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Conserved domains on  [gi|5881417|ref|NP_007763|]
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NADH dehydrogenase subunit 4L (mitochondrion) [Branchiostoma floridae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Oxidored_q2 super family cl00492
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
8-90 2.98e-16

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


The actual alignment was detected with superfamily member MTH00126:

Pssm-ID: 444937  Cd Length: 98  Bit Score: 67.30  E-value: 2.98e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    8 FLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYPLMIA-LVLLTFSACEASSGLALLVLISRSHGSDLLK 86
Cdd:MTH00126 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAApMLLLAFSACEASAGLALLVATARTHGTDRLQ 91


                ....
gi 5881417   87 SFNL 90
Cdd:MTH00126 92 NLNL 95
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 8-90 2.98e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 67.30  E-value: 2.98e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    8 FLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYPLMIA-LVLLTFSACEASSGLALLVLISRSHGSDLLK 86
Cdd:MTH00126 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAApMLLLAFSACEASAGLALLVATARTHGTDRLQ 91


                ....
gi 5881417   87 SFNL 90
Cdd:MTH00126 92 NLNL 95
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-90 2.24e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 44.48  E-value: 2.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417     1 MLIMILIFLIALLGLgLSQTHLLSVLLCLEMMMVSLYLGLGMVSIS-GLHYPLMIALVLLTFSACEASSGLALLVLISRS 79
Cdd:pfam00420  3 LLLSGLLFLIGLYGL-LLRRNLLRVLLSLELMLNAVNLALVLFGRLtADPLPQALILTAIVIAAAEAAVGLALLVRIYRT 81

                         90
                 ....*....|.
gi 5881417    80 HGSDLLKSFNL 90
Cdd:pfam00420 82 HGTDDVDSLNL 92
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-90 8.23e-03

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 32.34  E-value: 8.23e-03
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417   1 MLIMILIFLIALLGLgLSQTHLLSVLLCLEMMMVSLylGLGMVSISGLHYPL---MIALVLLTFSACEASSGLALLVLIS 77
Cdd:COG0713  7 LILAAILFAIGLYGV-LTRRNLIVVLMSIELMLNAV--NLNLVAFSRYLGDLdgqVFALFVIAVAAAEVAVGLAIIVALY 83

                       90
               ....*....|...
gi 5881417  78 RSHGSDLLKSFNL 90
Cdd:COG0713 84 RNRGTIDVDDLNE 96
 
Name Accession Description Interval E-value
ND4L MTH00126
NADH dehydrogenase subunit 4L; Provisional
 8-90 2.98e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177185  Cd Length: 98  Bit Score: 67.30  E-value: 2.98e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    8 FLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYPLMIA-LVLLTFSACEASSGLALLVLISRSHGSDLLK 86
Cdd:MTH00126 12 FILGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWALQLESTSFSAApMLLLAFSACEASAGLALLVATARTHGTDRLQ 91


                ....
gi 5881417   87 SFNL 90
Cdd:MTH00126 92 NLNL 95
ND4L MTH00181
NADH dehydrogenase subunit 4L; Provisional
 1-91 4.75e-16

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214450  Cd Length: 93  Bit Score: 66.51  E-value: 4.75e-16
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    1 MLIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYP-LMIALVLLTFSACEASSGLALLVLISRS 79
Cdd:MTH00181  2 MFVFISAFILLLLGLSLYKTHLLSLLLCLEGMMLFLFLLLALFSLLSSSSSmLMFGLILLTFSACEAVLGLSLLVATNRT 81

                        90
                ....*....|..
gi 5881417   80 HGSDLLKSFNLS 91
Cdd:MTH00181 82 HGSDHLLKFNLL 93
ND4L MTH00125
NADH dehydrogenase subunit 4L; Provisional
 2-90 1.20e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177184  Cd Length: 98  Bit Score: 65.64  E-value: 1.20e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    2 LIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYPLMIA-LVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00125  6 FSLYTAFMLSLLGLSFHRTHLMSALLCLESMMLSLFIMLSLWPITTQTPSFTPMpIILLTFSACEAGTGLALLVATTRTH 85

                        90
                ....*....|
gi 5881417   81 GSDLLKSFNL 90
Cdd:MTH00125 86 GSDHLKNLNL 95
ND4L MTH00067
NADH dehydrogenase subunit 4L; Provisional
 3-90 3.11e-15

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177139  Cd Length: 98  Bit Score: 64.62  E-value: 3.11e-15
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    3 IMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSIS-GLHYPLMIALVLLTFSACEASSGLALLVLISRSHG 81
Cdd:MTH00067  7 TFYSAFLLGLMGLAFHRTHLLSALLCLEGMMLSLFIALSLWSTQfESLSYFSLPMFMLTFSACEASTGLALMVATTRTHG 86


                ....*....
gi 5881417   82 SDLLKSFNL 90
Cdd:MTH00067 87 TDHLKNLNL 95
ND4L MTH00107
NADH dehydrogenase subunit 4L; Provisional
 4-90 4.41e-11

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177169  Cd Length: 98  Bit Score: 54.17  E-value: 4.41e-11
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    4 MILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLgLGMVSISGLHYPL--MIALVLLTFSACEASSGLALLVLISRSHG 81
Cdd:MTH00107  8 IMLAFTISLLGLLMYRSHLMSSLLCLEGMMLSLFI-MATLTILNTHFTLasMMPIILLVFAACEAAVGLALLVMVSNTYG 86


                ....*....
gi 5881417   82 SDLLKSFNL 90
Cdd:MTH00107 87 TDYVQNLNL 95
ND4L MTH00043
NADH dehydrogenase subunit 4L; Validated
 2-90 8.07e-10

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 214410  Cd Length: 98  Bit Score: 50.69  E-value: 8.07e-10
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    2 LIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSIS-GLHYPLMIALVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00043  6 IIILSSFFLGLLGILINRLHLLSILLCLELLLISLFLNISIWSLNyGNFSNLSFSLLLLTLSACEASIGLSLMVLLSRNH 85

                        90
                ....*....|
gi 5881417   81 GSDLLKSFNL 90
Cdd:MTH00043 86 NSDLVASLNL 95
ND4L MTH00149
NADH dehydrogenase subunit 4L; Provisional
 1-91 1.43e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 214434  Cd Length: 97  Bit Score: 50.23  E-value: 1.43e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    1 MLIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLgMVSISGLHYPLMIALVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00149  6 LLLSLFGFLMGVFALLFQYKHLLSILLSLEALMLSLLVMM-FSSSGLISFSSYLFLIILTFGACEASLGLSLLVSLIRLH 84

                        90
                ....*....|.
gi 5881417   81 GSDLLKSFNLS 91
Cdd:MTH00149 85 GNDYVSSLSSL 95
ND4L MTH00188
NADH dehydrogenase subunit 4L; Provisional
 1-91 2.96e-09

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177237  Cd Length: 97  Bit Score: 49.20  E-value: 2.96e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    1 MLIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLgLGMVSISGLHYPLMIALVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00188  6 ILVILLFVVLGLFTFLLNRKHLLMLLLSLEAIMLSLFW-FLLVGLSYMEKELYLSLVLLTFAACEASVGLALLVSLIRSH 84

                        90
                ....*....|.
gi 5881417   81 GSDLLKSFNLS 91
Cdd:MTH00188 85 GSDYVSSLNLI 95
ND4L MTH00013
NADH dehydrogenase subunit 4L; Validated
 1-87 3.67e-08

NADH dehydrogenase subunit 4L; Validated


Pssm-ID: 133655  Cd Length: 97  Bit Score: 46.67  E-value: 3.67e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    1 MLIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLGMVSISGLHYPLMIALVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00013  5 LFILSISPFISMFNLSLQRKHLLMSLLSLEAMILSLALFIPLSLMFANQVNGMLAIVLLTFGACEASLGLSLLVLMTRSY 84


                ....*..
gi 5881417   81 GSDLLKS 87
Cdd:MTH00013 85 GNDMLKS 91
ND4L MTH00162
NADH dehydrogenase subunit 4L; Provisional
 1-87 7.08e-08

NADH dehydrogenase subunit 4L; Provisional


Pssm-ID: 177218  Cd Length: 89  Bit Score: 45.53  E-value: 7.08e-08
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417    1 MLIMILIFLIALLGLGLSQTHLLSVLLCLEMMMVSLYLGLgMVSISGLHYPLMIALVLLTFSACEASSGLALLVLISRSH 80
Cdd:MTH00162  4 LLIFLFMFFSGLLVFLSKRKHLLLMLLSLEFMVLSLFFLL-FLYLSFFNYELYFLLFFLTFSVCEGALGLSILVSMIRSH 82


                ....*..
gi 5881417   81 GSDLLKS 87
Cdd:MTH00162 83 GNDYFSS 89
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
1-90 2.24e-07

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 44.48  E-value: 2.24e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417     1 MLIMILIFLIALLGLgLSQTHLLSVLLCLEMMMVSLYLGLGMVSIS-GLHYPLMIALVLLTFSACEASSGLALLVLISRS 79
Cdd:pfam00420  3 LLLSGLLFLIGLYGL-LLRRNLLRVLLSLELMLNAVNLALVLFGRLtADPLPQALILTAIVIAAAEAAVGLALLVRIYRT 81

                         90
                 ....*....|.
gi 5881417    80 HGSDLLKSFNL 90
Cdd:pfam00420 82 HGTDDVDSLNL 92
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-90 8.23e-03

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 32.34  E-value: 8.23e-03
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 5881417   1 MLIMILIFLIALLGLgLSQTHLLSVLLCLEMMMVSLylGLGMVSISGLHYPL---MIALVLLTFSACEASSGLALLVLIS 77
Cdd:COG0713  7 LILAAILFAIGLYGV-LTRRNLIVVLMSIELMLNAV--NLNLVAFSRYLGDLdgqVFALFVIAVAAAEVAVGLAIIVALY 83

                       90
               ....*....|...
gi 5881417  78 RSHGSDLLKSFNL 90
Cdd:COG0713 84 RNRGTIDVDDLNE 96
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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