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Conserved domains on  [gi|7106295|ref|NP_031895|]
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dnaJ homolog subfamily C member 1 precursor [Mus musculus]

Protein Classification

DnaJ and SANT domain-containing protein( domain architecture ID 10446272)

DnaJ and SANT domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 61-122 1.04e-23

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


:

Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 94.08  E-value: 1.04e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295     61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKN-KDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNpGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 494-541 1.85e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


:

Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.57  E-value: 1.85e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 7106295  494 AWTQSQQKLLELALQQYPKGasdRWDKIAKCVPSKSKEDCIARYKLLV 541
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
PTZ00121 super family cl31754
MAEBL; Provisional
 315-536 1.93e-03

MAEBL; Provisional


The actual alignment was detected with superfamily member PTZ00121:

Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    315 ENRKRTQKRQAPEWTEEDLSQLTRSMVKFPGGTPGRWDKIAHELGRSVTDVTTKAKELKDSVTSSPGMTRLSElKSNGQN 394
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK-KEAEEK 1646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    395 SRPIKIATALPDDIITQREDSAGAMED----EEHEAAEgEQESATTEARPRRRKSARAAEAVTRVEPEEKLRGKRQKDFD 470
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDkkkaEEAKKAE-EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    471 isEQNDSSDEEKQRK--ERTRAAEEAWTQSQQ--KLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIAR 536
Cdd:PTZ00121 1726 --EENKIKAEEAKKEaeEDKKKAEEAKKDEEEkkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 61-122 1.04e-23

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 94.08  E-value: 1.04e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295     61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKN-KDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNpGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 62-122 6.87e-21

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 94.20  E-value: 6.87e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7106295     62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:TIGR02349   2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 61-179 2.94e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 84.37  E-value: 2.94e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYDDVLINGLPDWRQPVFYY 139
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPgDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATELAES 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 7106295  140 RRVRKMSNAELALLLFIILTVGHYAVVWSIYLEKQLDELL 179
Cdd:COG0484  81 AAAEAAAAEAKEEAAEAGASEYEAIAEEASQLRLASLLLL 120
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 61-122 3.39e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 89.52  E-value: 3.39e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 61-114 7.11e-18

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 77.59  E-value: 7.11e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD-ENAETQFRQLVAIYEVLKD 114
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDdPEAEEKFKEINEAYEVLSD 55
DnaJ smart00271
DnaJ molecular chaperone homology domain;
61-117 3.95e-17

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 75.35  E-value: 3.95e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 7106295      61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD--ENAETQFRQLVAIYEVLKDDER 117
Cdd:smart00271   2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGdkEEAEEKFKEINEAYEVLSDPEK 60
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
61-122 3.60e-16

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 81.02  E-value: 3.60e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAAEIFAEINEAYEVLSNPEKRANYD 67
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 494-541 1.85e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.57  E-value: 1.85e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 7106295  494 AWTQSQQKLLELALQQYPKGasdRWDKIAKCVPSKSKEDCIARYKLLV 541
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
493-542 1.82e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 44.91  E-value: 1.82e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 7106295     493 EAWTQSQQKLLELALQQYPKGasdRWDKIAKCVPSKSKEDCIARYKLLVE 542
Cdd:smart00717   2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 492-537 3.44e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 41.34  E-value: 3.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 7106295    492 EEAWTQSQQKLLELALQQYPKgasdRWDKIAKCVPSKSKEDCIARY 537
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNRW 42
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 473-537 4.45e-04

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 42.95  E-value: 4.45e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7106295  473 EQNDSSDEEKQRKERTRAAEEAWT-QSQQKLLElALQQYpkgaSDRWDKIAKCVPSKSKEDCIARY 537
Cdd:COG5259 260 PSEFTSSDFKPVTISLLIRDKNWSrQELLLLLE-GIEMY----GDDWDKVARHVGTKTKEQCILHF 320
PTZ00121 PTZ00121
MAEBL; Provisional
 315-536 1.93e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    315 ENRKRTQKRQAPEWTEEDLSQLTRSMVKFPGGTPGRWDKIAHELGRSVTDVTTKAKELKDSVTSSPGMTRLSElKSNGQN 394
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK-KEAEEK 1646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    395 SRPIKIATALPDDIITQREDSAGAMED----EEHEAAEgEQESATTEARPRRRKSARAAEAVTRVEPEEKLRGKRQKDFD 470
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDkkkaEEAKKAE-EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    471 isEQNDSSDEEKQRK--ERTRAAEEAWTQSQQ--KLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIAR 536
Cdd:PTZ00121 1726 --EENKIKAEEAKKEaeEDKKKAEEAKKDEEEkkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
eIF3_subunit pfam08597
Translation initiation factor eIF3 subunit; This is a family of proteins which are subunits of ...
 414-493 3.24e-03

Translation initiation factor eIF3 subunit; This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein Swiss:Q05775 has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.


Pssm-ID: 462530  Cd Length: 239  Bit Score: 39.58  E-value: 3.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    414 DSAGAMEDEEHEAAEGEQESATTEARPRRRKSARAAEavtrvepeeKLRGKRQKDFDISEQNDSSDEEKQRKERTRAAEE 493
Cdd:pfam08597  35 DSWDAEEEEEEEKEKAAKAAAAKAKKKKKSKKQKIAE---------KEAERKAEEEAEEEEELTPEDEAARKLRLRKAEE 105
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 327-373 7.25e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.47  E-value: 7.25e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 7106295  327 EWTEEDLSQLTRSMVKFPggtPGRWDKIAHELG-RSVTDVTTKAKELK 373
Cdd:cd00167   1 PWTEEEDELLLEAVKKYG---KNNWEKIAKELPgRTPKQCRERWRNLL 45
 
Name Accession Description Interval E-value
DnaJ pfam00226
DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is ...
 61-122 1.04e-23

DnaJ domain; DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature.


Pssm-ID: 395170 [Multi-domain]  Cd Length: 63  Bit Score: 94.08  E-value: 1.04e-23
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295     61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKN-KDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:pfam00226   1 DYYEILGVSPDASDEEIKKAYRKLALKYHPDKNpGDPEAEEKFKEINEAYEVLSDPEKRAIYD 63
DnaJ_bact TIGR02349
chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the ...
 62-122 6.87e-21

chaperone protein DnaJ; This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.


Pssm-ID: 274090 [Multi-domain]  Cd Length: 354  Bit Score: 94.20  E-value: 6.87e-21
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7106295     62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:TIGR02349   2 YYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62
DnaJ COG0484
DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational ...
 61-179 2.94e-19

DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440252 [Multi-domain]  Cd Length: 139  Bit Score: 84.37  E-value: 2.94e-19
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYDDVLINGLPDWRQPVFYY 139
Cdd:COG0484   1 DYYEILGVSRDASAEEIKKAYRKLAKKYHPDRNPgDPEAEEKFKEINEAYEVLSDPEKRAAYDRFGHAAELLLATELAES 80

                        90       100       110       120
                ....*....|....*....|....*....|....*....|
gi 7106295  140 RRVRKMSNAELALLLFIILTVGHYAVVWSIYLEKQLDELL 179
Cdd:COG0484  81 AAAEAAAAEAKEEAAEAGASEYEAIAEEASQLRLASLLLL 120
PRK14298 PRK14298
chaperone protein DnaJ; Provisional
 61-122 3.39e-19

chaperone protein DnaJ; Provisional


Pssm-ID: 184612 [Multi-domain]  Cd Length: 377  Bit Score: 89.52  E-value: 3.39e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14298   6 DYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYD 67
PRK14280 PRK14280
molecular chaperone DnaJ;
61-122 9.52e-19

molecular chaperone DnaJ;


Pssm-ID: 237656 [Multi-domain]  Cd Length: 376  Bit Score: 88.24  E-value: 9.52e-19
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14280   5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66
PRK10767 PRK10767
chaperone protein DnaJ; Provisional
 59-122 1.32e-18

chaperone protein DnaJ; Provisional


Pssm-ID: 236757 [Multi-domain]  Cd Length: 371  Bit Score: 87.51  E-value: 1.32e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7106295    59 QLNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK10767   3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPgDKEAEEKFKEIKEAYEVLSDPQKRAAYD 67
DnaJ cd06257
DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and ...
 61-114 7.11e-18

DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.


Pssm-ID: 99751 [Multi-domain]  Cd Length: 55  Bit Score: 77.59  E-value: 7.11e-18
                        10        20        30        40        50
                ....*....|....*....|....*....|....*....|....*....|....*
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD-ENAETQFRQLVAIYEVLKD 114
Cdd:cd06257   1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDdPEAEEKFKEINEAYEVLSD 55
PRK14283 PRK14283
chaperone protein DnaJ; Provisional
 61-122 1.05e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 184604 [Multi-domain]  Cd Length: 378  Bit Score: 84.88  E-value: 1.05e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14283   6 DYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67
DnaJ smart00271
DnaJ molecular chaperone homology domain;
61-117 3.95e-17

DnaJ molecular chaperone homology domain;


Pssm-ID: 197617 [Multi-domain]  Cd Length: 60  Bit Score: 75.35  E-value: 3.95e-17
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 7106295      61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD--ENAETQFRQLVAIYEVLKDDER 117
Cdd:smart00271   2 DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGdkEEAEEKFKEINEAYEVLSDPEK 60
PRK14276 PRK14276
chaperone protein DnaJ; Provisional
 59-122 7.45e-17

chaperone protein DnaJ; Provisional


Pssm-ID: 237653 [Multi-domain]  Cd Length: 380  Bit Score: 82.44  E-value: 7.45e-17
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7106295    59 QLNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14276   3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYD 66
PRK14301 PRK14301
chaperone protein DnaJ; Provisional
 58-122 1.38e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237668 [Multi-domain]  Cd Length: 373  Bit Score: 81.71  E-value: 1.38e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7106295    58 VQLNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDE-NAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14301   2 SQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNpEAEQKFKEAAEAYEVLRDAEKRARYD 67
PRK14293 PRK14293
molecular chaperone DnaJ;
61-122 2.48e-16

molecular chaperone DnaJ;


Pssm-ID: 237663 [Multi-domain]  Cd Length: 374  Bit Score: 80.80  E-value: 2.48e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14293   4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYD 65
PRK14281 PRK14281
chaperone protein DnaJ; Provisional
 61-122 3.03e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237657 [Multi-domain]  Cd Length: 397  Bit Score: 80.62  E-value: 3.03e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD-ENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14281   4 DYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDnKEAEEHFKEVNEAYEVLSNDDKRRRYD 66
PRK14292 PRK14292
chaperone protein DnaJ; Provisional
 60-122 3.21e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237662 [Multi-domain]  Cd Length: 371  Bit Score: 80.32  E-value: 3.21e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    60 LNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14292   2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64
PRK14278 PRK14278
chaperone protein DnaJ; Provisional
 61-122 3.50e-16

chaperone protein DnaJ; Provisional


Pssm-ID: 237654 [Multi-domain]  Cd Length: 378  Bit Score: 80.48  E-value: 3.50e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14278   4 DYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65
terminal_TopJ NF037946
terminal organelle assembly protein TopJ;
61-122 3.60e-16

terminal organelle assembly protein TopJ;


Pssm-ID: 468284 [Multi-domain]  Cd Length: 440  Bit Score: 81.02  E-value: 3.60e-16
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:NF037946   6 DYYEVLGVDRDADDQEIKKAFRKLAKKYHPDRNKAPDAAEIFAEINEAYEVLSNPEKRANYD 67
SEC63 COG5407
Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular ...
 61-120 4.59e-16

Preprotein translocase subunit Sec63 [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 444165 [Multi-domain]  Cd Length: 61  Bit Score: 72.34  E-value: 4.59e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDE-NAETQFRQLVAIYEVLKDDERRQR 120
Cdd:COG5407   1 DPYEVLGVAKTASADEIKKAYRKLAKKYHPDRNKGDpKAEERFKEINEAYELLSDAEKRAR 61
CbpA COG2214
Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];
61-122 7.74e-16

Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription];


Pssm-ID: 441816 [Multi-domain]  Cd Length: 91  Bit Score: 72.83  E-value: 7.74e-16
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDEN--AETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:COG2214   6 DHYAVLGVPPDASLEEIRQAYRRLAKLLHPDRGGELKalAEELFQRLNEAYEVLSDPERRAEYD 69
PRK14295 PRK14295
molecular chaperone DnaJ;
53-123 1.15e-15

molecular chaperone DnaJ;


Pssm-ID: 237665 [Multi-domain]  Cd Length: 389  Bit Score: 79.12  E-value: 1.15e-15
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    53 DLVEEvqlNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYDD 123
Cdd:PRK14295   5 DYIEK---DYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKgDAKAEERFKEISEAYDVLSDEKKRKEYDE 73
PRK14294 PRK14294
chaperone protein DnaJ; Provisional
 62-122 5.70e-15

chaperone protein DnaJ; Provisional


Pssm-ID: 237664 [Multi-domain]  Cd Length: 366  Bit Score: 76.73  E-value: 5.70e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14294   6 YYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPgDKEAEELFKEAAEAYEVLSDPKKRGIYD 67
PRK14297 PRK14297
molecular chaperone DnaJ;
61-122 7.55e-15

molecular chaperone DnaJ;


Pssm-ID: 184611 [Multi-domain]  Cd Length: 380  Bit Score: 76.36  E-value: 7.55e-15
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14297   5 DYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKgNKEAEEKFKEINEAYQVLSDPQKKAQYD 67
PRK14286 PRK14286
chaperone protein DnaJ; Provisional
 62-122 1.05e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172774 [Multi-domain]  Cd Length: 372  Bit Score: 75.80  E-value: 1.05e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14286   6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKgNKESEEKFKEATEAYEILRDPKKRQAYD 67
PRK14284 PRK14284
chaperone protein DnaJ; Provisional
 60-122 1.26e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 237658 [Multi-domain]  Cd Length: 391  Bit Score: 75.65  E-value: 1.26e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7106295    60 LNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14284   1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPgDAEAEKRFKEVSEAYEVLSDAQKRESYD 64
PRK14279 PRK14279
molecular chaperone DnaJ;
56-123 1.36e-14

molecular chaperone DnaJ;


Pssm-ID: 237655 [Multi-domain]  Cd Length: 392  Bit Score: 75.54  E-value: 1.36e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 7106295    56 EEVQLNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYDD 123
Cdd:PRK14279   5 EWVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPgDPAAEERFKAVSEAHDVLSDPAKRKEYDE 73
PRK14289 PRK14289
molecular chaperone DnaJ;
61-122 3.90e-14

molecular chaperone DnaJ;


Pssm-ID: 237660 [Multi-domain]  Cd Length: 386  Bit Score: 74.10  E-value: 3.90e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14289   6 DYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPgDKEAEEKFKEAAEAYDVLSDPDKRSRYD 68
PRK14285 PRK14285
chaperone protein DnaJ; Provisional
 61-122 5.95e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172773 [Multi-domain]  Cd Length: 365  Bit Score: 73.49  E-value: 5.95e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD-ENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14285   4 DYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGnKEAESIFKEATEAYEVLIDDNKRAQYD 66
PRK14277 PRK14277
chaperone protein DnaJ; Provisional
 61-122 6.19e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 184599 [Multi-domain]  Cd Length: 386  Bit Score: 73.68  E-value: 6.19e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14277   6 DYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPgDKEAEQKFKEINEAYEILSDPQKRAQYD 68
PRK14300 PRK14300
chaperone protein DnaJ; Provisional
 61-122 6.74e-14

chaperone protein DnaJ; Provisional


Pssm-ID: 172788 [Multi-domain]  Cd Length: 372  Bit Score: 73.51  E-value: 6.74e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14300   4 DYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65
PRK14291 PRK14291
chaperone protein DnaJ; Provisional
 61-122 1.10e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237661 [Multi-domain]  Cd Length: 382  Bit Score: 72.88  E-value: 1.10e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14291   4 DYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65
PRK14287 PRK14287
chaperone protein DnaJ; Provisional
 61-122 2.00e-13

chaperone protein DnaJ; Provisional


Pssm-ID: 237659 [Multi-domain]  Cd Length: 371  Bit Score: 71.96  E-value: 2.00e-13
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14287   5 DYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66
PRK14299 PRK14299
chaperone protein DnaJ; Provisional
 61-122 1.52e-12

chaperone protein DnaJ; Provisional


Pssm-ID: 237667 [Multi-domain]  Cd Length: 291  Bit Score: 68.43  E-value: 1.52e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14299   5 DYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66
PTZ00037 PTZ00037
DnaJ_C chaperone protein; Provisional
 62-135 7.29e-12

DnaJ_C chaperone protein; Provisional


Pssm-ID: 240236 [Multi-domain]  Cd Length: 421  Bit Score: 67.54  E-value: 7.29e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 7106295    62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENaetQFRQLVAIYEVLKDDERRQRYDDVLINGLPDWRQP 135
Cdd:PTZ00037  30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPE---KFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGEQP 100
PRK10266 PRK10266
curved DNA-binding protein;
61-122 8.16e-12

curved DNA-binding protein;


Pssm-ID: 182347 [Multi-domain]  Cd Length: 306  Bit Score: 66.38  E-value: 8.16e-12
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK10266   5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66
PRK14290 PRK14290
chaperone protein DnaJ; Provisional
 61-123 3.61e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 172778 [Multi-domain]  Cd Length: 365  Bit Score: 64.95  E-value: 3.61e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKD--ENAETQFRQLVAIYEVLKDDERRQRYDD 123
Cdd:PRK14290   4 DYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGnkAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68
PRK14282 PRK14282
chaperone protein DnaJ; Provisional
 61-122 5.22e-11

chaperone protein DnaJ; Provisional


Pssm-ID: 184603 [Multi-domain]  Cd Length: 369  Bit Score: 64.43  E-value: 5.22e-11
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDK---NKDEnAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14282   5 DYYEILGVSRNATQEEIKRAYKRLVKEWHPDRhpeNRKE-AEQKFKEIQEAYEVLSDPQKRAMYD 68
PRK14296 PRK14296
chaperone protein DnaJ; Provisional
 61-122 1.07e-10

chaperone protein DnaJ; Provisional


Pssm-ID: 237666 [Multi-domain]  Cd Length: 372  Bit Score: 63.43  E-value: 1.07e-10
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 7106295    61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYD 122
Cdd:PRK14296   5 DYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66
PRK14288 PRK14288
molecular chaperone DnaJ;
58-129 3.43e-08

molecular chaperone DnaJ;


Pssm-ID: 172776 [Multi-domain]  Cd Length: 369  Bit Score: 55.85  E-value: 3.43e-08
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 7106295    58 VQLNFYEFLGVQQDASSADIRKAYRKLSLTLHPDKNK-DENAETQFRQLVAIYEVLKDDERRQRYDDVLINGL 129
Cdd:PRK14288   1 MELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAgDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGL 73
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 494-541 1.85e-07

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 47.57  E-value: 1.85e-07
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 7106295  494 AWTQSQQKLLELALQQYPKGasdRWDKIAKCVPSKSKEDCIARYKLLV 541
Cdd:cd00167   1 PWTEEEDELLLEAVKKYGKN---NWEKIAKELPGRTPKQCRERWRNLL 45
DjlA COG1076
DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];
61-92 9.25e-07

DnaJ domain-containing protein [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440694 [Multi-domain]  Cd Length: 75  Bit Score: 46.33  E-value: 9.25e-07
                        10        20        30
                ....*....|....*....|....*....|..
gi 7106295   61 NFYEFLGVQQDASSADIRKAYRKLSLTLHPDK 92
Cdd:COG1076   5 DAFELLGLPPDADDAELKRAYRKLQREHHPDR 36
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
493-542 1.82e-06

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 44.91  E-value: 1.82e-06
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 7106295     493 EAWTQSQQKLLELALQQYPKGasdRWDKIAKCVPSKSKEDCIARYKLLVE 542
Cdd:smart00717   2 GEWTEEEDELLIELVKKYGKN---NWEKIAKELPGRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 492-537 3.44e-05

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 41.34  E-value: 3.44e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 7106295    492 EEAWTQSQQKLLELALQQYPKgasdRWDKIAKCVPSKSKEDCIARY 537
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLGN----RWKKIAKLLPGRTDNQCKNRW 42
PTZ00341 PTZ00341
Ring-infected erythrocyte surface antigen; Provisional
 62-139 2.67e-04

Ring-infected erythrocyte surface antigen; Provisional


Pssm-ID: 173534 [Multi-domain]  Cd Length: 1136  Bit Score: 44.01  E-value: 2.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295     62 FYEFLGVQQDASSADIRKAYRKLSLTLHPDKNKDENAETQFRQLVAIYEVLKDDERRQRYDDVLINGLP--DWRQPVFYY 139
Cdd:PTZ00341  575 FYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIKgvNFIHPSIFY 654
RSC8 COG5259
RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / ...
 473-537 4.45e-04

RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription];


Pssm-ID: 227584 [Multi-domain]  Cd Length: 531  Bit Score: 42.95  E-value: 4.45e-04
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 7106295  473 EQNDSSDEEKQRKERTRAAEEAWT-QSQQKLLElALQQYpkgaSDRWDKIAKCVPSKSKEDCIARY 537
Cdd:COG5259 260 PSEFTSSDFKPVTISLLIRDKNWSrQELLLLLE-GIEMY----GDDWDKVARHVGTKTKEQCILHF 320
djlA PRK09430
co-chaperone DjlA;
63-92 1.03e-03

co-chaperone DjlA;


Pssm-ID: 236512 [Multi-domain]  Cd Length: 267  Bit Score: 40.95  E-value: 1.03e-03
                         10        20        30
                 ....*....|....*....|....*....|
gi 7106295    63 YEFLGVQQDASSADIRKAYRKLSLTLHPDK 92
Cdd:PRK09430 203 YKVLGVSESDDDQEIKRAYRKLMSEHHPDK 232
PTZ00121 PTZ00121
MAEBL; Provisional
 315-536 1.93e-03

MAEBL; Provisional


Pssm-ID: 173412 [Multi-domain]  Cd Length: 2084  Bit Score: 41.28  E-value: 1.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    315 ENRKRTQKRQAPEWTEEDLSQLTRSMVKFPGGTPGRWDKIAHELGRSVTDVTTKAKELKDSVTSSPGMTRLSElKSNGQN 394
Cdd:PTZ00121 1568 EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK-KEAEEK 1646

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    395 SRPIKIATALPDDIITQREDSAGAMED----EEHEAAEgEQESATTEARPRRRKSARAAEAVTRVEPEEKLRGKRQKDFD 470
Cdd:PTZ00121 1647 KKAEELKKAEEENKIKAAEEAKKAEEDkkkaEEAKKAE-EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    471 isEQNDSSDEEKQRK--ERTRAAEEAWTQSQQ--KLLELALQQYPKGASDRWDKIAKCVPSKSKEDCIAR 536
Cdd:PTZ00121 1726 --EENKIKAEEAKKEaeEDKKKAEEAKKDEEEkkKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
PHA02624 PHA02624
large T antigen; Provisional
 75-134 2.72e-03

large T antigen; Provisional


Pssm-ID: 222912 [Multi-domain]  Cd Length: 647  Bit Score: 40.35  E-value: 2.72e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 7106295    75 ADIRKAYRKLSLTLHPDKNKDENaetQFRQLVAIYEVLKDDERRQR-------YDDVLINGLPDWRQ 134
Cdd:PHA02624  28 PLMRKAYLRKCKEYHPDKGGDEE---KMKRLNSLYKKLQEGVKSARqsfgtqdSSEIPTYGTPEWEQ 91
eIF3_subunit pfam08597
Translation initiation factor eIF3 subunit; This is a family of proteins which are subunits of ...
 414-493 3.24e-03

Translation initiation factor eIF3 subunit; This is a family of proteins which are subunits of the eukaryotic translation initiation factor 3 (eIF3). In yeast it is called Hcr1. The Saccharomyces cerevisiae protein Swiss:Q05775 has been shown to be required for processing of 20S pre-rRNA and binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.


Pssm-ID: 462530  Cd Length: 239  Bit Score: 39.58  E-value: 3.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7106295    414 DSAGAMEDEEHEAAEGEQESATTEARPRRRKSARAAEavtrvepeeKLRGKRQKDFDISEQNDSSDEEKQRKERTRAAEE 493
Cdd:pfam08597  35 DSWDAEEEEEEEKEKAAKAAAAKAKKKKKSKKQKIAE---------KEAERKAEEEAEEEEELTPEDEAARKLRLRKAEE 105
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 327-373 7.25e-03

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 34.47  E-value: 7.25e-03
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*...
gi 7106295  327 EWTEEDLSQLTRSMVKFPggtPGRWDKIAHELG-RSVTDVTTKAKELK 373
Cdd:cd00167   1 PWTEEEDELLLEAVKKYG---KNNWEKIAKELPgRTPKQCRERWRNLL 45
PHA03102 PHA03102
Small T antigen; Reviewed
 66-123 8.94e-03

Small T antigen; Reviewed


Pssm-ID: 222986 [Multi-domain]  Cd Length: 153  Bit Score: 36.96  E-value: 8.94e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 7106295    66 LGVQQDASSADIRKAYRKLSLTLHPDKNKDENaetQFRQLVAIYEVLKDDERRQRYDD 123
Cdd:PHA03102  13 LPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEE---KMKELNTLYKKFRESVKSLRDLD 67
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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