|
Name |
Accession |
Description |
Interval |
E-value |
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
404-468 |
1.59e-26 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 103.88 E-value: 1.59e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 404 PLPQRRNPPQQPLHVDSICDWDSGEVQLLQGERYKLVDNTDPHAWVVQGPGGETKRAPAACFCIP 468
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
908-1451 |
1.36e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 908 AQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQrpLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRA 987
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELE--LEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 988 GLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVErdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKRE 1067
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1068 VDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEpKVIVKEVKKVEQDPG 1147
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-ALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1148 LLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQ---ERVHEIFQVDPETEQEI-TRLKAKLQEMAGK 1223
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglaGAVAVLIGVEAAYEAALeAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1224 RSGVEKEVEKLLPDLEVLRA---QKPTVEYKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDE 1300
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRAtflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1301 WRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKpEEKVVVQEVVVTQK 1380
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-LAEEEEERELAEAE 713
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1381 DPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSkklAVERELRQLTLRIQELEK 1451
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE---ELERELERLEREIEALGP 781
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
912-1645 |
2.59e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 912 RESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQrpLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQA 991
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANE--ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 992 DLEVAAQKVVQLESKRKTMQPHLLTKEVTQVERDPGLDSQAAQLRIQ---IQQLRGEDAVISARLEGLKKELLALEKREV 1068
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLrskVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1069 DVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDA-ARRKQAEEAVAKLQARIEDLERAISSVEPKvivkevkkveqdpg 1147
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELqEELERLEEALEELREELEEAEQALDAAERE-------------- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1148 LLQESSRLRSlLEEERTKNATLARELSdlhskySVVEKQRPKVQLQERVHEIFQVDPETEQEI-TRLKAKLQEMAGKR-S 1225
Cdd:TIGR02168 484 LAQLQARLDS-LERLQENLEGFSEGVK------ALLKNQSGLSGILGVLSELISVDEGYEAAIeAALGGRLQAVVVENlN 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1226 GVEKEVEKLLPD---------LEVLRAQKPTVEYKEVTQEV-------VRHERSPEVLRE-----------IDRLKAQLN 1278
Cdd:TIGR02168 557 AAKKAIAFLKQNelgrvtflpLDSIKGTEIQGNDREILKNIegflgvaKDLVKFDPKLRKalsyllggvlvVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1279 ELVNSHGRsqEQLIRLQGERDEWRRERAKVETKTVSKEVVRhekdpvlEKEAERLRQEVREAAQKRRAAEDAVYELQSKr 1358
Cdd:TIGR02168 637 LAKKLRPG--YRIVTLDGDLVRPGGVITGGSAKTNSSILER-------RREIEELEEKIEELEEKIAELEKALAELRKE- 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1359 lLLERRKPEEKVVVQEVVVTQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLsfQEDRSKKLAVERE 1438
Cdd:TIGR02168 707 -LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--EEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1439 LRQLTLRIQELEKRPPTVQEKI-IMEEVVKLEKDP--DLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKA-KS 1514
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALdELRAELTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEE 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1515 QEKTIYKEVIRVQKdrvLEDERARVWEMLNRERTARQAREEEARRLRERIDRAEtlgrtwsREESELQRARDQADQECGR 1594
Cdd:TIGR02168 864 LEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELR-------RELEELREKLAQLELRLEG 933
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1595 LQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRgqeLSRLEAAI 1645
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR---LKRLENKI 981
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
879-1662 |
1.84e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.25 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 879 EFARKMLEKKELSEDIRRTHDAKQGSEspaqAGRESEALKAqleEERKRVARVQHELEAQRSQllQLRTQRPLERLEE-K 957
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAED----ARKAEEARKA---EDAKRVEIARKAEDARKAE--EARKAEDAKKAEAaR 1182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 958 EVVEFYRDPQLEgslsrvkaQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQphllTKEVTQVERDPGLDSQAAQLRI 1037
Cdd:PTZ00121 1183 KAEEVRKAEELR--------KAEDARKAEAARKAEEERKAEEARKAEDAKKAEA----VKKAEEAKKDAEEAKKAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1038 QIQQLRGEDAVIsARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEdaarRKQAEEAVAKLQ 1117
Cdd:PTZ00121 1251 NEEIRKFEEARM-AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1118 ARIEDLERAISSVEPKVIVKEVKKVEqdpgllqessrlrsllEEERTKNATLARELSDLHSKYSVVEKQRPKvQLQERVH 1197
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAE----------------AEAAADEAEAAEEKAEAAEKKKEEAKKKAD-AAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1198 EIFQVDpeteqeitRLKAKLQEMAGKRSGVEKEVEkllpdlevlrAQKPTVEYKEVTQEVVRHE---RSPEVLREIDRLK 1274
Cdd:PTZ00121 1389 EKKKAD--------EAKKKAEEDKKKADELKKAAA----------AKKKADEAKKKAEEKKKADeakKKAEEAKKADEAK 1450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1275 AQLNElvnshGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKdpvlekEAERLRQEVREAAQKRRAAEDAvYEL 1354
Cdd:PTZ00121 1451 KKAEE-----AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE------EAKKKADEAKKAAEAKKKADEA-KKA 1518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1355 QSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLA 1434
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1435 VERElRQLTLRIQELEKRPptvQEKIIMEEVVKLEkdpDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKS 1514
Cdd:PTZ00121 1599 KLYE-EEKKMKAEEAKKAE---EAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1515 QEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRlreridRAETLGRTWSREESELQRARDQADQEcGR 1594
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK------KAEELKKAEEENKIKAEEAKKEAEED-KK 1744
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1595 LQQELRALErqkqqqtlqlqEESKLLSQKTESERQKAAQRGQELSRLEAAILREKDQI--YEKERTLRDL 1662
Cdd:PTZ00121 1745 KAEEAKKDE-----------EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrrMEVDKKIKDI 1803
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
917-1688 |
2.53e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.15 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 917 LKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQADLEVA 996
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 997 AQKVVQLESKRKTMQPHllTKEVTQVERDPGLDSQaaqlriQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVV- 1075
Cdd:pfam02463 247 RDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEK------EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKe 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1076 -VKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEQDPGLLQESSR 1154
Cdd:pfam02463 319 sEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1155 LRSLLEEERTKNATLAR----ELSDLHSKYSVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQemagkrsgvEKE 1230
Cdd:pfam02463 399 LKSEEEKEAQLLLELARqledLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE---------LKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1231 VEKLLPDLEVLraqkptveyKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVET 1310
Cdd:pfam02463 470 SEDLLKETQLV---------KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1311 KTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHS- 1389
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDk 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1390 -RLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKL 1468
Cdd:pfam02463 621 rAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1469 EKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKEvIRVQKDRVLEDERARVWEMLNRERT 1548
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK-SRLKKEEKEEEKSELSLKEKELAEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1549 ARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKtESER 1628
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE-ELER 858
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1629 QKAAQRGQELSRLEAAILREKDQIYEKERTLrDLHAKVSREELSQETQTRETNLSTKISI 1688
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELE-SKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1326-1679 |
4.33e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1326 LEKEAERLRQEvREAAQKRRAAEDAVYELQSKRLLLERRKpeekvvvqevvvtqkdpkLREEHSRLSGSLDEEVGRRRQL 1405
Cdd:COG1196 198 LERQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLRE------------------LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1406 ELEVQQLRAGVEEQegllsfqedRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEvvklEKDPDLEKSTEALRWDL 1485
Cdd:COG1196 259 EAELAELEAELEEL---------RLELEELELELEEAQAEEYELLAELARLEQDIARLE----ERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1486 DQEKTQVTELNRECKNLQVQIDVLQKAKSQEKtiykEVIRVQKDRVLEDERARvwemLNRERTARQAREEEARRLRERID 1565
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAE----AELAEAEEALLEAEAEL----AEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1566 RAEtlgrtwsrEESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRGQELSRLEAAI 1645
Cdd:COG1196 398 LAA--------QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
330 340 350
....*....|....*....|....*....|....
gi 156104874 1646 LREKDQIYEKERTLRDLHAKVSREELSQETQTRE 1679
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1858-1896 |
5.72e-10 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 56.18 E-value: 5.72e-10
10 20 30
....*....|....*....|....*....|....*....
gi 156104874 1858 LLEAQAATGGIVDLLSRERYSVHKAMERGLIENTSTQRL 1896
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
481-1280 |
1.10e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 481 LASELQALKQKLATVQSRLKASAVESLRpsqqapsgsdlANPQAQKLLTQMTRLDGDLGQIERQVLAWARAPLSRPTPLE 560
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEE-----------LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 561 DLEGRIHSHEgtaQRLQSLGTEKETAQKECEAFLSTRpvgpaaLQLPVALNSVKNKFSDVQVLCSLYGEKAKAAL----D 636
Cdd:TIGR02168 299 RLEQQKQILR---ERLANLERQLEELEAQLEELESKL------DELAEELAELEEKLEELKEELESLEAELEELEaeleE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 637 LERQIQDADRVIRGFEATLV----QEAPIPAEPGALQERVSELQRQRRELLEQQTCVLRlhralKASEHACAALQNNFQE 712
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAqlelQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-----KLEEAELKELQAELEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 713 FCQDLPRQQRQVRALTDRYHAVGDQLDLREKVVQDAALTYQQFKNCKDNLSSWLEHLprsqvrpSDGPSQIAYKLQAQKR 792
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-------EGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 793 LT-------QEIQSRERDRATashLSQALQAALQDYELQ-ADTYRcsleptLAVSAPKRP---RVAPLQES------IQA 855
Cdd:TIGR02168 518 LSgilgvlsELISVDEGYEAA---IEAALGGRLQAVVVEnLNAAK------KAIAFLKQNelgRVTFLPLDsikgteIQG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 856 QEKNLAKAYTEVAAAQQQLLQQLEFARKMLE------------------KKELSE---------DIRRTHDAKQGSESPA 908
Cdd:TIGR02168 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnalelAKKLRPgyrivtldgDLVRPGGVITGGSAKT 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 909 QAG-----RESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEfyRDPQLEGSLSRVKAQVEEEG 983
Cdd:TIGR02168 669 NSSilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR--QISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 984 KRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVErdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLAL 1063
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1064 EKREVdvkekvvvkevvkveknlEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEpkvivkevkkvE 1143
Cdd:TIGR02168 823 RERLE------------------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE-----------S 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1144 QDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKysVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGk 1223
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESK--RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS- 950
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 156104874 1224 rsgvekevekllpdlevlraqkptVEYKEVTQEVVRHERSPEVLR-EIDRLKAQLNEL 1280
Cdd:TIGR02168 951 ------------------------LTLEEAEALENKIEDDEEEARrRLKRLENKIKEL 984
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1894-1931 |
8.57e-08 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 49.79 E-value: 8.57e-08
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1894 QRLLNAQKAFTGIEDPVTKKRLSVGEAVQKGWMPRESV 1931
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
228-415 |
1.21e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 54.37 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 228 LYTHLQGCTRQLSALAEQQRRILQQDwsDLMADPAGVRREYEHFK--QHELLSQEQSVNQLEDDGERMVELRHPAVGPIQ 305
Cdd:cd00176 1 KLQQFLRDADELEAWLSEKEELLSST--DYGDDLESVEALLKKHEalEAELAAHEERVEALNELGEQLIEEGHPDAEEIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 306 AHQEALKMEWQNFLNLCICQETQLQHVEDYRRFQEEADSVSQTLAKLNSNLDakySPAPGGPPGAPTELLQQLEAEEKRL 385
Cdd:cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALA---SEDLGKDLESVEELLKKHKELEEEL 155
|
170 180 190
....*....|....*....|....*....|
gi 156104874 386 avtERATGDLQRRSRDVAPLPQRRNPPQQP 415
Cdd:cd00176 156 ---EAHEPRLKSLNELAEELLEEGHPDADE 182
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1935-1972 |
1.47e-07 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 49.25 E-value: 1.47e-07
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1935 LQVQHLTGGLIDPKRTGRIPIQQALLSGMISEELAQLL 1972
Cdd:pfam00681 2 LEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1856-1889 |
6.58e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 47.48 E-value: 6.58e-07
10 20 30
....*....|....*....|....*....|....
gi 156104874 1856 QKLLEAQAATGGIVDLLSRERYSVHKAMERGLIE 1889
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLID 34
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
629-1132 |
8.94e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 8.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 629 EKAKAALDLERQIQDADRVIRGFEATLVQEApipAEPGALQERVSELQRQRRELLEQqtcVLRLHRALKASEHACAALQN 708
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELR---LELEELELELEEAQAEEYELLAE---LARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 709 NFQEFCQDLPRQQRQVRALTDRYHAVGDQLDLREKVVQDAALTYQQFKN-----------CKDNLSSWLEHLPRSQVRPS 777
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEalleaeaelaeAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 778 DGPSQIAYKLQAQKRLTQEIQSRERDRATASHLSQALQAALQDYELQADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQE 857
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 858 KNLAKAYTEVAAAQQQLLQQLEFARKM---------LEKKELSEDIRRTHDAKQGSESPAQAGRESEALKAQLEEERKRV 928
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYegflegvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 929 ARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSR-VKAQVEEEGKRRAGLQADLEVAAQKVVQLESKR 1007
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1008 KTMQPHLLTKEVTQVERDPGLDSQA-----------AQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVV 1076
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSltggsrrellaALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 1077 KEVVKVEKNLEMVKAAQALRLQME---------EDAARRKQAEEAVAKLQARIEDLERAISSVEP 1132
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEElleeeelleEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
237-330 |
9.66e-05 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 43.47 E-value: 9.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 237 RQLSALAEQQRRILQQDwsDLMADPAGVRREYEHFK--QHELLSQEQSVNQLEDDGERMVELRHPAVGPIQAHQEALKME 314
Cdd:smart00150 8 DELEAWLEEKEQLLASE--DLGKDLESVEALLKKHEafEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNER 85
|
90
....*....|....*.
gi 156104874 315 WQNFLNLCICQETQLQ 330
Cdd:smart00150 86 WEELKELAEERRQKLE 101
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1688-1716 |
1.36e-04 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 40.77 E-value: 1.36e-04
10 20
....*....|....*....|....*....
gi 156104874 1688 ILEPETGKDMSPYEAYKRGIIDRGQYLQL 1716
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1818-1855 |
2.78e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 40.16 E-value: 2.78e-04
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1818 LGLGDDSFPIAGIYDTTTDNKCSIKTAVAKNMLDPITG 1855
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1932-1969 |
6.93e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 39.00 E-value: 6.93e-04
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1932 LPHLQVQHLTGGLIDPKRTGRIPIQQALLSGMISEELA 1969
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1408-1718 |
2.35e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1408 EVQQLRAGVEEQEGLLSFQED-------RSKKLAVERELRQLTLRIQELEKRPPTVQEKIimeEVVKLEKDPDLE----- 1475
Cdd:pfam15921 188 EIRSILVDFEEASGKKIYEHDsmstmhfRSLGSAISKILRELDTEISYLKGRIFPVEDQL---EALKSESQNKIElllqq 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1476 --KSTEALRWDLDQEKTQVTE----LNRECKNLQVQIDVLQKAKSQEKTIYKevirvqkdRVLEDERARVWEMLNRERTA 1549
Cdd:pfam15921 265 hqDRIEQLISEHEVEITGLTEkassARSQANSIQSQLEIIQEQARNQNSMYM--------RQLSDLESTVSQLRSELREA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1550 RQAREeearrlreriDRAETLGRTWSREESELQRAR---DQADQECG----RLQQELRALERQKQQQTLQLQEESKLLSQ 1622
Cdd:pfam15921 337 KRMYE----------DKIEELEKQLVLANSELTEARterDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKRLWDR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1623 KTESE------RQKAAQRGQELSRLEAAILREKDQIY-EKERTLRDLHAK-VSREELSQETQTRETNLSTKISILEPETG 1694
Cdd:pfam15921 407 DTGNSitidhlRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKnESLEKVSSLTAQLESTKEMLRKVVEELTA 486
|
330 340
....*....|....*....|....
gi 156104874 1695 KDMSpYEAYKRGIIDRGQYLQLQE 1718
Cdd:pfam15921 487 KKMT-LESSERTVSDLTASLQEKE 509
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1385-1707 |
2.40e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1385 REEHSRLSGSLDEEVGRRRQLElEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRqltLRIQELEKRPPTVQEKIIMEE 1464
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALE-ELEEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1465 VVKLEKD-PDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDvlQKAKSQEKTIYKEVIRVQKD-RVLEDERARVWEM 1542
Cdd:TIGR02169 232 KEALERQkEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKiGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1543 LNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERqkqqQTLQLQEESKLLSQ 1622
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1623 KTESERQKAAQRGQELSRLEAAILREKDQIYEKERTLRDLHAKVSR-EELSQETQTRETNLSTKISILEPE---TGKDMS 1698
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKALEIKKQEWKleqLAADLS 465
|
....*....
gi 156104874 1699 PYEAYKRGI 1707
Cdd:TIGR02169 466 KYEQELYDL 474
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1688-1713 |
5.42e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 36.31 E-value: 5.42e-03
10 20
....*....|....*....|....*.
gi 156104874 1688 ILEPETGKDMSPYEAYKRGIIDRGQY 1713
Cdd:smart00250 13 IIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SH3_10 |
pfam17902 |
SH3 domain; This entry represents an SH3 domain. |
404-468 |
1.59e-26 |
|
SH3 domain; This entry represents an SH3 domain.
Pssm-ID: 407754 Cd Length: 65 Bit Score: 103.88 E-value: 1.59e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 404 PLPQRRNPPQQPLHVDSICDWDSGEVQLLQGERYKLVDNTDPHAWVVQGPGGETKRAPAACFCIP 468
Cdd:pfam17902 1 PLKQRRSPVTRPIPVKALCDYKQGEVTVEKGEECTLLDNSDREKWKVQTSSGVEKLVPSVCFLIP 65
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
908-1451 |
1.36e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 89.61 E-value: 1.36e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 908 AQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQrpLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRA 987
Cdd:COG1196 242 EELEAELEELEAELEELEAELAELEAELEELRLELEELELE--LEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 988 GLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVErdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKRE 1067
Cdd:COG1196 320 ELEEELAELEEELEELEEELEELEEELEEAEEELEE----AEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1068 VDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEpKVIVKEVKKVEQDPG 1147
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEE-ALLELLAELLEEAAL 474
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1148 LLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQ---ERVHEIFQVDPETEQEI-TRLKAKLQEMAGK 1223
Cdd:COG1196 475 LEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRglaGAVAVLIGVEAAYEAALeAALAAALQNIVVE 554
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1224 RSGVEKEVEKLLPDLEVLRA---QKPTVEYKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDE 1300
Cdd:COG1196 555 DDEVAAAAIEYLKAAKAGRAtflPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1301 WRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKpEEKVVVQEVVVTQK 1380
Cdd:COG1196 635 ALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEAL-LAEEEEERELAEAE 713
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1381 DPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSkklAVERELRQLTLRIQELEK 1451
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLE---ELERELERLEREIEALGP 781
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
915-1498 |
1.70e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 915 EALKaQLEEERKRVARVQ---HELEAQRSQL----------LQLRtqrplERLEEKEVVE-FYRDPQLEGSLSRVKAQVE 980
Cdd:COG1196 176 EAER-KLEATEENLERLEdilGELERQLEPLerqaekaeryRELK-----EELKELEAELlLLKLRELEAELEELEAELE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 981 EEGKRRAGLQADLEVAAQKVVQLESKRKTMQphLLTKEVTQVERDpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKEL 1060
Cdd:COG1196 250 ELEAELEELEAELAELEAELEELRLELEELE--LELEEAQAEEYE--LLAELARLEQDIARLEERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1061 LALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVK 1140
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1141 KVEQDpGLLQESSRLRSLLEEERTKNATLARELSDLHSKYS-----VVEKQRPKVQLQERVHEIFQVDPETEQEITRLKA 1215
Cdd:COG1196 406 EEAEE-ALLERLERLEEELEELEEALAELEEEEEEEEEALEeaaeeEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1216 KLQEMAGKRSGVEKEVEKLLPDLEVLRAQKPTVEYKEVTQEVVRHERSPEVLRE--IDRLKAQLNELVNSHGRSQEQLIR 1293
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAalEAALAAALQNIVVEDDEVAAAAIE 564
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1294 LQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQ 1373
Cdd:COG1196 565 YLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAG 644
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1374 EVVVTQKD-----PKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERE-LRQLTLRIQ 1447
Cdd:COG1196 645 RLREVTLEgeggsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEeRLEEELEEE 724
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1448 ELEKRPPTVQEKIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRE 1498
Cdd:COG1196 725 ALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLERE 775
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
912-1645 |
2.59e-14 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 78.95 E-value: 2.59e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 912 RESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQrpLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQA 991
Cdd:TIGR02168 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANE--ISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAE 337
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 992 DLEVAAQKVVQLESKRKTMQPHLLTKEVTQVERDPGLDSQAAQLRIQ---IQQLRGEDAVISARLEGLKKELLALEKREV 1068
Cdd:TIGR02168 338 ELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLrskVAQLELQIASLNNEIERLEARLERLEDRRE 417
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1069 DVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDA-ARRKQAEEAVAKLQARIEDLERAISSVEPKvivkevkkveqdpg 1147
Cdd:TIGR02168 418 RLQQEIEELLKKLEEAELKELQAELEELEEELEELqEELERLEEALEELREELEEAEQALDAAERE-------------- 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1148 LLQESSRLRSlLEEERTKNATLARELSdlhskySVVEKQRPKVQLQERVHEIFQVDPETEQEI-TRLKAKLQEMAGKR-S 1225
Cdd:TIGR02168 484 LAQLQARLDS-LERLQENLEGFSEGVK------ALLKNQSGLSGILGVLSELISVDEGYEAAIeAALGGRLQAVVVENlN 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1226 GVEKEVEKLLPD---------LEVLRAQKPTVEYKEVTQEV-------VRHERSPEVLRE-----------IDRLKAQLN 1278
Cdd:TIGR02168 557 AAKKAIAFLKQNelgrvtflpLDSIKGTEIQGNDREILKNIegflgvaKDLVKFDPKLRKalsyllggvlvVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1279 ELVNSHGRsqEQLIRLQGERDEWRRERAKVETKTVSKEVVRhekdpvlEKEAERLRQEVREAAQKRRAAEDAVYELQSKr 1358
Cdd:TIGR02168 637 LAKKLRPG--YRIVTLDGDLVRPGGVITGGSAKTNSSILER-------RREIEELEEKIEELEEKIAELEKALAELRKE- 706
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1359 lLLERRKPEEKVVVQEVVVTQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLsfQEDRSKKLAVERE 1438
Cdd:TIGR02168 707 -LEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERL--EEAEEELAEAEAE 783
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1439 LRQLTLRIQELEKRPPTVQEKI-IMEEVVKLEKDP--DLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKA-KS 1514
Cdd:TIGR02168 784 IEELEAQIEQLKEELKALREALdELRAELTLLNEEaaNLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEiEE 863
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1515 QEKTIYKEVIRVQKdrvLEDERARVWEMLNRERTARQAREEEARRLRERIDRAEtlgrtwsREESELQRARDQADQECGR 1594
Cdd:TIGR02168 864 LEELIEELESELEA---LLNERASLEEALALLRSELEELSEELRELESKRSELR-------RELEELREKLAQLELRLEG 933
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1595 LQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRgqeLSRLEAAI 1645
Cdd:TIGR02168 934 LEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRR---LKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
908-1702 |
2.52e-13 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 75.87 E-value: 2.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 908 AQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRP-----LERLEEKEVVEFY----RDPQLEGSLSRVKAQ 978
Cdd:TIGR02169 166 AEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREkaeryQALLKEKREYEGYellkEKEALERQKEAIERQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 979 VEEEGKRRAGLQADLEVAAQKVVQLESKRKTmqphlLTKEVtqverDPGLDSQAAQLRIQIQQLRGEDAVISARLEglkk 1058
Cdd:TIGR02169 246 LASLEEELEKLTEEISELEKRLEEIEQLLEE-----LNKKI-----KDLGEEEQLRVKEKIGELEAEIASLERSIA---- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1059 ellalekrevdvkekvvvkevvkveknlemvkaaqALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKE 1138
Cdd:TIGR02169 312 -----------------------------------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLT 356
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1139 VKKVEqdpgLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVV-----EKQRPKVQLQERVHEIFQVDPETEQEITRL 1213
Cdd:TIGR02169 357 EEYAE----LKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLkreinELKRELDRLQEELQRLSEELADLNAAIAGI 432
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1214 KAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKPTVEYK----EVTQEVVRHERSpEVLREIDRLKAQLNELVNS--HGRS 1287
Cdd:TIGR02169 433 EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQElydlKEEYDRVEKELS-KLQRELAEAEAQARASEERvrGGRA 511
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1288 QEQLIR--------LQGERDEWRRERAK-VETKTVSK-EVVRHEKDPVLEKEAERLRQEvreaaQKRRAAEDAVYELQSK 1357
Cdd:TIGR02169 512 VEEVLKasiqgvhgTVAQLGSVGERYATaIEVAAGNRlNNVVVEDDAVAKEAIELLKRR-----KAGRATFLPLNKMRDE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1358 RLLLERRKPEEKVVVQEVVVTQkDPKLREEHSRLSGSL----DEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKL 1433
Cdd:TIGR02169 587 RRDLSILSEDGVIGFAVDLVEF-DPKYEPAFKYVFGDTlvveDIEAARRLMGKYRMVTLEGELFEKSGAMTGGSRAPRGG 665
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1434 AV-----ERELRQLTLRIQELEKrpptvQEKIIMEEVVKLEKD--------PDLEKSTEALRWDLDQEKTQVTELNRECK 1500
Cdd:TIGR02169 666 ILfsrsePAELQRLRERLEGLKR-----ELSSLQSELRRIENRldelsqelSDASRKIGEIEKEIEQLEQEEEKLKERLE 740
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1501 NLQVQIDVLQKAKSQEKTIYKEVIRV--QKDRVLEDERARVWEMLNRERTAR-QAREEEARRLRERIDRAETLGRTWSRE 1577
Cdd:TIGR02169 741 ELEEDLSSLEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLREIEQK 820
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1578 ESELQRARDQADQECGRLQQELRALE-RQKQQQTLQLQEESKLLSQKTESERQKAAQR--GQELSRLEAAILREKDQIYE 1654
Cdd:TIGR02169 821 LNRLTLEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGKKEELEEELEELEAALRdlESRLGDLKKERDELEAQLRE 900
|
810 820 830 840
....*....|....*....|....*....|....*....|....*....
gi 156104874 1655 KERTLRDLHAKVSREELSQ-ETQTRETNLSTKISILEPETGKDMSPYEA 1702
Cdd:TIGR02169 901 LERKIEELEAQIEKKRKRLsELKAKLEALEEELSEIEDPKGEDEEIPEE 949
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1156-1682 |
9.70e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 73.82 E-value: 9.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1156 RSLLEEERTKNATL-ARELSDLHSKYSVVEKQRPKVQLQERvheifqvdpETEQEITRLKAKLQEMAGKRSGVEKEVEKL 1234
Cdd:COG1196 216 RELKEELKELEAELlLLKLRELEAELEELEAELEELEAELE---------ELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1235 LPDLEVLRAQKPTVEykevTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVS 1314
Cdd:COG1196 287 QAEEYELLAELARLE----QDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAE 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1315 KEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKP-EEKVVVQEVVVTQKDPKLREEHSRLSG 1393
Cdd:COG1196 363 AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLErLERLEEELEELEEALAELEEEEEEEEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1394 SLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDPD 1473
Cdd:COG1196 443 ALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGL 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1474 LEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDvlQKAKSQEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAR 1553
Cdd:COG1196 523 AGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD--EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAA 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1554 EEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQ 1633
Cdd:COG1196 601 VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE 680
|
490 500 510 520
....*....|....*....|....*....|....*....|....*....
gi 156104874 1634 RGQELSRLEAAILREKDQIYEKERTLRDLHAKVSREELSQETQTRETNL 1682
Cdd:COG1196 681 LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
946-1690 |
1.70e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.17 E-value: 1.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 946 RTQRPLERLEEkeVVEfyrdpQLEGSLSRVKAQVEEEGK----RRAGLQADLEVAAQKVVQLESKRKTMQpHLLTKEVTQ 1021
Cdd:TIGR02168 183 RTRENLDRLED--ILN-----ELERQLKSLERQAEKAERykelKAELRELELALLVLRLEELREELEELQ-EELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1022 VERdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLAL--EKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQM 1099
Cdd:TIGR02168 255 LEE---LTAELQELEEKLEELRLEVSELEEEIEELQKELYALanEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1100 -EEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTKNATLARELSDLHs 1178
Cdd:TIGR02168 332 lDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE- 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1179 kysvvekqrpkvQLQERVHEIFQVDPETEQEITRlkAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKPTVEykevtqevv 1258
Cdd:TIGR02168 411 ------------RLEDRRERLQQEIEELLKKLEE--AELKELQAELEELEEELEELQEELERLEEALEELR--------- 467
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1259 rhERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKT----VSKEVVRHEKDPVLEKEA---E 1331
Cdd:TIGR02168 468 --EELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSgilgVLSELISVDEGYEAAIEAalgG 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1332 RLRQEVREAAQkrrAAEDAVYELQSKRL-------------------LLERRKPEEKVVVQEVVVTQKDPKLRE------ 1386
Cdd:TIGR02168 546 RLQAVVVENLN---AAKKAIAFLKQNELgrvtflpldsikgteiqgnDREILKNIEGFLGVAKDLVKFDPKLRKalsyll 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1387 EHSRLSGSLDEEVGRRRQLE-------LEVQQLRAGveeqeGLLSFQEDR--SKKLAVERELRQLTLRIQELEkrpptVQ 1457
Cdd:TIGR02168 623 GGVLVVDDLDNALELAKKLRpgyrivtLDGDLVRPG-----GVITGGSAKtnSSILERRREIEELEEKIEELE-----EK 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1458 EKIIMEEVVklekdpDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQidvLQKAKSQEKTIYKEVIRVQKDRV-LEDER 1536
Cdd:TIGR02168 693 IAELEKALA------ELRKELEELEEELEQLRKELEELSRQISALRKD---LARLEAEVEQLEERIAQLSKELTeLEAEI 763
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1537 ARVWEMLNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEE 1616
Cdd:TIGR02168 764 EELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL 843
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1617 SKLLSQKTESERQKAAQRGQ-----------------ELSRLEAAILREKDQIYEKERTLRDLHAKVSR-EELSQETQTR 1678
Cdd:TIGR02168 844 EEQIEELSEDIESLAAEIEEleelieeleseleallnERASLEEALALLRSELEELSEELRELESKRSElRRELEELREK 923
|
810
....*....|..
gi 156104874 1679 ETNLSTKISILE 1690
Cdd:TIGR02168 924 LAQLELRLEGLE 935
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
879-1662 |
1.84e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.25 E-value: 1.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 879 EFARKMLEKKELSEDIRRTHDAKQGSEspaqAGRESEALKAqleEERKRVARVQHELEAQRSQllQLRTQRPLERLEE-K 957
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAED----ARKAEEARKA---EDAKRVEIARKAEDARKAE--EARKAEDAKKAEAaR 1182
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 958 EVVEFYRDPQLEgslsrvkaQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQphllTKEVTQVERDPGLDSQAAQLRI 1037
Cdd:PTZ00121 1183 KAEEVRKAEELR--------KAEDARKAEAARKAEEERKAEEARKAEDAKKAEA----VKKAEEAKKDAEEAKKAEEERN 1250
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1038 QIQQLRGEDAVIsARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEdaarRKQAEEAVAKLQ 1117
Cdd:PTZ00121 1251 NEEIRKFEEARM-AHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE----AKKADEAKKKAE 1325
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1118 ARIEDLERAISSVEPKVIVKEVKKVEqdpgllqessrlrsllEEERTKNATLARELSDLHSKYSVVEKQRPKvQLQERVH 1197
Cdd:PTZ00121 1326 EAKKKADAAKKKAEEAKKAAEAAKAE----------------AEAAADEAEAAEEKAEAAEKKKEEAKKKAD-AAKKKAE 1388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1198 EIFQVDpeteqeitRLKAKLQEMAGKRSGVEKEVEkllpdlevlrAQKPTVEYKEVTQEVVRHE---RSPEVLREIDRLK 1274
Cdd:PTZ00121 1389 EKKKAD--------EAKKKAEEDKKKADELKKAAA----------AKKKADEAKKKAEEKKKADeakKKAEEAKKADEAK 1450
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1275 AQLNElvnshGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKdpvlekEAERLRQEVREAAQKRRAAEDAvYEL 1354
Cdd:PTZ00121 1451 KKAEE-----AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAE------EAKKKADEAKKAAEAKKKADEA-KKA 1518
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1355 QSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLA 1434
Cdd:PTZ00121 1519 EEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1435 VERElRQLTLRIQELEKRPptvQEKIIMEEVVKLEkdpDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKS 1514
Cdd:PTZ00121 1599 KLYE-EEKKMKAEEAKKAE---EAKIKAEELKKAE---EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE 1671
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1515 QEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRlreridRAETLGRTWSREESELQRARDQADQEcGR 1594
Cdd:PTZ00121 1672 EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK------KAEELKKAEEENKIKAEEAKKEAEED-KK 1744
|
730 740 750 760 770 780 790
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1595 LQQELRALErqkqqqtlqlqEESKLLSQKTESERQKAAQRGQELSRLEAAILREKDQI--YEKERTLRDL 1662
Cdd:PTZ00121 1745 KAEEAKKDE-----------EEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKrrMEVDKKIKDI 1803
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
912-1573 |
9.70e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.74 E-value: 9.70e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 912 RESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPlerleekevvefyrdpQLEGSLSRVKAQVEEEGKRRAGLQA 991
Cdd:COG1196 225 LEAELLLLKLRELEAELEELEAELEELEAELEELEAELA----------------ELEAELEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 992 DLEVAAQKVVQLESKRKTmqphlltkevtQVERDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVK 1071
Cdd:COG1196 289 EEYELLAELARLEQDIAR-----------LEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1072 EKVVVKEVVKveknLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSvepkvivkevkkveqdpgLLQE 1151
Cdd:COG1196 358 AELAEAEEAL----LEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA------------------LLER 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1152 SSRLRSLLEEERTKNATLARELSDLHSKYS-----VVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSG 1226
Cdd:COG1196 416 LERLEEELEELEEALAELEEEEEEEEEALEeaaeeEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1227 VEKEVEKLLPDLEVLRAQKPTVEYKEVTQEVVRHERSPEVLRE--IDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRE 1304
Cdd:COG1196 496 LLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAalEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRAT 575
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1305 RAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKD--- 1381
Cdd:COG1196 576 FLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEgeg 655
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1382 --PKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERE-LRQLTLRIQELEKRPPTVQE 1458
Cdd:COG1196 656 gsAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEeRLEEELEEEALEEQLEAERE 735
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1459 KIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNL-QVQIDVLQKAKSQEKTiyKEVIRVQKDrVLEDERA 1537
Cdd:COG1196 736 ELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALgPVNLLAIEEYEELEER--YDFLSEQRE-DLEEARE 812
|
650 660 670
....*....|....*....|....*....|....*.
gi 156104874 1538 RvwemlnrertarqareeearrLRERIDRAETLGRT 1573
Cdd:COG1196 813 T---------------------LEEAIEEIDRETRE 827
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
917-1688 |
2.53e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 66.15 E-value: 2.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 917 LKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQADLEVA 996
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 997 AQKVVQLESKRKTMQPHllTKEVTQVERDPGLDSQaaqlriQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVV- 1075
Cdd:pfam02463 247 RDEQEEIESSKQEIEKE--EEKLAQVLKENKEEEK------EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKe 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1076 -VKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEQDPGLLQESSR 1154
Cdd:pfam02463 319 sEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1155 LRSLLEEERTKNATLAR----ELSDLHSKYSVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQemagkrsgvEKE 1230
Cdd:pfam02463 399 LKSEEEKEAQLLLELARqledLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELE---------LKK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1231 VEKLLPDLEVLraqkptveyKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVET 1310
Cdd:pfam02463 470 SEDLLKETQLV---------KLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVEN 540
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1311 KTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHS- 1389
Cdd:pfam02463 541 YKVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDk 620
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1390 -RLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKL 1468
Cdd:pfam02463 621 rAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLE 700
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1469 EKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKEvIRVQKDRVLEDERARVWEMLNRERT 1548
Cdd:pfam02463 701 IKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEK-SRLKKEEKEEEKSELSLKEKELAEE 779
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1549 ARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKtESER 1628
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEE-ELER 858
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1629 QKAAQRGQELSRLEAAILREKDQIYEKERTLrDLHAKVSREELSQETQTRETNLSTKISI 1688
Cdd:pfam02463 859 LEEEITKEELLQELLLKEEELEEQKLKDELE-SKEEKEKEEKKELEEESQKLNLLEEKEN 917
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1326-1679 |
4.33e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 4.33e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1326 LEKEAERLRQEvREAAQKRRAAEDAVYELQSKRLLLERRKpeekvvvqevvvtqkdpkLREEHSRLSGSLDEEVGRRRQL 1405
Cdd:COG1196 198 LERQLEPLERQ-AEKAERYRELKEELKELEAELLLLKLRE------------------LEAELEELEAELEELEAELEEL 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1406 ELEVQQLRAGVEEQegllsfqedRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEvvklEKDPDLEKSTEALRWDL 1485
Cdd:COG1196 259 EAELAELEAELEEL---------RLELEELELELEEAQAEEYELLAELARLEQDIARLE----ERRRELEERLEELEEEL 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1486 DQEKTQVTELNRECKNLQVQIDVLQKAKSQEKtiykEVIRVQKDRVLEDERARvwemLNRERTARQAREEEARRLRERID 1565
Cdd:COG1196 326 AELEEELEELEEELEELEEELEEAEEELEEAE----AELAEAEEALLEAEAEL----AEAEEELEELAEELLEALRAAAE 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1566 RAEtlgrtwsrEESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRGQELSRLEAAI 1645
Cdd:COG1196 398 LAA--------QLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
330 340 350
....*....|....*....|....*....|....
gi 156104874 1646 LREKDQIYEKERTLRDLHAKVSREELSQETQTRE 1679
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1858-1896 |
5.72e-10 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 56.18 E-value: 5.72e-10
10 20 30
....*....|....*....|....*....|....*....
gi 156104874 1858 LLEAQAATGGIVDLLSRERYSVHKAMERGLIENTSTQRL 1896
Cdd:pfam00681 1 LLEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
782-1339 |
9.43e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.19 E-value: 9.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 782 QIAYKLQAQKRLTQEIQSRERDRATASHLSQALQAALQDYELQADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQEKNLA 861
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 862 KAYTEVAAAQQQLLQQLEfarKMLEKKELSEDIRRTHDAKQGSESpAQAGRESEALKAQLEEERKRVARVQHELEAQRSQ 941
Cdd:COG1196 320 ELEEELAELEEELEELEE---ELEELEEELEEAEEELEEAEAELA-EAEEALLEAEAELAEAEEELEELAEELLEALRAA 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 942 LLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQ 1021
Cdd:COG1196 396 AELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALL 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1022 VERDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEE 1101
Cdd:COG1196 476 EAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVED 555
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1102 DAARRKQAEEAVAKLQARIEDLERAissvepkviVKEVKKVEQDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKYS 1181
Cdd:COG1196 556 DEVAAAAIEYLKAAKAGRATFLPLD---------KIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRT 626
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1182 VVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKptvEYKEVTQEVVRHE 1261
Cdd:COG1196 627 LVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAE---EELELEEALLAEE 703
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 156104874 1262 rspEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVRE 1339
Cdd:COG1196 704 ---EEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1038-1545 |
7.16e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 61.23 E-value: 7.16e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1038 QIQQLRGEDAVISARLEGLKKELLALEKREVDVKekvvvkevvkveknlEMVKAAQALRLQMEEDAARRKQAEEAVAKLQ 1117
Cdd:PRK03918 208 EINEISSELPELREELEKLEKEVKELEELKEEIE---------------ELEKELESLEGSKRKLEEKIRELEERIEELK 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1118 ARIEDLE---RAISSVEPKVIVKEVKKVEQDPgLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQE 1194
Cdd:PRK03918 273 KEIEELEekvKELKELKEKAEEYIKLSEFYEE-YLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1195 RVHEIFQVDPETEQEITRLKAKLQEMAGKRSGveKEVEKLLPDLEVLRAQKPTVEykevtqevvrherspevlREIDRLK 1274
Cdd:PRK03918 352 KRLEELEERHELYEEAKAKKEELERLKKRLTG--LTPEKLEKELEELEKAKEEIE------------------EEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1275 AQLNELVNSHGRSQEQLIRLQGerdewrrerAKVETKTVSKEVVRHEKDPVLEK---EAERLRQEVREAAQKRRAAEDAV 1351
Cdd:PRK03918 412 ARIGELKKEIKELKKAIEELKK---------AKGKCPVCGRELTEEHRKELLEEytaELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1352 YELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLR--------EEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLL 1423
Cdd:PRK03918 483 RELEKVLKKESELIKLKELAEQLKELEEKLKKYNleelekkaEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1424 SFQEDRSKKLA-VERELR--------QLTLRIQELEKrpptvqekiIMEEVVKLEKDP----DLEKSTEALRWDLDQEKT 1490
Cdd:PRK03918 563 KKLDELEEELAeLLKELEelgfesveELEERLKELEP---------FYNEYLELKDAEkeleREEKELKKLEEELDKAFE 633
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 1491 QVTELNRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKDRVLEDERARVWEMLNR 1545
Cdd:PRK03918 634 ELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKR 688
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
481-1280 |
1.10e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.46 E-value: 1.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 481 LASELQALKQKLATVQSRLKASAVESLRpsqqapsgsdlANPQAQKLLTQMTRLDGDLGQIERQVLAWARAPLSRPTPLE 560
Cdd:TIGR02168 230 LVLRLEELREELEELQEELKEAEEELEE-----------LTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS 298
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 561 DLEGRIHSHEgtaQRLQSLGTEKETAQKECEAFLSTRpvgpaaLQLPVALNSVKNKFSDVQVLCSLYGEKAKAAL----D 636
Cdd:TIGR02168 299 RLEQQKQILR---ERLANLERQLEELEAQLEELESKL------DELAEELAELEEKLEELKEELESLEAELEELEaeleE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 637 LERQIQDADRVIRGFEATLV----QEAPIPAEPGALQERVSELQRQRRELLEQQTCVLRlhralKASEHACAALQNNFQE 712
Cdd:TIGR02168 370 LESRLEELEEQLETLRSKVAqlelQIASLNNEIERLEARLERLEDRRERLQQEIEELLK-----KLEEAELKELQAELEE 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 713 FCQDLPRQQRQVRALTDRYHAVGDQLDLREKVVQDAALTYQQFKNCKDNLSSWLEHLprsqvrpSDGPSQIAYKLQAQKR 792
Cdd:TIGR02168 445 LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENL-------EGFSEGVKALLKNQSG 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 793 LT-------QEIQSRERDRATashLSQALQAALQDYELQ-ADTYRcsleptLAVSAPKRP---RVAPLQES------IQA 855
Cdd:TIGR02168 518 LSgilgvlsELISVDEGYEAA---IEAALGGRLQAVVVEnLNAAK------KAIAFLKQNelgRVTFLPLDsikgteIQG 588
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 856 QEKNLAKAYTEVAAAQQQLLQQLEFARKMLE------------------KKELSE---------DIRRTHDAKQGSESPA 908
Cdd:TIGR02168 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddldnalelAKKLRPgyrivtldgDLVRPGGVITGGSAKT 668
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 909 QAG-----RESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEfyRDPQLEGSLSRVKAQVEEEG 983
Cdd:TIGR02168 669 NSSilerrREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR--QISALRKDLARLEAEVEQLE 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 984 KRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVErdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLAL 1063
Cdd:TIGR02168 747 ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE----LEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1064 EKREVdvkekvvvkevvkveknlEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEpkvivkevkkvE 1143
Cdd:TIGR02168 823 RERLE------------------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE-----------S 873
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1144 QDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKysVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGk 1223
Cdd:TIGR02168 874 ELEALLNERASLEEALALLRSELEELSEELRELESK--RSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS- 950
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*...
gi 156104874 1224 rsgvekevekllpdlevlraqkptVEYKEVTQEVVRHERSPEVLR-EIDRLKAQLNEL 1280
Cdd:TIGR02168 951 ------------------------LTLEEAEALENKIEDDEEEARrRLKRLENKIKEL 984
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
559-1339 |
3.28e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 58.91 E-value: 3.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 559 LEDLEGRIHSHEGTAQRLQSLGTEKETAQKECEAFLStrpvgpaalQLPVALNSVKNKFSDVQvlcSLYGEKAKAALDLE 638
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLE---------ELRLEVSELEEEIEELQ---KELYALANEISRLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 639 RQIQDADRVIRGFEATLVQeapipaepgaLQERVSELQRQRRELLEQqtcvlrlhraLKASEHACAALQNNFQEFCQDLP 718
Cdd:TIGR02168 302 QQKQILRERLANLERQLEE----------LEAQLEELESKLDELAEE----------LAELEEKLEELKEELESLEAELE 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 719 RQQRQVRALTDRYHAVGDQLdlrEKVVQDAALTYQQFKNCKDNLSSWLEHLPRSQVRpsdgpsqiayklqaQKRLTQEIQ 798
Cdd:TIGR02168 362 ELEAELEELESRLEELEEQL---ETLRSKVAQLELQIASLNNEIERLEARLERLEDR--------------RERLQQEIE 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 799 SrerdratasHLSQALQAALQDYELQADTyrcsLEPTLAVSAPKRPRVAPLQESIQAQEKNLAKAYTEVAAAQQQLLQQL 878
Cdd:TIGR02168 425 E---------LLKKLEEAELKELQAELEE----LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 879 EFARKMLEKKE-LSEDIRRThdAKQGSESPAQAGRESEALKAQLEEER---------------KRVARVQHELEAQRSQL 942
Cdd:TIGR02168 492 DSLERLQENLEgFSEGVKAL--LKNQSGLSGILGVLSELISVDEGYEAaieaalggrlqavvvENLNAAKKAIAFLKQNE 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 943 LQLRTQRPLERLE--EKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQA---------DLEVAAQKVVQLESKRK--T 1009
Cdd:TIGR02168 570 LGRVTFLPLDSIKgtEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYllggvlvvdDLDNALELAKKLRPGYRivT 649
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1010 MQPHLLTKEVTQVERDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMV 1089
Cdd:TIGR02168 650 LDGDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQIS 729
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1090 ---KAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTKN 1166
Cdd:TIGR02168 730 alrKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR 809
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1167 ATLARELSDLHSKYSVVEkqrpkvQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKP 1246
Cdd:TIGR02168 810 AELTLLNEEAANLRERLE------SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1247 TVEYKEVTQEVVRHERSP---EVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWR---RERAKVETKTVSKEVVRH 1320
Cdd:TIGR02168 884 SLEEALALLRSELEELSEelrELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQerlSEEYSLTLEEAEALENKI 963
|
810 820
....*....|....*....|
gi 156104874 1321 EKDP-VLEKEAERLRQEVRE 1339
Cdd:TIGR02168 964 EDDEeEARRRLKRLENKIKE 983
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1894-1931 |
8.57e-08 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 49.79 E-value: 8.57e-08
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1894 QRLLNAQKAFTGIEDPVTKKRLSVGEAVQKGWMPRESV 1931
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
228-415 |
1.21e-07 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 54.37 E-value: 1.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 228 LYTHLQGCTRQLSALAEQQRRILQQDwsDLMADPAGVRREYEHFK--QHELLSQEQSVNQLEDDGERMVELRHPAVGPIQ 305
Cdd:cd00176 1 KLQQFLRDADELEAWLSEKEELLSST--DYGDDLESVEALLKKHEalEAELAAHEERVEALNELGEQLIEEGHPDAEEIQ 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 306 AHQEALKMEWQNFLNLCICQETQLQHVEDYRRFQEEADSVSQTLAKLNSNLDakySPAPGGPPGAPTELLQQLEAEEKRL 385
Cdd:cd00176 79 ERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALA---SEDLGKDLESVEELLKKHKELEEEL 155
|
170 180 190
....*....|....*....|....*....|
gi 156104874 386 avtERATGDLQRRSRDVAPLPQRRNPPQQP 415
Cdd:cd00176 156 ---EAHEPRLKSLNELAEELLEEGHPDADE 182
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1935-1972 |
1.47e-07 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 49.25 E-value: 1.47e-07
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1935 LQVQHLTGGLIDPKRTGRIPIQQALLSGMISEELAQLL 1972
Cdd:pfam00681 2 LEAQAATGGIIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1148-1411 |
1.63e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 56.67 E-value: 1.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1148 LLQESSRLRSLLEEERTKNATLARELSDLHSKYSVV---EKQRPKVQLQERVHEIFQVdpeTEQEITRLKAKLQEMAGKR 1224
Cdd:pfam17380 308 KAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAmerERELERIRQEERKRELERI---RQEEIAMEISRMRELERLQ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1225 SGVEKEVEKLLPDLEVLRAQK-------PTVEYKEVTQEVVRHERSPEVLREIDRLKAQ----LNELVNSHGRSQEQLIR 1293
Cdd:pfam17380 385 MERQQKNERVRQELEAARKVKileeerqRKIQQQKVEMEQIRAEQEEARQREVRRLEEErareMERVRLEEQERQQQVER 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1294 LQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAE-------DAVYELQSKRLLLERRKP 1366
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEERKQAMIEEERKRKLLEkemeerqKAIYEEERRREAEEERRK 544
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 156104874 1367 EEKVVVQEVVVTQKDpKLREEHSRLSGSLDEEVGRRRQLELEVQQ 1411
Cdd:pfam17380 545 QQEMEERRRIQEQMR-KATEERSRLEAMEREREMMRQIVESEKAR 588
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
914-1470 |
2.92e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 2.92e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 914 SEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQ-----RPLERLEE-KEVVEFYR--DPQLEGSLSRVKAQVEEEGKR 985
Cdd:PRK03918 188 TENIEELIKEKEKELEEVLREINEISSELPELREElekleKEVKELEElKEEIEELEkeLESLEGSKRKLEEKIRELEER 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 986 RAGLQADLEVAAQKVVQLESKRKTMQPHL----LTKEVTQVERDpgLDSQAAQLRIQIQQLRGEDAVIS---ARLEGLKK 1058
Cdd:PRK03918 268 IEELKKEIEELEEKVKELKELKEKAEEYIklseFYEEYLDELRE--IEKRLSRLEEEINGIEERIKELEekeERLEELKK 345
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1059 ELLALEKREVDVKEKVVVkevvkveknLEMVKAaqalrLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKE 1138
Cdd:PRK03918 346 KLKELEKRLEELEERHEL---------YEEAKA-----KKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKIT 411
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1139 VKKVeqdpGLLQESSRLRSLLEE---ERTKNATLARELSDLHSKYSVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKA 1215
Cdd:PRK03918 412 ARIG----ELKKEIKELKKAIEElkkAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEK 487
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1216 KLQ---EMAGKRSGVE--KEVEKLLPDLEVLRAQKPTVEYKEVtqevvrHERSPEVLREIDRLKAQLNELVNSHGRSQEq 1290
Cdd:PRK03918 488 VLKkesELIKLKELAEqlKELEEKLKKYNLEELEKKAEEYEKL------KEKLIKLKGEIKSLKKELEKLEELKKKLAE- 560
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1291 lirLQGERDEWRRERAKVETKTvskevvrHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKrllLERRKpeekv 1370
Cdd:PRK03918 561 ---LEKKLDELEEELAELLKEL-------EELGFESVEELEERLKELEPFYNEYLELKDAEKELERE---EKELK----- 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1371 vvqevvvtqkdpKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEgllsFQEDRSKKLAVERELRQLTLRIQELE 1450
Cdd:PRK03918 623 ------------KLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE----YEELREEYLELSRELAGLRAELEELE 686
|
570 580
....*....|....*....|..
gi 156104874 1451 KRPPTVQEKI--IMEEVVKLEK 1470
Cdd:PRK03918 687 KRREEIKKTLekLKEELEEREK 708
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1087-1679 |
6.54e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 6.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1087 EMVKAAQALRLQMEEDAARRKQAEEAVAKLQAR-IEDLERAIssvepKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTK 1165
Cdd:PTZ00121 1144 EARKAEDAKRVEIARKAEDARKAEEARKAEDAKkAEAARKAE-----EVRKAEELRKAEDARKAEAARKAEEERKAEEAR 1218
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1166 NATLARELSDLHSkysvVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQK 1245
Cdd:PTZ00121 1219 KAEDAKKAEAVKK----AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADE 1294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1246 PtveykevtqevvrheRSPEVLREIDRLKAQLNElvnshGRSQEQLiRLQGERDEWRRERAKVETKTVSKevvrheKDPV 1325
Cdd:PTZ00121 1295 A---------------KKAEEKKKADEAKKKAEE-----AKKADEA-KKKAEEAKKKADAAKKKAEEAKK------AAEA 1347
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1326 LEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEhsrlsgsldeeVGRRRQL 1405
Cdd:PTZ00121 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADE-----------LKKAAAA 1416
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1406 ELEVQQLRAGVEEQEgllsfQEDRSKKLAVERElrqltlRIQELEKRpptVQEKIIMEEVVKleKDPDLEKSTEALRwdL 1485
Cdd:PTZ00121 1417 KKKADEAKKKAEEKK-----KADEAKKKAEEAK------KADEAKKK---AEEAKKAEEAKK--KAEEAKKADEAKK--K 1478
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1486 DQEKTQVTELNRECKNLQVQIDVLQKaKSQEKTIYKEVIRVQKDRVLEDERARvwemlNRERTARQAREEEARRLRERID 1565
Cdd:PTZ00121 1479 AEEAKKADEAKKKAEEAKKKADEAKK-AAEAKKKADEAKKAEEAKKADEAKKA-----EEAKKADEAKKAEEKKKADELK 1552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1566 RAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLL----SQKTESERQKAAQ-------- 1633
Cdd:PTZ00121 1553 KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMkaeeAKKAEEAKIKAEElkkaeeek 1632
|
570 580 590 600
....*....|....*....|....*....|....*....|....*..
gi 156104874 1634 -RGQELSRLEAAILREKDQIYEKERTLRDLHAKVSREELSQETQTRE 1679
Cdd:PTZ00121 1633 kKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE 1679
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1856-1889 |
6.58e-07 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 47.48 E-value: 6.58e-07
10 20 30
....*....|....*....|....*....|....
gi 156104874 1856 QKLLEAQAATGGIVDLLSRERYSVHKAMERGLIE 1889
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLID 34
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
850-1402 |
1.07e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 1.07e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 850 QESIQAQEKNLAKAYTEVAAAQQQLLQQLEFARKMLEKKElSEDIRRTHDAKQGSES-PAQAGRESEALKAQLEEERK-R 927
Cdd:PTZ00121 1240 EEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK-ADELKKAEEKKKADEAkKAEEKKKADEAKKKAEEAKKaD 1318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 928 VARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSRVKA--QVEEEGKRRAglqADLEVAAQKVVQLES 1005
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAaeKKKEEAKKKA---DAAKKKAEEKKKADE 1395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1006 KRKTMQPHllTKEVTQVERDPGLDSQAAQLRIQIQQLRGED-----AVISARLEGLKKELLALEKREVDVKEKVVVKEVV 1080
Cdd:PTZ00121 1396 AKKKAEED--KKKADELKKAAAAKKKADEAKKKAEEKKKADeakkkAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1081 KVEKNLEMVKAAQALRLQMEEdaaRRKQAEEAVAKLQA--RIEDLERAISSVEPKVIVKEVKKVEQDpgllqessRLRSL 1158
Cdd:PTZ00121 1474 EAKKKAEEAKKADEAKKKAEE---AKKKADEAKKAAEAkkKADEAKKAEEAKKADEAKKAEEAKKAD--------EAKKA 1542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1159 LEEERTKNATLARELSDLHSKYSVVEKQRP---KVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLL 1235
Cdd:PTZ00121 1543 EEKKKADELKKAEELKKAEEKKKAEEAKKAeedKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKA 1622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1236 PDLEVLRAQKPTVEY--KEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRlqGERDEWRRERA---KVET 1310
Cdd:PTZ00121 1623 EELKKAEEEKKKVEQlkKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKK--AEEDEKKAAEAlkkEAEE 1700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1311 KTVSKEVVRHEKDPVleKEAERLRQEvrEAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHSR 1390
Cdd:PTZ00121 1701 AKKAEELKKKEAEEK--KKAEELKKA--EEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKE 1776
|
570
....*....|..
gi 156104874 1391 LSGSLDEEVGRR 1402
Cdd:PTZ00121 1777 KEAVIEEELDEE 1788
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1191-1666 |
1.69e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.53 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1191 QLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEV---EKLLPDLEVLRAQKPTVEYKEVTQEvvrhERSPEVL 1267
Cdd:PRK03918 190 NIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVkelEELKEEIEELEKELESLEGSKRKLE----EKIRELE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1268 REIDRLKAQLNELVNSHGRSQE------QLIRLQGERDEWRRERAKVEtKTVSKEVVRHEKDPVLEKEAERLRQEVREAA 1341
Cdd:PRK03918 266 ERIEELKKEIEELEEKVKELKElkekaeEYIKLSEFYEEYLDELREIE-KRLSRLEEEINGIEERIKELEEKEERLEELK 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1342 QKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDP---------KLREEHSRLSGSLDEEVGRRRQLELEVQQL 1412
Cdd:PRK03918 345 KKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTpeklekeleELEKAKEEIEEEISKITARIGELKKEIKEL 424
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1413 RAGVEEQE---------GLLSFQEDRSKKLA--------VERELRQLTLRIQELEKRPPTVQEKIIME-EVVKLEKDPD- 1473
Cdd:PRK03918 425 KKAIEELKkakgkcpvcGRELTEEHRKELLEeytaelkrIEKELKEIEEKERKLRKELRELEKVLKKEsELIKLKELAEq 504
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1474 ---LEKSTEALRW-DLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKD-RVLEDERARVwemlnrERT 1548
Cdd:PRK03918 505 lkeLEEKLKKYNLeELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKlDELEEELAEL------LKE 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1549 ARQAREEEARRLRERIDRAETLGRTWSR---EESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTE 1625
Cdd:PRK03918 579 LEELGFESVEELEERLKELEPFYNEYLElkdAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE 658
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 156104874 1626 SERQKAAQR----GQELSRLEAAILREKDQIYEKERTLRDLHAKV 1666
Cdd:PRK03918 659 EEYEELREEylelSRELAGLRAELEELEKRREEIKKTLEKLKEEL 703
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1153-1680 |
2.26e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1153 SRLRSLLEEERTKNATLARELSDLHSKYSVV--EKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKE 1230
Cdd:pfam15921 299 SQLEIIQEQARNQNSMYMRQLSDLESTVSQLrsELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQ 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1231 VEKLLPDLEvlRAQKPTVEYKEVTQEVVRHERSPEVlrEIDRLKAQLNELVNSHGRSQEQLIRLQGE-RDEWRRERAKVE 1309
Cdd:pfam15921 379 LQKLLADLH--KREKELSLEKEQNKRLWDRDTGNSI--TIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQ 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1310 TKTVSKEVVRhEKDPVLEKEAERLRQevreaaqkrraaedAVYELQSKRLLLERRKpeekvvvqeVVVTQKDPKLREEHS 1389
Cdd:pfam15921 455 GKNESLEKVS-SLTAQLESTKEMLRK--------------VVEELTAKKMTLESSE---------RTVSDLTASLQEKER 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1390 RLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQ-EDRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKL 1468
Cdd:pfam15921 511 AIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQtECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQV 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1469 EKdPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKDrvLEDERArvwEMLNRERT 1548
Cdd:pfam15921 591 EK-AQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKD--IKQERD---QLLNEVKT 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1549 ARQAREEEArrlreriDRAETLGRTWSREESELQRARDQADQECGRLQQElraLERQKQQQTLQLQEESKLLSQKTESER 1628
Cdd:pfam15921 665 SRNELNSLS-------EDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSE---LEQTRNTLKSMEGSDGHAMKVAMGMQK 734
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 1629 QKAAQRGQelsrLEAaiLREKDQIYEKERTLRDLHAKVSREE---LSQETQTRET 1680
Cdd:pfam15921 735 QITAKRGQ----IDA--LQSKIQFLEEAMTNANKEKHFLKEEknkLSQELSTVAT 783
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1190-1517 |
3.38e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.43 E-value: 3.38e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1190 VQLQERVHEIFQVDPETEQEITRLKAKLQEMAgkrsgveKEVEKLLPDLEVLRAQKPTVEyKEVTQEVVRHERSPEVLRE 1269
Cdd:pfam17380 278 VQHQKAVSERQQQEKFEKMEQERLRQEKEEKA-------REVERRRKLEEAEKARQAEMD-RQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1270 IDRLKAQLNELVNSHGRSQE---------QLIRLQGERDEwRRERakvetktVSKEVVRHEKDPVLEKEAERLRQEVREA 1340
Cdd:pfam17380 350 LERIRQEERKRELERIRQEEiameisrmrELERLQMERQQ-KNER-------VRQELEAARKVKILEEERQRKIQQQKVE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1341 AQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREehsrlsgslDEEVGRRRQLELEVQQL-RAGVEEQ 1419
Cdd:pfam17380 422 MEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQ---------QEEERKRKKLELEKEKRdRKRAEEQ 492
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1420 EGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEKiimEEVVKLEKDPDLEKSTEAlRWDLDQEKTQVTELNREC 1499
Cdd:pfam17380 493 RRKILEKELEERKQAMIEEERKRKLLEKEMEERQKAIYEE---ERRREAEEERRKQQEMEE-RRRIQEQMRKATEERSRL 568
|
330
....*....|....*...
gi 156104874 1500 KNLQVQIDVLQKAKSQEK 1517
Cdd:pfam17380 569 EAMEREREMMRQIVESEK 586
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
629-1451 |
4.91e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 4.91e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 629 EKAKAALDLERQIQDADRVIRGFEATLVQeapIPAEPGALQERVSELQRQRRELLEqqtcvlrlhRALKASEHACAALQN 708
Cdd:TIGR02169 227 ELLKEKEALERQKEAIERQLASLEEELEK---LTEEISELEKRLEEIEQLLEELNK---------KIKDLGEEEQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 709 NFQEFCQDLPRQQRQVRALTDRyhavgdqldlrekvVQDAALTYQQFKNCKDNLSSWLEHLPRS----QVRPSDGPSQIA 784
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKERE--------------LEDAEERLAKLEAEIDKLLAEIEELEREieeeRKRRDKLTEEYA 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 785 YKLQAQKRLTQEIQSRERDRATASHLSQALQAALQDYELQADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQEKNLAKAY 864
Cdd:TIGR02169 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 865 TEVaaaqqqllqqlEFARKMLEKKElsedirrtHDAKQGSESPAQAGRESEALKA---QLEEERKRVARVQHELEAQRSQ 941
Cdd:TIGR02169 441 EEK-----------EDKALEIKKQE--------WKLEQLAADLSKYEQELYDLKEeydRVEKELSKLQRELAEAEAQARA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 942 LLQlrtqrplERLEEKEVVEFyrdpqLEGSLSRVKAQVEEEGKRRAGLQADLEVA---------------AQKVVQLESK 1006
Cdd:TIGR02169 502 SEE-------RVRGGRAVEEV-----LKASIQGVHGTVAQLGSVGERYATAIEVAagnrlnnvvveddavAKEAIELLKR 569
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1007 RK----TMQPhlLTKeVTQVERDPGLDSQAAQLRIQIQQLRGED----AVISARLEGLKKELLALEKREVDVKEKVVVKE 1078
Cdd:TIGR02169 570 RKagraTFLP--LNK-MRDERRDLSILSEDGVIGFAVDLVEFDPkyepAFKYVFGDTLVVEDIEAARRLMGKYRMVTLEG 646
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1079 VVKVEKNLeMVKAAQALRlqmeEDAARRKQAEEAVAKLQARIEDLERAISSvepkvivkevkkveqdpgLLQESSRLRSL 1158
Cdd:TIGR02169 647 ELFEKSGA-MTGGSRAPR----GGILFSRSEPAELQRLRERLEGLKRELSS------------------LQSELRRIENR 703
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1159 LEEERTKNATLARELSDLHSKYSVVEKQRPKV-----QLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEK 1233
Cdd:TIGR02169 704 LDELSQELSDASRKIGEIEKEIEQLEQEEEKLkerleELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1234 LLPDLEVLRAQKPTVEYKEVTQEVVRHErspEVLREIDR-------LKAQLNELVNShgrSQEQLIRLQGERDEWRRERA 1306
Cdd:TIGR02169 784 LEARLSHSRIPEIQAELSKLEEEVSRIE---ARLREIEQklnrltlEKEYLEKEIQE---LQEQRIDLKEQIKSIEKEIE 857
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1307 -----KVETKTVSKEVVRHEKDpvLEKEAERLRQEVREAAQKRRAAEDAVYELQS----KRLLLERRKPEEKVVVQEVVV 1377
Cdd:TIGR02169 858 nlngkKEELEEELEELEAALRD--LESRLGDLKKERDELEAQLRELERKIEELEAqiekKRKRLSELKAKLEALEEELSE 935
|
810 820 830 840 850 860 870
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 156104874 1378 TQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQL-----RAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEK 1451
Cdd:TIGR02169 936 IEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALepvnmLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
666-1295 |
5.14e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 5.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 666 GALQERVSELQRQRRELLEQQTCVLRLHRALKASEHACAALQNNFQEFcQDLPRQQRQVRALTDRYHAVGDQLDLREKVV 745
Cdd:TIGR00618 263 KQLRARIEELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQ-RIHTELQSKMRSRAKLLMKRAAHVKQQSSIE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 746 QDAALTYQQFKNCKDNlsswlehlprsqVRPSDGPSQIAYKLQAQKRLTQEIQSRERDRATASHLSQALQAALqdyeLQA 825
Cdd:TIGR00618 342 EQRRLLQTLHSQEIHI------------RDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKEL----DIL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 826 DTYRCSLEPTLAVSAPKRPRVAPLQESIQAQEKNLAKAYTEVAAAQQQLLQQLEFARKMLEKkeLSEDIRRTHDAKQGSE 905
Cdd:TIGR00618 406 QREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS--LKEREQQLQTKEQIHL 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 906 SPAQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLR-TQRPLERLEekevvefYRDPQLEGSLSRVKAQVEEEGK 984
Cdd:TIGR00618 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGpLTRRMQRGE-------QTYAQLETSEEDVYHQLTSERK 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 985 RRAGLQADLEVAAQKVVQLESKRKTMQPHLltkEVTQVERDPGLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALE 1064
Cdd:TIGR00618 557 QRASLKEQMQEIQQSFSILTQCDNRSKEDI---PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLH 633
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1065 KREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEq 1144
Cdd:TIGR00618 634 LQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH- 712
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1145 dpglLQESSRLRSLLEE-ERTKNATLARELSDLHSKYSVVEKQRPKvQLQERVHEIFQVDPETEQEITRLkAKLQEMAGK 1223
Cdd:TIGR00618 713 ----IEEYDREFNEIENaSSSLGSDLAAREDALNQSLKELMHQART-VLKARTEAHFNNNEEVTAALQTG-AELSHLAAE 786
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 156104874 1224 RSGVEKEVEKLLPDLEVLRAQ-----KPTVEYKEVTQEVVRHERSpEVLREIDRLKAQLNELVNSHGRSQEQLIRLQ 1295
Cdd:TIGR00618 787 IQFFNRLREEDTHLLKTLEAEigqeiPSDEDILNLQCETLVQEEE-QFLSRLEEKSATLGEITHQLLKYEECSKQLA 862
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
1109-1689 |
5.19e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.89 E-value: 5.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1109 AEEAVAKLQARIEDLERAISSVEPKVIVKEVKKV--EQDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQ 1186
Cdd:TIGR00618 210 TPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRA 289
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1187 RPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGV------EKEVEKLLPDLEVLRAQKPTVEyKEVTQEVVRH 1260
Cdd:TIGR00618 290 RKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRaahvkqQSSIEEQRRLLQTLHSQEIHIR-DAHEVATSIR 368
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1261 ERSPEVLREIDRLKAQ------LNELVNSHGRSQEQLIRLQG-------ERDEWRRERAKVETKTVSKEVVRHEKDPVLE 1327
Cdd:TIGR00618 369 EISCQQHTLTQHIHTLqqqkttLTQKLQSLCKELDILQREQAtidtrtsAFRDLQGQLAHAKKQQELQQRYAELCAAAIT 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1328 KEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREE-------HSRLSGSLDEEVG 1400
Cdd:TIGR00618 449 CTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGscihpnpARQDIDNPGPLTR 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1401 RRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAverelRQLTLRIQELEKRPPTVQE-KIIMEEVVKLEKD--PDLEKS 1477
Cdd:TIGR00618 529 RMQRGEQTYAQLETSEEDVYHQLTSERKQRASLK-----EQMQEIQQSFSILTQCDNRsKEDIPNLQNITVRlqDLTEKL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1478 TEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEK----------TIYKEVIRVQKDRVLEDErARVWEMLNRER 1547
Cdd:TIGR00618 604 SEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALkltalhalqlTLTQERVREHALSIRVLP-KELLASRQLAL 682
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1548 TARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESE 1627
Cdd:TIGR00618 683 QKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTEA 762
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 156104874 1628 RQKAA-------QRGQELSRLEAAILREKDQIYEKERTLRDLHAKVSRE--------ELSQET-QTRETNLSTKISIL 1689
Cdd:TIGR00618 763 HFNNNeevtaalQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEipsdedilNLQCETlVQEEEQFLSRLEEK 840
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
879-1422 |
7.11e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.22 E-value: 7.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 879 EFARKMLEKKELSEDIRRTHDAKQGSESPAQagrESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQRP-----LER 953
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEVK---ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEelkkeIEE 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 954 LEEK---------------EVVEFYRdpQLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPhlLTKE 1018
Cdd:PRK03918 278 LEEKvkelkelkekaeeyiKLSEFYE--EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE--LEKR 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1019 VTQVERDPGLDSQAAQLRIQIQQLRGEDAVISarLEGLKKELLALEKREVDVKEKVVVKEVVKVeknlEMVKAAQALRLQ 1098
Cdd:PRK03918 354 LEELEERHELYEEAKAKKEELERLKKRLTGLT--PEKLEKELEELEKAKEEIEEEISKITARIG----ELKKEIKELKKA 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1099 MEE-DAARRK-----------QAEEAVAKLQARIEDLERAISSVEPKVIVkevkkveqdpgLLQESSRLRSLLEEERT-- 1164
Cdd:PRK03918 428 IEElKKAKGKcpvcgrelteeHRKELLEEYTAELKRIEKELKEIEEKERK-----------LRKELRELEKVLKKESEli 496
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1165 KNATLARELSDLHSKYSVVEKQRPKvqlqervheifqvdpETEQEITRLKAKLQEMAGKRSGVEKEVEKllpdLEVLRAQ 1244
Cdd:PRK03918 497 KLKELAEQLKELEEKLKKYNLEELE---------------KKAEEYEKLKEKLIKLKGEIKSLKKELEK----LEELKKK 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1245 KPTVEYKEVTQEvvrhERSPEVLREIDRLKAQLNELVNSHGRSQEQL----IRLQGERDEWRRERAKVEtKTVSKEVVRH 1320
Cdd:PRK03918 558 LAELEKKLDELE----EELAELLKELEELGFESVEELEERLKELEPFyneyLELKDAEKELEREEKELK-KLEEELDKAF 632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1321 EKDPVLEKEAERLRQEVREAaqKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVvtqkdpKLREEHSRLSGSLDEEVG 1400
Cdd:PRK03918 633 EELAETEKRLEELRKELEEL--EKKYSEEEYEELREEYLELSRELAGLRAELEELE------KRREEIKKTLEKLKEELE 704
|
570 580
....*....|....*....|..
gi 156104874 1401 RRRQLELEVQQLRAGVEEQEGL 1422
Cdd:PRK03918 705 EREKAKKELEKLEKALERVEEL 726
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
629-1132 |
8.94e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.09 E-value: 8.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 629 EKAKAALDLERQIQDADRVIRGFEATLVQEApipAEPGALQERVSELQRQRRELLEQqtcVLRLHRALKASEHACAALQN 708
Cdd:COG1196 243 ELEAELEELEAELEELEAELAELEAELEELR---LELEELELELEEAQAEEYELLAE---LARLEQDIARLEERRRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 709 NFQEFCQDLPRQQRQVRALTDRYHAVGDQLDLREKVVQDAALTYQQFKN-----------CKDNLSSWLEHLPRSQVRPS 777
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEalleaeaelaeAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 778 DGPSQIAYKLQAQKRLTQEIQSRERDRATASHLSQALQAALQDYELQADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQE 857
Cdd:COG1196 397 ELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 858 KNLAKAYTEVAAAQQQLLQQLEFARKM---------LEKKELSEDIRRTHDAKQGSESPAQAGRESEALKAQLEEERKRV 928
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYegflegvkaALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDD 556
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 929 ARVQHELEAQRSQLLQLRTQRPLERLEEKEVVEFYRDPQLEGSLSR-VKAQVEEEGKRRAGLQADLEVAAQKVVQLESKR 1007
Cdd:COG1196 557 EVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDlVASDLREADARYYVLGDTLLGRTLVAARLEAAL 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1008 KTMQPHLLTKEVTQVERDPGLDSQA-----------AQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVV 1076
Cdd:COG1196 637 RRAVTLAGRLREVTLEGEGGSAGGSltggsrrellaALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 1077 KEVVKVEKNLEMVKAAQALRLQME---------EDAARRKQAEEAVAKLQARIEDLERAISSVEP 1132
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEElleeeelleEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1153-1365 |
2.63e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 2.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1153 SRLRSLLEEERTKNATL------ARELSDLHSKYSVVEKQRPKVQLQERVHEIFQVdpetEQEITRLKAKLQEMAGKRSG 1226
Cdd:COG4913 238 ERAHEALEDAREQIELLepirelAERYAAARERLAELEYLRAALRLWFAQRRLELL----EAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1227 VEKEVEKLLPDLEVLRAQKPTVEYKEVTQevvrherspeVLREIDRLKAQLNELVNSHGRSQEQLIRLQ----GERDEWR 1302
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRLEQ----------LEREIERLERELEERERRRARLEALLAALGlplpASAEEFA 383
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156104874 1303 RERAKVetktvskevvrHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRK 1365
Cdd:COG4913 384 ALRAEA-----------AALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
678-1060 |
3.46e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 678 QRRELLEQqtcVLRLHRALKASEHACAALQNNFQEFCQDLPRQQRQVRALTDRYHAVGDQLDLrekvVQDAALTYQQFKN 757
Cdd:COG3096 279 ERRELSER---ALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNL----VQTALRQQEKIER 351
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 758 CKDNLSSwlehlprsqvrpsdgpsqIAYKLQAQKRLTQEIQSRERDRATASHLSQA----LQAALQDYE----------- 822
Cdd:COG3096 352 YQEDLEE------------------LTERLEEQEEVVEEAAEQLAEAEARLEAAEEevdsLKSQLADYQqaldvqqtrai 413
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 823 -----LQA--DTYRCSLEPTLAVSApkrprVAPLQESIQAQEKNLakayTEVAAAQQQLLQQLEFARKMLEKK-ELSEDI 894
Cdd:COG3096 414 qyqqaVQAleKARALCGLPDLTPEN-----AEDYLAAFRAKEQQA----TEEVLELEQKLSVADAARRQFEKAyELVCKI 484
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 895 ------RRTHDA-----KQGSESPAQAGREsEALKAQLEEERKRVARvQHELEAQRSQLLQlRTQRPLERLEEKEVVEfy 963
Cdd:COG3096 485 ageverSQAWQTarellRRYRSQQALAQRL-QQLRAQLAELEQRLRQ-QQNAERLLEEFCQ-RIGQQLDAAEELEELL-- 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 964 rdPQLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESK----------------------------RKTMQpHLL 1015
Cdd:COG3096 560 --AELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARapawlaaqdalerlreqsgealadsqevTAAMQ-QLL 636
|
410 420 430 440
....*....|....*....|....*....|....*....|....*.
gi 156104874 1016 TKEV-TQVERDPgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKEL 1060
Cdd:COG3096 637 EREReATVERDE-LAARKQALESQIERLSQPGGAEDPRLLALAERL 681
|
|
| SPEC |
cd00176 |
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members ... |
156-330 |
8.11e-05 |
|
Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Pssm-ID: 238103 [Multi-domain] Cd Length: 213 Bit Score: 45.90 E-value: 8.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 156 LEQKQKQVCAGQYGPGMAELEQQIAEHNILQKEIDAY----------GQQLRSLVGPDAATIR-------SQYRDLLKAA 218
Cdd:cd00176 16 LSEKEELLSSTDYGDDLESVEALLKKHEALEAELAAHeervealnelGEQLIEEGHPDAEEIQerleelnQRWEELRELA 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 219 SWRGQSLG---SLYTHLQGCTRQLSALAEQQRRILQQDWSDlmaDPAGVRREYEHFK--QHELLSQEQSVNQLEDDGERM 293
Cdd:cd00176 96 EERRQRLEealDLQQFFRDADDLEQWLEEKEAALASEDLGK---DLESVEELLKKHKelEEELEAHEPRLKSLNELAEEL 172
|
170 180 190
....*....|....*....|....*....|....*...
gi 156104874 294 VELRHPAVGP-IQAHQEALKMEWQNFLNLCICQETQLQ 330
Cdd:cd00176 173 LEEGHPDADEeIEEKLEELNERWEELLELAEERQKKLE 210
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
1033-1530 |
8.63e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 8.63e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1033 AQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVVKEVVKveknlEMVKAAQALRLQMEEDAARRKQAEEA 1112
Cdd:PRK03918 241 EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELK-----EKAEEYIKLSEFYEEYLDELREIEKR 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1113 VAKLQARIEDLERAISSVEPKVIVKEVKKVEQDpGLLQESSRLrslleEERTKNATLARELSDLHSKYSVVEKQRPKVQL 1192
Cdd:PRK03918 316 LSRLEEEINGIEERIKELEEKEERLEELKKKLK-ELEKRLEEL-----EERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1193 QERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKllpdLEVLRAQKPTVEyKEVTQEvVRHERSPEVLREIDR 1272
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE----LKKAKGKCPVCG-RELTEE-HRKELLEEYTAELKR 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1273 LKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEK------EAERLRQEVREAAQKRRA 1346
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEElekkaeEYEKLKEKLIKLKGEIKS 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1347 AEDAV---YELQSKRLLLERRKPEEKVVVQEVVVtqkdpKLREEHSRLSGSLDEEVGR-----RRQLELE--VQQLRAGV 1416
Cdd:PRK03918 544 LKKELeklEELKKKLAELEKKLDELEEELAELLK-----ELEELGFESVEELEERLKElepfyNEYLELKdaEKELEREE 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1417 EEQEGLLSFQEDRSKKLA-VERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDpdleksTEALRWDLDQEKTQVTEL 1495
Cdd:PRK03918 619 KELKKLEEELDKAFEELAeTEKRLEELRKELEELEKKYSEEEYEELREEYLELSRE------LAGLRAELEELEKRREEI 692
|
490 500 510
....*....|....*....|....*....|....*
gi 156104874 1496 NRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKDR 1530
Cdd:PRK03918 693 KKTLEKLKEELEEREKAKKELEKLEKALERVEELR 727
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1264-1452 |
8.87e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 8.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1264 PEVLREIDRLKAQLNELVNSHGRS---QEQLIRLQGERDEWRRERAKVETKTVSKEVV-------RHEKDPVLEKEAERL 1333
Cdd:COG4913 221 PDTFEAADALVEHFDDLERAHEALedaREQIELLEPIRELAERYAAARERLAELEYLRaalrlwfAQRRLELLEAELEEL 300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1334 RQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDpKLREEHSRLSGSLDEEVGRRRQLEL------ 1407
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIE-RLERELEERERRRARLEALLAALGLplpasa 379
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 156104874 1408 --------EVQQLRAGVEEQEGLLS--FQEDRSKKLAVERELRQLTLRIQELEKR 1452
Cdd:COG4913 380 eefaalraEAAALLEALEEELEALEeaLAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SPEC |
smart00150 |
Spectrin repeats; |
237-330 |
9.66e-05 |
|
Spectrin repeats;
Pssm-ID: 197544 [Multi-domain] Cd Length: 101 Bit Score: 43.47 E-value: 9.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 237 RQLSALAEQQRRILQQDwsDLMADPAGVRREYEHFK--QHELLSQEQSVNQLEDDGERMVELRHPAVGPIQAHQEALKME 314
Cdd:smart00150 8 DELEAWLEEKEQLLASE--DLGKDLESVEALLKKHEafEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNER 85
|
90
....*....|....*.
gi 156104874 315 WQNFLNLCICQETQLQ 330
Cdd:smart00150 86 WEELKELAEERRQKLE 101
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
795-1549 |
1.19e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 795 QEIQSRERDRATASHLsQALQAALQDYEL-----QADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQEKNLAKAYTEVAA 869
Cdd:TIGR02169 198 QQLERLRREREKAERY-QALLKEKREYEGyellkEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEE 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 870 AQQQLLQQLE-----FARKMLEKKELSEDIRRTHDAKQGSESPAQAGR------------ESEALKAQLEEERKRVARVQ 932
Cdd:TIGR02169 277 LNKKIKDLGEeeqlrVKEKIGELEAEIASLERSIAEKERELEDAEERLakleaeidkllaEIEELEREIEEERKRRDKLT 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 933 HELEAQRSQLLQLRTQ-------------RPLERLEEKEVVEFYRDPqLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQK 999
Cdd:TIGR02169 357 EEYAELKEELEDLRAEleevdkefaetrdELKDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1000 VVQLESKRKTMQPHLLTKEvTQVERdpgLDSQAAQLRIQIQQLRGEDAVISARLEGLKKELLALEKREVDVKEKVVVKEV 1079
Cdd:TIGR02169 436 INELEEEKEDKALEIKKQE-WKLEQ---LAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRA 511
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1080 VKVEKN------------LEMVKAAQAL--------RLQM-----EEDAAR------RKQAEEA----VAKLQARIEDLE 1124
Cdd:TIGR02169 512 VEEVLKasiqgvhgtvaqLGSVGERYATaievaagnRLNNvvvedDAVAKEaiellkRRKAGRAtflpLNKMRDERRDLS 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1125 R---------AISSVE-PKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTknATLARELSD-----------LHSKYSVV 1183
Cdd:TIGR02169 592 IlsedgvigfAVDLVEfDPKYEPAFKYVFGDTLVVEDIEAARRLMGKYRM--VTLEGELFEksgamtggsraPRGGILFS 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1184 EKQRPKVQ-LQERVHE-------IFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQkptVEYKEVTQ 1255
Cdd:TIGR02169 670 RSEPAELQrLRERLEGlkrelssLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKER---LEELEEDL 746
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1256 EVVRHERSpEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRhekdpvLEKEAERLRQ 1335
Cdd:TIGR02169 747 SSLEQEIE-NVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSR------IEARLREIEQ 819
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1336 EVREAAQKRRAAEDAVYELQSKRLLLERRKPEekvvvqevvvtqkdpkLREEHSRLSGSLDEEVGRRRQLELEVQQLRag 1415
Cdd:TIGR02169 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS----------------IEKEIENLNGKKEELEEELEELEAALRDLE-- 881
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1416 vEEQEGLLSFQEDRSKKL-AVERELRQLTLRIQELEKRPPTVQEK--IIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQV 1492
Cdd:TIGR02169 882 -SRLGDLKKERDELEAQLrELERKIEELEAQIEKKRKRLSELKAKleALEEELSEIEDPKGEDEEIPEEELSLEDVQAEL 960
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|....*..
gi 156104874 1493 TELNRECKNLQvqiDVLQKAKSQektiYKEVIRVQKDrvLEDERARvwemLNRERTA 1549
Cdd:TIGR02169 961 QRVEEEIRALE---PVNMLAIQE----YEEVLKRLDE--LKEKRAK----LEEERKA 1004
|
|
| Plectin |
pfam00681 |
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous ... |
1688-1716 |
1.36e-04 |
|
Plectin repeat; This family includes repeats from plectin, desmoplakin, envoplakin and bullous pemphigoid antigen.
Pssm-ID: 459901 Cd Length: 39 Bit Score: 40.77 E-value: 1.36e-04
10 20
....*....|....*....|....*....
gi 156104874 1688 ILEPETGKDMSPYEAYKRGIIDRGQYLQL 1716
Cdd:pfam00681 11 IIDPVTGERLSVEEAVKRGLIDPETAQKL 39
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
972-1363 |
1.46e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.46e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 972 LSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQverdpgldsQAAQLRIQIQQLRGEDAVISA 1051
Cdd:COG4717 76 LEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL---------QLLPLYQELEALEAELAELPE 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1052 RLEGLKKELLA-------LEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLE 1124
Cdd:COG4717 147 RLEELEERLEElreleeeLEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELE 226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1125 RAISSVEPKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTKNATLARELSDLH------SKYSVVEKQRPKVQLQERVHE 1198
Cdd:COG4717 227 EELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLflvlglLALLFLLLAREKASLGKEAEE 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1199 IFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEvlraqkptvEYKEVTQEVVRHERSpevlREIDRLKAQLN 1278
Cdd:COG4717 307 LQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE---------ELQELLREAEELEEE----LQLEELEQEIA 373
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1279 ELVNSHG-RSQEQLIRLQGERDEWRRERAKVET--------KTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAED 1349
Cdd:COG4717 374 ALLAEAGvEDEEELRAALEQAEEYQELKEELEEleeqleelLGELEELLEALDEEELEEELEELEEELEELEEELEELRE 453
|
410
....*....|....
gi 156104874 1350 AVYELQSKRLLLER 1363
Cdd:COG4717 454 ELAELEAELEQLEE 467
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
906-1131 |
1.55e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 906 SPAQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQrpLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKR 985
Cdd:COG4942 14 AAAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQ--LAALERRIAALARRIRALEQELAALEAELAELEKE 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 986 RAGLQADLEVAAQKVVQL------ESKRKTMQPHLLTKEVTQVERDPG-LDSQAAQLRIQIQQLRGEdaviSARLEGLKK 1058
Cdd:COG4942 92 IAELRAELEAQKEELAELlralyrLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAEELRAD----LAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 156104874 1059 ELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVE 1131
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAA 240
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1818-1855 |
2.78e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 40.16 E-value: 2.78e-04
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1818 LGLGDDSFPIAGIYDTTTDNKCSIKTAVAKNMLDPITG 1855
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
881-1365 |
4.74e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 4.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 881 ARKMLEKKELSEDIRRTHDAKQGSespaQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRtqrplERLEEKEVV 960
Cdd:COG4717 54 EADELFKPQGRKPELNLKELKELE----EELKEAEEKEEEYAELQEELEELEEELEELEAELEELR-----EELEKLEKL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 961 EFYRDPQLEgsLSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVERDPGLDSQAAQLRIQIQ 1040
Cdd:COG4717 125 LQLLPLYQE--LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELE 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1041 QLRGEDAVISARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQAri 1120
Cdd:COG4717 203 ELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLF-- 280
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1121 edLERAISSVEPKVIVKEVKKVEQDPGLLQESSRLRSlLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQERVHEIF 1200
Cdd:COG4717 281 --LVLGLLALLFLLLAREKASLGKEAEELQALPALEE-LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE 357
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1201 QVDPE-TEQEITRLKAKLQEMAGKRSgvEKEVEKLLPDLEvlRAQKPTVEYKEVTQEVVRHERSPEVLREI---DRLKAQ 1276
Cdd:COG4717 358 ELEEElQLEELEQEIAALLAEAGVED--EEELRAALEQAE--EYQELKEELEELEEQLEELLGELEELLEAldeEELEEE 433
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1277 LNELvnshgrsQEQLIRLQGERDEWRRERAKVETKTvsKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQS 1356
Cdd:COG4717 434 LEEL-------EEELEELEEELEELREELAELEAEL--EQLEEDGELAELLQELEELKAELRELAEEWAALKLALELLEE 504
|
....*....
gi 156104874 1357 KRLLLERRK 1365
Cdd:COG4717 505 AREEYREER 513
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1384-1591 |
5.22e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 5.22e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1384 LREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEkiime 1463
Cdd:COG4913 615 LEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAA----- 689
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1464 evvklekdpdLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKDRVLEDERARVWEML 1543
Cdd:COG4913 690 ----------LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAAL 759
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 156104874 1544 NRERTARQAREEEarrlreriDRAETLGRTWSREESELQRARDQADQE 1591
Cdd:COG4913 760 GDAVERELRENLE--------ERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1932-1969 |
6.93e-04 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 39.00 E-value: 6.93e-04
10 20 30
....*....|....*....|....*....|....*...
gi 156104874 1932 LPHLQVQHLTGGLIDPKRTGRIPIQQALLSGMISEELA 1969
Cdd:smart00250 1 QRLLEAQSAIGGIIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1093-1306 |
7.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 7.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1093 QALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTKNATLARE 1172
Cdd:COG4942 30 EQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAEL 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1173 LSDL-----HSKYSVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKPT 1247
Cdd:COG4942 110 LRALyrlgrQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAA 189
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 156104874 1248 VEykevTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERA 1306
Cdd:COG4942 190 LE----ALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTP 244
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
786-1059 |
7.25e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 7.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 786 KLQAQKRLTQEIQSRERDRATASHLSQALQAALQDYELQADTYRCSLEPTLAVSAPKRPRVAPLQESIQAQEKNLAKAYT 865
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAK 1570
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 866 EVAAAQQQLLQQLEFARKM-------------LEKKELSEDIRRTHDAKQGSESPAQAGRE---SEALKAQLEEERKRVA 929
Cdd:PTZ00121 1571 KAEEDKNMALRKAEEAKKAeearieevmklyeEEKKMKAEEAKKAEEAKIKAEELKKAEEEkkkVEQLKKKEAEEKKKAE 1650
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 930 RVQHELEAQRSQLLQLRTQ-----------RPLERLEEKEVVEFYRDPQLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQ 998
Cdd:PTZ00121 1651 ELKKAEEENKIKAAEEAKKaeedkkkaeeaKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 156104874 999 KVVQLESKRKTMQphlltKEVTQVERDPGLDSQAAQLRIQIQQLRGE-----DAVISarlEGLKKE 1059
Cdd:PTZ00121 1731 KAEEAKKEAEEDK-----KKAEEAKKDEEEKKKIAHLKKEEEKKAEEirkekEAVIE---EELDEE 1788
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1103-1366 |
8.18e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 8.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1103 AARRKQAEEAVAKLQARIEDLERAISSVEpkvivkevkkveqdpgllQESSRLRSLLEEERTKNATLARELSDLHSKYSV 1182
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALK------------------KEEKALLKQLAALERRIAALARRIRALEQELAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1183 VEKQRPKVQLQERvheifqvdpETEQEITRLKAKLQEMAGK--RSGVEKEVEKLLPDLEVLRAQKPTVEYKEVTqevvrh 1260
Cdd:COG4942 81 LEAELAELEKEIA---------ELRAELEAQKEELAELLRAlyRLGRQPPLALLLSPEDFLDAVRRLQYLKYLA------ 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1261 ersPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEkdpvLEKEAERLRQEVREA 1340
Cdd:COG4942 146 ---PARREQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR----LEKELAELAAELAEL 218
|
250 260
....*....|....*....|....*.
gi 156104874 1341 AQKRRAAEDAVYELQSKRLLLERRKP 1366
Cdd:COG4942 219 QQEAEELEALIARLEAEAAAAAERTP 244
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1049-1690 |
8.45e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.58 E-value: 8.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1049 ISARLEGLKKELLALEKREVDVKEKVVVKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAIS 1128
Cdd:pfam02463 188 LIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKL 267
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1129 SvepKVIVKEVKKVEQDPGLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQrpKVQLQERVHEIFQVDPETEQ 1208
Cdd:pfam02463 268 A---QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE--KKKAEKELKKEKEEIEELEK 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1209 EITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKpTVEYKEVTQEVVRHErspEVLREIDRLKAQLNELvnsHGRSQ 1288
Cdd:pfam02463 343 ELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKK-KLESERLSSAAKLKE---EELELKSEEEKEAQLL---LELAR 415
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1289 EQLIRLQGERDEWRRERAK----VETKTVSKEVVRHEKDPVLEKEAERLRQEVREAaqKRRAAEDAVYELQSKRLLLERR 1364
Cdd:pfam02463 416 QLEDLLKEEKKEELEILEEeeesIELKQGKLTEEKEELEKQELKLLKDELELKKSE--DLLKETQLVKLQEQLELLLSRQ 493
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1365 KPEEKVVVQEVVVTQKDPKLREEHSRLSGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTL 1444
Cdd:pfam02463 494 KLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLVRALTEL 573
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1445 RIQELEKRPPTVQEKIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQEKTIYKeVI 1524
Cdd:pfam02463 574 PLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRK-GV 652
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1525 RVQKDRVLEDERARVWEMLNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALER 1604
Cdd:pfam02463 653 SLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQD 732
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1605 QKQQQTLQLQEESKLLSQKTESERQKAAQRGQELSRLEaaiLREKDQIYEKERTLRDLHAKVSREELSQETQTRETNLST 1684
Cdd:pfam02463 733 KINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELS---LKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEE 809
|
....*.
gi 156104874 1685 KISILE 1690
Cdd:pfam02463 810 LKEEAE 815
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1430-1657 |
8.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 8.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1430 SKKLAVERELRQLTLRIQELEKRpptvQEKIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVL 1509
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKE----LAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1510 QKAKSQEKTIYKEVIRVQKDRvledERARVWEMLNRERTARQAREEEARRLRERIDRAEtLGRTWSREESELQRARDQAD 1589
Cdd:COG4942 96 RAELEAQKEELAELLRALYRL----GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARRE-QAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 156104874 1590 QECGRLQQELRALERQKQQQTLQLQEESKL---LSQKTESERQKAAQRGQELSRLEAAILREKDQIYEKER 1657
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLlarLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1205-1657 |
1.60e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1205 ETEQEITRLKAKLQEMAGKRSGVEKEVEKLLPDLEVLRAQKptvEYKEVTQEVVRHERspevlrEIDRLKAQLNELVNSH 1284
Cdd:COG4717 85 EKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLL---QLLPLYQELEALEA------ELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1285 GRSQEQLIRLQGERDEWRRERAKVETKTVSKEVVRHEKDPVLEKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERR 1364
Cdd:COG4717 156 EELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1365 KPEEkvvvqevvvtQKDPKLREEHSRLSG--------SLDEEVGRRRQLELEVQQLRAGVeeqeGLLSFQEDRSKKLAVE 1436
Cdd:COG4717 236 LEAA----------ALEERLKEARLLLLIaaallallGLGGSLLSLILTIAGVLFLVLGL----LALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1437 RELRQLtlriqELEKRPPTVQEKIIMEEVVKLEKDPDLEKStEALRWDLDQEKTQVTELNRECKNLQVQIDVLQKAKSQ- 1515
Cdd:COG4717 302 KEAEEL-----QALPALEELEEEELEELLAALGLPPDLSPE-ELLELLDRIEELQELLREAEELEEELQLEELEQEIAAl 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1516 --------EKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRLRERIDRAETlgrtwSREESELQRARDQ 1587
Cdd:COG4717 376 laeagvedEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEEL-----EEELEELEEELEE 450
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 156104874 1588 ADQECGRLQQELRALERQKQQQTlqlqeesklLSQKTESERQKAAQRGQELSRLEAA--ILREKDQIYEKER 1657
Cdd:COG4717 451 LREELAELEAELEQLEEDGELAE---------LLQELEELKAELRELAEEWAALKLAleLLEEAREEYREER 513
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1494-1690 |
1.82e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.39 E-value: 1.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1494 ELNRECKNLQVQIDVLQKAKSQEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRLRERIDRAETLGRT 1573
Cdd:COG1196 217 ELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1574 WSREESELQRARDQADQECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRgQELSRLEAAILREKDQIY 1653
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE-AELAEAEEALLEAEAELA 375
|
170 180 190
....*....|....*....|....*....|....*...
gi 156104874 1654 EKERTLRDLHAKVSREELSQ-ETQTRETNLSTKISILE 1690
Cdd:COG1196 376 EAEEELEELAEELLEALRAAaELAAQLEELEEAEEALL 413
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1408-1718 |
2.35e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1408 EVQQLRAGVEEQEGLLSFQED-------RSKKLAVERELRQLTLRIQELEKRPPTVQEKIimeEVVKLEKDPDLE----- 1475
Cdd:pfam15921 188 EIRSILVDFEEASGKKIYEHDsmstmhfRSLGSAISKILRELDTEISYLKGRIFPVEDQL---EALKSESQNKIElllqq 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1476 --KSTEALRWDLDQEKTQVTE----LNRECKNLQVQIDVLQKAKSQEKTIYKevirvqkdRVLEDERARVWEMLNRERTA 1549
Cdd:pfam15921 265 hqDRIEQLISEHEVEITGLTEkassARSQANSIQSQLEIIQEQARNQNSMYM--------RQLSDLESTVSQLRSELREA 336
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1550 RQAREeearrlreriDRAETLGRTWSREESELQRAR---DQADQECG----RLQQELRALERQKQQQTLQLQEESKLLSQ 1622
Cdd:pfam15921 337 KRMYE----------DKIEELEKQLVLANSELTEARterDQFSQESGnlddQLQKLLADLHKREKELSLEKEQNKRLWDR 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1623 KTESE------RQKAAQRGQELSRLEAAILREKDQIY-EKERTLRDLHAK-VSREELSQETQTRETNLSTKISILEPETG 1694
Cdd:pfam15921 407 DTGNSitidhlRRELDDRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKnESLEKVSSLTAQLESTKEMLRKVVEELTA 486
|
330 340
....*....|....*....|....
gi 156104874 1695 KDMSpYEAYKRGIIDRGQYLQLQE 1718
Cdd:pfam15921 487 KKMT-LESSERTVSDLTASLQEKE 509
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
882-1058 |
2.38e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.98 E-value: 2.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 882 RKMLEKKELSEDIRRTHDAKQGSESPAQAGRESEALKAQLEEERKRVARVQHELEAQRSQLLQLRTQR---PLERLEeke 958
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIrgnGGDRLE--- 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 959 vvefyrdpQLEGSLSRVKAQVEEEGKRRAGLQADLEVAAQKVVQLESKRKTMQPHLLTKEVTQVERDPGLDSQAAQLRIQ 1038
Cdd:COG4913 342 --------QLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAA 413
|
170 180
....*....|....*....|
gi 156104874 1039 IQQLRGEDAVISARLEGLKK 1058
Cdd:COG4913 414 LRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1385-1707 |
2.40e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 43.13 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1385 REEHSRLSGSLDEEVGRRRQLElEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRqltLRIQELEKRPPTVQEKIIMEE 1464
Cdd:TIGR02169 156 RKIIDEIAGVAEFDRKKEKALE-ELEEVEENIERLDLIIDEKRQQLERLRREREKA---ERYQALLKEKREYEGYELLKE 231
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1465 VVKLEKD-PDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDvlQKAKSQEKTIYKEVIRVQKD-RVLEDERARVWEM 1542
Cdd:TIGR02169 232 KEALERQkEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLE--ELNKKIKDLGEEEQLRVKEKiGELEAEIASLERS 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1543 LNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQADQECGRLQQELRALERqkqqQTLQLQEESKLLSQ 1622
Cdd:TIGR02169 310 IAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA----ELEEVDKEFAETRD 385
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1623 KTESERQKAAQRGQELSRLEAAILREKDQIYEKERTLRDLHAKVSR-EELSQETQTRETNLSTKISILEPE---TGKDMS 1698
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGiEAKINELEEEKEDKALEIKKQEWKleqLAADLS 465
|
....*....
gi 156104874 1699 PYEAYKRGI 1707
Cdd:TIGR02169 466 KYEQELYDL 474
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1149-1511 |
3.15e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1149 LQESSRLRSLLEEERTKNATLARELSDLHSKYSVVEKQRPKVQLQERVHEIFQVDPETEQEITRLKAKLQEMAGKRSGVE 1228
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1229 KEVEKLLPDLEVLRAQKPTVEYKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGERDEWRRERAKV 1308
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQL 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1309 ETKTVSKEVVRHEKDP-------------------------------------------VLEKEAERLRQEVREAaqKRR 1345
Cdd:COG4717 233 ENELEAAALEERLKEArlllliaaallallglggsllsliltiagvlflvlgllallflLLAREKASLGKEAEEL--QAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1346 AAEDAVYELQSKRLLLERRKPEEKVVVQEVVVTQKDPKLREEHSRLSgSLDEEVgRRRQLELEVQQL--RAGVEEQEGLL 1423
Cdd:COG4717 311 PALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAE-ELEEEL-QLEELEQEIAALlaEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1424 SFQEDRSKKLAVERELRQLTLRIQELEKRpptvqekiiMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQ 1503
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGE---------LEELLEALDEEELEEELEELEEELEELEEELEELREELAELE 459
|
....*...
gi 156104874 1504 VQIDVLQK 1511
Cdd:COG4717 460 AELEQLEE 467
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1270-1683 |
3.34e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1270 IDRLKAQLNELVNSHGRsqeQLIRLQGERDEWRRERAKVETKtvskevvrhekdpvlEKEAERLRQEVREAAQKRRAAED 1349
Cdd:COG4717 48 LERLEKEADELFKPQGR---KPELNLKELKELEEELKEAEEK---------------EEEYAELQEELEELEEELEELEA 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1350 AVYELQSKRLLLERRKPEEKVVVQEVVVTQKdpkLREEHSRLsGSLDEEVGRRRQLELEVQQLRAGVEEQEGLLSfQEDR 1429
Cdd:COG4717 110 ELEELREELEKLEKLLQLLPLYQELEALEAE---LAELPERL-EELEERLEELRELEEELEELEAELAELQEELE-ELLE 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1430 SKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKDPDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQIDVL 1509
Cdd:COG4717 185 QLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1510 QKAKSQEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARDQAD 1589
Cdd:COG4717 265 GGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLD 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1590 --QECGRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQ--KAAQRGQELSRLEAAILREKDQIYEKERTLRDLHAK 1665
Cdd:COG4717 345 riEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEElrAALEQAEEYQELKEELEELEEQLEELLGELEELLEA 424
|
410
....*....|....*...
gi 156104874 1666 VSREELSQETQTRETNLS 1683
Cdd:COG4717 425 LDEEELEEELEELEEELE 442
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
917-1686 |
4.78e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.08 E-value: 4.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 917 LKAQLEEERKRVARVQHELEAQRSQLLQLRTQR--PLERLEEKE--VVEFYRDPQLE-GSLSRVKAQVEEEGKRRAGLQA 991
Cdd:pfam01576 227 LQAQIAELRAQLAKKEEELQAALARLEEETAQKnnALKKIRELEaqISELQEDLESErAARNKAEKQRRDLGEELEALKT 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 992 DLE-----VAAQKvvQLESKRKTmqphlltkEVTQVERdpGLDSQAAQLRIQIQQLRGEDAV----ISARLEGLKKELLA 1062
Cdd:pfam01576 307 ELEdtldtTAAQQ--ELRSKREQ--------EVTELKK--ALEEETRSHEAQLQEMRQKHTQaleeLTEQLEQAKRNKAN 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1063 LEKrevdvkekvvvKEVVKVEKNLEMVKAAQALRLQMEEDAARRKQAEEAVAKLQARIEDLERAISSVEPKVIVkevkkv 1142
Cdd:pfam01576 375 LEK-----------AKQALESENAELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSK------ 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1143 eqdpgLLQESSRLRSLLEEERTKNATLARELSDLHSKYSVV-----EKQRPKVQLQERVHEIfqvdpetEQEITRLKAKL 1217
Cdd:pfam01576 438 -----LQSELESVSSLLNEAEGKNIKLSKDVSSLESQLQDTqellqEETRQKLNLSTRLRQL-------EDERNSLQEQL 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1218 QEMAGKRSGVEKEVEKLLPDLEVLRAQkptVEYKEVTQEVVRHERSpEVLREIDRLKAQLNELVNSHGRSQEQLIRLQGE 1297
Cdd:pfam01576 506 EEEEEAKRNVERQLSTLQAQLSDMKKK---LEEDAGTLEALEEGKK-RLQRELEALTQQLEEKAAAYDKLEKTKNRLQQE 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1298 RDEWRRERAKVETKTVSKEVVRHEKDPVLEKEaerlRQEVREAAQKRRAAEDAVYELQSKRLLLERRKPEEKVVVQEVVV 1377
Cdd:pfam01576 582 LDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEE----KAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELER 657
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1378 TQKdpKLREEHSRLSGSLDEeVGR--------RRQLELEVQQLRAGVEEQEGLLSFQEDRSKKLAV---------EREL- 1439
Cdd:pfam01576 658 TNK--QLRAEMEDLVSSKDD-VGKnvhelersKRALEQQVEEMKTQLEELEDELQATEDAKLRLEVnmqalkaqfERDLq 734
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1440 ----------RQLTLRIQELEKR--PPTVQEKIIMEEVVKLEKD-PDLEKSTEALRWDLDQEKTQVTELNRECKNLQVQI 1506
Cdd:pfam01576 735 ardeqgeekrRQLVKQVRELEAEleDERKQRAQAVAAKKKLELDlKELEAQIDAANKGREEAVKQLKKLQAQMKDLQREL 814
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1507 DVLQKAKSQEKTIYKEVIRvqKDRVLEDERARVWEMLNRERTARQAREEEARRLRERIDRAETLGRTWSREESELQRARD 1586
Cdd:pfam01576 815 EEARASRDEILAQSKESEK--KLKNLEAELLQLQEDLAASERARRQAQQERDELADEIASGASGKSALQDEKRRLEARIA 892
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1587 QADQECGRLQQELRAL-ERQKQQQTLQLQEESKL-----LSQKTESERQKAAQRGQELSrleAAILREKDQIYEKER-TL 1659
Cdd:pfam01576 893 QLEEELEEEQSNTELLnDRLRKSTLQVEQLTTELaaersTSQKSESARQQLERQNKELK---AKLQEMEGTVKSKFKsSI 969
|
810 820
....*....|....*....|....*..
gi 156104874 1660 RDLHAKVSREELSQETQTRETNLSTKI 1686
Cdd:pfam01576 970 AALEAKIAQLEEQLEQESRERQAANKL 996
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1327-1728 |
5.22e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 41.88 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1327 EKEAERLRQEVREAAQKRRAAEDAVYELQSKRLLLERRKpeekvVVQEVVVTQKDPKLREEHSRLsgsLDEEVGRRRQLE 1406
Cdd:pfam02463 169 RKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAK-----KALEYYQLKEKLELEEEYLLY---LDYLKLNEERID 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1407 LEVQQLRAGVEEQEGLLSFQEDRSKKLAVERELRQLTLRIQELEKRPPTVQEKIIMEEVVKLEKdpdLEKSTEALRWDLD 1486
Cdd:pfam02463 241 LLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLK---LERRKVDDEEKLK 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1487 QEKTQVTELNRECKNLQVQIDVLQKAKS--QEKTIYKEVIRVQKDRVLEDERARVWEMLNRERTARQAREEEARRLRERI 1564
Cdd:pfam02463 318 ESEKEKKKAEKELKKEKEEIEELEKELKelEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEEL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1565 DRAETLGRTWSREESELQRARDQADqecgRLQQELRALERQKQQQTLQLQEESKLLSQKTESERQKAAQRGQELSRLEAA 1644
Cdd:pfam02463 398 ELKSEEEKEAQLLLELARQLEDLLK----EEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDL 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1645 ILREKDQIYEKERTLRDLHAKVsREELSQETQTRETNLSTKISILEPETGKDMSPYEAYKRGIIDRGQYLQLQELECDWE 1724
Cdd:pfam02463 474 LKETQLVKLQEQLELLLSRQKL-EERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVE 552
|
....
gi 156104874 1725 EVTT 1728
Cdd:pfam02463 553 VSAT 556
|
|
| PLEC |
smart00250 |
Plectin repeat; |
1688-1713 |
5.42e-03 |
|
Plectin repeat;
Pssm-ID: 197605 Cd Length: 38 Bit Score: 36.31 E-value: 5.42e-03
10 20
....*....|....*....|....*.
gi 156104874 1688 ILEPETGKDMSPYEAYKRGIIDRGQY 1713
Cdd:smart00250 13 IIDPETGQKLSVEEALRRGLIDPETG 38
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1158-1697 |
6.47e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 6.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1158 LLEEERTKNATLARELSDLHSKYsvVEKQRPKVQLQERVHEI-----FQVDPETEQeitrLKAKLQEMAGKRSGVEKEVE 1232
Cdd:pfam12128 245 KLQQEFNTLESAELRLSHLHFGY--KSDETLIASRQEERQETsaelnQLLRTLDDQ----WKEKRDELNGELSAADAAVA 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1233 KLLPDLEVLRAQKPTVEYKEVTQEVVRHERSPEVLREIDRLKAQLNELVNSHGRSQEqlirlqgerdEWRRERAKVETKT 1312
Cdd:pfam12128 319 KDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEERLKALTGKHQDVTA----------KYNRRRSKIKEQN 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1313 VSKEVVRHEKdpvlekeaerlRQEVREAAQKRRAAEDAVYELQSKRLllerrkpeekvvvqEVVVTQKDPKLREEHSRLS 1392
Cdd:pfam12128 389 NRDIAGIKDK-----------LAKIREARDRQLAVAEDDLQALESEL--------------REQLEAGKLEFNEEEYRLK 443
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1393 GSLDEEVGRRRQL---ELEVQQLRAGVEEQEGLLSFQEDRSKK-LAVERELRQL-TLRIQELEKR---PPTVQEKIIMEE 1464
Cdd:pfam12128 444 SRLGELKLRLNQAtatPELLLQLENFDERIERAREEQEAANAEvERLQSELRQArKRRDQASEALrqaSRRLEERQSALD 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1465 VVKLEKDPDLEK-----STEALRWDLDQEKTQVTELNRECknlQVQIDVLQKAKSQEKTIYKEVIRVQKDRV-------- 1531
Cdd:pfam12128 524 ELELQLFPQAGTllhflRKEAPDWEQSIGKVISPELLHRT---DLDPEVWDGSVGGELNLYGVKLDLKRIDVpewaasee 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1532 -LEDERARVWEMLNRERTARQAREEEARRLRERIDRAetlgrtwSREESELQRARDQADQECGRLQQELRALERQKQQQT 1610
Cdd:pfam12128 601 eLRERLDKAEEALQSAREKQAAAEEQLVQANGELEKA-------SREETFARTALKNARLDLRRLFDEKQSEKDKKNKAL 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 156104874 1611 LQLQEeskllsQKTESERQKAAQRGQELSRLEAAILREKDQIYEkERTLRDLHAKVSREE-------LSQETQTRETNLS 1683
Cdd:pfam12128 674 AERKD------SANERLNSLEAQLKQLDKKHQAWLEEQKEQKRE-ARTEKQAYWQVVEGAldaqlalLKAAIAARRSGAK 746
|
570
....*....|....
gi 156104874 1684 TKISILEPETGKDM 1697
Cdd:pfam12128 747 AELKALETWYKRDL 760
|
|
| |
