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Conserved domains on  [gi|167235023|ref|NP_004424|]
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ETS-related transcription factor Elf-3 [Homo sapiens]

Protein Classification

SAM_PNT-ESE-1-like and ETS domain-containing protein( domain architecture ID 10170775)

SAM_PNT-ESE-1-like and ETS domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SAM_PNT-ESE-1-like cd08537
Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM ...
 53-132 5.33e-45

Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.


:

Pssm-ID: 188880  Cd Length: 81  Bit Score: 149.61  E-value: 5.33e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  53 GTEKASWLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LGDQLHAQLRDLTSS 131
Cdd:cd08537    1 GTTKGSWDQENPQFWSKQNVLEWISYHVEKNKYDASSLDLSYCTMDGLTLCACAKEQLMLVFGPeLGDLLHHSLEELTSR 80


                 .
gi 167235023 132 S 132
Cdd:cd08537   81 Y 81
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 272-359 7.64e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


:

Pssm-ID: 197710  Cd Length: 87  Bit Score: 146.64  E-value: 7.64e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023   272 GTHLWEFIRDILIHPElNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV 351
Cdd:smart00413   1 GIQLWQFLLDLLLDPE-NSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ....*...
gi 167235023   352 YKFGKNSS 359
Cdd:smart00413  80 YKFVKNPL 87
 
Name Accession Description Interval E-value
SAM_PNT-ESE-1-like cd08537
Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM ...
 53-132 5.33e-45

Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.


Pssm-ID: 188880  Cd Length: 81  Bit Score: 149.61  E-value: 5.33e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  53 GTEKASWLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LGDQLHAQLRDLTSS 131
Cdd:cd08537    1 GTTKGSWDQENPQFWSKQNVLEWISYHVEKNKYDASSLDLSYCTMDGLTLCACAKEQLMLVFGPeLGDLLHHSLEELTSR 80


                 .
gi 167235023 132 S 132
Cdd:cd08537   81 Y 81
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 272-359 7.64e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 146.64  E-value: 7.64e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023   272 GTHLWEFIRDILIHPElNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV 351
Cdd:smart00413   1 GIQLWQFLLDLLLDPE-NSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ....*...
gi 167235023   352 YKFGKNSS 359
Cdd:smart00413  80 YKFVKNPL 87
Ets pfam00178
Ets-domain;
274-354 1.39e-37

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 129.92  E-value: 1.39e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  274 HLWEFIRDILIHPElNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 353
Cdd:pfam00178   1 QLWQFLLDLLTDPE-YSDIIKWTDKEEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYR 79


                  .
gi 167235023  354 F 354
Cdd:pfam00178  80 F 80
SAM_PNT pfam02198
Sterile alpha motif (SAM)/Pointed domain;
48-132 2.92e-28

Sterile alpha motif (SAM)/Pointed domain;


Pssm-ID: 460486  Cd Length: 83  Bit Score: 105.45  E-value: 2.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023   48 QMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRD 127
Cdd:pfam02198   1 LPSFEKEQLRLWIPADPRLWTKDHVLEWLEWAV--DEFDLSKIDFSQFDMNGKALCSLGKEEFLQRAPGPGDILWSHLQI 78


                  ....*
gi 167235023  128 LTSSS 132
Cdd:pfam02198  79 LRKAS 83
SAM_PNT smart00251
SAM / Pointed domain; A subfamily of the SAM domain
 48-131 6.12e-26

SAM / Pointed domain; A subfamily of the SAM domain


Pssm-ID: 128547  Cd Length: 82  Bit Score: 99.26  E-value: 6.12e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023    48 QMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRD 127
Cdd:smart00251   1 PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAV--KEFSLSPIDFSKFDMSGKELCSMSKEEFLERAPFGGDILWSHLQI 78


                   ....
gi 167235023   128 LTSS 131
Cdd:smart00251  79 LRKA 82
 
Name Accession Description Interval E-value
SAM_PNT-ESE-1-like cd08537
Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM ...
 53-132 5.33e-45

Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators; SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.


Pssm-ID: 188880  Cd Length: 81  Bit Score: 149.61  E-value: 5.33e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  53 GTEKASWLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGP-LGDQLHAQLRDLTSS 131
Cdd:cd08537    1 GTTKGSWDQENPQFWSKQNVLEWISYHVEKNKYDASSLDLSYCTMDGLTLCACAKEQLMLVFGPeLGDLLHHSLEELTSR 80


                 .
gi 167235023 132 S 132
Cdd:cd08537   81 Y 81
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
 272-359 7.64e-44

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 146.64  E-value: 7.64e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023   272 GTHLWEFIRDILIHPElNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLV 351
Cdd:smart00413   1 GIQLWQFLLDLLLDPE-NSDIIKWTDRDEGEFKLVDPEEVARLWGQRKNKPNMNYEKLSRALRYYYKKNILEKVPGKRLV 79


                   ....*...
gi 167235023   352 YKFGKNSS 359
Cdd:smart00413  80 YKFVKNPL 87
Ets pfam00178
Ets-domain;
274-354 1.39e-37

Ets-domain;


Pssm-ID: 459700  Cd Length: 80  Bit Score: 129.92  E-value: 1.39e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  274 HLWEFIRDILIHPElNEGLMKWENRHEGVFKFLRSEAVAQLWGQKKKNSNMTYEKLSRAMRYYYKREILERVDGRRLVYK 353
Cdd:pfam00178   1 QLWQFLLDLLTDPE-YSDIIKWTDKEEGEFRLVDPEAVARLWGKRKGNPKMTYEKLSRALRYYYKKGILEKVPGKRLTYR 79


                  .
gi 167235023  354 F 354
Cdd:pfam00178  80 F 80
SAM_PNT pfam02198
Sterile alpha motif (SAM)/Pointed domain;
48-132 2.92e-28

Sterile alpha motif (SAM)/Pointed domain;


Pssm-ID: 460486  Cd Length: 83  Bit Score: 105.45  E-value: 2.92e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023   48 QMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRD 127
Cdd:pfam02198   1 LPSFEKEQLRLWIPADPRLWTKDHVLEWLEWAV--DEFDLSKIDFSQFDMNGKALCSLGKEEFLQRAPGPGDILWSHLQI 78


                  ....*
gi 167235023  128 LTSSS 132
Cdd:pfam02198  79 LRKAS 83
SAM_PNT_ESE cd08757
Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators; SAM ...
 63-130 1.85e-26

Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators; SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.


Pssm-ID: 188885  Cd Length: 69  Bit Score: 100.49  E-value: 1.85e-26
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167235023  63 QPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCD-MDGATLCNCALEELRLVFGPLGDQLHAQLRDLTS 130
Cdd:cd08757    1 HPQHWTKNDVLDWLLFVAEQNKIDAEEINFQKFDnIDGQTLCSMSLEEFIERDGVYGNLLYAELRRLLS 69
SAM_PNT smart00251
SAM / Pointed domain; A subfamily of the SAM domain
 48-131 6.12e-26

SAM / Pointed domain; A subfamily of the SAM domain


Pssm-ID: 128547  Cd Length: 82  Bit Score: 99.26  E-value: 6.12e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023    48 QMSLEGTEKASWLGEQPQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRD 127
Cdd:smart00251   1 PPNFEKEQKRLGIPADPQLWTEDHVLEWLEWAV--KEFSLSPIDFSKFDMSGKELCSMSKEEFLERAPFGGDILWSHLQI 78


                   ....
gi 167235023   128 LTSS 131
Cdd:smart00251  79 LRKA 82
SAM_PNT cd08203
Sterile alpha motif (SAM)/Pointed domain; Sterile alpha motif (SAM)/Pointed domain is found in ...
 63-130 9.74e-18

Sterile alpha motif (SAM)/Pointed domain; Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have a C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be a SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcriptional regulators are proto-oncogenes. They are prone to chromosomal translocations resulting in gene fusions. Chimeric proteins with SAM Pointed domains were found in a number of different human tumors including myeloid leukemia, lymphoblastic leukemia, Ewing's sarcoma and primitive neuroectodermal tumor. Members of this family are potential targets for cancer therapy.


Pssm-ID: 188876  Cd Length: 67  Bit Score: 76.59  E-value: 9.74e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 167235023  63 QPQFWSKTQVLDWISYQVEKNKYDAsaIDFSRCDMDGATLCNCALEELRLVFGP-LGDQLHAQLRDLTS 130
Cdd:cd08203    1 DPLEWTPEHVQQWLSWVSKKFSLDP--IDPDRFPMNGKELCALSKEDFRERAPSrGGDVLASHLALLRK 67
SAM_PNT-ESE-3-like cd08539
Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators; SAM ...
 59-128 8.77e-12

Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators; SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.


Pssm-ID: 188882  Cd Length: 78  Bit Score: 60.43  E-value: 8.77e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDL 128
Cdd:cd08539    4 WHEIHPQYWTKFQVWEWLQHLLDTNQLDANCIPFQEFDINGEHLCSMSLQEFTRAAGTAGQLLYSNLQHL 73
SAM_PNT-ESE-2-like cd08538
Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators; SAM ...
 59-128 2.11e-07

Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators; SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.


Pssm-ID: 188881  Cd Length: 84  Bit Score: 48.09  E-value: 2.11e-07
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 167235023  59 WLGEQPQFWSKTQVLDWISYQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDL 128
Cdd:cd08538    8 WTSVHPEYWTKRHVWEWLQFCCDQYKLDANCISFCHFNISGLQLCSMTQEEFLDAAGICGEYLYFILQNI 77
SAM_PNT-PDEF-like cd08532
Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor; SAM Pointed domain of ...
 64-125 6.26e-05

Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor; SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.


Pssm-ID: 188878  Cd Length: 81  Bit Score: 41.19  E-value: 6.26e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 167235023  64 PQFWSKTQVLDWIsyQVEKNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQL 125
Cdd:cd08532   14 PYQWSTANVQAWL--QWTEHQYRLPPNPPRCFQMNGKTLCALSEEDFVRRAPQGGDTLHAQL 73
SAM_PNT-ETS-1 cd08542
Sterile alpha motif (SAM)/Pointed domain of ETS-1; SAM Pointed domain of ETS-1 subfamily of ...
 64-128 7.73e-05

Sterile alpha motif (SAM)/Pointed domain of ETS-1; SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play a role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.


Pssm-ID: 176092  Cd Length: 88  Bit Score: 41.12  E-value: 7.73e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 167235023  64 PQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALE---ELRLVFgpLGDQLHAQLRDL 128
Cdd:cd08542   19 PREWTETHVREWVMWAV--NEFSLKGVDFQKFCMSGAALCALGKEcflELAPDF--VGDILWEHLEIL 82
SAM_PNT-Tel_Yan cd08535
Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein; SAM Pointed domain of Tel ...
 63-128 6.46e-03

Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein; SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genes and is involved in MAPK signaling. They participate in regulation of different processes during embryoniv development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.


Pssm-ID: 176085  Cd Length: 68  Bit Score: 35.06  E-value: 6.46e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 167235023  63 QPQFWSKTQVLDWISYQVekNKYDASAIDFSRCDMDGATLCNCALEELRLVFGPLGDQLHAQLRDL 128
Cdd:cd08535    2 QPRQWSREDVLQWLRWAE--NEFSLPPIDSNTFEMNGKALCLLTKEDFRYRCPHAGDVLYNLLQHL 65
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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