|
Name |
Accession |
Description |
Interval |
E-value |
| MCM |
smart00350 |
minichromosome maintenance proteins; |
133-649 |
0e+00 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 764.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 133 SPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNIaMRPGLEG---YALPRKCNMDQagrpkcpl 209
Cdd:smart00350 1 KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPE-IQSGRETeptVCPPRECQSPT-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 210 dPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIK--KFGLNPSKGRDRVGV 287
Cdd:smart00350 72 -PFSLNHERSTFIDFQKIKLQESPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVpyGFKLNTVKGLPVFAT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 288 GIRSSYIRVLGIQVDTDGSGRSFaGSVSPQEEEEFRRLAALPNIYELISKSISPSIFGGMDMKKAIACLLFGGSRKRLPD 367
Cdd:smart00350 151 YIEANHVRKLDYKRSFEDSSFSV-QSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 368 GLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEF 447
Cdd:smart00350 230 GMKIRGDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEF 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 448 DKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNE 526
Cdd:smart00350 310 DKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTpEENIDLPAPILSRFDLLFVVLDEVDE 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 527 ERDMMLAKHVMTLHV-SALTQTQAVEGEIDLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMrsgaRQHERDSDRRSS 605
Cdd:smart00350 390 ERDRELAKHVVDLHRySHPEEDEAFEPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDL----RKEDSQTESRSS 465
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 112293273 606 IPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTL 649
Cdd:smart00350 466 IPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM5 |
cd17756 |
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in ... |
334-647 |
0e+00 |
|
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350662 [Multi-domain] Cd Length: 317 Bit Score: 649.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAG 413
Cdd:cd17756 1 IISKSIAPSIYGNEDIKKAIACLLFGGSRKRLPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 414 LTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:cd17756 81 LTASVMRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKGE-DNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQA--VEGEIDLAKMKKFIAYCRARC 570
Cdd:cd17756 161 RYDDLKTPgDNIDFQTTILSRFDMIFIVKDKHDEERDITIAKHVINIHASARKASQSqeNEGEIPISKLKRYIAYCRAKC 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 571 GPRLSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17756 241 APRLSEEAAEKLSNHYVTIRKDVRQNELESDNRSSIPITVRQLEAIIRISESLAKMELSPIATEKHVEEAIRLFQVS 317
|
|
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
28-721 |
0e+00 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 596.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 28 KSQLQRRFKEFLRQYrvgtdrtgftfKYRDELKR---HYNlGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAK 104
Cdd:COG1241 2 ESDLVDKFEEFLRRY-----------KYRDEILElaqEYP-EKRSLVVDYNDLYSFDPDLADDLLENPDEVLEAAEEALR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 105 EVADEVTrprpagDELLQDIQVMLKSdaSPSSIRI--LKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNI 182
Cdd:COG1241 70 EIDLEPY------DVSLGDAHVRITN--LPETVPIrdIRSDHIGKLISVEGIVRKATEVKPKITEAAFECPRCGTETYVP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 183 AMRPGLEGyalPRKCnmDQAGRPKcpldPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNR 262
Cdd:COG1241 142 QTGEKLQE---PHEC--PGCGRQG----PFKLLPEKSEFIDAQKIRIQEPPEDLPGGQQPQSIDVILEDDLVGEVRPGDR 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 263 VTIMGIYSIKKfglnpsKGRDRVGVGIRSSYIRVLGIQVDTdgsgRSFAG-SVSPQEEEEFRRLAALPNIYELISKSISP 341
Cdd:COG1241 213 VTVTGILRIEQ------RTSGRGKSTIFDLYLEANSIEVEE----KEFEEiEITEEDEEKIKELSKDPDIYEKIIASIAP 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 342 SIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRD 421
Cdd:COG1241 283 SIYGYEEIKEAIALQLFGGVPKVLPDGSRIRGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSGKGSTAAGLTAAAVRD 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 422 -PSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG 500
Cdd:COG1241 363 dFGTGRWTLEAGALVLADGGLACIDELDKMREEDRSALHEAMEQQTISIAKAGIVATLNARCSVLAAANPKYGRFDPYEP 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 501 -EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLH-------VSALTQTQAVEGEIDLAKMKKFIAYCRARCGP 572
Cdd:COG1241 443 iAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARHILKVHragelleQEIEEETEEVKPEIDPDLLRKYIAYARRNVFP 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 573 RLSAEAAEKLKNRYIIMRSGArqherdSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAA 652
Cdd:COG1241 523 VLTEEAKDLIEDFYVDMRKKG------EDEDSPVPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDSCLKDVG 596
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 653 L---SGNL--SGVEGFTTQEDQEMLSRIE---KQLKRRFaiGSQVSEHSIVQDFTKQKYPEHAIRKVLQLMLRRGEI 721
Cdd:COG1241 597 VdpeTGKFdiDVIETGTSKSQRDKMKLIKdiiKELEEES--SGGAPIEDVIEEAEEEGIDREKAEELIEKLKRKGEI 671
|
|
| minchrom_main_MCM |
NF040949 |
minichromosome maintenance protein MCM; |
34-721 |
0e+00 |
|
minichromosome maintenance protein MCM;
Pssm-ID: 468880 [Multi-domain] Cd Length: 681 Bit Score: 595.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 34 RFKEFLRQYRvgtDRTGfTFKYRDELKRHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVadeVTRP 113
Cdd:NF040949 4 KFKEFIRTFR---DSFG-NEKYKERIFEMIAMRKRSLVVDFNDLYMFDPELADLLIEKPDEVLPAASKALKEI---VEEE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 114 RPAGDELLQDIQVMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTniAMRPGLEGYAL 193
Cdd:NF040949 77 DPEYAEEVAKFHVRFRNLPRTVPLRDLRSEYIGKLIAVEGIVTRTTPVKPRIVKAVFRCRDCGCEFE--WPEEEEESYEI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 194 ---PRKCnmdqagrPKCPLDPYF-IMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 269
Cdd:NF040949 155 vepPTVC-------PVCGKPGSFrLLQEKSKFIDWQKIVVQERPEELPPGQLPRSIEVVLEDDLVDTARPGDRVTVTGIL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 270 SIKkfglnPSKGRDRVGVGIRSSYIRVLGIQVdtdgSGRSFAG-SVSPQEEEEFRRLAALPNIYELISKSISPSIFGGMD 348
Cdd:NF040949 228 RIK-----PDSSLKKGSRPIFKNYIEANHIEV----SQKELEEvEITEEDEEKILELAKDPWIREKIIASIAPSIYGHWE 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 349 MKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFI 428
Cdd:NF040949 299 IKEAIALLLFGGVPKVLPDGTRIRGDIHVLIVGDPGTAKSQLLQYVARLAPRAVYTSGKGSTAAGLTAAVVRDKLTGEYY 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 429 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFM 507
Cdd:NF040949 379 LEAGALVLADGGVAVIDEIDKMREEDRSAIHEAMEQQTVSIAKAGIVATLNARASVLAAGNPKFGRYDPNRSvAENIDLP 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 508 PTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHvsalTQTQAVEGEIDLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYI 587
Cdd:NF040949 459 PTILSRFDLIFVIRDKPNEERDRRLARHILDVH----SGKEKVKPEIDPDLLKKYIAYARKYVRPKLTEEAKKLIEDFYV 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 588 IMRSGARQHErdsDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAAL---SGNL--SGVEG 662
Cdd:NF040949 535 EMRKSSKSSE---DPDSPIPITARQLEALIRLSEAHAKMRLKDEVTAEDAERAIRLMLAFLESVGIdveTGKIdiDTIMT 611
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 112293273 663 FTTQEDQEMLSRIEKQLKRRFAIGSQVSEHSIVQDFTKQKYPEHAIRKVLQLMLRRGEI 721
Cdd:NF040949 612 GKPKSKREKMSKIVEIIKELEEEEECVKIKELIKEAEKKGIDEEKVEELISDLKRSGEI 670
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
318-540 |
1.78e-137 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 403.45 E-value: 1.78e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 318 EEEEFRRLAALPNIYELISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKC 397
Cdd:pfam00493 1 DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGTAKSQLLKYVEKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 398 SPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTT 477
Cdd:pfam00493 81 APRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVAT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112293273 478 LNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLH 540
Cdd:pfam00493 161 LNARCSILAAANPIFGRYDPKKSiAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
71-700 |
8.09e-92 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 306.54 E-value: 8.09e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 71 EVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDELLQDI---QVMLKSDASPSSIRILKSDMMSH 147
Cdd:PTZ00111 149 EVDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSffpRARLMNKPVSDCVGNLEPSMADS 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 148 LVKIPGIIISASAVRAKATRISIQCRSchntltniAMRPGLEGYalpRKCNMDQ-----AGRPKCPL--------DPYFI 214
Cdd:PTZ00111 229 LVQFSGTVVRQTWIVPEITMACFRCRG--------QKKIGLNDY---QPCTCEHyeyviQGEVNEPLlcnecnskYTFEL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 215 MPDKCKCVDFQTLKLQELPDAVPHGEMPR----------------------HMQLYCDryLCDKVVPGNRVTIMGIYSIK 272
Cdd:PTZ00111 298 NHNMCVYSTKKIVKLLQSNSSLNNPDKDGldnsvdnsglngeiymkdneviNLNLYDD--LIDSVKTGDRVTVVGILKVT 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 273 KFGLNPskgRDRVGVGIRSSYIRVLGIQV-DTDGSGRSFAGSVSPQEEEEF--------RRLAALPNIYELISKSISPSI 343
Cdd:PTZ00111 376 PIRTST---TRRTLKSLYTYFVNVIHVKViNSTNANQPEKGLKYLGNENDFsdlqvykiLELSRNPMIYRILLDSFAPSI 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 344 FGGMDMKKAIACLLFGGSR-----KRLPDGLTR----RGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGL 414
Cdd:PTZ00111 453 KARNNVKIGLLCQLFSGNKnssdfNKSPDACYKvdnfRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGL 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 415 TASV-IRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:PTZ00111 533 TASIkFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINS 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKGE-DNIDFMPTILSRFDMIFIVKDEHNEERD----MMLAKHVMTLHVSAL---------TQTQAVEGEI----- 554
Cdd:PTZ00111 613 RYNKNKAViENINISPSLFTRFDLIYLVLDHIDQDTDqlisLSIAKDFLLPHMTGSgndedtydrSNTMHVEDESlrsek 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 555 -----DLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMRSGARQ----------HERDSDRR-------SSIPITVRQ 612
Cdd:PTZ00111 693 dynknDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQtsnldelehaQEDDDDDLyyqssgtRMIYVSSRM 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 613 LEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDaALSGNLSGVEGFtTQEDQEMLSRIEKQLKRRFAIGSQVSEH 692
Cdd:PTZ00111 773 ISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQ-SLVDPTTGKIDF-DQLHQGITTNKMQQLNQMYEQVLSVLTR 850
|
....*...
gi 112293273 693 SIVQDFTK 700
Cdd:PTZ00111 851 SSNQDSNK 858
|
|
| MCM_N |
pfam14551 |
MCM N-terminal domain; This family contains the N-terminal domain of MCM proteins. |
32-130 |
1.00e-24 |
|
MCM N-terminal domain; This family contains the N-terminal domain of MCM proteins.
Pssm-ID: 464206 [Multi-domain] Cd Length: 95 Bit Score: 98.52 E-value: 1.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 32 QRRFKEFLRQYRVGTDrtgFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVt 111
Cdd:pfam14551 1 KRKFKDFLEEFREDGD---GEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEYLPLFEEALKEVVKEL- 76
|
90
....*....|....*....
gi 112293273 112 RPRPAGDELLQDIQVMLKS 130
Cdd:pfam14551 77 SEDPDYAEEEKEFQVRFYN 95
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| MCM |
smart00350 |
minichromosome maintenance proteins; |
133-649 |
0e+00 |
|
minichromosome maintenance proteins;
Pssm-ID: 214631 [Multi-domain] Cd Length: 509 Bit Score: 764.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 133 SPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNIaMRPGLEG---YALPRKCNMDQagrpkcpl 209
Cdd:smart00350 1 KPSSIRELRADHLGKLVRISGIVTRTSGVRPKLKRASFTCEKCGATLGPE-IQSGRETeptVCPPRECQSPT-------- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 210 dPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSIK--KFGLNPSKGRDRVGV 287
Cdd:smart00350 72 -PFSLNHERSTFIDFQKIKLQESPEEVPVGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNVpyGFKLNTVKGLPVFAT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 288 GIRSSYIRVLGIQVDTDGSGRSFaGSVSPQEEEEFRRLAALPNIYELISKSISPSIFGGMDMKKAIACLLFGGSRKRLPD 367
Cdd:smart00350 151 YIEANHVRKLDYKRSFEDSSFSV-QSLSDEEEEEIRKLSKDPDIYERLARSLAPSIYGHEDIKKAILLLLFGGVHKNLPD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 368 GLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEF 447
Cdd:smart00350 230 GMKIRGDINILLCGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEAGALVLADNGVCCIDEF 309
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 448 DKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNE 526
Cdd:smart00350 310 DKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTpEENIDLPAPILSRFDLLFVVLDEVDE 389
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 527 ERDMMLAKHVMTLHV-SALTQTQAVEGEIDLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMrsgaRQHERDSDRRSS 605
Cdd:smart00350 390 ERDRELAKHVVDLHRySHPEEDEAFEPPLSQEKLRKYIAYAREKIKPKLSEEAADKLVKAYVDL----RKEDSQTESRSS 465
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 112293273 606 IPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTL 649
Cdd:smart00350 466 IPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESII 509
|
|
| MCM5 |
cd17756 |
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in ... |
334-647 |
0e+00 |
|
DNA replication licensing factor Mcm5; Mcm5 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350662 [Multi-domain] Cd Length: 317 Bit Score: 649.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAG 413
Cdd:cd17756 1 IISKSIAPSIYGNEDIKKAIACLLFGGSRKRLPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVAPIGVYTSGKGSSAAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 414 LTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:cd17756 81 LTASVMRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKGE-DNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQA--VEGEIDLAKMKKFIAYCRARC 570
Cdd:cd17756 161 RYDDLKTPgDNIDFQTTILSRFDMIFIVKDKHDEERDITIAKHVINIHASARKASQSqeNEGEIPISKLKRYIAYCRAKC 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 571 GPRLSAEAAEKLKNRYIIMRSGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17756 241 APRLSEEAAEKLSNHYVTIRKDVRQNELESDNRSSIPITVRQLEAIIRISESLAKMELSPIATEKHVEEAIRLFQVS 317
|
|
| Mcm2 |
COG1241 |
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and ... |
28-721 |
0e+00 |
|
DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family [Replication, recombination and repair];
Pssm-ID: 440854 [Multi-domain] Cd Length: 682 Bit Score: 596.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 28 KSQLQRRFKEFLRQYrvgtdrtgftfKYRDELKR---HYNlGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAK 104
Cdd:COG1241 2 ESDLVDKFEEFLRRY-----------KYRDEILElaqEYP-EKRSLVVDYNDLYSFDPDLADDLLENPDEVLEAAEEALR 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 105 EVADEVTrprpagDELLQDIQVMLKSdaSPSSIRI--LKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNI 182
Cdd:COG1241 70 EIDLEPY------DVSLGDAHVRITN--LPETVPIrdIRSDHIGKLISVEGIVRKATEVKPKITEAAFECPRCGTETYVP 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 183 AMRPGLEGyalPRKCnmDQAGRPKcpldPYFIMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNR 262
Cdd:COG1241 142 QTGEKLQE---PHEC--PGCGRQG----PFKLLPEKSEFIDAQKIRIQEPPEDLPGGQQPQSIDVILEDDLVGEVRPGDR 212
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 263 VTIMGIYSIKKfglnpsKGRDRVGVGIRSSYIRVLGIQVDTdgsgRSFAG-SVSPQEEEEFRRLAALPNIYELISKSISP 341
Cdd:COG1241 213 VTVTGILRIEQ------RTSGRGKSTIFDLYLEANSIEVEE----KEFEEiEITEEDEEKIKELSKDPDIYEKIIASIAP 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 342 SIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRD 421
Cdd:COG1241 283 SIYGYEEIKEAIALQLFGGVPKVLPDGSRIRGDIHILLVGDPGTAKSQLLRYAARLAPRGVYTSGKGSTAAGLTAAAVRD 362
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 422 -PSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG 500
Cdd:COG1241 363 dFGTGRWTLEAGALVLADGGLACIDELDKMREEDRSALHEAMEQQTISIAKAGIVATLNARCSVLAAANPKYGRFDPYEP 442
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 501 -EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLH-------VSALTQTQAVEGEIDLAKMKKFIAYCRARCGP 572
Cdd:COG1241 443 iAEQIDLPPTLLSRFDLIFVLRDKPDEERDRELARHILKVHragelleQEIEEETEEVKPEIDPDLLRKYIAYARRNVFP 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 573 RLSAEAAEKLKNRYIIMRSGArqherdSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAA 652
Cdd:COG1241 523 VLTEEAKDLIEDFYVDMRKKG------EDEDSPVPITARQLEALIRLAEASARMRLSDTVTEEDAERAIRLVDSCLKDVG 596
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 653 L---SGNL--SGVEGFTTQEDQEMLSRIE---KQLKRRFaiGSQVSEHSIVQDFTKQKYPEHAIRKVLQLMLRRGEI 721
Cdd:COG1241 597 VdpeTGKFdiDVIETGTSKSQRDKMKLIKdiiKELEEES--SGGAPIEDVIEEAEEEGIDREKAEELIEKLKRKGEI 671
|
|
| minchrom_main_MCM |
NF040949 |
minichromosome maintenance protein MCM; |
34-721 |
0e+00 |
|
minichromosome maintenance protein MCM;
Pssm-ID: 468880 [Multi-domain] Cd Length: 681 Bit Score: 595.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 34 RFKEFLRQYRvgtDRTGfTFKYRDELKRHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVadeVTRP 113
Cdd:NF040949 4 KFKEFIRTFR---DSFG-NEKYKERIFEMIAMRKRSLVVDFNDLYMFDPELADLLIEKPDEVLPAASKALKEI---VEEE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 114 RPAGDELLQDIQVMLKSDASPSSIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTniAMRPGLEGYAL 193
Cdd:NF040949 77 DPEYAEEVAKFHVRFRNLPRTVPLRDLRSEYIGKLIAVEGIVTRTTPVKPRIVKAVFRCRDCGCEFE--WPEEEEESYEI 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 194 ---PRKCnmdqagrPKCPLDPYF-IMPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIY 269
Cdd:NF040949 155 vepPTVC-------PVCGKPGSFrLLQEKSKFIDWQKIVVQERPEELPPGQLPRSIEVVLEDDLVDTARPGDRVTVTGIL 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 270 SIKkfglnPSKGRDRVGVGIRSSYIRVLGIQVdtdgSGRSFAG-SVSPQEEEEFRRLAALPNIYELISKSISPSIFGGMD 348
Cdd:NF040949 228 RIK-----PDSSLKKGSRPIFKNYIEANHIEV----SQKELEEvEITEEDEEKILELAKDPWIREKIIASIAPSIYGHWE 298
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 349 MKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGLTASVIRDPSSRNFI 428
Cdd:NF040949 299 IKEAIALLLFGGVPKVLPDGTRIRGDIHVLIVGDPGTAKSQLLQYVARLAPRAVYTSGKGSTAAGLTAAVVRDKLTGEYY 378
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 429 MEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGRWDETKG-EDNIDFM 507
Cdd:NF040949 379 LEAGALVLADGGVAVIDEIDKMREEDRSAIHEAMEQQTVSIAKAGIVATLNARASVLAAGNPKFGRYDPNRSvAENIDLP 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 508 PTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHvsalTQTQAVEGEIDLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYI 587
Cdd:NF040949 459 PTILSRFDLIFVIRDKPNEERDRRLARHILDVH----SGKEKVKPEIDPDLLKKYIAYARKYVRPKLTEEAKKLIEDFYV 534
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 588 IMRSGARQHErdsDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDAAL---SGNL--SGVEG 662
Cdd:NF040949 535 EMRKSSKSSE---DPDSPIPITARQLEALIRLSEAHAKMRLKDEVTAEDAERAIRLMLAFLESVGIdveTGKIdiDTIMT 611
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....*....
gi 112293273 663 FTTQEDQEMLSRIEKQLKRRFAIGSQVSEHSIVQDFTKQKYPEHAIRKVLQLMLRRGEI 721
Cdd:NF040949 612 GKPKSKREKMSKIVEIIKELEEEEECVKIKELIKEAEKKGIDEEKVEELISDLKRSGEI 670
|
|
| MCM |
cd17706 |
MCM helicase family; MCM helicases are a family of helicases that play an important role in ... |
334-647 |
5.79e-141 |
|
MCM helicase family; MCM helicases are a family of helicases that play an important role in replication and homologous recombination repair. The heterohexameric ring-shaped Mcm2-7 complex is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases. Mcm8 and Mcm9, form a complex required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350658 [Multi-domain] Cd Length: 311 Bit Score: 415.97 E-value: 5.79e-141
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAG 413
Cdd:cd17706 1 ILADSIAPSIYGHEDVKKAVLLQLFGGVQKILEDGTRIRGDIHILLVGDPGTAKSQILKYVLKIAPRGVYTSGKGSSGAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 414 LTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:cd17706 81 LTAAVVRDSETGEWYLEAGALVLADGGVCCIDEFDKMKELDRTALHEAMEQQTISIAKAGIVTTLNARCSILAAANPKGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQAVEGE----IDLAKMKKFIAYCRa 568
Cdd:cd17706 161 RYNPKLSpIENINLPSPLLSRFDLIFVIRDDPDEERDEELAEHIIDLHRGSDPEEQVKPEEdgipIDIELLRKYILYAR- 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112293273 569 RCGPRLSAEAAEKLKNRYIIMRsgarqheRDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17706 240 QIHPKISEEAREKLVRWYVELR-------KESERRSTIPITARQLESVIRLAEAHAKMRLSEVVTEEDVEEAIRLVRHS 311
|
|
| MCM |
pfam00493 |
MCM P-loop domain; |
318-540 |
1.78e-137 |
|
MCM P-loop domain;
Pssm-ID: 459830 [Multi-domain] Cd Length: 224 Bit Score: 403.45 E-value: 1.78e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 318 EEEEFRRLAALPNIYELISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKC 397
Cdd:pfam00493 1 DEEEIKELAKRPDIYDKLADSIAPSIYGHEDVKKAILLQLFGGVKKILPDGTRLRGDINVLLVGDPGTAKSQLLKYVEKI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 398 SPIGVYTSGKGSSAAGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTT 477
Cdd:pfam00493 81 APRAVYTSGKGSSAAGLTAAVVRDPVTGEFVLEAGALVLADGGVCCIDEFDKMNDEDRVALHEAMEQQTISIAKAGIVAT 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112293273 478 LNSRCSVLAAANSVFGRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLH 540
Cdd:pfam00493 161 LNARCSILAAANPIFGRYDPKKSiAENINLPPPLLSRFDLIFVLLDKPDEEKDERLAKHIVDLH 224
|
|
| MCM_arch |
cd17761 |
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the ... |
333-645 |
8.96e-132 |
|
archaeal MCM protein; archaeal MCM proteins form a homohexameric ring homologous to the eukaryotic Mcm2-7 helicase and also function as the replicative helicase at the replication fork
Pssm-ID: 350667 [Multi-domain] Cd Length: 308 Bit Score: 392.20 E-value: 8.96e-132
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 333 ELISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAA 412
Cdd:cd17761 1 EKIISSIAPSIYGHEDVKEAIALQLFGGVPKVLPDGTRIRGDIHILLVGDPGTAKSQLLKYVSKVAPRAVYTTGKGSTAA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 413 GLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF 492
Cdd:cd17761 81 GLTAAVVRDEGTGEWYLEAGALVLADKGIAVVDEIDKMRKEDRSALHEAMEQQTISIAKAGIVATLNARAAVLAAANPKF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 493 GRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHvsALTQTQAVEGEIDLAKMKKFIAYCRARCG 571
Cdd:cd17761 161 GRFDSYRPvAEQIDLPPTLLSRFDLIFVLKDTPNEEKDRRLANHILDTH--SGGEMREIKPEIDPDLLRKYIAYARKNVR 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112293273 572 PRLSAEAAEKLKNRYIIMRSGARQHErdsdrrSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQ 645
Cdd:cd17761 239 PVLTEEAKQLIKDFYVEMRKSGQETP------SPVPITARQLEALVRLSEASARMRLSQEVTLEDAERAIRIML 306
|
|
| MCM4 |
cd17755 |
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in ... |
334-647 |
1.13e-119 |
|
DNA replication licensing factor Mcm4; Mcm4 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350661 [Multi-domain] Cd Length: 309 Bit Score: 361.37 E-value: 1.13e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTR-RGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAA 412
Cdd:cd17755 1 RLARSIAPSIYELEDVKKGILLQLFGGTRKDFTKTGGKyRGDINILLCGDPGTSKSQLLQYVHKISPRGVYTSGKGSSAV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 413 GLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVF 492
Cdd:cd17755 81 GLTAYVTRDPDTKQLVLESGALVLSDGGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIITTLNARTSILASANPIG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 493 GRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSAlTQTQAVEGEIDLAKMKKFIAYCRARCG 571
Cdd:cd17755 161 SRYNPKLTvVENIDLPPTLLSRFDLIYLVLDKVDEKYDRRLAKHLVSLYLED-TPEHIQDEVLDVEVLTDYISYAREHIH 239
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 112293273 572 PRLSAEAAEKLKNRYIIMRSGarqherDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17755 240 PKLSEEAAQELVQAYVDMRKM------GSDARKRITATPRQLESLIRLAEAHAKMRLSNVVEAEDVEEAVRLIREA 309
|
|
| MCM6 |
cd17757 |
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in ... |
335-647 |
2.13e-119 |
|
DNA replication licensing factor Mcm6; Mcm6 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350663 [Multi-domain] Cd Length: 307 Bit Score: 360.53 E-value: 2.13e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 335 ISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGL 414
Cdd:cd17757 2 LVRSIAPSIYGHEEVKKGILLMLLGGVHKITREGISLRGDINVCIVGDPSTAKSQFLKYVEEFSPRAVYTSGKASSAAGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 415 TASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGR 494
Cdd:cd17757 82 TAAVVRDEETGDFVIEAGALMLADNGICCIDEFDKMDIKDQVAIHEAMEQQTISITKAGIQATLNARTSILAAANPVGGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 495 WDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSAltqTQAVEGEIDLAKMKKFIAYCRARCgPR 573
Cdd:cd17757 162 YDRSKSlKQNINISAPIMSRFDLFFVLLDECNEVTDYAIASHIVDLHSKR---EEAIEPPFTAEQLKRYIAYARTFK-PK 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112293273 574 LSAEAAEKLKNRYIimrsGARQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17757 238 LTKEAKDELVEQYK----ELRQDDASGSTRSSYRITVRQLESLIRLSEAIARLHCSDEVTPEHVEEAARLLKKS 307
|
|
| MCM7 |
cd17758 |
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in ... |
335-647 |
2.03e-117 |
|
DNA replication licensing factor Mcm7; Mcm7 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350664 [Multi-domain] Cd Length: 306 Bit Score: 355.18 E-value: 2.03e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 335 ISKSISPSIFGGMDMKKAIACLLFGGSRKRlPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGL 414
Cdd:cd17758 2 LAASIAPEIYGHEDVKKALLLLLVGGVDKR-GDGMKIRGDINICLMGDPGVAKSQLLKYICRIAPRSVYTTGRGSSGVGL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 415 TASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGR 494
Cdd:cd17758 81 TAAVMKDPVTGEMTLEGGALVLADQGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGITTTLNARTSILAAANPAYGR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 495 WDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSALTQTQAVEgEIDLAKMKKFIAYCRaRCGPR 573
Cdd:cd17758 161 YNPRRSpEQNINLPAALLSRFDLLFLILDKPDRDNDLRLAEHVTYVHQHNKQPDSDFE-PLDPKLLRAYIALAK-RKRPT 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 112293273 574 LSAEAAEKLKNRYIIMRSGARQHERDSDrrssipITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17758 239 VPPALADYIVQAYVEMRQEAKRSKDFTF------TTPRTLLAILRLSQALARLRLSDSVEIDDVEEALRLMEMS 306
|
|
| MCM2 |
cd17753 |
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in ... |
335-643 |
2.62e-116 |
|
DNA replication licensing factor Mcm2; Mcm2 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350659 [Multi-domain] Cd Length: 325 Bit Score: 353.29 E-value: 2.62e-116
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 335 ISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGL 414
Cdd:cd17753 2 IINSIAPSIYGHDDIKTAIALALFGGVAKNPGGKHRIRGDINVLLLGDPGTAKSQFLKYVEKTAHRAVFTTGQGASAVGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 415 TASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFGR 494
Cdd:cd17753 82 TASVRKDPVTKEWTLEGGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 495 WDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHV-------------SALTQTQAVE----GEIDL 556
Cdd:cd17753 162 YNPTLTfAQNVNLTEPILSRFDILCVVRDTVDPEEDERLAKFVVGSHVrshpendedregeEEKNQRQRPKetkvEPIPQ 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 557 AKMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMRsgarqheRDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEAD 636
Cdd:cd17753 242 ELLRKYIHYAREKVRPKLNQMDMDKVSRVYADLR-------KESMATGSLPITVRHLESIIRISEAHAKMHLREYVSEED 314
|
....*..
gi 112293273 637 VEEALRL 643
Cdd:cd17753 315 VDMAIRV 321
|
|
| MCM3 |
cd17754 |
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in ... |
334-645 |
2.04e-107 |
|
DNA replication licensing factor Mcm3; Mcm3 is a helicase that play an important role in replication. It is part of the heterohexameric ring-shaped Mcm2-7 complex, which is part of the replicative helicase that unwinds parental double-stranded DNA at a replication fork to provide single-stranded DNA templates for the replicative polymerases.
Pssm-ID: 350660 [Multi-domain] Cd Length: 299 Bit Score: 329.04 E-value: 2.04e-107
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAG 413
Cdd:cd17754 1 LLSKSLAPSIYGHEYIKKAILLMLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 414 LTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:cd17754 81 LTAAVTTDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKGE-DNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLHVSaltqtqavegeidLAKMKKFIAYCRARCGP 572
Cdd:cd17754 161 RYDVYKTPmENIGLPDSLLSRFDLLFIVLDDIDEERDRSISEHVLRMHRY-------------IKFLRKYIHYAKERIKP 227
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 112293273 573 RLSAEAAEKLKNRYIIMRSGARQherDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQ 645
Cdd:cd17754 228 KLTQEAAEYIAEEYADLRNDDNT---KTDKARTSPITARTLETLIRLATAHAKARLSKTVDKVDAEVALNLLR 297
|
|
| PTZ00111 |
PTZ00111 |
DNA replication licensing factor MCM4; Provisional |
71-700 |
8.09e-92 |
|
DNA replication licensing factor MCM4; Provisional
Pssm-ID: 173403 [Multi-domain] Cd Length: 915 Bit Score: 306.54 E-value: 8.09e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 71 EVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVTRPRPAGDELLQDI---QVMLKSDASPSSIRILKSDMMSH 147
Cdd:PTZ00111 149 EVDLMHVYSFDKVLYKLLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSffpRARLMNKPVSDCVGNLEPSMADS 228
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 148 LVKIPGIIISASAVRAKATRISIQCRSchntltniAMRPGLEGYalpRKCNMDQ-----AGRPKCPL--------DPYFI 214
Cdd:PTZ00111 229 LVQFSGTVVRQTWIVPEITMACFRCRG--------QKKIGLNDY---QPCTCEHyeyviQGEVNEPLlcnecnskYTFEL 297
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 215 MPDKCKCVDFQTLKLQELPDAVPHGEMPR----------------------HMQLYCDryLCDKVVPGNRVTIMGIYSIK 272
Cdd:PTZ00111 298 NHNMCVYSTKKIVKLLQSNSSLNNPDKDGldnsvdnsglngeiymkdneviNLNLYDD--LIDSVKTGDRVTVVGILKVT 375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 273 KFGLNPskgRDRVGVGIRSSYIRVLGIQV-DTDGSGRSFAGSVSPQEEEEF--------RRLAALPNIYELISKSISPSI 343
Cdd:PTZ00111 376 PIRTST---TRRTLKSLYTYFVNVIHVKViNSTNANQPEKGLKYLGNENDFsdlqvykiLELSRNPMIYRILLDSFAPSI 452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 344 FGGMDMKKAIACLLFGGSR-----KRLPDGLTR----RGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAGL 414
Cdd:PTZ00111 453 KARNNVKIGLLCQLFSGNKnssdfNKSPDACYKvdnfRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGL 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 415 TASV-IRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVFG 493
Cdd:PTZ00111 533 TASIkFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINS 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKGE-DNIDFMPTILSRFDMIFIVKDEHNEERD----MMLAKHVMTLHVSAL---------TQTQAVEGEI----- 554
Cdd:PTZ00111 613 RYNKNKAViENINISPSLFTRFDLIYLVLDHIDQDTDqlisLSIAKDFLLPHMTGSgndedtydrSNTMHVEDESlrsek 692
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 555 -----DLAKMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMRSGARQ----------HERDSDRR-------SSIPITVRQ 612
Cdd:PTZ00111 693 dynknDLDMLRMYIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQtsnldelehaQEDDDDDLyyqssgtRMIYVSSRM 772
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 613 LEAIVRIAEALSKMKLQPFATEADVEEALRLFQVSTLDaALSGNLSGVEGFtTQEDQEMLSRIEKQLKRRFAIGSQVSEH 692
Cdd:PTZ00111 773 ISSIIRISVSLARMRLSTVVTPADALQAVQIVKSSTFQ-SLVDPTTGKIDF-DQLHQGITTNKMQQLNQMYEQVLSVLTR 850
|
....*...
gi 112293273 693 SIVQDFTK 700
Cdd:PTZ00111 851 SSNQDSNK 858
|
|
| MCM8 |
cd17759 |
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a ... |
334-647 |
5.37e-78 |
|
DNA helicase Mcm8; Mcm8 plays an important role homologous recombination repair. It forms a complex with Mcm9 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350665 [Multi-domain] Cd Length: 289 Bit Score: 252.07 E-value: 5.37e-78
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDG--LTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSA 411
Cdd:cd17759 1 LIVNSLCPAIYGHELVKAGLLLSLFGGKQKYADDKnrIPIRGDPHVLIVGDPGLGKSQMLQAACNIAPRGVYVCGNTTTT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 412 AGLTASVIRDPSSRNFIMEGGAMVLADGGVVCIDEFDKMrEDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSV 491
Cdd:cd17759 81 SGLTVTLTKDGRSGDFALEAGALVLGDQGICGIDEFDKM-GSQHQALLEAMEQQSVSLAKAGVVCSLPARTSVIAAANPV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 492 FGRWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTLhvsaltqtqavegeidlakmKKFIAYCRARC 570
Cdd:cd17759 160 GGHYNKGKTvSENLKMGPALLSRFDLVFILLDTPSEEHDHLLSEHHQLL--------------------RKYISYARQYV 219
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 571 GPRLSAEAAEKLKNRYIIMRSgarqherDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17759 220 NPVLSKDASEALQEFYLELRK-------QNQLADSSPITTRQLESLIRLTEARARLELREEATKEDAEDVIEIMKES 289
|
|
| MCM9 |
cd17760 |
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a ... |
334-647 |
2.32e-71 |
|
DNA helicase Mcm9; Mcm9 plays an important role homologous recombination repair. It forms a complex with Mcm8 that is required for homologous recombination (HR) repair induced by DNA interstrand crosslinks (ICLs).
Pssm-ID: 350666 [Multi-domain] Cd Length: 299 Bit Score: 234.75 E-value: 2.32e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 334 LISKSISPSIFGGMDMKKAIACLLFGGSRKRLPDGLTRRGDINLLMLGDPGTAKSQLLKFVEKCSPIGVYTSGKGSSAAG 413
Cdd:cd17760 1 EILASLCPQVFGLYNVKLAVAMVLAGGVQRIDASGTRVRGESHLLLVGDPGTGKSQFLKYAAKITPRSVLTAGIGSTSAG 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 414 LTASVIRDpsSRNFIMEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRCSVLAAANSVfG 493
Cdd:cd17760 81 LTVTAVKD--GGEWNLEAGALVLADGGLCCIDEFNSLKEHDRTSIHEAMEQQTISVAKAGLVCKLNTRTTILAATNPK-G 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 494 RWDETKG-EDNIDFMPTILSRFDMIFIVKDEHNEERDMMLAKHVMTlhvsalTQTQAVEGEI--DLAKMKKFIAYCRARc 570
Cdd:cd17760 158 QYDPNESiSVNIALASPLLSRFDLVLVLLDTKNEDWDRIISSFILE------NKGEPSKSSKlwSMEKMRTYFCLIKNL- 230
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 571 GPRLSAEAAEKLKNRYiimrsgarQHERDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADVEEALRLFQVS 647
Cdd:cd17760 231 RPVLSDEANAILLRYY--------QLQRQSDCRNAARTTIRMLESLIRLAEAHARLMFRETVTEEDAITVVSVMESS 299
|
|
| MCM_OB |
pfam17207 |
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains ... |
136-271 |
1.40e-50 |
|
MCM OB domain; This family contains an OB-fold found within MCM proteins. This domain contains an insertion at the zinc binding motif.
Pssm-ID: 465381 [Multi-domain] Cd Length: 126 Bit Score: 172.28 E-value: 1.40e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 136 SIRILKSDMMSHLVKIPGIIISASAVRAKATRISIQCRSCHNTLTNIamrpglegYALPRKCNmdqagRPKCP-LDPYFI 214
Cdd:pfam17207 1 SIRDLRSEHIGKLVSVSGIVTRTSEVRPKLKKATFTCRKCGHTVGVK--------ITEPTKCP-----NPECGnKDPFKL 67
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 112293273 215 MPDKCKCVDFQTLKLQELPDAVPHGEMPRHMQLYCDRYLCDKVVPGNRVTIMGIYSI 271
Cdd:pfam17207 68 VHEKSKFVDFQKIKIQESPEEVPAGELPRSLDVILDDDLVDRVKPGDRVTVTGIYRV 124
|
|
| MCM_lid |
pfam17855 |
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins. |
558-648 |
4.71e-33 |
|
MCM AAA-lid domain; This entry represents the AAA-lid domain found in MCM proteins.
Pssm-ID: 465534 [Multi-domain] Cd Length: 86 Bit Score: 121.88 E-value: 4.71e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 558 KMKKFIAYCRARCGPRLSAEAAEKLKNRYIIMRSgarqheRDSDRRSSIPITVRQLEAIVRIAEALSKMKLQPFATEADV 637
Cdd:pfam17855 2 LLRKYIAYAREKIKPKLSEEAREKLVDAYVELRK------ESTGSGSSIPITVRQLESLIRLSEAHAKMRLSEIVTEEDV 75
|
90
....*....|.
gi 112293273 638 EEALRLFQVST 648
Cdd:pfam17855 76 EEAIRLLKESL 86
|
|
| MCM_N |
pfam14551 |
MCM N-terminal domain; This family contains the N-terminal domain of MCM proteins. |
32-130 |
1.00e-24 |
|
MCM N-terminal domain; This family contains the N-terminal domain of MCM proteins.
Pssm-ID: 464206 [Multi-domain] Cd Length: 95 Bit Score: 98.52 E-value: 1.00e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 32 QRRFKEFLRQYRVGTDrtgFTFKYRDELKRHYNLGEYWIEVEMEDLASFDEELADHLHKQPAEHLQLLEEAAKEVADEVt 111
Cdd:pfam14551 1 KRKFKDFLEEFREDGD---GEFKYRDQLREMIEREQRSLEVDLDDLREFDPDLAEALLENPYEYLPLFEEALKEVVKEL- 76
|
90
....*....|....*....
gi 112293273 112 RPRPAGDELLQDIQVMLKS 130
Cdd:pfam14551 77 SEDPDYAEEEKEFQVRFYN 95
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
376-520 |
9.15e-04 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 40.21 E-value: 9.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 112293273 376 NLLMLGDPGTAKSQLLKFVEKCSPIG----VYTSGKGSSAAGLTASVIRDPSSRNFImegGAMVLADGGVVCIDEFDKMR 451
Cdd:cd00009 21 NLLLYGPPGTGKTTLARAIANELFRPgapfLYLNASDLLEGLVVAELFGHFLVRLLF---ELAEKAKPGVLFIDEIDSLS 97
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112293273 452 EDDRVAIHEAMEQQTisiakagITTTLNSRCSVLAAANSvfgrwdetkgEDNIDFMPTILSRFDMIFIV 520
Cdd:cd00009 98 RGAQNALLRVLETLN-------DLRIDRENVRVIGATNR----------PLLGDLDRALYDRLDIRIVI 149
|
|
| AAA_5 |
pfam07728 |
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not ... |
376-449 |
4.39e-03 |
|
AAA domain (dynein-related subfamily); This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model.
Pssm-ID: 400191 [Multi-domain] Cd Length: 135 Bit Score: 38.04 E-value: 4.39e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 112293273 376 NLLMLGDPGTAKSQL---LKFVEKCSPIGVYTSGKGSSAAGLTASviRDPSSRNFIMEGGAMVLA--DGGVVCIDEFDK 449
Cdd:pfam07728 1 GVLLVGPPGTGKTELaerLAAALSNRPVFYVQLTRDTTEEDLFGR--RNIDPGGASWVDGPLVRAarEGEIAVLDEINR 77
|
|
| |
