRLNreqeerl 464
Cdd:TIGR04523 286 LE---KQLNQLKSEISDLNNQ-----------KEQDWNKELKSELKNQEKKLEEIQNQI---SQNNKIISQLN------- 341
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 465 leleraaelwgeqaearrqilETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKL 544
Cdd:TIGR04523 342 ---------------------EQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKI 400
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 545 GELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMA 624
Cdd:TIGR04523 401 QNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKI 480
|
410 420
....*....|....*....|....
gi 1955630630 625 RQELQETQERLEAATQQNQQLRAQ 648
Cdd:TIGR04523 481 KQNLEQKQKELKSKEKELKKLNEE 504
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
190-651 |
9.68e-07 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.99 E-value: 9.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 190 KAELQTALahtQHAARQKEGESEDLASrlqysrrrVGELERALSAVstqqKKADRYNKELtkerDALRLELyknTQSNED 269
Cdd:PRK11281 38 EADVQAQL---DALNKQKLLEAEDKLV--------QQDLEQTLALL----DKIDRQKEET----EQLKQQL---AQAPAK 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 270 LKQEKSELE--EKLRVLVTEKAGMQLNLEELQKKLEmtELLLQQFSSRCEAPDANQQL--QQAMEERAQLEahlgqvmes 345
Cdd:PRK11281 96 LRQAQAELEalKDDNDEETRETLSTLSLRQLESRLA--QTLDQLQNAQNDLAEYNSQLvsLQTQPERAQAA--------- 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 346 vrqlqmerdkYAENLkgesamwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEppagpsEVEQQ 424
Cdd:PRK11281 165 ----------LYANS--------QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL------EGNTQ 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 425 LQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtTISRALSQNRE 504
Cdd:PRK11281 221 LQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--LVAQELEINLQ 289
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 505 LKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELKSQEAQ----- 566
Cdd:PRK11281 290 LSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLADRIADlrleq 369
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 567 -SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLLlqtQLVDqlqqqeaqgkavaemARQELQEtqerleaatQQNQ 643
Cdd:PRK11281 370 fEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALL---QLLD---------------ERRELLD---------QLNK 421
|
....*...
gi 1955630630 644 QLRAQLSL 651
Cdd:PRK11281 422 QLNNQLNL 429
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
262-641 |
1.03e-06 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 52.99 E-value: 1.03e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 262 KNTQSNEDLKQEKSELEEKLRvlvtekaGMQLNLEELQKKL------EMTELLLQQFSSRCEapDANQQLQQAMEERAQL 335
Cdd:PRK11281 77 RQKEETEQLKQQLAQAPAKLR-------QAQAELEALKDDNdeetreTLSTLSLRQLESRLA--QTLDQLQNAQNDLAEY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 336 EAHLgqvmeSVRQLQMERdkyAENLKGESAmwrQRMQQMSEQVHTLREEKE-CSMSRVQELETSLAELRNQMAEPPPPEp 414
Cdd:PRK11281 148 NSQL-----VSLQTQPER---AQAALYANS---QRLQQIRNLLKGGKVGGKaLRPSQRVLLQAEQALLNAQNDLQRKSL- 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 415 pagpsEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrLNREQEERLLELEraaelwgEQAEARRQILETMQNDrtT 494
Cdd:PRK11281 216 -----EGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEA--INSKRLTLSEKTV-------QEAQSQDEAARIQANP--L 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 495 ISRALSQNRELKEQLAELQSGFVKLTNENMEIT----SALQSEQHVKRE---------LGKKLGELQEKLSELKETVELK 561
Cdd:PRK11281 280 VAQELEINLQLSQRLLKATEKLNTLTQQNLRVKnwldRLTQSERNIKEQisvlkgsllLSRILYQQQQALPSADLIEGLA 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 562 SQEAQ------SLQQQRDQyLGHLQQYVAAYQQLTSEK--EVLHNQLL--------LQTQLVDQLQQQEAQGKAVaEMAR 625
Cdd:PRK11281 360 DRIADlrleqfEINQQRDA-LFQPDAYIDKLEAGHKSEvtDEVRDALLqllderreLLDQLNKQLNNQLNLAINL-QLNQ 437
|
410
....*....|....*.
gi 1955630630 626 QELQETQERLEAATQQ 641
Cdd:PRK11281 438 QQLLSVSDSLQSTLTQ 453
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
222-405 |
1.64e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 52.22 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 222 RRRVGELERALSAVSTQQKKADRYNkelTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 301
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLA---ELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 302 LEMTELLLQQFSSRCEApDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTL 381
Cdd:COG4913 325 LDELEAQIRGNGGDRLE-QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....
gi 1955630630 382 REEKECSMSRVQELETSLAELRNQ 405
Cdd:COG4913 404 EEALAEAEAALRDLRRELRELEAE 427
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
382-820 |
2.25e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.25e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 382 REEKECSMSRVQELETSLAELRNQMaeppppeppagpseveQQLQAEAEHLRKELEglagqLQAQVQDNEGLSRLNreqe 461
Cdd:TIGR02169 176 LEELEEVEENIERLDLIIDEKRQQL----------------ERLRREREKAERYQA-----LLKEKREYEGYELLK---- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 462 erlleleraaelwgEQAEARRQIlETMQNDRTTISRALSQNRELKEQLA-ELQSGFVKLTNENMEITSALQSEQhvkREL 540
Cdd:TIGR02169 231 --------------EKEALERQK-EAIERQLASLEEELEKLTEEISELEkRLEEIEQLLEELNKKIKDLGEEEQ---LRV 292
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 541 GKKLGELQEKLSELKETVELKSQEAQSLQQQRdqylghlQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAV 620
Cdd:TIGR02169 293 KEKIGELEAEIASLERSIAEKERELEDAEERL-------AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 621 AEMARQELQETQERLEAATQQNQQLRAQLSLMAHpgEGDGLDREEEEDEeeeeeeavavpqpmpsipEDLESREAMVAFF 700
Cdd:TIGR02169 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKR--EINELKRELDRLQ------------------EELQRLSEELADL 425
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 701 NSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEpeaaapapgtggdsvcgethralqgaMEKLQSRFMELMQEKA 780
Cdd:TIGR02169 426 NAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD--------------------------LSKYEQELYDLKEEYD 479
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630630 781 DLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKER 820
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKAS 519
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
375-798 |
7.32e-06 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 50.34 E-value: 7.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 375 SEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQLQ---AQVQDNE 451
Cdd:PRK04863 285 LEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAE-----SDLEQDYQAASDHLNLVQTALRQQEKierYQADLEE 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 452 GLSRLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNMEITSALQ 531
Cdd:PRK04863 360 LEERLE------------------EQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQAL------DVQQTRAIQ 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 532 SEQHVKR-ELGKKLGEL----QEKLSELKETVELKSQEAQ----SLQQQRDQYLGHLQQYVAAYQqltsekevlhnqllL 602
Cdd:PRK04863 416 YQQAVQAlERAKQLCGLpdltADNAEDWLEEFQAKEQEATeellSLEQKLSVAQAAHSQFEQAYQ--------------L 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 603 QTQLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSLMAHpgegdglDREEEEDEEEEEEEAVAVPQP 682
Cdd:PRK04863 482 VRKIAGEVSRSEAWDVA------RELLRRLREQRHLAEQLQQLRMRLSELEQ-------RLRQQQRAERLLAEFCKRLGK 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 683 MPSIPEDLES----REAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcgETH 758
Cdd:PRK04863 549 NLDDEDELEQlqeeLEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEF--EDS 626
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 1955630630 759 RALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSG 798
Cdd:PRK04863 627 QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQ 666
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
419-649 |
9.62e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 49.63 E-value: 9.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 419 SEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSrlnreqeerlleleraaelwgeQAEARRQILETMQNDRTTISRA 498
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKNGLVD----------------------LSEEAKLLLQQLSELESQLAEA 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 499 LSQNRELKEQLAELQSgfvKLTNENMEITSALQSEqhVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH 578
Cdd:COG3206 232 RAELAEAEARLAALRA---QLGSGPDALPELLQSP--VIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ 306
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 579 LQQYVA-AYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQL 649
Cdd:COG3206 307 LQQEAQrILASLEAELEALQARE---ASLQAQLAQLEARLAELPE-LEAELRRLEREVEVARELYESLLQRL 374
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
157-851 |
1.26e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 157 KDLEEKKECHQKQGALREQLQVHIQTigilvsEKAELQTALAHTQHAARQKEGESEDLASRLQYSrrrVGELERALSAVS 236
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQT------KLQEMQMERDAMADIRRRESQSQEDLRNQLQNT---VHELEAAKCLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 237 TQQKKADRYNKELTK---ERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFs 313
Cdd:pfam15921 163 DMLEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFRSLGSAISKILRELDTEISYLKGRIF- 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 314 srceaPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECS----M 389
Cdd:pfam15921 242 -----PVEDQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmyM 316
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 390 SRVQELETSLAELRNQMAEPPPPEPPAGPsEVEQQL------QAEAEHLRKELEGLAGQLQAQVQdnEGLSRLNREQEER 463
Cdd:pfam15921 317 RQLSDLESTVSQLRSELREAKRMYEDKIE-ELEKQLvlanseLTEARTERDQFSQESGNLDDQLQ--KLLADLHKREKEL 393
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 464 LLELERAAELWGEQAEARRQI--LETMQNDRTT-ISRALSQNRELKEQLA---ELQSGFVKLTNENMEITSALQSEQHVK 537
Cdd:pfam15921 394 SLEKEQNKRLWDRDTGNSITIdhLRRELDDRNMeVQRLEALLKAMKSECQgqmERQMAAIQGKNESLEKVSSLTAQLEST 473
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 538 RELGKKLGE----------------------LQEK----------LSELKETVELKSQEAQSLQQQRDqYLGHLQQYVAA 585
Cdd:pfam15921 474 KEMLRKVVEeltakkmtlessertvsdltasLQEKeraieatnaeITKLRSRVDLKLQELQHLKNEGD-HLRNVQTECEA 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 586 YQQLTSEK----EVLHNQLLLQTQLVDQ-------LQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAh 654
Cdd:pfam15921 553 LKLQMAEKdkviEILRQQIENMTQLVGQhgrtagaMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLE- 631
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 655 pgegdgLDREEEEDEEEEEEEAVA-VPQPMPSIPEDLESREAMVaffNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLA 733
Cdd:pfam15921 632 ------LEKVKLVNAGSERLRAVKdIKQERDQLLNEVKTSRNEL---NSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLK 702
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 734 SAQKEPEAA----APAPGTGGDSV-----CGETHRALQGAMEKLQSRFMELMQ-------EKADLKERVEELEHRCIQLS 797
Cdd:pfam15921 703 SAQSELEQTrntlKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEEamtnankEKHFLKEEKNKLSQELSTVA 782
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....
gi 1955630630 798 GETDTIGEYIALYQSQRAVLKERHREKEeyisrLAQDKEEMkvKLLELQELVLR 851
Cdd:pfam15921 783 TEKNKMAGELEVLRSQERRLKEKVANME-----VALDKASL--QFAECQDIIQR 829
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
160-636 |
3.68e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.68e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 160 EEKKECHQKQGALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVstqq 239
Cdd:COG4717 53 KEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLL---- 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 240 kkadrynkELTKERDALRLELYKNTQSNEDLKQEKSELEEklrvLVTEKAGMQLNLEELQKKLEmTELLLQQFSSRCEAP 319
Cdd:COG4717 129 --------PLYQELEALEAELAELPERLEELEERLEELRE----LEEELEELEAELAELQEELE-ELLEQLSLATEEELQ 195
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 320 DANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAmwRQRMQQMSEQ------VHTLREEKECSMSRVQ 393
Cdd:COG4717 196 DLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAAL--EERLKEARLLlliaaaLLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 394 ELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLA-GQLQAQVQDNEGLSRLNREQEERLLELERAAE 472
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEElEELLAALGLPPDLSPEELLELLDRIEELQELL 353
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 473 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQS---------EQHVKRELGKK 543
Cdd:COG4717 354 REAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEEllgeleellEALDEEELEEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 544 LGELQEKLSELKETVELKSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnqlllqtqlvdqlqQQEAQGKAVAEM 623
Cdd:COG4717 434 LEELEEELEELEEELEELREELAELEAELEQ-LEEDGELAELLQELEELKAEL---------------RELAEEWAALKL 497
|
490
....*....|...
gi 1955630630 624 ARQELQETQERLE 636
Cdd:COG4717 498 ALELLEEAREEYR 510
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
275-629 |
3.95e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 3.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 275 SELEEKLRVLVTEKAgMQLNLEELQKKL---EMTELLLqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQM 351
Cdd:TIGR02169 194 DEKRQQLERLRRERE-KAERYQALLKEKreyEGYELLK--------------EKEALERQKEAIERQLASLEEELEKLTE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 352 ERDKYAEnlkgESAMWRQRMQQMSEQVHTLREEKECSM-SRVQELETSLAELRNQMAEPPPPEPPAGpsEVEQQLQAEAE 430
Cdd:TIGR02169 259 EISELEK----RLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEAEIASLERSIAEKERELEDAE--ERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 431 HLRKELEGLAGQLQAQVQDNEGLS--------RLNrEQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQN 502
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTeeyaelkeELE-DLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRL 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 503 RELKEQLAElqsgfvKLTNENMEITSALQseqhvkrelgkKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQY 582
Cdd:TIGR02169 412 QEELQRLSE------ELADLNAAIAGIEA-----------KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 1955630630 583 VAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQ 629
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQ 521
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
219-444 |
4.79e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 47.32 E-value: 4.79e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 219 QYSRRRVGELERALSAVSTQqkkADRYNKELTKERDALR--LELYKNTQSNEDLK---QEKSELEEKLRVLVTEKAGMQL 293
Cdd:COG3206 164 QNLELRREEARKALEFLEEQ---LPELRKELEEAEAALEefRQKNGLVDLSEEAKlllQQLSELESQLAEARAELAEAEA 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 294 NLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesamwrqrmQQ 373
Cdd:COG3206 241 RLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ----------QE 310
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 374 MSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPeppagpsEVE-QQLQAEAEHLRKELEGLAGQLQ 444
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPEL-------EAElRRLEREVEVARELYESLLQRLE 375
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
156-837 |
5.63e-05 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 47.35 E-value: 5.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 156 LKDLEEKKECHQKQGALREQLQVHIQTIGILVSEKAEL-------QTALAHTQHAARQKEGESEDLASRL---QYSRRRV 225
Cdd:TIGR00606 185 IKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIrdqitskEAQLESSREIVKSYENELDPLKNRLkeiEHNLSKI 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 226 GELERALSAVSTQQKKADRYNKELTKER-------DALRLELYKNTQSN---------------EDLKQEKSELEEKLRV 283
Cdd:TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMekvfqgtDEQLNDLYHNHQRTvrekerelvdcqrelEKLNKERRLLNQEKTE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 284 LVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCE------APDANQQLQQA-------MEERAQLEAHL-GQVMESVRQL 349
Cdd:TIGR00606 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLEldgferGPFSERQIKNFhtlvierQEDEAKTAAQLcADLQSKERLK 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 350 QMERDKYAENLKGESAMWRQRMQQMSEQVHTLR------EEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQ 423
Cdd:TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKfvikelQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 424 QLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNdRTTISRALSQNR 503
Cdd:TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPN-KKQLEDWLHSKS 583
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 504 ELKEQLAElqsgfvKLTNENMEITSALQSEQHVKRELGKK---LGELQEKLSELKETVELKS------QEAQSLQQQRDQ 574
Cdd:TIGR00606 584 KEINQTRD------RLAKLNKELASLEQNKNHINNELESKeeqLSSYEDKLFDVCGSQDEESdlerlkEEIEKSSKQRAM 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 575 YLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLeaatqQNQQLRAQLSLMAH 654
Cdd:TIGR00606 658 LAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESEL-----KKKEKRRDEMLGLA 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 655 PGEGDGLDREEEEDEEEEEEEAvAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQA------RLRGQLKEQRvrcRRL 728
Cdd:TIGR00606 733 PGRQSIIDLKEKEIPELRNKLQ-KVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTdvtimeRFQMELKDVE---RKI 808
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 729 AHLLASAQkepeaaapapGTGGDSVCGETHRALQGAMEKLQ---SRFMELMQEKADLKERVEELEHRCIQLSGETDTIGE 805
Cdd:TIGR00606 809 AQQAAKLQ----------GSDLDRTVQQVNQEKQEKQHELDtvvSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGT 878
|
730 740 750
....*....|....*....|....*....|..
gi 1955630630 806 YIALYQSQRAVLKERHREKEEYISRLAQDKEE 837
Cdd:TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQ 910
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
537-792 |
6.47e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 6.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 537 KRELGKKLGELQEKLSELKETvelkSQEAQSLQQQRDQyLGHLQQYVAAYQQLTSEKEVLhnQLLLQTQLVDQLQQQEAQ 616
Cdd:COG4913 220 EPDTFEAADALVEHFDDLERA----HEALEDAREQIEL-LEPIRELAERYAAARERLAEL--EYLRAALRLWFAQRRLEL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 617 GKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREeeedeeeeeeeavavpqpmpsipEDLESReam 696
Cdd:COG4913 293 LEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRL-----------------------EQLERE--- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 697 vaffnsaVASAEEEQARLRGQLKEQRVRCRRL-------AHLLASAQKEPEAAAPApgtggdsvCGETHRALQGAMEKLQ 769
Cdd:COG4913 347 -------IERLERELEERERRRARLEALLAALglplpasAEEFAALRAEAAALLEA--------LEEELEALEEALAEAE 411
|
250 260
....*....|....*....|...
gi 1955630630 770 SRFMELMQEKADLKERVEELEHR 792
Cdd:COG4913 412 AALRDLRRELRELEAEIASLERR 434
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
368-802 |
7.27e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 46.87 E-value: 7.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 368 RQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEppagpSEVEQQLQAEAEHLRKELEGLAGQ--LQA 445
Cdd:COG3096 277 ANERRELSERALELRRELFGARRQLAEEQYRLVEMARELEELSARE-----SDLEQDYQAASDHLNLVQTALRQQekIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 446 QVQDNEGLS-RLNreqeerlleleraaelwgEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 524
Cdd:COG3096 352 YQEDLEELTeRLE------------------EQEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQAL------DV 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 525 EITSALQSEQHVKR-ELGKKLGEL--------QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSekev 595
Cdd:COG3096 408 QQTRAIQYQQAVQAlEKARALCGLpdltpenaEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCK---- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 596 lhnqlllqtqLVDQLQQQEAQGKAvaemarQELQETQERLEAATQQNQQLRAQLSlmahpgEGDGLDREEEEDEEEEEEE 675
Cdd:COG3096 484 ----------IAGEVERSQAWQTA------RELLRRYRSQQALAQRLQQLRAQLA------ELEQRLRQQQNAERLLEEF 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 676 AVAVPQPMPS---IPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAhllasaQKEPE-AAAPAPGTGGD 751
Cdd:COG3096 542 CQRIGQQLDAaeeLEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELA------ARAPAwLAAQDALERLR 615
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630630 752 SVCGET---HRALQGAMEKLQSRFMELMQEKADLKERVEELE---HRCIQLSGETDT 802
Cdd:COG3096 616 EQSGEAladSQEVTAAMQQLLEREREATVERDELAARKQALEsqiERLSQPGGAEDP 672
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
474-862 |
7.35e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 7.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 474 WGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvKRELGKKLGELQEKLSE 553
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELE-----KLEKLLQLLPLYQELEA 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 554 LKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLhNQLLLQTQLVDQLQQQEAQGKAvaEMARQELQETQE 633
Cdd:COG4717 137 LEAELAELPERLEELEERLEELRELEEELEELEAELAELQEEL-EELLEQLSLATEEELQDLAEEL--EELQQRLAELEE 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 634 RLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEA--VAVPQPMPSIPEDLESREAMVAFFNSAVASAEEEQ 711
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAalLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLL 293
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 712 ARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGEThRALQGAMEKLQSRFMELMQEKADLKERVEELEH 791
Cdd:COG4717 294 AREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEEL-LELLDRIEELQELLREAEELEEELQLEELEQEI 372
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 792 RCIQLSGETDTIGEYIALYQ--SQRAVLKERHREKEEYISRLA---------QDKEEMKVKLLELQELVLRLVGDRNEWH 860
Cdd:COG4717 373 AALLAEAGVEDEEELRAALEqaEEYQELKEELEELEEQLEELLgeleelleaLDEEELEEELEELEEELEELEEELEELR 452
|
..
gi 1955630630 861 GR 862
Cdd:COG4717 453 EE 454
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
268-455 |
7.41e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 7.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 268 EDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQvmesVR 347
Cdd:COG4913 613 AALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDD----LA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 348 QLQMERDKyaenlkgesamWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQA 427
Cdd:COG4913 689 ALEEQLEE-----------LEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAA 757
|
170 180 190
....*....|....*....|....*....|
gi 1955630630 428 EA--EHLRKELEGLAGQLQAQVQDNEGLSR 455
Cdd:COG4913 758 ALgdAVERELRENLEERIDALRARLNRAEE 787
|
|
| HpsJ_fam |
NF038305 |
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the ... |
557-644 |
9.42e-05 |
|
HpsJ family protein; HpsJ (hormogornium polysaccharide J) is thought to be involved in the biosynthesis or secretion of an extracellular polysaccharide shared by many Cyanobacteria.
Pssm-ID: 468465 [Multi-domain] Cd Length: 230 Bit Score: 44.88 E-value: 9.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 557 TVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVlhNQLL--------------LQTQLVDQLQQQEAQGKAVAE 622
Cdd:NF038305 102 TRRLSTQALQQINQQAGQQETQLQQQLNQLQAQTSPQQL--NQLLkseqkqgqalasgqLPEEQKEQLQQFKSNPQALDK 179
|
90 100
....*....|....*....|..
gi 1955630630 623 MARQELQETQERLEAATQQNQQ 644
Cdd:NF038305 180 FLAQQLTQIRTQAEEAEKQARL 201
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
223-656 |
1.65e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 45.71 E-value: 1.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 223 RRVGELERALSAVSTQQKKadryNKELTKERDAL---RLELYKNTQSNEDLKQEKSELEEKLRVLVT-----EKAGM-QL 293
Cdd:COG3096 279 ERRELSERALELRRELFGA----RRQLAEEQYRLvemARELEELSARESDLEQDYQAASDHLNLVQTalrqqEKIERyQE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 294 NLEELQKKLEMtelllqqfssrceapdANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQ 373
Cdd:COG3096 355 DLEELTERLEE----------------QEEVVEEAAEQLAEAEARLEAAEEEVDSLKSQLADYQQALD----VQQTRAIQ 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 374 MSEQVHTLREEKECSmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQL---Q 444
Cdd:COG3096 415 YQQAVQALEKARALC--GLPDLTPENAEDYLAAFRAKEQQATEEVLELEQKLSvADAARRQFEkayelVCKIAGEVersQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 445 AQVQDNEGLSRlnreqeerlleleraaelWGEQaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFvkltneNM 524
Cdd:COG3096 493 AWQTARELLRR------------------YRSQ-QALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRI------GQ 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 525 EITSALqseqhvkrelgkklgELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQT 604
Cdd:COG3096 548 QLDAAE---------------ELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARAPAWLAAQDALE 612
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 1955630630 605 QLVDQLQQQEAQGKAV----AEMARQELQETQERLEAAtQQNQQLRAQLSLMAHPG 656
Cdd:COG3096 613 RLREQSGEALADSQEVtaamQQLLEREREATVERDELA-ARKQALESQIERLSQPG 667
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
204-485 |
1.79e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.50 E-value: 1.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 204 ARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKNTQSNEDLKQEKSELEEKL 281
Cdd:pfam05557 306 ARQLEKARRELEQELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRaiLESYDKELTMSNYSPQLLERIEEA 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 282 RVLVTEkagMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQL---QQAMEERAQLEAHLGQVMESVRQLQMERDKYAE 358
Cdd:pfam05557 386 EDMTQK---MQAHNEEMEAQLSVAEEELGGYKQQAQTLERELQAlrqQESLADPSYSKEEVDSLRRKLETLELERQRLRE 462
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 359 nlkgesamwRQRMQQMSEQVHTLREEKECSMSRVQELETSLAelrnqmaeppppeppagpSEVEQQLQAEAEHLRKELEG 438
Cdd:pfam05557 463 ---------QKNELEMELERRCLQGDYDPKKTKVLHLSMNPA------------------AEAYQQRKNQLEKLQAEIER 515
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 1955630630 439 LAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQIL 485
Cdd:pfam05557 516 LKRLLKKLEDDLEQVLRLPETTSTMNFKEVLDLRKELESAELKNQRL 562
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
603-852 |
2.00e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 603 QTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLMAhpgegdgldreeeedeeeeeeeavavpqp 682
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALA----------------------------- 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 683 mpsipEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQRvrcRRLAHLLASAQKEPEAAAPAPGTGGDSVcgethRALQ 762
Cdd:COG4942 69 -----RRIRALEQELAALEAELAELEKEIAELRAELEAQK---EELAELLRALYRLGRQPPLALLLSPEDF-----LDAV 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 763 GAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKL 842
Cdd:COG4942 136 RRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAEL 215
|
250
....*....|
gi 1955630630 843 LELQELVLRL 852
Cdd:COG4942 216 AELQQEAEEL 225
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
247-563 |
2.02e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 247 KELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqQLQ 326
Cdd:PRK03918 172 KEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREI----NEISSELPELREELEKLEKEVKELEELKE------EIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 327 QAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK--GESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRN 404
Cdd:PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEelEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 405 QMAEPPPPEPPAGPSEVE-QQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAE-ARR 482
Cdd:PRK03918 322 EINGIEERIKELEEKEERlEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEkAKE 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 483 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITsalqsEQHVKRELGKKLGELQEKLSELKETVELKS 562
Cdd:PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELT-----EEHRKELLEEYTAELKRIEKELKEIEEKER 476
|
.
gi 1955630630 563 Q 563
Cdd:PRK03918 477 K 477
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
154-839 |
2.05e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 45.34 E-value: 2.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 154 ANLKDLEEKKECHQKQGALREQL-----QVHIQTIGILVSEKAELQTALAHTQ--HAARQKEGESEDLASRLQ----YSR 222
Cdd:TIGR00618 187 AKKKSLHGKAELLTLRSQLLTLCtpcmpDTYHERKQVLEKELKHLREALQQTQqsHAYLTQKREAQEEQLKKQqllkQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 223 RRVGELERALSAVSTQQKKADRYNKELtkerdALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKL 302
Cdd:TIGR00618 267 ARIEELRAQEAVLEETQERINRARKAA-----PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 303 EMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLgqvmESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLR 382
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLT----QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTS 417
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 383 EEKECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEE 462
Cdd:TIGR00618 418 AFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 463 RLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGK 542
Cdd:TIGR00618 498 ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQ 577
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 543 KLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQqyvaayQQLTSEKEVLHNQLLLQTQlvDQLQQQEAQGKAVAE 622
Cdd:TIGR00618 578 CDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQH------ALLRKLQPEQDLQDVRLHL--QQCSQELALKLTALH 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 623 MARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFFNS 702
Cdd:TIGR00618 650 ALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 703 AVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVcGETHRALQGAMEKLQSRFMELMQEKADL 782
Cdd:TIGR00618 730 LGSDLAAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAEL-SHLAAEIQFFNRLREEDTHLLKTLEAEI 808
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1955630630 783 KERVEE----LEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMK 839
Cdd:TIGR00618 809 GQEIPSdediLNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQA 869
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
183-352 |
2.23e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.23e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 183 IGILVSEKAELQTALAHTQHAARQKEGESEDLASRL---------QYSRRRVGELERALSAVSTQQKKADRYN---KELT 250
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERRealqrlaeySWDEIDVASAEREIAELEAELERLDASSddlAALE 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 251 KERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQK--KLEMTELLLQQFSSRCEAPDANQQLQQA 328
Cdd:COG4913 692 EQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDlaRLELRALLEERFAAALGDAVERELRENL 771
|
170 180
....*....|....*....|....
gi 1955630630 329 MEERAQLEAHLGQVMESVRQLQME 352
Cdd:COG4913 772 EERIDALRARLNRAEEELERAMRA 795
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
156-337 |
2.45e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 156 LKDLEEKKECHQKQGALREQLQVHIQTIGILVSEKAE-----LQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELER 230
Cdd:COG4913 251 IELLEPIRELAERYAAARERLAELEYLRAALRLWFAQrrlelLEAELEELRAELARLEAELERLEARLDALREELDELEA 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 231 ALSAVSTQQKkadrynKELTKERDALRLELykntqsnEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQ 310
Cdd:COG4913 331 QIRGNGGDRL------EQLEREIERLEREL-------EERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALE 397
|
170 180
....*....|....*....|....*....
gi 1955630630 311 QFSSRCEAP--DANQQLQQAMEERAQLEA 337
Cdd:COG4913 398 EELEALEEAlaEAEAALRDLRRELRELEA 426
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
123-361 |
2.85e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.06 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 123 STESLRQLSQQLNGLvcesatcvNGEGPASSANLKDLEEK-KECHQKQGALREQLQVHIQTIGILVSEKAELQTALAhtq 201
Cdd:TIGR02169 714 ASRKIGEIEKEIEQL--------EQEEEKLKERLEELEEDlSSLEQEIENVKSELKELEARIEELEEDLHKLEEALN--- 782
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 202 haarqkEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKL 281
Cdd:TIGR02169 783 ------DLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 282 RVLVTEKAGMQLNLEELQKKLEmtelllqqfssrceapDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK 361
Cdd:TIGR02169 857 ENLNGKKEELEEELEELEAALR----------------DLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLS 920
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
474-649 |
3.35e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 474 WGEQAEARRQILETMQNDRTTISRALSQN------RELKEQLAELQSGFVKLTNENMEItsalqseqhvkRELGKKLGEL 547
Cdd:COG4913 629 AEERLEALEAELDALQERREALQRLAEYSwdeidvASAEREIAELEAELERLDASSDDL-----------AALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 548 QEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlqtqlvDQLQQQEAQGKAVAEMARQe 627
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALL------EERFAAALGDAVERELREN- 770
|
170 180
....*....|....*....|..
gi 1955630630 628 lqeTQERLEAATQQNQQLRAQL 649
Cdd:COG4913 771 ---LEERIDALRARLNRAEEEL 789
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
227-446 |
3.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 227 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTE 306
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQK 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 307 LLLQQFSsrceapdanqQLQQAMEERAQLEAHLGQ--VMESVRQLQMERdKYAENLKGESAMWRQRMQQMSEQVHTLREE 384
Cdd:COG4942 104 EELAELL----------RALYRLGRQPPLALLLSPedFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630630 385 KECSMSRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQ-----LQAEAEHLRKELEGLAGQLQAQ 446
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAaelaeLQQEAEELEALIARLEAEAAAA 239
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
476-649 |
3.56e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 3.56e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 476 EQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLtnenmeitsALQSEQHVKRELGKKLGELQEKLSELK 555
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQR---------RLELLEAELEELRAELARLEAELERLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 556 ETVELKSQEAQSLQQQRDQY-LGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQER 634
Cdd:COG4913 316 ARLDALREELDELEAQIRGNgGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEA 395
|
170
....*....|....*
gi 1955630630 635 LEAATQQNQQLRAQL 649
Cdd:COG4913 396 LEEELEALEEALAEA 410
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
422-823 |
4.38e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.99 E-value: 4.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 422 EQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALS- 500
Cdd:COG4717 48 LERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQl 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 501 -----QNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSEL----KETVELKSQEAQSLQQQ 571
Cdd:COG4717 128 lplyqELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLslatEEELQDLAEELEELQQR 207
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 572 RDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQtQLVDQLQQQEAQGKAVAEMA--------------------------- 624
Cdd:COG4717 208 LAELEEELEEAQEELEELEEELEQLENELEAA-ALEERLKEARLLLLIAAALLallglggsllsliltiagvlflvlgll 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 625 --------RQELQETQERLEAATQQNQQLRAQLSLMAHPGEGDGLDREEEEDEEEEEEEAVAVPQPMPSIPEDLE----- 691
Cdd:COG4717 287 allflllaREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelqle 366
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 692 -SREAMVAFFNSAVASAEEEQARLRGQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHRALQGAMEKLQS 770
Cdd:COG4717 367 eLEQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|...
gi 1955630630 771 RFMELMQEKADLKERVEELEhrciqlsgETDTIGEYIALYQSQRAVLKERHRE 823
Cdd:COG4717 447 ELEELREELAELEAELEQLE--------EDGELAELLQELEELKAELRELAEE 491
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
321-646 |
4.48e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.19 E-value: 4.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 321 ANQQLQQAMEERAQLEAHLGQVmESVRQLQMERDKYAENLKGESAMWRQRMQQMS----EQVHTLREEKECSMSRVQELE 396
Cdd:TIGR00618 154 FAQFLKAKSKEKKELLMNLFPL-DQYTQLALMEFAKKKSLHGKAELLTLRSQLLTlctpCMPDTYHERKQVLEKELKHLR 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 397 TSLAELRnqmAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsRLNREQEERLLELERAAELWGE 476
Cdd:TIGR00618 233 EALQQTQ---QSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQE---RINRARKAAPLAAHIKAVTQIE 306
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 477 QAeaRRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTN---ENMEITSALQSEQHVKRELGKKLGELQ--EKL 551
Cdd:TIGR00618 307 QQ--AQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTlhsQEIHIRDAHEVATSIREISCQQHTLTQhiHTL 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 552 SELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQET 631
Cdd:TIGR00618 385 QQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES 464
|
330
....*....|....*
gi 1955630630 632 QERLEAATQQNQQLR 646
Cdd:TIGR00618 465 AQSLKEREQQLQTKE 479
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
504-650 |
6.03e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.85 E-value: 6.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 504 ELKEQLAELQSGFVKLTNENMEITSALQSEQHVKR--ELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGH--L 579
Cdd:COG3206 186 ELRKELEEAEAALEEFRQKNGLVDLSEEAKLLLQQlsELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSpvI 265
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 580 QQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKA-VAEMARQELQETQERLEAATQQNQQLRAQLS 650
Cdd:COG3206 266 QQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAqLQQEAQRILASLEAELEALQAREASLQAQLA 337
|
|
| COG4026 |
COG4026 |
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General ... |
227-301 |
7.48e-04 |
|
Uncharacterized conserved protein, contains TOPRIM domain, potential nuclease [General function prediction only];
Pssm-ID: 443204 [Multi-domain] Cd Length: 287 Bit Score: 42.79 E-value: 7.48e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630630 227 ELERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKK 301
Cdd:COG4026 132 ELREELLELKEKIDEIAKEKEKLTKENEELESELEELREEYKKLREENSILEEEFDNIKSEYSDLKSRFEELLKK 206
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
186-652 |
9.91e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.17 E-value: 9.91e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 186 LVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALR--LELYKN 263
Cdd:pfam05483 83 LYKEAEKIKKWKVSIEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSLKLEEEIQENKDLIKENNATRhlCNLLKE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 264 TQSNEDLKQEKSELEEKlrvlVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEapdanqqlqqameeraqLEAHLGQVM 343
Cdd:pfam05483 163 TCARSAEKTKKYEYERE----ETRQVYMDLNNNIEKMILAFEELRVQAENARLE-----------------MHFKLKEDH 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 344 ESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELEtslaelrnqmaeppppEPPAGPSEVEQ 423
Cdd:pfam05483 222 EKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLE----------------EKTKLQDENLK 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 424 QLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqeerLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNR 503
Cdd:pfam05483 286 ELIEKKDHLTKELEDIKMSLQRSMSTQKAL----------EEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFE 355
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 504 ELKEQLAELqsgfvkLTNENMEITSALQSEQHVKRELGKKLGELQEkLSELKETVELKSQEAQSLQQQRDQYLGHLQQYV 583
Cdd:pfam05483 356 ATTCSLEEL------LRTEQQRLEKNEDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILAEDEKLLDEKKQFE 428
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630630 584 AAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQNQQLRAQLSLM 652
Cdd:pfam05483 429 KIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKL 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
203-575 |
1.06e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 203 AARQKEGESEDLASRLQYSRRRVGELERALSAVSTQQKKADRynkeltkERDALRLELYKNTQSNEDLKQEKSELEEKLR 282
Cdd:TIGR02169 661 APRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIEN-------RLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 283 VLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDAnqQLQQAMEERAQLEAHLGqvMESVRQLQMERDKyaenLKG 362
Cdd:TIGR02169 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEE--DLHKLEEALNDLEARLS--HSRIPEIQAELSK----LEE 805
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 363 ESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELRNQmaeppppeppagpsevEQQLQAEAEHLRKELEGLAGQ 442
Cdd:TIGR02169 806 EVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQ----------------IKSIEKEIENLNGKKEELEEE 869
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 443 L---QAQVQDNEGlsrlnreqeeR----LLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQsg 515
Cdd:TIGR02169 870 LeelEAALRDLES----------RlgdlKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIE-- 937
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630630 516 fvKLTNENMEITSALQSEQHVKRELGKKLGELQ-----------------EKLSELKETVELKSQEAQSLQQQRDQY 575
Cdd:TIGR02169 938 --DPKGEDEEIPEEELSLEDVQAELQRVEEEIRalepvnmlaiqeyeevlKRLDELKEKRAKLEEERKAILERIEEY 1012
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
201-792 |
1.32e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 201 QHAARQKEGESED---LASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKerdalrlelykNTQSNEDLKQEKSEL 277
Cdd:PRK04863 495 WDVARELLRRLREqrhLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGK-----------NLDDEDELEQLQEEL 563
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 278 EEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQFSSRC----EAPDANQQLQ----QAMEERAQLEAHLGQVMESVRQL 349
Cdd:PRK04863 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARApawlAAQDALARLReqsgEEFEDSQDVTEYMQQLLEREREL 643
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 350 QMERDKYAEnlkgesamwrqRMQQMSEQVHTLREEKECSMSRVQELE-----TSLAELRNQMAEPPPPEPPAGPSE---- 420
Cdd:PRK04863 644 TVERDELAA-----------RKQALDEEIERLSQPGGSEDPRLNALAerfggVLLSEIYDDVSLEDAPYFSALYGParha 712
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 421 -VEQQLQAEAEHLrKELEGLAGQLQAQVQDNEGL--SRLNREQEERLLELERAAELW-----------GEqaEARRQILE 486
Cdd:PRK04863 713 iVVPDLSDAAEQL-AGLEDCPEDLYLIEGDPDSFddSVFSVEELEKAVVVKIADRQWrysrfpevplfGR--AAREKRIE 789
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 487 TMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVkRELGKKLGELQEKLSELKETVelksqeaq 566
Cdd:PRK04863 790 QLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAEL-RQLNRRRVELERALADHESQE-------- 860
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 567 slQQQRDQYLgHLQQYVAAYQQLTSEKEVLHNQLLLQ--TQLVDQLQQQE-------AQGKAVAEMARQ--ELQETQERL 635
Cdd:PRK04863 861 --QQQRSQLE-QAKEGLSALNRLLPRLNLLADETLADrvEEIREQLDEAEeakrfvqQHGNALAQLEPIvsVLQSDPEQF 937
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 636 EAATQQNQQLRAQLSLMAhpGEGDGLDREEEEDEEEEEEEAVavpqpmpsipEDLESREAMVAFFNSAVASAEEEQARLR 715
Cdd:PRK04863 938 EQLKQDYQQAQQTQRDAK--QQAFALTEVVQRRAHFSYEDAA----------EMLAKNSDLNEKLRQRLEQAEQERTRAR 1005
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1955630630 716 GQLKEQRVRCRRLAHLLASAQKEPEAAApapgtggdsvcgETHRALQGAMEKLQSRFMELMQEKAdlKERVEELEHR 792
Cdd:PRK04863 1006 EQLRQAQAQLAQYNQVLASLKSSYDAKR------------QMLQELKQELQDLGVPADSGAEERA--RARRDELHAR 1068
|
|
| MutS2 |
COG1193 |
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair]; |
518-659 |
1.41e-03 |
|
dsDNA-specific endonuclease/ATPase MutS2 [Replication, recombination and repair];
Pssm-ID: 440806 [Multi-domain] Cd Length: 784 Bit Score: 42.44 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 518 KLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLghLQQYVAAYQQL-TSEKEVl 596
Cdd:COG1193 508 LLGEESIDVEKLIEELERERRELEEEREEAERLREELEKLREELEEKLEELEEEKEEIL--EKAREEAEEILrEARKEA- 584
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1955630630 597 hnqlllqTQLVDQLQQQEAQGKAVAEmARQELQETQERLEAATQQNQQLRAQLSLMAHPGEGD 659
Cdd:COG1193 585 -------EELIRELREAQAEEEELKE-ARKKLEELKQELEEKLEKPKKKAKPAKPPEELKVGD 639
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
267-457 |
1.48e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 267 NEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKlemtellLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESV 346
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAA-------LEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 347 RQLQMERDKYAENLKGESAMWRQ-----RMQQMSEQVHTLREEKECSMSR-------VQELETSLAELRNQMAEPPPPEP 414
Cdd:COG3206 236 AEAEARLAALRAQLGSGPDALPEllqspVIQQLRAQLAELEAELAELSARytpnhpdVIALRAQIAALRAQLQQEAQRIL 315
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 1955630630 415 PAGPSEVeQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLSRLN 457
Cdd:COG3206 316 ASLEAEL-EALQAREASLQAQLAQLEARLAELPELEAELRRLE 357
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
159-627 |
1.49e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 1.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 159 LEEKKECHQKQgalREQLQVHIQTIGILVSEKAELQTALAHTqHAARQKEGESEDLASRLQYSRRRVGELERALSAVSTQ 238
Cdd:TIGR00618 475 LQTKEQIHLQE---TRKKAVVLARLLELQEEPCPLCGSCIHP-NPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQ 550
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 239 ----QKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLvtekagmQLNLEELQKKLEMTELLLQQFSS 314
Cdd:TIGR00618 551 ltseRKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT-------EKLSEAEDMLACEQHALLRKLQP 623
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 315 RCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQlQMERDKYAENLKGESAMWRQR------MQQMSEQVHTLREEKECS 388
Cdd:TIGR00618 624 EQDLQDVRLHLQQCSQELALKLTALHALQLTLTQ-ERVREHALSIRVLPKELLASRqlalqkMQSEKEQLTYWKEMLAQC 702
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 389 MSRVQELETSLAELRNQMAEPPPPEPPAGpSEVEQQLQAEAEHLRKELEGLAGQLQAQVQDNEglsrlnreqeerllele 468
Cdd:TIGR00618 703 QTLLRELETHIEEYDREFNEIENASSSLG-SDLAAREDALNQSLKELMHQARTVLKARTEAHF----------------- 764
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 469 raaelwgeqaearrqiletmqndrttisralsqnRELKEQLAELQSGfvkltnenmeitsalQSEQHVKRELGKKLGELQ 548
Cdd:TIGR00618 765 ----------------------------------NNNEEVTAALQTG---------------AELSHLAAEIQFFNRLRE 795
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 549 EKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQL-LLQTQLVDQLQQQEAQGKAVAEMARQE 627
Cdd:TIGR00618 796 EDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEItHQLLKYEECSKQLAQLTQEQAKIIQLS 875
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
188-339 |
1.52e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 188 SEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGELERAL----SAVSTQQKKADRYNKEL-----TKERDALRL 258
Cdd:COG1579 17 SELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIkrleLEIEEVEARIKKYEEQLgnvrnNKEYEALQK 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 259 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTELLLQQfssrcEAPDANQQLQQAMEERAQLEAH 338
Cdd:COG1579 97 EIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDE-----ELAELEAELEELEAEREELAAK 171
|
.
gi 1955630630 339 L 339
Cdd:COG1579 172 I 172
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
188-564 |
1.60e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 42.44 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 188 SEKAELQTALAHTQHAARQKEGE----SEDLASRLQYSRRRVGELERALSAvstqQKKADRYNKELTKERDALRL----- 258
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEekkkADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKKADEAkkkae 1441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 259 ------ELYKNTQSNEDLKQEKSELEEKLRV-LVTEKAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEE 331
Cdd:PTZ00121 1442 eakkadEAKKKAEEAKKAEEAKKKAEEAKKAdEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEA 1521
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 332 RAQLEAHLGQVMESVRQL-QMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQEL----ETSLAELRNQM 406
Cdd:PTZ00121 1522 KKADEAKKAEEAKKADEAkKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAkkaeEARIEEVMKLY 1601
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 407 AEPPPPEPPAGPSEVEQQLQAE-------------------------AEHLRKELEGLAGQLQAQVQDNEGLSRLNREQE 461
Cdd:PTZ00121 1602 EEEKKMKAEEAKKAEEAKIKAEelkkaeeekkkveqlkkkeaeekkkAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 462 ERLLELERAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSE------QH 535
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEeekkkiAH 1761
|
410 420 430
....*....|....*....|....*....|
gi 1955630630 536 VKRELGKKLGEL-QEKLSELKETVELKSQE 564
Cdd:PTZ00121 1762 LKKEEEKKAEEIrKEKEAVIEEELDEEDEK 1791
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
368-581 |
1.86e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 368 RQRMQQMSEQVHTLREEKEcSMSRVQELETSLAELRNQMAEPPPPEPPAGPseveQQLQAEAEHLRKELEGLAGQL-QAQ 446
Cdd:COG4913 241 HEALEDAREQIELLEPIRE-LAERYAAARERLAELEYLRAALRLWFAQRRL----ELLEAELEELRAELARLEAELeRLE 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 447 VQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQNDRTTISRALsqnRELKEQLAELQSGFVKLTNENMEI 526
Cdd:COG4913 316 ARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALL---AALGLPLPASAEEFAALRAEAAAL 392
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1955630630 527 TSALQSEQHvkrELGKKLGELQEKLSELKETVELKSQEAQSLQQQRDQYLGHLQQ 581
Cdd:COG4913 393 LEALEEELE---ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARLLA 444
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
229-852 |
1.97e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 42.36 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 229 ERALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNlEELQKKLEMTELL 308
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE-EQLRVKEKIGELE 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 309 LQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVrqlqmerdkyaENLKGESAMWRQRMQQMSEQVHTLREEKECS 388
Cdd:TIGR02169 301 AEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI-----------EELEREIEEERKRRDKLTEEYAELKEELEDL 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 389 MSRVQELETSLAELRnqmaeppppeppagpseveqqlqAEAEHLRKELEGLAgqlqaqvqdneglSRLNREQEERLLELE 468
Cdd:TIGR02169 370 RAELEEVDKEFAETR-----------------------DELKDYREKLEKLK-------------REINELKRELDRLQE 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 469 RAAELWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEItSALQSEQhvkRELGKKLGELQ 548
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL-YDLKEEY---DRVEKELSKLQ 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 549 EKLSELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEvlHNQLLLQTQLVDQLQQQEAQGKAVAEMARQEL 628
Cdd:TIGR02169 490 RELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE--RYATAIEVAAGNRLNNVVVEDDAVAKEAIELL 567
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 629 QEtqERLEAAT----QQNQQLRAQLSLMAHPG-----------------------------------------------E 657
Cdd:TIGR02169 568 KR--RKAGRATflplNKMRDERRDLSILSEDGvigfavdlvefdpkyepafkyvfgdtlvvedieaarrlmgkyrmvtlE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 658 GDGLDREEE-----EDEEEEEEEAVAVPQPMPSIPEDLESREAMVAFF-----------NSAVASAEEEQARLR------ 715
Cdd:TIGR02169 646 GELFEKSGAmtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLqselrrienrlDELSQELSDASRKIGeiekei 725
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 716 GQLKEQRVRCRRLAHLLASAQKEPEAAAPAPGTGGDSVCGETHR------ALQGAMEKL-----QSRFMELMQEKADLKE 784
Cdd:TIGR02169 726 EQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEEleedlhKLEEALNDLearlsHSRIPEIQAELSKLEE 805
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1955630630 785 -------RVEELEHRCIQLSGETDTIGEYIALYQSQRAVLKERHREKEEYISRLAQDKEEMKVKLLELQELVLRL 852
Cdd:TIGR02169 806 evsrieaRLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
248-659 |
3.50e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 3.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 248 ELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVT--EKAGMQLNL----EELQKKLEMTELLLQQFSSRCEApdA 321
Cdd:PRK04863 290 ELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQdyQAASDHLNLvqtaLRQQEKIERYQADLEELEERLEE--Q 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 322 NQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKgesaMWRQRMQQMSEQVHTLREEKECSMSR---VQELETS 398
Cdd:PRK04863 368 NEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALD----VQQTRAIQYQQAVQALERAKQLCGLPdltADNAEDW 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 399 LAELRNQmaeppPPEPPAGPSEVEQQLQ-AEAEHLRKE-----LEGLAGQLQAQVQDNEGLSRLNREQEERLLEleraae 472
Cdd:PRK04863 444 LEEFQAK-----EQEATEELLSLEQKLSvAQAAHSQFEqayqlVRKIAGEVSRSEAWDVARELLRRLREQRHLA------ 512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 473 lwgEQAEARRQILETMQndrttisRALSQNRELKEQLAElqsgFVKLTNENMEITSALQSEQhvkRELGKKLGELQEKLS 552
Cdd:PRK04863 513 ---EQLQQLRMRLSELE-------QRLRQQQRAERLLAE----FCKRLGKNLDDEDELEQLQ---EELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 553 ELKETVELKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLlQTQLVDQLQQQeaqgkavaeMARQELQETQ 632
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFE-DSQDVTEYMQQ---------LLERERELTV 645
|
410 420
....*....|....*....|....*..
gi 1955630630 633 ERLEAATQQnQQLRAQLSLMAHPGEGD 659
Cdd:PRK04863 646 ERDELAARK-QALDEEIERLSQPGGSE 671
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
173-574 |
4.36e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.10 E-value: 4.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 173 REQLQVHIQTIGILVSEKAELQTALAHTQHAArqkegesEDLASRLQYSRRRVGELERALSAVS----------TQQKKA 242
Cdd:PRK04863 278 ANERRVHLEEALELRRELYTSRRQLAAEQYRL-------VEMARELAELNEAESDLEQDYQAASdhlnlvqtalRQQEKI 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 243 DRYNKELtkerDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEELQKKLEMTEL----------LLQQF 312
Cdd:PRK04863 351 ERYQADL----EELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTraiqyqqavqALERA 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 313 SSRCEAPDANqqLQQAMEERAQLEAHLGQVMESVRQLQmERDKYAENLKGESAMWRQRMQQMSEQVhtlreEKECSMSRV 392
Cdd:PRK04863 427 KQLCGLPDLT--ADNAEDWLEEFQAKEQEATEELLSLE-QKLSVAQAAHSQFEQAYQLVRKIAGEV-----SRSEAWDVA 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 393 QELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELEGlagQLQAQVQDNEGLSRLNREQEERLLELERAAE 472
Cdd:PRK04863 499 RELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK---RLGKNLDDEDELEQLQEELEARLESLSESVS 575
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 473 LWGEQAEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQseqhvkrelgkklgELQEKLS 552
Cdd:PRK04863 576 EARERRMALRQQLEQLQARIQRLAARAPAWLAAQDALARLREQSGEEFEDSQDVTEYMQ--------------QLLERER 641
|
410 420
....*....|....*....|..
gi 1955630630 553 ELKETVELKSQEAQSLQQQRDQ 574
Cdd:PRK04863 642 ELTVERDELAARKQALDEEIER 663
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
212-568 |
4.69e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.82 E-value: 4.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 212 EDLASRLQYSRRRVGELERALSAVSTQQKKADRYNKELTKERDALRLEL--YKNTQS--------NEDLKQEKSELEEKL 281
Cdd:PRK03918 182 EKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkeLEELKEeieelekeLESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 282 RVLVTEKAGMQLNLEELQKKLEMTElllqqfssrceapdanqQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLK 361
Cdd:PRK03918 262 RELEERIEELKKEIEELEEKVKELK-----------------ELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEIN 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 362 GESAMWrQRMQQMSEQVHTLREEKECSMSRVQELETSLAE------LRNQMAEPPPPEPPAGPSEVEQQLQaEAEHLRKE 435
Cdd:PRK03918 325 GIEERI-KELEEKEERLEELKKKLKELEKRLEELEERHELyeeakaKKEELERLKKRLTGLTPEKLEKELE-ELEKAKEE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 436 LEGLAGQLQAQvqdnegLSRLNREQEERLLELERAAELWGEQAEARRQI-----LETMQNDRTTISRALSQNRELKEQLA 510
Cdd:PRK03918 403 IEEEISKITAR------IGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrKELLEEYTAELKRIEKELKEIEEKER 476
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 1955630630 511 ELQSGFVKLtnenmEITSALQSEQHVKRELGKKLGELQEKLSEL-KETVELKSQEAQSL 568
Cdd:PRK03918 477 KLRKELREL-----EKVLKKESELIKLKELAEQLKELEEKLKKYnLEELEKKAEEYEKL 530
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
149-378 |
4.92e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 149 GPASSANLKDLEEKKECHQKQ-GALREQLQVHIQTIGILVSEKAELQTALAHTQHAARQKEGESEDLASRLQYSRRRVGE 227
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEiAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 228 LERALSAvstQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQLNLEEL-QKKLEMTE 306
Cdd:COG4942 95 LRAELEA---QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELaALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1955630630 307 LLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQV 378
Cdd:COG4942 172 ERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
324-649 |
5.08e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 324 QLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAENLKGESAMWRQRMQQMSEQVHTLREEKECSMSRVQELETSLAELR 403
Cdd:pfam07888 35 RLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 404 NQMAEPPPPeppagpseveqqlQAEAEHLRKELEGLAGQLQAQVQDNEG-LSRLNREQEERLLELeraaelwGEQAEARR 482
Cdd:pfam07888 115 EEKDALLAQ-------------RAAHEARIRELEEDIKTLTQRVLERETeLERMKERAKKAGAQR-------KEEEAERK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 483 QILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITSALQSEQHVKRE---LGKKLGELQEKLSELKETVE 559
Cdd:pfam07888 175 QLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEneaLLEELRSLQERLNASERKVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 560 LKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQ----TQLVDQLQQQEAQGKAVAEMARQELQETQERL 635
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGrarwAQERETLQQSAEADKDRIEKLSAELQRLEERL 334
|
330
....*....|....
gi 1955630630 636 EAATQQNQQLRAQL 649
Cdd:pfam07888 335 QEERMEREKLEVEL 348
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
268-649 |
5.72e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 5.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 268 EDLKQEKSELEEKLrvlvtekAGMQLNLEELQKKLEMTELLLQQFSSRCEAPDANQQLQQAMEERAQLEAHLGQVMESVR 347
Cdd:PRK04863 789 EQLRAEREELAERY-------ATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQ 861
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 348 QLQMERDKYAENLkgesamwrQRMQQMSEQVHTLREEKecSMSRVQELETSLAELrnQMAEPPPPEPPAGPSEVEQQLQA 427
Cdd:PRK04863 862 QQRSQLEQAKEGL--------SALNRLLPRLNLLADET--LADRVEEIREQLDEA--EEAKRFVQQHGNALAQLEPIVSV 929
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 428 eaehLRKELEGLAgQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQND--RTTISRALSQNREL 505
Cdd:PRK04863 930 ----LQSDPEQFE-QLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEklRQRLEQAEQERTRA 1004
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 506 KEQLAELQSGFvkltNENMEITSALQSEQHVKRELgkkLGELQEKLSELkeTVELKSQEAQSLQQQRDQylghlqqyvaa 585
Cdd:PRK04863 1005 REQLRQAQAQL----AQYNQVLASLKSSYDAKRQM---LQELKQELQDL--GVPADSGAEERARARRDE----------- 1064
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630630 586 yqqltsekevLHNQLLLQTQLVDQLQQQEAQGKAvaemarqELQETQERLEAATQQNQQLRAQL 649
Cdd:PRK04863 1065 ----------LHARLSANRSRRNQLEKQLTFCEA-------EMDNLTKKLRKLERDYHEMREQV 1111
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
562-808 |
6.22e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 6.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 562 SQEAQSLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAATQQ 641
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 642 NQQLRAQLSLMAhpgegdgldREEEEDEEEEEEEAVAVPQPmpsiPEDLESREAMVAFFNSAVASAEEEQARLRGQLKEQ 721
Cdd:COG4942 99 LEAQKEELAELL---------RALYRLGRQPPLALLLSPED----FLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 722 RVRCRRLAHLLASAQKEPEAAapapgtggdsvcgetHRALQGAMEKLQSRFMELMQEKADLKERVEELEHRCIQLSGETD 801
Cdd:COG4942 166 RAELEAERAELEALLAELEEE---------------RAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIA 230
|
....*..
gi 1955630630 802 TIGEYIA 808
Cdd:COG4942 231 RLEAEAA 237
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
542-650 |
6.28e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 39.95 E-value: 6.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 542 KKLGELQEKLSELKETVELKSQEAQSLQQQrdqyLGHLQQYVAAYQQLTSEKEVLHNQLllqTQLVDQLQQQEAQGKAVA 621
Cdd:PRK09039 53 SALDRLNSQIAELADLLSLERQGNQDLQDS----VANLRASLSAAEAERSRLQALLAEL---AGAGAAAEGRAGELAQEL 125
|
90 100
....*....|....*....|....*....
gi 1955630630 622 EMARQELQETQERLEAATQQNQQLRAQLS 650
Cdd:PRK09039 126 DSEKQVSARALAQVELLNQQIAALRRQLA 154
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
357-595 |
6.85e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 6.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 357 AENLKGESAMWRQRMQQMSEQVHTLREekecsmsRVQELETSLAELRNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKEL 436
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRK-------ELEEAEAALEEFRQKNGLVDLSEEAKLLLQQLSELESQLAEARAEL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 437 EglagQLQAQVQDNEGLSRLNREQEERLLELERAAELWGEQAEARRQILETMQndrttisRALSQN---RELKEQLAELQ 513
Cdd:COG3206 236 A----EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSA-------RYTPNHpdvIALRAQIAALR 304
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 514 SGFVKLTNENM-EITSALQSEQHVKRELGKKLGELQEKLSELKEtvelKSQEAQSLQQQRDQYLGHLQQYVAAYQQLTSE 592
Cdd:COG3206 305 AQLQQEAQRILaSLEAELEALQAREASLQAQLAQLEARLAELPE----LEAELRRLEREVEVARELYESLLQRLEEARLA 380
|
...
gi 1955630630 593 KEV 595
Cdd:COG3206 381 EAL 383
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
259-638 |
6.90e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.54 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 259 ELYKNTQSNEDLKQEKSELEEKLRVLVTEKAGMQlnlEELQKKlemTELLLQQFSSRCEAPDANQQLQQAMEEraqLEAH 338
Cdd:pfam01576 13 ELQKVKERQQKAESELKELEKKHQQLCEEKNALQ---EQLQAE---TELCAEAEEMRARLAARKQELEEILHE---LESR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 339 LGQVMESVRQLQMERDKYAENLKGesamWRQRMQQMSEQVHTLREEKECSMSRVQELE--TSLAELRNQMAEPPPPEPPA 416
Cdd:pfam01576 84 LEEEEERSQQLQNEKKKMQQHIQD----LEEQLDEEEAARQKLQLEKVTTEAKIKKLEedILLLEDQNSKLSKERKLLEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 417 GPSEVEQQLqAEAEHLRKELEGLAGQLQAQVQDNEGlsRLNREQEERLLELERAAELWGEQAEARRQILEtmqndrttis 496
Cdd:pfam01576 160 RISEFTSNL-AEEEEKAKSLSKLKNKHEAMISDLEE--RLKKEEKGRQELEKAKRKLEGESTDLQEQIAE---------- 226
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 497 ralsqnreLKEQLAELQSGFVKLTNENMEITSALQSEQHVKRELGKKLGELQEKLSELKETVEL-KSQEAQSLQQQRD-- 573
Cdd:pfam01576 227 --------LQAQIAELRAQLAKKEEELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESeRAARNKAEKQRRDlg 298
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1955630630 574 -------QYLGHLQQYVAAYQQLTS--EKEVLHnqllLQTQLVDQLQQQEAQGKAVAEMARQELQETQERLEAA 638
Cdd:pfam01576 299 eelealkTELEDTLDTTAAQQELRSkrEQEVTE----LKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQA 368
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
151-647 |
7.01e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 40.09 E-value: 7.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 151 ASSANLKDLEEKKECHQKQGALREQLQVHIQtigilvseKAELQTALAHTQhaARQKEGESEDLASRLQYSRRRVGELER 230
Cdd:pfam05483 206 AENARLEMHFKLKEDHEKIQHLEEEYKKEIN--------DKEKQVSLLLIQ--ITEKENKMKDLTFLLEESRDKANQLEE 275
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 231 ALSAVSTQQKKADRYNKELTKERDALRLELYKNTQSNEDLKQEKSELEEKLRVLVTEKagmQLNLEELQKKLEMTELLLQ 310
Cdd:pfam05483 276 KTKLQDENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEK---EAQMEELNKAKAAHSFVVT 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 311 QF-SSRCEAPDANQQLQQAMEERAqleahlgqvmESVRQLQMERDKYAENLkgesamwrqrmqqmsEQVHTLREEKECSM 389
Cdd:pfam05483 353 EFeATTCSLEELLRTEQQRLEKNE----------DQLKIITMELQKKSSEL---------------EEMTKFKNNKEVEL 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 390 srvQELETSLAELRNQMAEppppeppagpsevEQQLQAEAEHLRKELEGLAGQLQAQVQDNEGLsrlnreqEERLLELER 469
Cdd:pfam05483 408 ---EELKKILAEDEKLLDE-------------KKQFEKIAEELKGKEQELIFLLQAREKEIHDL-------EIQLTAIKT 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 470 AAELWGEQAEARRQILETMQNDRTTIS----RALSQNRELKEQLAELQsgfVKLTNENMEITSALQSEQhvkrELGKKLG 545
Cdd:pfam05483 465 SEEHYLKEVEDLKTELEKEKLKNIELTahcdKLLLENKELTQEASDMT---LELKKHQEDIINCKKQEE----RMLKQIE 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 546 ELQEKLSELKETVELKSQEaqsLQQQRDQYLGHLQQYVAAYQQLTSEKEVLHNQLLLQTQLVDQLQQQ-EAQGKAVAEMA 624
Cdd:pfam05483 538 NLEEKEMNLRDELESVREE---FIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQiENKNKNIEELH 614
|
490 500
....*....|....*....|...
gi 1955630630 625 rqelQETQERLEAATQQNQQLRA 647
Cdd:pfam05483 615 ----QENKALKKKGSAENKQLNA 633
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
156-562 |
8.51e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 40.05 E-value: 8.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 156 LKDLEEKKEchqKQGALREQLQVHIQTIGILVSEKAELQTALAHT----QHAARQKEGESEDLASRLQYSRRRVGELERA 231
Cdd:PRK03918 330 IKELEEKEE---RLEELKKKLKELEKRLEELEERHELYEEAKAKKeeleRLKKRLTGLTPEKLEKELEELEKAKEEIEEE 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 232 LSAV-----STQQKKADRY----------------NKELTKERDALRLELYknTQSNEDLKQEKSELEEKLRVLVTEKAG 290
Cdd:PRK03918 407 ISKItarigELKKEIKELKkaieelkkakgkcpvcGRELTEEHRKELLEEY--TAELKRIEKELKEIEEKERKLRKELRE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 291 MQLNLEELQKKLEMTELLLQQFSSRCEAPDAN-QQLQQAMEERAQLEAHLGQVMESVRQLQMERDKYAEnLKGESAMWRQ 369
Cdd:PRK03918 485 LEKVLKKESELIKLKELAEQLKELEEKLKKYNlEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEE-LKKKLAELEK 563
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 370 RMQQMSEQVHTL-REEKECSMSRVQELETSLAELRnqmaepPPPEPPAGPSEVEQQLQAEAEHLRKELEGLagqlqaqVQ 448
Cdd:PRK03918 564 KLDELEEELAELlKELEELGFESVEELEERLKELE------PFYNEYLELKDAEKELEREEKELKKLEEEL-------DK 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 449 DNEGLSRLNREQEERLLELERAAELWGEqaEARRQILETMQNDRTTISRALSQNRELKEQLAELQSGFVKLTNENMEITS 528
Cdd:PRK03918 631 AFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREK 708
|
410 420 430
....*....|....*....|....*....|....
gi 1955630630 529 ALQSEQHVKRELgKKLGELQEKLSELKETVELKS 562
Cdd:PRK03918 709 AKKELEKLEKAL-ERVEELREKVKKYKALLKERA 741
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
476-722 |
9.19e-03 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 40.20 E-value: 9.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 476 EQAEARRQILET-MQNDRTTISRALSQnRELKEQLAELQSGFVKltnenmeiTSALQSEQhvkRELGKKLGELQEKLSEL 554
Cdd:NF012221 1565 ERAEADRQRLEQeKQQQLAAISGSQSQ-LESTDQNALETNGQAQ--------RDAILEES---RAVTKELTTLAQGLDAL 1632
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 555 KETvelKSQEAQSLQQQRDQYLGHLQQYVAayQQLTSEKEVLHNQLL-LQTQLVDQLQQ-QEAQGKAVAEMARQElqetq 632
Cdd:NF012221 1633 DSQ---ATYAGESGDQWRNPFAGGLLDRVQ--EQLDDAKKISGKQLAdAKQRHVDNQQKvKDAVAKSEAGVAQGE----- 1702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1955630630 633 ERLEAATQQNQQLRAQlslmAHPGEGDGLDREEEEDEEEEEEEAVAvpqpmpsipEDLESR---EAMVAFFNSAVASAEE 709
Cdd:NF012221 1703 QNQANAEQDIDDAKAD----AEKRKDDALAKQNEAQQAESDANAAA---------NDAQSRgeqDASAAENKANQAQADA 1769
|
250
....*....|...
gi 1955630630 710 EQARLRGQLKEQR 722
Cdd:NF012221 1770 KGAKQDESDKPNR 1782
|
|
| |
