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Conserved domains on  [gi|6679989|ref|NP_032139|]
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rho GDP-dissociation inhibitor 3 [Mus musculus]

Protein Classification

rho GDP-dissociation inhibitor( domain architecture ID 10489308)

rho GDP-dissociation inhibitor (Rho GDI) regulates the GDP/GTP exchange reaction of the rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Rho_GDI super family cl03454
RHO protein GDP dissociation inhibitor;
42-219 6.72e-67

RHO protein GDP dissociation inhibitor;


The actual alignment was detected with superfamily member pfam02115:

Pssm-ID: 460449  Cd Length: 191  Bit Score: 204.39  E-value: 6.72e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989     42 DEIVPeYQAPGKKSMLAIWQLDPGDVSLVKYKQALLGPLPPIMDPSLPNVQVTRLTLLTEQAPG-PIIMDLTGDLDALKN 120
Cdd:pfam02115  11 EDSVN-YKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVADEPNEPEVVILSLTILSPGRPDiVLPLPLTGDLEFKKK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989    121 QVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRS 200
Cdd:pfam02115  90 PWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFARGSYSAKS 169

                         170
                  ....*....|....*....
gi 6679989    201 LFTDDDRLNHLSWEWHLHV 219
Cdd:pfam02115 170 KFVDDDKKCHLEWNWTFEI 188
 
Name Accession Description Interval E-value
Rho_GDI pfam02115
RHO protein GDP dissociation inhibitor;
42-219 6.72e-67

RHO protein GDP dissociation inhibitor;


Pssm-ID: 460449  Cd Length: 191  Bit Score: 204.39  E-value: 6.72e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989     42 DEIVPeYQAPGKKSMLAIWQLDPGDVSLVKYKQALLGPLPPIMDPSLPNVQVTRLTLLTEQAPG-PIIMDLTGDLDALKN 120
Cdd:pfam02115  11 EDSVN-YKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVADEPNEPEVVILSLTILSPGRPDiVLPLPLTGDLEFKKK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989    121 QVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRS 200
Cdd:pfam02115  90 PWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFARGSYSAKS 169

                         170
                  ....*....|....*....
gi 6679989    201 LFTDDDRLNHLSWEWHLHV 219
Cdd:pfam02115 170 KFVDDDKKCHLEWNWTFEI 188
 
Name Accession Description Interval E-value
Rho_GDI pfam02115
RHO protein GDP dissociation inhibitor;
42-219 6.72e-67

RHO protein GDP dissociation inhibitor;


Pssm-ID: 460449  Cd Length: 191  Bit Score: 204.39  E-value: 6.72e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989     42 DEIVPeYQAPGKKSMLAIWQLDPGDVSLVKYKQALLGPLPPIMDPSLPNVQVTRLTLLTEQAPG-PIIMDLTGDLDALKN 120
Cdd:pfam02115  11 EDSVN-YKLGPQKSLKEQLELDKDDESLRRWKEQLLGAVDVADEPNEPEVVILSLTILSPGRPDiVLPLPLTGDLEFKKK 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6679989    121 QVFVLKEGIEYKVKITFKVNKEIVSGLKCLHHTYRRGLRVDKAIFMVGSYGPRAQEYEFVTSVEEAPRGALARGLYVVRS 200
Cdd:pfam02115  90 PWFTLKEGSEYRLKISFKVSNNIVSGLKYVQTVWKTGVKVDKTKEMLGSYSPQEEPYTYTTPEEEAPSGMFARGSYSAKS 169

                         170
                  ....*....|....*....
gi 6679989    201 LFTDDDRLNHLSWEWHLHV 219
Cdd:pfam02115 170 KFVDDDKKCHLEWNWTFEI 188
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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