|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-962 |
1.49e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 91.66 E-value: 1.49e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 265 LKRQLEEKEKLLATEQEDAAVAKskLRELNKEMAAEKAKAAAGEAkvkkQLVAREQEITAVQAR---MQASYREHVKEVQ 341
Cdd:TIGR02168 218 LKAELRELELALLVLRLEELREE--LEELQEELKEAEEELEELTA----ELQELEEKLEELRLEvseLEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 342 QLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 421
Cdd:TIGR02168 292 ALANEISRLEQQKQIL-RERLANLERQLEELEAQLEELESKLD-ELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 422 LEAKAAAFEKQVLQLQ---ASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQqqmaelhsklqsSEAEVRS 498
Cdd:TIGR02168 370 LESRLEELEEQLETLRskvAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL------------EEAELKE 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 499 KCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQardaQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVE 578
Cdd:TIGR02168 438 LQAELEELEEELEELQEELERLEEALEELREELEEAE----QALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLK 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 579 QQKVKNNDL---------REKNWKAMEA---------LATAEQACKEKLLSLTQAK-------EESEKQLCLIEAQTMEA 633
Cdd:TIGR02168 514 NQSGLSGILgvlselisvDEGYEAAIEAalggrlqavVVENLNAAKKAIAFLKQNElgrvtflPLDSIKGTEIQGNDREI 593
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 634 LLALLPELSVLAQ----------------------QNYTEWLQDLKEKGP-----TL---LKHP-----PAPAEPSS--- 675
Cdd:TIGR02168 594 LKNIEGFLGVAKDlvkfdpklrkalsyllggvlvvDDLDNALELAKKLRPgyrivTLdgdLVRPggvitGGSAKTNSsil 673
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 676 -------DLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQvwraKVGAAEEELQKSRVTVKHLEEIV 748
Cdd:TIGR02168 674 errreieELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSR----QISALRKDLARLEAEVEQLEERI 749
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 749 EKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEM 828
Cdd:TIGR02168 750 AQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESL 829
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 829 KSHVEDgdiagapasspeappaeqdpvqLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKL-----RTAG 903
Cdd:TIGR02168 830 ERRIAA----------------------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlneraSLEE 887
|
730 740 750 760 770
....*....|....*....|....*....|....*....|....*....|....*....
gi 1844083911 904 PLESSETEEASQLKERLEKEKKLtSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQL 962
Cdd:TIGR02168 888 ALALLRSELEELSEELRELESKR-SELRRELEELREKLAQLELRLEGLEVRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
320-902 |
1.82e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 87.68 E-value: 1.82e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 320 QEITAVQARMQASYREHVK-EVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQEL 398
Cdd:COG1196 220 EELKELEAELLLLKLRELEaELEELEAELEELEAELEEL-EAELAELEAELEELRLELEELELELEEAQ-AEEYELLAEL 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 399 SKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQA---SHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKA 475
Cdd:COG1196 298 ARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEeleELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 476 QEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTR 555
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 556 LKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQT-MEAL 634
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVeAAYE 537
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 635 LALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSI--LAETEGMLRDL 712
Cdd:COG1196 538 AALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVasDLREADARYYV 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 713 QKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAG 792
Cdd:COG1196 618 LGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEE 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 793 LRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQlewtEAILEDEQ 872
Cdd:COG1196 698 ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEEL----ERELERLE 773
|
570 580 590
....*....|....*....|....*....|....*..
gi 1844083911 873 TQRQKLTA-------EFEEAQTSACRLQEELEKLRTA 902
Cdd:COG1196 774 REIEALGPvnllaieEYEELEERYDFLSEQREDLEEA 810
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
331-967 |
2.79e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 84.34 E-value: 2.79e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 331 ASYREHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQnAELAKLRQELSKVSKELVEKSE 410
Cdd:TIGR02168 232 LRLEELREELEELQEELKEAEEELEEL-TAELQELEEKLEELRLEVSELEEEIEELQ-KELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 411 AVRQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKLQ 490
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESKLDELA----EELAELEEKLEELKEELESLEAELEELEAELEE----------LESRLE 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 491 SSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEAlleagqARDAQDVQASQAEADQQQTRLKELESQVSGLEKEA 570
Cdd:TIGR02168 376 ELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLED------RRERLQQEIEELLKKLEEAELKELQAELEELEEEL 449
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 571 IELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEK--LLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ- 647
Cdd:TIGR02168 450 EELQEELERLEEALEELREELEEAEQALDAAERELAQLqaRLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELi 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 648 ------------------------NYTEWLQD---LKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRS 700
Cdd:TIGR02168 530 svdegyeaaieaalggrlqavvveNLNAAKKAiafLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVK 609
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 701 ILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVK-HLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAA 779
Cdd:TIGR02168 610 FDPKLRKALSYLLGGVLVVDDLDNALELAKKLRPGYRIVTLDgDLVRPGGVITGGSAKTNSSILERRREIEELEEKIEEL 689
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 780 SAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKT 859
Cdd:TIGR02168 690 EEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEER 769
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 860 QLEWTEAILEDEQtQRQKLTAEFEEAQTSACRLQEELEKLRTAgplESSETEEASQLKERLEKEKKLTSDLGRAATRLQE 939
Cdd:TIGR02168 770 LEEAEEELAEAEA-EIEELEAQIEQLKEELKALREALDELRAE---LTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
650 660
....*....|....*....|....*...
gi 1844083911 940 LLKTTQEQLAREKDTVKKLQEQLEKAED 967
Cdd:TIGR02168 846 QIEELSEDIESLAAEIEELEELIEELES 873
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
33-168 |
1.45e-15 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 74.39 E-value: 1.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 33 MKETSYEEALANQRKEMAKTHhQKVEKKKKEKTVEKKGKTKKKEEKPNGKIPDHDPAPNVTVLLRE---PVRAPAVAVAP 109
Cdd:pfam05104 1 MKETSYEEALAKQRRELKKTP-TEKEKKKKEKKKEKKKKSKKKEEKPNGKLPESEQADESEEEPREfktPDEAPSAALEP 79
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 1844083911 110 TPVqPPIIVAPVATVPAMPQEKLASSPKDKKKKEKKVAKVEPAVSSVVNSIQVLTSKAA 168
Cdd:pfam05104 80 EPV-PTPVPAPVEPEPAPPSESPAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEE 137
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
388-950 |
7.02e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.13 E-value: 7.02e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 388 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAshreSEEALQKRLDEVSRELCHTQSSHAS 467
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQA----EEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 468 LRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQA 547
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALR 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 548 EADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREknwkAMEALATAEQACKEKLLSLTQAKEESEKQLCLIE 627
Cdd:COG1196 394 AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE----EEEEEEEALEEAAEEEAELEEEEEALLELLAELL 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 628 AQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAEcdqyrSILAETEG 707
Cdd:COG1196 470 EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY-----EAALEAAL 544
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 708 MLRDLQKSVEEEEQVWRAKVGAAEEELqkSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYA 787
Cdd:COG1196 545 AAALQNIVVEDDEVAAAAIEYLKAAKA--GRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 788 KEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGdiagapasspeappAEQDPVQLKTQLEWTEAI 867
Cdd:COG1196 623 LGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRREL--------------LAALLEAEAELEELAERL 688
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 868 LEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQ 947
Cdd:COG1196 689 AEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERE 768
|
...
gi 1844083911 948 LAR 950
Cdd:COG1196 769 LER 771
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
366-972 |
1.52e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 75.56 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 366 QQENSILRDALNQATSQVESKQNAELAKL----RQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqASHR 441
Cdd:PTZ00121 1083 AKEDNRADEATEEAFGKAEEAKKTETGKAeearKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRV----EIAR 1158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 442 ESEEAlqkRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSglhgqlqeaRAENSQLT 521
Cdd:PTZ00121 1159 KAEDA---RKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEAR---------KAEDAKKA 1226
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 522 ERIRSIE-ALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKE----AIELREAVEQQKVKNNDLREKNWKAME 596
Cdd:PTZ00121 1227 EAVKKAEeAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEearkADELKKAEEKKKADEAKKAEEKKKADE 1306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 597 ALATAEQACKEKLLSlTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSD 676
Cdd:PTZ00121 1307 AKKKAEEAKKADEAK-KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 677 LASKLREAEETQStlQAECDQYRSilaetegmlRDLQKSVEEEEQVWRAKVGAaeEELQKSRVTVKHLEEI--VEKLKGE 754
Cdd:PTZ00121 1386 KAEEKKKADEAKK--KAEEDKKKA---------DELKKAAAAKKKADEAKKKA--EEKKKADEAKKKAEEAkkADEAKKK 1452
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 755 LESSDQVREHTSHLEAELEKHMAAASAECQNYAKEvagLRQLLLESQSQLDAAK--SEAQKQSDELalvrqQLSEMKSHV 832
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADE---AKKKAEEAKKKADEAKkaAEAKKKADEA-----KKAEEAKKA 1524
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 833 EDGDIAGAPASSPEAPPAEQdpVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 912
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEE--KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYE 1602
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 913 ASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSK 972
Cdd:PTZ00121 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK 1662
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
319-967 |
6.93e-13 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 73.25 E-value: 6.93e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 319 EQEITAVQARMQASYREHVKEVQQLQgKIRTLQE--QLENGPNTQLARLQQENSILRDALN-QATSQVESKQNAELAKLR 395
Cdd:PTZ00121 1112 EEARKAEEAKKKAEDARKAEEARKAE-DARKAEEarKAEDAKRVEIARKAEDARKAEEARKaEDAKKAEAARKAEEVRKA 1190
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 396 QELSKVSK----ELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRE-----LCHTQSSHA 466
Cdd:PTZ00121 1191 EELRKAEDarkaEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfeearMAHFARRQA 1270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 467 SLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDvQASQ 546
Cdd:PTZ00121 1271 AIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA-EAAK 1349
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 547 AEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLReknwKAMEALATAEQAcKEKLLSLTQAKEESEKQlclI 626
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK----KADEAKKKAEED-KKKADELKKAAAAKKKA---D 1421
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 627 EAQTMEALLALLPELSVLAQQNYTEwlQDLKEKGPTLLKhppapAEPSSDLASKLREAEETQSTLQA--ECDQYRSILAE 704
Cdd:PTZ00121 1422 EAKKKAEEKKKADEAKKKAEEAKKA--DEAKKKAEEAKK-----AEEAKKKAEEAKKADEAKKKAEEakKADEAKKKAEE 1494
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 705 TEGMLRDLQKSVEEE---EQVWRAKVGAAEEELQKSRVTVK--HLEEIVEKLKG-------ELESSDQVREHTSHLEAEL 772
Cdd:PTZ00121 1495 AKKKADEAKKAAEAKkkaDEAKKAEEAKKADEAKKAEEAKKadEAKKAEEKKKAdelkkaeELKKAEEKKKAEEAKKAEE 1574
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 773 EKHMAAASAECQNYAKEVAGLRQLLLESQSQldAAKSEAQKQSDELALVRQQLSEmKSHVEDGDIAGAPASSPEAPPAEq 852
Cdd:PTZ00121 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEK--KMKAEEAKKAEEAKIKAEELKK-AEEEKKKVEQLKKKEAEEKKKAE- 1650
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 853 dpvQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQtsacRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGR 932
Cdd:PTZ00121 1651 ---ELKKAEEENKIKAAEEAKKAEEDKKKAEEAK----KAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
|
650 660 670
....*....|....*....|....*....|....*
gi 1844083911 933 AatrlQELLKTTQEQLAREKDTVKKLQEQLEKAED 967
Cdd:PTZ00121 1724 A----EEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
334-902 |
3.23e-11 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 67.63 E-value: 3.23e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 334 REHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVR 413
Cdd:COG4913 231 VEHFDDLERAHEALEDAREQIE-----LLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 414 QDEQQRKALEAKAAAFEKQVLQLQASHRES----EEALQKRLDEVSRELCHTQSSHASLRADAEKaqeqqqqmaeLHSKL 489
Cdd:COG4913 306 RLEAELERLEARLDALREELDELEAQIRGNggdrLEQLEREIERLERELEERERRRARLEALLAA----------LGLPL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 490 QSSEAEvrskceelsglhgqLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKE 569
Cdd:COG4913 376 PASAEE--------------FAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPAR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 570 AIELREAVEQQ-KVKNNDLR-----------EKNWkamealataeQACKEKLLSlTQAkeesekqLCLIeaqtmeallal 637
Cdd:COG4913 442 LLALRDALAEAlGLDEAELPfvgelievrpeEERW----------RGAIERVLG-GFA-------LTLL----------- 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 638 lpelsvLAQQNY---TEWLQDLKEKG-------PTLLKHPPAPAEPSSDLASKLrEAEET--QSTLQAEC-DQYRSILAE 704
Cdd:COG4913 493 ------VPPEHYaaaLRWVNRLHLRGrlvyervRTGLPDPERPRLDPDSLAGKL-DFKPHpfRAWLEAELgRRFDYVCVD 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 705 TEGMLRDLQKSVEEEEQV------------------W------RAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQ 760
Cdd:COG4913 566 SPEELRRHPRAITRAGQVkgngtrhekddrrrirsrYvlgfdnRAKLAALEAELAELEEELAEAEERLEALEAELDALQE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 761 VREHTSHLE--AELEKHMAAASAECQNYAKEVAGLRQ---LLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVED- 834
Cdd:COG4913 646 RREALQRLAeySWDEIDVASAEREIAELEAELERLDAssdDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQa 725
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 835 -GDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILED-EQTQRQKLTAEFEEAQTSACRLQEELEKLRTA 902
Cdd:COG4913 726 eEELDELQDRLEAAEDLARLELRALLEERFAAALGDAvERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-962 |
1.66e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.66e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 265 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAkvkkQLVAREQEITAVQARmqasYREHVKEVQQLQ 344
Cdd:TIGR02168 328 LESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELES----RLEELEEQLETLRSK----VAQLELQIASLN 399
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 345 GKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQvesKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 424
Cdd:TIGR02168 400 NEIERLEARLE-RLEDRRERLQQEIEELLKKLEEAELK---ELQAELEELEEELEELQEELERLEEALEELREELEEAEQ 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 425 KAAAFEKQVLQLQAsHRESEEALQKRLDEVSRELchtqsshaslrADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELS 504
Cdd:TIGR02168 476 ALDAAERELAQLQA-RLDSLERLQENLEGFSEGV-----------KALLKNQSGLSGILGVLSELISVDEGYEAAIEAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 505 GLHGQLQEARAENSQlterIRSIEALLEAGQAR---------DAQDVQASQAEADQQQTR----LKELESQVSGLEKE-- 569
Cdd:TIGR02168 544 GGRLQAVVVENLNAA----KKAIAFLKQNELGRvtflpldsiKGTEIQGNDREILKNIEGflgvAKDLVKFDPKLRKAls 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 570 --------AIELREAVEQQKVKNNDLR---------------------------------EKNWKAMEALATAEQACKEK 608
Cdd:TIGR02168 620 yllggvlvVDDLDNALELAKKLRPGYRivtldgdlvrpggvitggsaktnssilerrreiEELEEKIEELEEKIAELEKA 699
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 609 LLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLA-----QQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLRE 683
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLArleaeVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 684 AEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIV---EKLKGELESSDQ 760
Cdd:TIGR02168 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEeqiEELSEDIESLAA 859
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 761 VREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDgdiaga 840
Cdd:TIGR02168 860 EIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEG------ 933
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 841 passpeappAEQDPVQLKTQL-EWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLrtaGPLESSETEEASQLKER 919
Cdd:TIGR02168 934 ---------LEVRIDNLQERLsEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL---GPVNLAAIEEYEELKER 1001
|
730 740 750 760
....*....|....*....|....*....|....*....|....
gi 1844083911 920 LEKEKKLTSDLGRAATRLQELL-KTTQEQLAREKDTVKKLQEQL 962
Cdd:TIGR02168 1002 YDFLTAQKEDLTEAKETLEEAIeEIDREARERFKDTFDQVNENF 1045
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
333-620 |
1.98e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 1.98e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 333 YREHVKEVQQLQGKIRTLQEQLeNGPNTQLARLQQENSILRDALNQATSQVESKQNaELAKLRQELSKVSKELVEKSEAV 412
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKREL-SSLQSELRRIENRLDELSQELSDASRKIGEIEK-EIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 413 RQDEQQRKALEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRELchtqsSHASLRADAEKAQEQQQQMAELHSKLQSS 492
Cdd:TIGR02169 747 SSLEQEIENVKSELKELEARIEELE----EDLHKLEEALNDLEARL-----SHSRIPEIQAELSKLEEEVSRIEARLREI 817
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 493 EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARdaqdVQASQAEADQQQTRLKELESQVSGLEKEAIE 572
Cdd:TIGR02169 818 EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGK----KEELEEELEELEAALRDLESRLGDLKKERDE 893
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 1844083911 573 LREAVEQQKVKNNDL---REKNWKAMEALATAEQACKEKLLSLTQAKEESE 620
Cdd:TIGR02169 894 LEAQLRELERKIEELeaqIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
219-579 |
8.04e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 219 TLVSTVGSMVF--NEGEAQRL-----IEILSEKAGIIQDTWHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLR 291
Cdd:TIGR02168 653 DLVRPGGVITGgsAKTNSSILerrreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALR 732
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 292 ELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntqlaRLQQENSI 371
Cdd:TIGR02168 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE----EAEEELAEAEAEIEELEAQIE--------QLKEELKA 800
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 372 LRDALNQATSQVeSKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRL 451
Cdd:TIGR02168 801 LREALDELRAEL-TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALL 879
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 452 DEVSrelchtqSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALL 531
Cdd:TIGR02168 880 NERA-------SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLT 952
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 1844083911 532 EAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 579
Cdd:TIGR02168 953 LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKE 1000
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
331-604 |
4.73e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 60.47 E-value: 4.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 331 ASYREHVKEVQQLQGKIRTLQEQLEnGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSE 410
Cdd:TIGR02169 230 KEKEALERQKEAIERQLASLEEELE-KLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLER 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 411 AVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHS 487
Cdd:TIGR02169 309 SIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIeeeRKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 488 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLE 567
Cdd:TIGR02169 389 DYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYE 468
|
250 260 270
....*....|....*....|....*....|....*..
gi 1844083911 568 KEAIELREavEQQKVkNNDLREKNWKAMEALATAEQA 604
Cdd:TIGR02169 469 QELYDLKE--EYDRV-EKELSKLQRELAEAEAQARAS 502
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
360-962 |
5.42e-09 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 60.24 E-value: 5.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 360 TQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSkelveksEAVRQDEQQRKALEAKAAAFEKQVLQLQAS 439
Cdd:pfam12128 272 TLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAAD-------AAVAKDRSELEALEDQHGAFLDADIETAAA 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 440 HRESEEALQKRLDEVSRELCHTQSSHASLRAdaekaqeqqqqmaelhsKLQSSEAEVRSKC-EELSGLHGQLQEARAENS 518
Cdd:pfam12128 345 DQEQLPSWQSELENLEERLKALTGKHQDVTA-----------------KYNRRRSKIKEQNnRDIAGIKDKLAKIREARD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 519 QLTErirSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVkNNDLREKNWKAMEAL 598
Cdd:pfam12128 408 RQLA---VAEDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLEN-FDERIERAREEQEAA 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 599 ATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYT----------EWLQDL-KEKGPTLLK-- 665
Cdd:pfam12128 484 NAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGTllhflrkeapDWEQSIgKVISPELLHrt 563
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 666 --HPPAPAEPSSDLAS----KLR-EAEETQSTLQAEcDQYRSILAETEGML---RDLQKSVEEEEQVWRAKVGAAEEELQ 735
Cdd:pfam12128 564 dlDPEVWDGSVGGELNlygvKLDlKRIDVPEWAASE-EELRERLDKAEEALqsaREKQAAAEEQLVQANGELEKASREET 642
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 736 KSRVTVKHLEEIVEKLKGELESsDQVRehtshLEAELEKHMAAASAECQNYAKEvagLRQLLLESQSQLDAAKSEAQKQS 815
Cdd:pfam12128 643 FARTALKNARLDLRRLFDEKQS-EKDK-----KNKALAERKDSANERLNSLEAQ---LKQLDKKHQAWLEEQKEQKREAR 713
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 816 DELALVRQQLSEMKShVEDGDIAGAPASSPEAPPAEQDpvQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRL-QE 894
Cdd:pfam12128 714 TEKQAYWQVVEGALD-AQLALLKAAIAARRSGAKAELK--ALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIaVR 790
|
570 580 590 600 610 620
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1844083911 895 ELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQL 962
Cdd:pfam12128 791 RQEVLRYFDWYQETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRAKLEMERKASEKQQVRL 858
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
373-763 |
1.23e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 1.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 373 RDALNQATSQVESKQNAE----LAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEK----------QVLQLQA 438
Cdd:PRK02224 186 RGSLDQLKAQIEEKEEKDlherLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEErreeletleaEIEDLRE 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 439 SHRESE---EALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARA 515
Cdd:PRK02224 266 TIAETErerEELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELR---DRLEECRVAAQAHNE 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 516 ENSQLTERIRSIEAllEAGQARDAQDVQASQAEADQQQtrLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAM 595
Cdd:PRK02224 343 EAESLREDADDLEE--RAEELREEAAELESELEEAREA--VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR 418
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 596 EALATAEQACKEKLLSLTQAKEESEKQLCLIEA---QTMEALLALLPELSVLAQ-----QNYTEWLQDLKEKGPTLLKHP 667
Cdd:PRK02224 419 EERDELREREAELEATLRTARERVEEAEALLEAgkcPECGQPVEGSPHVETIEEdrervEELEAELEDLEEEVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 668 PApAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEE---EEQVWRAKVGAAEEELQKSRVTVKHL 744
Cdd:PRK02224 499 ER-AEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAEleaEAEEKREAAAEAEEEAEEAREEVAEL 577
|
410
....*....|....*....
gi 1844083911 745 EEIVEKLKGELESSDQVRE 763
Cdd:PRK02224 578 NSKLAELKERIESLERIRT 596
|
|
| Rib_recp_KP_reg |
pfam05104 |
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards ... |
795-927 |
7.76e-08 |
|
Ribosome receptor lysine/proline rich region; This highly conserved region is found towards the C-terminus of the transmembrane domain. The function is unclear.
Pssm-ID: 461548 [Multi-domain] Cd Length: 140 Bit Score: 52.43 E-value: 7.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 795 QLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGapasSPEAPPAEQDPVQLKTQLEWTEAILEDEQT- 873
Cdd:pfam05104 8 EALAKQRRELKKTPTEKEKKKKEKKKEKKKKSKKKEEKPNGKLPE----SEQADESEEEPREFKTPDEAPSAALEPEPVp 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 1844083911 874 QRQKLTAEFEEAQTS---ACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKLT 927
Cdd:pfam05104 84 TPVPAPVEPEPAPPSespAPSPKEKKKKEKKSAKVEPAETPEAVQPKPALEKEEPPA 140
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
319-772 |
1.70e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.43 E-value: 1.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 319 EQEITAVQARMQA-----SYREHVKEVQQLQGKIRTLQEQLENGPNT------QLARLQQENSILRDALNQ--ATSQVES 385
Cdd:PRK02224 227 EQREQARETRDEAdevleEHEERREELETLEAEIEDLRETIAETEREreelaeEVRDLRERLEELEEERDDllAEAGLDD 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 386 KQNAELAKLRQELSKVSKELVEKSEAVRQDeQQRKALEAKAAAFEKQVLQLQASH-RESEEALQKRLDEVSRELCHTQSS 464
Cdd:PRK02224 307 ADAEAVEARREELEDRDEELRDRLEECRVA-AQAHNEEAESLREDADDLEERAEElREEAAELESELEEAREAVEDRREE 385
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 465 HASLRADAEKAQEQQQQMAELHSKLQSSEAEVRskcEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARD-AQDVQ 543
Cdd:PRK02224 386 IEELEEEIEELRERFGDAPVDLGNAEDFLEELR---EERDELREREAELEATLRTARERVEEAEALLEAGKCPEcGQPVE 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 544 AS---------QAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKvKNNDLREKNWKAMEALATAEQACKEKLLSLTQ 614
Cdd:PRK02224 463 GSphvetieedRERVEELEAELEDLEEEVEEVEERLERAEDLVEAED-RIERLEERREDLEELIAERRETIEEKRERAEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 615 -------------------AKEESEKQLCLIEAQTMEALLALLPEL---------SVLAQQNYTEWLQDLKEKGPTLlkh 666
Cdd:PRK02224 542 lreraaeleaeaeekreaaAEAEEEAEEAREEVAELNSKLAELKERieslerirtLLAAIADAEDEIERLREKREAL--- 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 667 ppapAEPSSDLASKLREAEETQSTLQAECDQYR------------SILAETEGMLRDLqksvEEEEQVWRAKVGAAE--- 731
Cdd:PRK02224 619 ----AELNDERRERLAEKRERKRELEAEFDEARieearedkeraeEYLEQVEEKLDEL----REERDDLQAEIGAVEnel 690
|
490 500 510 520
....*....|....*....|....*....|....*....|.
gi 1844083911 732 EELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAEL 772
Cdd:PRK02224 691 EELEELRERREALENRVEALEALYDEAEELESMYGDLRAEL 731
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
265-789 |
1.82e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 1.82e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 265 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASyrEHVKEVQQLQ 344
Cdd:PTZ00121 1320 AKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA--EEKKKADEAK 1397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 345 GKIRTLQEQLENGPNTQLARLQQENsiLRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 424
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADE--AKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 425 KAAAFEKQvlQLQASHRESEEAlQKRLDEVSRelchtqSSHASLRADaekaqeqqqqmaelhsklQSSEAEVRSKCEELS 504
Cdd:PTZ00121 1476 KKKAEEAK--KADEAKKKAEEA-KKKADEAKK------AAEAKKKAD------------------EAKKAEEAKKADEAK 1528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 505 glhgqlqeaRAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKN 584
Cdd:PTZ00121 1529 ---------KAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMK 1599
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 585 NDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQtmeallallpelsvlaQQNYTEWLQDLKEKGPTLL 664
Cdd:PTZ00121 1600 LYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAE----------------EKKKAEELKKAEEENKIKA 1663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 665 KHPPAPAEPSSDLASKLREAEETQSTLQAECDQYrsilAETEGMLRDLQKsvEEEEQVWRAKVGAAEEELQKSRVTVKHL 744
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE----AEEAKKAEELKK--KEAEEKKKAEELKKAEEENKIKAEEAKK 1737
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 1844083911 745 EEIVEKLKG-ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKE 789
Cdd:PTZ00121 1738 EAEEDKKKAeEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
701-965 |
8.17e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 8.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 701 ILAETEGMLRDLQKSVEEEEQ--------------VWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTS 766
Cdd:TIGR02168 194 ILNELERQLKSLERQAEKAERykelkaelrelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELR 273
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 767 HLEAELEKHMAAASAECQNYAKEVAGL--------------RQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHV 832
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLeqqkqilrerlanlERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 833 EDGDIAGApASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 912
Cdd:TIGR02168 354 ESLEAELE-ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEE 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 913 A--SQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKA 965
Cdd:TIGR02168 433 AelKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
398-967 |
1.32e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 398 LSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAsHRESEEALQKRLDEVSRELchtqsshASLRADAEKAQE 477
Cdd:PRK03918 195 IKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-LKEEIEELEKELESLEGSK-------RKLEEKIRELEE 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 478 QQQQMAELHSKLQSSEAEVrskcEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARdAQDVQASQAEADQQQTRLK 557
Cdd:PRK03918 267 RIEELKKEIEELEEKVKEL----KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE-INGIEERIKELEEKEERLE 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 558 ELESQVSGLEKEAIELREAVEQ-QKVKNNDLREKNWKAMEALATAEQAcKEKLLSLTQAKEESEKQLCLIEAQTMEALLA 636
Cdd:PRK03918 342 ELKKKLKELEKRLEELEERHELyEEAKAKKEELERLKKRLTGLTPEKL-EKELEELEKAKEEIEEEISKITARIGELKKE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 637 LLPELSVLaqqnytEWLQDLKEKGPTllkhppAPAEPSSDlasklrEAEETQSTLQAECDQYRSILAETEGMLRDLQKSV 716
Cdd:PRK03918 421 IKELKKAI------EELKKAKGKCPV------CGRELTEE------HRKELLEEYTAELKRIEKELKEIEEKERKLRKEL 482
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 717 EEEEqvwraKVGAAEEELQKSRVTVKHLEEIVEKLKG-ELESSDQVREHTSHLEAELEKhmaaASAECQNYAKEVAGLRQ 795
Cdd:PRK03918 483 RELE-----KVLKKESELIKLKELAEQLKELEEKLKKyNLEELEKKAEEYEKLKEKLIK----LKGEIKSLKKELEKLEE 553
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 796 LllesQSQLDAAKSEAQKQSDELALVRQQLSEMK-SHVEDGDiagapASSPEAPPAEQDPVQLK---TQLEWTEAILEDE 871
Cdd:PRK03918 554 L----KKKLAELEKKLDELEEELAELLKELEELGfESVEELE-----ERLKELEPFYNEYLELKdaeKELEREEKELKKL 624
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 872 QTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLE-----SSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQE 946
Cdd:PRK03918 625 EEELDKAFEELAETEKRLEELRKELEELEKKYSEEeyeelREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELE 704
|
570 580
....*....|....*....|.
gi 1844083911 947 QLAREKDTVKKLQEQLEKAED 967
Cdd:PRK03918 705 EREKAKKELEKLEKALERVEE 725
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
699-967 |
1.95e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.95e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 699 RSILAETEGMLRDLQKSVEE-EEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVrehtshLEAELEKHma 777
Cdd:PRK02224 179 ERVLSDQRGSLDQLKAQIEEkEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV------LEEHEERR-- 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 778 aasaecqnyaKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGdIAGAPASSPEAPPAEQDPVQL 857
Cdd:PRK02224 251 ----------EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL-LAEAGLDDADAEAVEARREEL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 858 KTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRT-AGPLESSETEEASQLKERLEKEKKLTS-------- 928
Cdd:PRK02224 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREeAAELESELEEAREAVEDRREEIEELEEeieelrer 399
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 1844083911 929 ------DLGRAATRLQELLKTTQEQLAREKD---TVKKLQEQLEKAED 967
Cdd:PRK02224 400 fgdapvDLGNAEDFLEELREERDELREREAEleaTLRTARERVEEAEA 447
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
260-926 |
2.33e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.61 E-value: 2.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 260 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELnkemAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQ---ASYREH 336
Cdd:TIGR02169 308 RSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL----EREIEEERKRRDKLTEEYAELKEELEDLRAELEevdKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 337 VKEVQQLQGKIRTLQEQLENgpntqlarLQQENSILRDALNQATSQVEsKQNAELAKLRQELSKVSKELVEKSEAVRQDE 416
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINE--------LKRELDRLQEELQRLSEELA-DLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 417 QQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 493
Cdd:TIGR02169 455 WKLEQLAADLSKYEQELYDLKEEYDRVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVG 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 494 AEVRSKCEELSGlhGQLQEARAENSQLTE--------------------RIRSIEALLEAGQARDAQDVQASQAEADQQ- 552
Cdd:TIGR02169 535 ERYATAIEVAAG--NRLNNVVVEDDAVAKeaiellkrrkagratflplnKMRDERRDLSILSEDGVIGFAVDLVEFDPKy 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 553 -------------------------QTRLKELESQV---SG------LEKEAIELREAVEQQKVKNNDLREKNWKAMEAL 598
Cdd:TIGR02169 613 epafkyvfgdtlvvedieaarrlmgKYRMVTLEGELfekSGamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSS 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 599 ATAEQACKEKLL-SLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQ-QNYTEWLQDLKEKGPTLLKHppapaepssd 676
Cdd:TIGR02169 693 LQSELRRIENRLdELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEElEEDLSSLEQEIENVKSELKE---------- 762
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 677 LASKLREAEETQSTLQAEC-DQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKS-------RVTVKHLEEIV 748
Cdd:TIGR02169 763 LEARIEELEEDLHKLEEALnDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLtlekeylEKEIQELQEQR 842
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 749 EKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEM 828
Cdd:TIGR02169 843 IDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSEL 922
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 829 KSHV-----EDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLrtag 903
Cdd:TIGR02169 923 KAKLealeeELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKL---- 998
|
730 740
....*....|....*....|...
gi 1844083911 904 plesseTEEASQLKERLEKEKKL 926
Cdd:TIGR02169 999 ------EEERKAILERIEEYEKK 1015
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
330-583 |
2.58e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.92 E-value: 2.58e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 330 QASYREHVKEVQQLQGKIRTLQEQLEngpntqlarlqqensilrdalnqatsqvesKQNAELAKLRQELSKVSKELVEKS 409
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELA------------------------------ALKKEEKALLKQLAALERRIAALA 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 410 EAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKL 489
Cdd:COG4942 69 RRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPAR 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 490 QSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKE 569
Cdd:COG4942 149 REQAEELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
250
....*....|....
gi 1844083911 570 AIELREAVEQQKVK 583
Cdd:COG4942 229 IARLEAEAAAAAER 242
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
387-604 |
9.83e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 48.99 E-value: 9.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 387 QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEVSRELCHTQS 463
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQelaALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 464 SHASLRADAEKAQEQQQQMAELHSKL----QSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDA 539
Cdd:COG4942 98 ELEAQKEELAELLRALYRLGRQPPLAlllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 540 QDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQA 604
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
679-967 |
3.23e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.14 E-value: 3.23e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 679 SKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEqvwraKVGAAEEELQKSRVTVkhleeivekLKGELESS 758
Cdd:TIGR02169 170 RKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAE-----RYQALLKEKREYEGYE---------LLKEKEAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 759 DQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ--------SDELALVRQQLSEMKS 830
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRvkekigelEAEIASLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 831 HVEDGDiagapassPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTagplESSET 910
Cdd:TIGR02169 316 ELEDAE--------ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK----EFAET 383
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*...
gi 1844083911 911 -EEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 967
Cdd:TIGR02169 384 rDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE 441
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
262-828 |
3.46e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 48.04 E-value: 3.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 262 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQ 341
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQH 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 342 QLQGKIRTLQEQLE-----------------NGPNTQLARLQQENSILRDALNQATSQVESKQNAELakLRQELSKVSKE 404
Cdd:TIGR00618 376 TLTQHIHTLQQQKTtltqklqslckeldilqREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAEL--CAAAITCTAQC 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 405 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQkRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAE 484
Cdd:TIGR00618 454 EKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL-ELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQR 532
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 485 L---HSKLQSSEAEVRSKC----EELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLK 557
Cdd:TIGR00618 533 GeqtYAQLETSEEDVYHQLtserKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLAC 612
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 558 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLAL 637
Cdd:TIGR00618 613 EQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQL 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 638 LPELSVLAQQNytEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQyrsiLAETEGMLRDLQKSVE 717
Cdd:TIGR00618 693 TYWKEMLAQCQ--TLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMH----QARTVLKARTEAHFNN 766
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 718 EEEQVWRAKVGAAEEEL-QKSRVTVKHLEEIVEKLKGELEssdQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQL 796
Cdd:TIGR00618 767 NEEVTAALQTGAELSHLaAEIQFFNRLREEDTHLLKTLEA---EIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSAT 843
|
570 580 590
....*....|....*....|....*....|..
gi 1844083911 797 LLESQSQLDaAKSEAQKQSDELALVRQQLSEM 828
Cdd:TIGR00618 844 LGEITHQLL-KYEECSKQLAQLTQEQAKIIQL 874
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
378-579 |
3.73e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 3.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 378 QATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEE---ALQKRLDEV 454
Cdd:COG4942 16 AAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAelaELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 455 SRELCHTQSSHASLRADAEKAQEQQQQMAELHSK-----------LQSSEAEVRSKCEELSGLHGQLQEARAENSQLTER 523
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEdfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1844083911 524 IRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQ 579
Cdd:COG4942 176 LEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIAR 231
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
729-976 |
4.11e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.07 E-value: 4.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 729 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREhtshleaELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAK 808
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLA-------ALERRIAALARRIRALEQELAALEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 809 SEAQKQSDELALVRQQLSEMKSHvedgdiagapaSSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTS 888
Cdd:COG4942 97 AELEAQKEELAELLRALYRLGRQ-----------PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAAL 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 889 ACRLQEELEKLRTAgplesseTEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 968
Cdd:COG4942 166 RAELEAERAELEAL-------LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
....*...
gi 1844083911 969 SSSKEGTS 976
Cdd:COG4942 239 AAERTPAA 246
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
488-952 |
8.16e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 8.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 488 KLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAgqARDAQDVQASQAEADQQQTRLKELESQVSGLE 567
Cdd:COG4717 82 EAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL--LPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 568 KEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQ 647
Cdd:COG4717 160 ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAA 239
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 648 NYTEWLQDlkekgptllkhppapAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKV 727
Cdd:COG4717 240 ALEERLKE---------------ARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEA 304
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESS-----DQVREHTSHLEAELEKHMAAASAECQNYAKEvagLRQLLLESQS 802
Cdd:COG4717 305 EELQALPALEELEEEELEELLAALGLPPDLSpeellELLDRIEELQELLREAEELEEELQLEELEQE---IAALLAEAGV 381
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 803 QLDAAKSEAQKQSDELALVRQQLSEMKSHVEdgdiagAPASSPEAPPAEQDPVQLKTQLEwteaileDEQTQRQKLTAEF 882
Cdd:COG4717 382 EDEEELRAALEQAEEYQELKEELEELEEQLE------ELLGELEELLEALDEEELEEELE-------ELEEELEELEEEL 448
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 883 EEAQTSACRLQEELEKLRTAGPLessetEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREK 952
Cdd:COG4717 449 EELREELAELEAELEQLEEDGEL-----AELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
570-932 |
8.43e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.43e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 570 AIELREAVEQQKVKNNDLREKNWKAMEALATaEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALlpelsVLAQ-QN 648
Cdd:TIGR02169 175 ALEELEEVEENIERLDLIIDEKRQQLERLRR-EREKAERYQALLKEKREYEGYELLKEKEALERQKEA-----IERQlAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 649 YTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLRE-AEETQSTLQAEcdqyrsiLAETEGMLRDLQKSVEEEEQvwraKV 727
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEK-------IGELEAEIASLERSIAEKER----EL 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 728 GAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAA 807
Cdd:TIGR02169 318 EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 808 KSE-------AQKQSDELALVRQQLSEMKSHVEDGdIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTA 880
Cdd:TIGR02169 398 KREinelkreLDRLQEELQRLSEELADLNAAIAGI-EAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKE 476
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1844083911 881 EFEEAQTSACRLQEELEKLR-TAGPLESSETEEASQ---LKERLEKEKKLTSDLGR 932
Cdd:TIGR02169 477 EYDRVEKELSKLQRELAEAEaQARASEERVRGGRAVeevLKASIQGVHGTVAQLGS 532
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
391-763 |
8.94e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 8.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 391 LAKLRQELSKVSKElveKSEAVRQDEQQRKALEAKAAAFEKQVLqlqaSHRESEEALQKRLDEVSRELchtqsshaslra 470
Cdd:TIGR02169 193 IDEKRQQLERLRRE---REKAERYQALLKEKREYEGYELLKEKE----ALERQKEAIERQLASLEEEL------------ 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 471 dAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEAD 550
Cdd:TIGR02169 254 -EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEID 332
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 551 QQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKnwkaMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQT 630
Cdd:TIGR02169 333 KLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE----LEEVDKEFAETRDELKDYREKLEKLKREINELKREL 408
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 631 MEALLALLPELSVLAqqnytewlqDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLR 710
Cdd:TIGR02169 409 DRLQEELQRLSEELA---------DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 1844083911 711 DLQK---SVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSDQVRE 763
Cdd:TIGR02169 480 RVEKelsKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVHGTVAQLGSVGE 535
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
324-587 |
9.88e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 46.44 E-value: 9.88e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 324 AVQARMQAsyrehVKEVQQLQGKIRTLQEQLENGPNT--QLARLQQENSILRDALNQATSQVESKQnAELAKL------- 394
Cdd:PRK11281 40 DVQAQLDA-----LNKQKLLEAEDKLVQQDLEQTLALldKIDRQKEETEQLKQQLAQAPAKLRQAQ-AELEALkddndee 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 395 -RQELSKVSKELVEKSEAVRQDEQQRkaLEAKAAAFEKQVLQLQASHRESEEAL---QKRLDEVSRELCHTQSSHASLRA 470
Cdd:PRK11281 114 tRETLSTLSLRQLESRLAQTLDQLQN--AQNDLAEYNSQLVSLQTQPERAQAALyanSQRLQQIRNLLKGGKVGGKALRP 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 471 DAEKaqeqqqqmaelhsKLQSseaevrskceELSGLHGQLQEARAE---NSQLTERIRSIEALLEAGQARDAQDVQASQA 547
Cdd:PRK11281 192 SQRV-------------LLQA----------EQALLNAQNDLQRKSlegNTQLQDLLQKQRDYLTARIQRLEHQLQLLQE 248
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1844083911 548 EADQQqtRLKELESQVsgleKEAIELREAveqQKVKNNDL 587
Cdd:PRK11281 249 AINSK--RLTLSEKTV----QEAQSQDEA---ARIQANPL 279
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
317-458 |
9.90e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 9.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 317 AREQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQ 396
Cdd:COG4913 267 ARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARL-EAELERLEARLDALREELDELEAQIRGNGGDRLEQLER 345
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1844083911 397 ELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSREL 458
Cdd:COG4913 346 EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEAL 407
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
260-964 |
1.50e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 260 DPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAvqarmQASYREHVKE 339
Cdd:pfam02463 314 EKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAK-----KKLESERLSS 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 340 VQQLQGKIRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQ------NAELAKLRQELSKVSKELVEKSEAVR 413
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEesielkQGKLTEEKEELEKQELKLLKDELELK 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 414 QDEQQRKALEaKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSS- 492
Cdd:pfam02463 469 KSEDLLKETQ-LVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISt 547
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 493 ---EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQ-VSGLEK 568
Cdd:pfam02463 548 aviVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKrAKVVEG 627
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 569 EAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQN 648
Cdd:pfam02463 628 ILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQR 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 649 YTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVG 728
Cdd:pfam02463 708 EKEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 729 AAEEELQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELE-----KHMAAASAECQNYAKEVAGLRQLLLESQSQ 803
Cdd:pfam02463 788 VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEeeleeLALELKEEQKLEKLAEEELERLEEEITKEE 867
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 804 LDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFE 883
Cdd:pfam02463 868 LLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEADE 947
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 884 EAQTSACRLQEELEKLRTAGPLESSETEEASQLKERLEKEKKltsdlgraatrlQELLKTTQEQLAREKDTVKKLQEQLE 963
Cdd:pfam02463 948 KEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEER------------YNKDELEKERLEEEKKKLIRAIIEET 1015
|
.
gi 1844083911 964 K 964
Cdd:pfam02463 1016 C 1016
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
262-977 |
1.68e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 262 VAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEvq 341
Cdd:pfam02463 164 GSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDL-- 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 342 qLQGKIRTLQEQLENgpNTQLARLQQENSILRDALNQATSQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKA 421
Cdd:pfam02463 242 -LQELLRDEQEEIES--SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKE 318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 422 LEAKAAAFEKQVLQLQashrESEEALQKRLDEVSRelchtqsshaslradaekAQEQQQQMAELHSKLQSSEAEVRSKCE 501
Cdd:pfam02463 319 SEKEKKKAEKELKKEK----EEIEELEKELKELEI------------------KREAEEEEEEELEKLQEKLEQLEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 502 ELSGLHGQLQEARAENSQLTERIRSIEalleagQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQK 581
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEE------EKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEK 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 582 VKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGP 661
Cdd:pfam02463 451 EELEKQELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGR 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 662 TLLKHPPAPAEpssdLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTV 741
Cdd:pfam02463 531 LGDLGVAVENY----KVAISTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLA 606
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 742 KHLE---EIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAK---EVAGLRQLLLESQSQLDAAKSEAQKQS 815
Cdd:pfam02463 607 QLDKatlEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEglaEKSEVKASLSELTKELLEIQELQEKAE 686
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 816 DELALVRQQLSEMKSHVEDGDIagapasspeappaEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACrLQEE 895
Cdd:pfam02463 687 SELAKEEILRRQLEIKKKEQRE-------------KEELKKLKLEAEELLADRVQEAQDKINEELKLLKQKIDEE-EEEE 752
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 896 LEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLgrAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEGT 975
Cdd:pfam02463 753 EKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLK--VEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 830
|
..
gi 1844083911 976 SV 977
Cdd:pfam02463 831 KE 832
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
786-966 |
1.85e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 786 YAKEVAGLRQLLLESQSQLDAAKSEAQKQSDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPpAEQDPVQLKTQLEWTE 865
Cdd:COG1196 230 LLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYE-LLAELARLEQDIARLE 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 866 AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQ 945
Cdd:COG1196 309 ERRRELEERLEELEEELAELEEELEELEEELEELEEE--LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180
....*....|....*....|.
gi 1844083911 946 EQLAREKDTVKKLQEQLEKAE 966
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEE 407
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
267-458 |
2.67e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 267 RQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQASYREHVKEVQQLQGK 346
Cdd:COG4913 245 EDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 347 IRTLQEQLENGPNTQLARLQQENSILRDALNQATSQVESKQN-------------AELAKLRQELSKVSKELVEKSEAVR 413
Cdd:COG4913 325 LDELEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEAllaalglplpasaEEFAALRAEAAALLEALEEELEALE 404
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1844083911 414 QD----EQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSREL 458
Cdd:COG4913 405 EAlaeaEAALRDLRRELRELEAEIASLERRKSNIPARLLALRDALAEAL 453
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
676-948 |
2.88e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 44.90 E-value: 2.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 676 DLASKLREAEETQSTLQAEcdqyrsiLAETEGMLRDLQKSVEEEEQVwRAKVGAAEEELQKSRvtvkhlEEIvEKLKGEL 755
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQD-------LEQTLALLDKIDRQKEETEQL-KQQLAQAPAKLRQAQ------AEL-EALKDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 756 esSDQVREHTSHLE-AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLD---AAKSEAQKQSDELalvRQQLSemksh 831
Cdd:PRK11281 111 --DEETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPEraqAALYANSQRLQQI---RNLLK----- 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 832 veDGDIAGAPASSPE--APPAEQDPVQLKTQLEWTEA----ILED-EQTQRQKLTAEFEEAQTSACRLQEEL-EKLR--- 900
Cdd:PRK11281 181 --GGKVGGKALRPSQrvLLQAEQALLNAQNDLQRKSLegntQLQDlLQKQRDYLTARIQRLEHQLQLLQEAInSKRLtls 258
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 1844083911 901 --TAGPLESSETEEASQ----LKERLEKEKKLTSDLGRAATRLQELlktTQEQL 948
Cdd:PRK11281 259 ekTVQEAQSQDEAARIQanplVAQELEINLQLSQRLLKATEKLNTL---TQQNL 309
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
389-629 |
2.92e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.94 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 389 AELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKqvLQLQASHREsEEALQKRLDEVSRELCHTQSSHASL 468
Cdd:COG3096 836 AELAALRQRRSELERELAQHRAQEQQLRQQLDQLKEQLQLLNK--LLPQANLLA-DETLADRLEELREELDAAQEAQAFI 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 469 RADAEKAQEQQQQMAELHSKLQSSEA-------------EVRSKCEELSGLHGQL--------QEARAENSQLTERIRsi 527
Cdd:COG3096 913 QQHGKALAQLEPLVAVLQSDPEQFEQlqadylqakeqqrRLKQQIFALSEVVQRRphfsyedaVGLLGENSDLNEKLR-- 990
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 528 EALLEAGQARDAQDVQASQAEADQQQTrLKELESQVSGLEKEAIELREAVEQQKvknnDLREKNWKAMEALATAE-QACK 606
Cdd:COG3096 991 ARLEQAEEARREAREQLRQAQAQYSQY-NQVLASLKSSRDAKQQTLQELEQELE----ELGVQADAEAEERARIRrDELH 1065
|
250 260
....*....|....*....|...
gi 1844083911 607 EKLLSLTQAKEESEKQLCLIEAQ 629
Cdd:COG3096 1066 EELSQNRSRRSQLEKQLTRCEAE 1088
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
314-580 |
2.96e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 314 QLVAREQEITAVQARMQasyrEHVKEVQQLQGKIRTLQEQLEngpntQLARLQQENSILRDALnQATSQVESKQ------ 387
Cdd:COG4913 611 KLAALEAELAELEEELA----EAEERLEALEAELDALQERRE-----ALQRLAEYSWDEIDVA-SAEREIAELEaelerl 680
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 388 ---NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashreseEALQKRLDEVSRELCHTQSS 464
Cdd:COG4913 681 dasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEEL-----------DELQDRLEAAEDLARLELRA 749
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 465 HASLRADAEKAQEqqqqmaelhsklqsSEAEVRSKceelsgLHGQLQEARAENSQLTERIRSIealLEAGQAR---DAQD 541
Cdd:COG4913 750 LLEERFAAALGDA--------------VERELREN------LEERIDALRARLNRAEEELERA---MRAFNREwpaETAD 806
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 1844083911 542 VQASQAEADQQQTRLKELESqvSGL-EKEAiELREAVEQQ 580
Cdd:COG4913 807 LDADLESLPEYLALLDRLEE--DGLpEYEE-RFKELLNEN 843
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
329-564 |
3.10e-04 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 44.30 E-value: 3.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 329 MQASYREHVKEVQQLQGKIRTLQEQLEngpntqlarlQQENSIlrdalNQATSQVESKQNaELAKLRQELSKVSKElVEK 408
Cdd:PRK11637 52 IQQDIAAKEKSVRQQQQQRASLLAQLK----------KQEEAI-----SQASRKLRETQN-TLNQLNKQIDELNAS-IAK 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 409 SEAvRQDEQQRKALEAKAAAF---EKQVLQLQASHRESE-------------EALQKRLDEVSRELCHTQSSHASLRADA 472
Cdd:PRK11637 115 LEQ-QQAAQERLLAAQLDAAFrqgEHTGLQLILSGEESQrgerilayfgylnQARQETIAELKQTREELAAQKAELEEKQ 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 473 EKAQEQQQQMAELHSKLQSSEAEvRSKCeeLSGLHG-------QLQEARAENSQLTERIRSIEALLEA---GQARDAQDV 542
Cdd:PRK11637 194 SQQKTLLYEQQAQQQKLEQARNE-RKKT--LTGLESslqkdqqQLSELRANESRLRDSIARAEREAKAraeREAREAARV 270
|
250 260
....*....|....*....|..
gi 1844083911 543 QASQAEADQQQTRLKELESQVS 564
Cdd:PRK11637 271 RDKQKQAKRKGSTYKPTESERS 292
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
268-424 |
4.15e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 4.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 268 QLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQ-LVAREQEITAVQARMQASYREHVKEVQQLQGK 346
Cdd:COG3206 220 QLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQqLRAQLAELEAELAELSARYTPNHPDVIALRAQ 299
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1844083911 347 IRTLQEQLENGPNTQLARLQQENSILRdalnqatsQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 424
Cdd:COG3206 300 IAALRAQLQQEAQRILASLEAELEALQ--------AREASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYES 369
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
351-966 |
5.51e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 5.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 351 QEQLENGPNTQLARLQQENSILRDALNQATSQVESKQNAELAKlRQELSKVSKELVEKSEAVRQDEQQRKALEAkaaafe 430
Cdd:pfam15921 140 QEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIEQLRKMMLSH-EGVLQEIRSILVDFEEASGKKIYEHDSMST------ 212
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 431 kqvlqlqASHRESEEALQKRLDEVSRELCHTQSshaslradaekaqeqqqQMAELHSKLQSSEAEVRSKCEELsglhgqL 510
Cdd:pfam15921 213 -------MHFRSLGSAISKILRELDTEISYLKG-----------------RIFPVEDQLEALKSESQNKIELL------L 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 511 QEARAENSQL-TERIRSIEALLE-AGQARDAQDVQASQAEADQQQTR---------LKELESQVSGLEKeaiELREAVEQ 579
Cdd:pfam15921 263 QQHQDRIEQLiSEHEVEITGLTEkASSARSQANSIQSQLEIIQEQARnqnsmymrqLSDLESTVSQLRS---ELREAKRM 339
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 580 QKVKNNDLREKnwkameaLATAEQACKEKLLSLTQAKEES---EKQLclieAQTMEALLALLPELSVLAQQNYTEWLQDL 656
Cdd:pfam15921 340 YEDKIEELEKQ-------LVLANSELTEARTERDQFSQESgnlDDQL----QKLLADLHKREKELSLEKEQNKRLWDRDT 408
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 657 KEKgpTLLKHPPAPAEpssDLASKLREAEETQSTLQAECD-QYRSILAETEGMLRDLQK--SVEEEEQVWRAKVGAAEEE 733
Cdd:pfam15921 409 GNS--ITIDHLRRELD---DRNMEVQRLEALLKAMKSECQgQMERQMAAIQGKNESLEKvsSLTAQLESTKEMLRKVVEE 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 734 LQKSRVTVKHLEEIVEKLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLllesQSQLDAAKSEAQK 813
Cdd:pfam15921 484 LTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNV----QTECEALKLQMAE 559
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 814 QSDELALVRQQLSEMKSHV-EDGDIAGApasspeappAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRL 892
Cdd:pfam15921 560 KDKVIEILRQQIENMTQLVgQHGRTAGA---------MQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL 630
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 893 QEELEKLRTAGPLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKD-TVKKLQEQLEKAE 966
Cdd:pfam15921 631 ELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMEtTTNKLKMQLKSAQ 705
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
265-499 |
6.09e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.21 E-value: 6.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 265 LKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAkaaageakvkkQLVAREQEITAVQARMqasyREHVKEVQQLQ 344
Cdd:COG4942 32 LQQEIAELEKELAALKKEEKALLKQLAALERRIAALAR-----------RIRALEQELAALEAEL----AELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 345 GKIRTLQEQLENgpntQLARLQQENSILRDALnqatsQVESKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEA 424
Cdd:COG4942 97 AELEAQKEELAE----LLRALYRLGRQPPLAL-----LLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRA 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 425 KAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSK 499
Cdd:COG4942 168 ELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
373-585 |
7.54e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.47 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 373 RDALNQATSQVESKQNAELAKLRQELSKVSKELVE--KSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHREseeaLQKR 450
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAEAALEEfrQKNGLVDLSEEAKLLLQQLSELESQLAEARAELAE----AEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 451 LDEVSRELCHTQSSHASLRADAEKAQeqqqqmaeLHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRsieAL 530
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPVIQQ--------LRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQ---QE 310
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 531 LEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNN 585
Cdd:COG3206 311 AQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
314-529 |
1.38e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 314 QLVAREQEITAVQARMQAsYREHVKEVQqLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQVESK------- 386
Cdd:COG3206 183 QLPELRKELEEAEAALEE-FRQKNGLVD-LSEEAKLLLQQLSEL-ESQLAEARAELAEAEARLAALRAQLGSGpdalpel 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 387 -QNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVlqlqashresEEALQKRLDEVSRELCHTQSSH 465
Cdd:COG3206 260 lQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQL----------QQEAQRILASLEAELEALQARE 329
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1844083911 466 ASLRADAEKAQEQQQQMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEA 529
Cdd:COG3206 330 ASLQAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
853-974 |
1.68e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 1.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 853 DPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGR 932
Cdd:COG4913 282 RLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQ--IRGNGGDRLEQLEREIERLERELEERER 359
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 1844083911 933 AATRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDGSSSKEG 974
Cdd:COG4913 360 RRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELE 401
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
523-969 |
2.01e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.95 E-value: 2.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 523 RIRSIEALLEAGQARDAQDVQASQAEADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAE 602
Cdd:PRK02224 168 RERASDARLGVERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHE 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 603 QAcKEKLLSLTQAKEESEkqlcliEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKL- 681
Cdd:PRK02224 248 ER-REELETLEAEIEDLR------ETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELe 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 682 REAEETQSTLQaECDQYRSILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELES---- 757
Cdd:PRK02224 321 DRDEELRDRLE-ECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEElrer 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 758 ----SDQVREHTSHLEAELEKH------MAAASAECQNYAKEVAGLRQLLLESQ--------------SQLDAAKSEAQK 813
Cdd:PRK02224 400 fgdaPVDLGNAEDFLEELREERdelrerEAELEATLRTARERVEEAEALLEAGKcpecgqpvegsphvETIEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 814 QSDELALVRQQLSEMKSHVEDGDIAGAPASSPE-----APPAEQDPVQLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTS 888
Cdd:PRK02224 480 LEAELEDLEEEVEEVEERLERAEDLVEAEDRIErleerREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 889 ACRLQEELEKLR-TAGPLESSETEEASQLK--ERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQE---QL 962
Cdd:PRK02224 560 AAEAEEEAEEAReEVAELNSKLAELKERIEslERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRErkrEL 639
|
....*..
gi 1844083911 963 EKAEDGS 969
Cdd:PRK02224 640 EAEFDEA 646
|
|
| EzrA |
pfam06160 |
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like ... |
692-968 |
2.19e-03 |
|
Septation ring formation regulator, EzrA; During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerizes into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation. The structure contains 5 spectrin like alpha helical repeats.
Pssm-ID: 428797 [Multi-domain] Cd Length: 542 Bit Score: 41.76 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 692 QAECDQYRSILAETEGMLRDLQKSVEE----EEQVwRAKVGAAEEELQKSR-----------VTVKHLEEIVEKLKGELE 756
Cdd:pfam06160 85 KKALDEIEELLDDIEEDIKQILEELDEllesEEKN-REEVEELKDKYRELRktllanrfsygPAIDELEKQLAEIEEEFS 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 757 SSDQVREHTSHLEA-----ELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQ---------SDELALVR 822
Cdd:pfam06160 164 QFEELTESGDYLEArevleKLEEETDALEELMEDIPPLYEELKTELPDQLEELKEGYREMEEEgyalehlnvDKEIQQLE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 823 QQLSEMKSHVEDGDIAGApasspeappaEQDPVQLKTQLEWTEAILEDE-------QTQRQKLTAEFEEAQTSACRLQEE 895
Cdd:pfam06160 244 EQLEENLALLENLELDEA----------EEALEEIEERIDQLYDLLEKEvdakkyvEKNLPEIEDYLEHAEEQNKELKEE 313
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 896 LEKLRTAGPLESSETEEASQLKERLEK-EKKLTSDLGRAA------TRLQELLKTTQEQLAREKDTVKKLQEQLEKAEDG 968
Cdd:pfam06160 314 LERVQQSYTLNENELERVRGLEKQLEElEKRYDEIVERLEekevaySELQEELEEILEQLEEIEEEQEEFKESLQSLRKD 393
|
|
| PRK11637 |
PRK11637 |
AmiB activator; Provisional |
395-607 |
2.57e-03 |
|
AmiB activator; Provisional
Pssm-ID: 236942 [Multi-domain] Cd Length: 428 Bit Score: 41.22 E-value: 2.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 395 RQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESE---EALQKRLDEVSRELCHTQSSHASLRAD 471
Cdd:PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQntlNQLNKQIDELNASIAKLEQQQAAQERL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 472 AEKAQEQQQQMAElHSKLQ---SSEAEVRSkcEELSGLHGQLQEARAEN----SQLTERIRSIEALLEAGQARDAQ---D 541
Cdd:PRK11637 126 LAAQLDAAFRQGE-HTGLQlilSGEESQRG--ERILAYFGYLNQARQETiaelKQTREELAAQKAELEEKQSQQKTllyE 202
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 542 VQASQAEADQQQT-RLKELESQVSGLEKEAIELREaveqqkVKNND--LREKNWKA-MEALATAEQACKE 607
Cdd:PRK11637 203 QQAQQQKLEQARNeRKKTLTGLESSLQKDQQQLSE------LRANEsrLRDSIARAeREAKARAEREARE 266
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
252-607 |
2.77e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.68 E-value: 2.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 252 WHKATQKGDPVAILKRQLEEKEKLLATEQEDAAVAKSKLRELNKEMAAEKAKAAAGEAKVKKQLVAREQEITAVQARMQA 331
Cdd:COG4717 134 LEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEE 213
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 332 SYREHVKEVQQLQGKIRTLQEQLENGPNTQlaRLQQENSILRDA-------LNQATSQVESKQNAELAKLRQELSKVSKE 404
Cdd:COG4717 214 ELEEAQEELEELEEELEQLENELEAAALEE--RLKEARLLLLIAaallallGLGGSLLSLILTIAGVLFLVLGLLALLFL 291
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 405 LVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKR----LDEVSRELCHTQSSHASLRADAEKAQEQQQ 480
Cdd:COG4717 292 LLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEelleLLDRIEELQELLREAEELEEELQLEELEQE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 481 QMAELHSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQD--------VQASQAEADQQ 552
Cdd:COG4717 372 IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEeleeleeeLEELEEELEEL 451
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 1844083911 553 QTRLKELESQVSGLEK--EAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKE 607
Cdd:COG4717 452 REELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWAALKLALELLEEAREE 508
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
315-966 |
3.24e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 3.24e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 315 LVAREQEITAVQARMQASYREHVKEVQQLQGKIRTLQEQLENGPN--TQLARLQQENSILRDALNQATSQVESKQN--AE 390
Cdd:TIGR00618 199 LTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHAylTQKREAQEEQLKKQQLLKQLRARIEELRAqeAV 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 391 LAKLRQELSKVSK--ELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQAsHRESEEALQKRLDEVSRELCHTQSSHASL 468
Cdd:TIGR00618 279 LEETQERINRARKaaPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLM-KRAAHVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 469 RADAEKAQEQQQQMAELHSKLQsseaEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDVQA-SQA 547
Cdd:TIGR00618 358 RDAHEVATSIREISCQQHTLTQ----HIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAkKQQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 548 EADQQQTRLKELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIE 627
Cdd:TIGR00618 434 ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHP 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 628 AQTMEALLALLPELSVLAQQNYTewLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEG 707
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQRGEQT--YAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQN 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 708 MLRDLQKSVEEEEQVWRAKVGAAEEEL---------QKSRVTVKHLEEIVEKLKGELESS------DQVREH---TSHLE 769
Cdd:TIGR00618 592 ITVRLQDLTEKLSEAEDMLACEQHALLrklqpeqdlQDVRLHLQQCSQELALKLTALHALqltltqERVREHalsIRVLP 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 770 AELEKHMAAASAECQNYAKEVAGLRQLLLESQSQL---------------------DAAKSEAQKQSDELALVRQQLSEM 828
Cdd:TIGR00618 672 KELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLrelethieeydrefneienasSSLGSDLAAREDALNQSLKELMHQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 829 KSHVEDGDIAGAPASSPEAPPAEQdpvqLKTQLEWTEAILEDEQTQRQKLTAEFE--EAQTSACRLQEELEKLRTAGPLE 906
Cdd:TIGR00618 752 ARTVLKARTEAHFNNNEEVTAALQ----TGAELSHLAAEIQFFNRLREEDTHLLKtlEAEIGQEIPSDEDILNLQCETLV 827
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 907 SSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQlarekdtvKKLQEQLEKAE 966
Cdd:TIGR00618 828 QEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQ--------AKIIQLSDKLN 879
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
730-966 |
4.17e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 4.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 730 AEEELQKSRVTVKHLEEivekLKGELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAAKS 809
Cdd:COG1196 220 EELKELEAELLLLKLRE----LEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 810 EAQKQSDELALVRQQLSEMKSHVEDGdiagapasspeappAEQDPVQLKTQLEWTEAI--LEDEQT----QRQKLTAEFE 883
Cdd:COG1196 296 ELARLEQDIARLEERRRELEERLEEL--------------EEELAELEEELEELEEELeeLEEELEeaeeELEEAEAELA 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 884 EAQTSACRLQEELEKLRTAgpLESSETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQEQLAREKDTVKKLQEQLE 963
Cdd:COG1196 362 EAEEALLEAEAELAEAEEE--LEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEE 439
|
...
gi 1844083911 964 KAE 966
Cdd:COG1196 440 EEE 442
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
334-768 |
4.63e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 334 REHVKEVQQLQGKIRTLQEQLENGpNTQLARLQQENSILRDALNQATSQvesKQNAELAKLRQELSKVSKELVEKSEAVR 413
Cdd:COG4717 77 EEELKEAEEKEEEYAELQEELEEL-EEELEELEAELEELREELEKLEKL---LQLLPLYQELEALEAELAELPERLEELE 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 414 QDEQQRKALEAKAAAFEKQVLQLQashRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEQQQQMAELHSKLQSSE 493
Cdd:COG4717 153 ERLEELRELEEELEELEAELAELQ---EELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 494 AEVRSKCEELSgLHGQLQEAR----------------AENSQLTERIRSIEALLEAGQARDAQDVQASQAEADQQQTRLK 557
Cdd:COG4717 230 EQLENELEAAA-LEERLKEARlllliaaallallglgGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQ 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 558 ELESQVSGLEKEAIELREAVEQQKVKNNDLREKNWKAMEALATAEQACKEKLLSLTQAKEESEKQLCLIEAQTMEALLAL 637
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALLAEAGVEDEEELR 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 638 LPELSVLAQQNYTEWLQDLKEKGPTLLK--HPPAPAEPSSDLASKLREAEETQSTLQAECDQYRSILAETEGMLRDLQKS 715
Cdd:COG4717 389 AALEQAEEYQELKEELEELEEQLEELLGelEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEED 468
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 1844083911 716 -----VEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLkgELESSDQVREHTSHL 768
Cdd:COG4717 469 gelaeLLQELEELKAELRELAEEWAALKLALELLEEAREEY--REERLPPVLERASEY 524
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
342-569 |
6.30e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 6.30e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 342 QLQGKIRTLQE--QLENGPNTQLARLQQENSILRDALNQATSQVESK---QNAELAKLRQELSKVSKELVEKSEAVRQDE 416
Cdd:pfam07888 35 RLEECLQERAEllQAQEAANRQREKEKERYKRDREQWERQRRELESRvaeLKEELRQSREKHEELEEKYKELSASSEELS 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 417 QQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSSHASLRADAEKAQEqqqqmaeLHSKLQSSEAEV 496
Cdd:pfam07888 115 EEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQ-------LQAKLQQTEEEL 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1844083911 497 RSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQARDAQDvQASQAEADQQQTRLKELESQVSGLEKE 569
Cdd:pfam07888 188 RSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAEN-EALLEELRSLQERLNASERKVEGLGEE 259
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
729-967 |
7.54e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 7.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 729 AAEEELQKSRVTVKHLEEIVE------KLKGELESSDQVREHTSHLEAELEKHMAAAsaecqnyakEVAGLRQLLLESQS 802
Cdd:COG4913 239 RAHEALEDAREQIELLEPIRElaeryaAARERLAELEYLRAALRLWFAQRRLELLEA---------ELEELRAELARLEA 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 803 QLDAAKSEAQKQSDELALVRQQLSEmkshVEDGDIAgapasspeappaeqdpvQLKTQLEWTEAILEDEQTQRQkltaef 882
Cdd:COG4913 310 ELERLEARLDALREELDELEAQIRG----NGGDRLE-----------------QLEREIERLERELEERERRRA------ 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 883 eeaqtsacRLQEELEKLRTAGPLESSE-TEEASQLKERLEkekkltsdlgraatRLQELLKTTQEQLAREKDTVKKLQEQ 961
Cdd:COG4913 363 --------RLEALLAALGLPLPASAEEfAALRAEAAALLE--------------ALEEELEALEEALAEAEAALRDLRRE 420
|
....*.
gi 1844083911 962 LEKAED 967
Cdd:COG4913 421 LRELEA 426
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
391-721 |
8.05e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 40.32 E-value: 8.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 391 LAKLRQELSKVSKELVEKSeaVRQDEQQRkaLEAKAAAFEKQVLQ--LQASHRESEEALQKRLDEVSRELchtqSSHASL 468
Cdd:COG3096 787 LEELRAERDELAEQYAKAS--FDVQKLQR--LHQAFSQFVGGHLAvaFAPDPEAELAALRQRRSELEREL----AQHRAQ 858
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 469 RADAEKAQEQQQQMAELHSKLQSS-----EAEVRSKCEELSGLHGQLQEARAENSQLTERIRSIEALLEAGQaRDAQDVQ 543
Cdd:COG3096 859 EQQLRQQLDQLKEQLQLLNKLLPQanllaDETLADRLEELREELDAAQEAQAFIQQHGKALAQLEPLVAVLQ-SDPEQFE 937
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 544 ASQAEADQQQTRLKELESQVSGLEkEAIELREAV-----EQQKVKNNDLREKnwkAMEALATAEQACKEKLLSLTQAKEE 618
Cdd:COG3096 938 QLQADYLQAKEQQRRLKQQIFALS-EVVQRRPHFsyedaVGLLGENSDLNEK---LRARLEQAEEARREAREQLRQAQAQ 1013
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 619 SEKQLclieaQTMEALLALLPElsvlAQQNYTEWLQDLKEKGPtllkhpPAPAEPSSDLASKLREAEETQSTLQAECDQY 698
Cdd:COG3096 1014 YSQYN-----QVLASLKSSRDA----KQQTLQELEQELEELGV------QADAEAEERARIRRDELHEELSQNRSRRSQL 1078
|
330 340
....*....|....*....|...
gi 1844083911 699 RSILAETEGMLRDLQKSVEEEEQ 721
Cdd:COG3096 1079 EKQLTRCEAEMDSLQKRLRKAER 1101
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
388-614 |
8.31e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.33 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 388 NAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQlqaSHRESEEALQKRLDEVSRELCHTQSSHAS 467
Cdd:PRK04863 836 EAELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPR---LNLLADETLADRVEEIREQLDEAEEAKRF 912
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 468 LRADAEKAqeqqqqmaelhSKLQSSEAEVRSKCEELSGLHGQLQEARAENSQLTERIRsieALLEAGQAR------DAQD 541
Cdd:PRK04863 913 VQQHGNAL-----------AQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAF---ALTEVVQRRahfsyeDAAE 978
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1844083911 542 VQASQAEADQQ-QTRLKELESQvsglekeaieLREAVEQQKVKNNDLREKNwKAMEALATAEQACKEKLLSLTQ 614
Cdd:PRK04863 979 MLAKNSDLNEKlRQRLEQAEQE----------RTRAREQLRQAQAQLAQYN-QVLASLKSSYDAKRQMLQELKQ 1041
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
385-967 |
9.11e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.95 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 385 SKQNAELAKLRQELSKVSKELVEKSEAVRQDEQQRKALEAKAAAFEKQVLQLQASHRESEEALQKRLDEVSRELCHTQSS 464
Cdd:TIGR00618 162 SKEKKELLMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 465 HASLRADAEKAQEQqqqmaelhSKLQSSEAEVRSKCEELSGL---HGQLQEARAENSQLTERIRSIEALLEAGQARDA-- 539
Cdd:TIGR00618 242 HAYLTQKREAQEEQ--------LKKQQLLKQLRARIEELRAQeavLEETQERINRARKAAPLAAHIKAVTQIEQQAQRih 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 540 -----------------QDVQASQAEADQQQTRLKELESQVSGLEKEAiELREAVEQQKVKNNDLREKNWKAMEALATAE 602
Cdd:TIGR00618 314 telqskmrsrakllmkrAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAH-EVATSIREISCQQHTLTQHIHTLQQQKTTLT 392
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 603 QACKEKLLSLTQAKEESEKQLCLIEAQTMEALLALLPELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEpssDLASKLR 682
Cdd:TIGR00618 393 QKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQ---ESAQSLK 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 683 EAEETQSTLQAECDQYRSILAETEGMLRDLQK---------SVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKG 753
Cdd:TIGR00618 470 EREQQLQTKEQIHLQETRKKAVVLARLLELQEepcplcgscIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYH 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 754 ELESSDQVREHTSHLEAELEKHMAAASAECQNYAKEVAGLRQLLLESQSQLDAaksEAQKQSDELALVRQQLSEMKSHVE 833
Cdd:TIGR00618 550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEK---LSEAEDMLACEQHALLRKLQPEQD 626
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1844083911 834 DGDIagapasSPEAPPAEQDPVQLKTQLEWTE-AILEDEQTQRQKLTAEFEEAQTSACRLQEELEKLRTAGPLESSETEE 912
Cdd:TIGR00618 627 LQDV------RLHLQQCSQELALKLTALHALQlTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLA 700
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*
gi 1844083911 913 ASQLKERLEKEKKLTSDlgRAATRLQELLKTTQEQLAREKDTVKKLQEQLEKAED 967
Cdd:TIGR00618 701 QCQTLLRELETHIEEYD--REFNEIENASSSLGSDLAAREDALNQSLKELMHQAR 753
|
|
| |
