|
Name |
Accession |
Description |
Interval |
E-value |
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
222-286 |
2.88e-35 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 127.90 E-value: 2.88e-35
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 85662410 222 LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
pfam01302 |
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of ... |
82-146 |
6.39e-31 |
|
CAP-Gly domain; Cytoskeleton-associated proteins (CAPs) are involved in the organization of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 460154 [Multi-domain] Cd Length: 65 Bit Score: 115.58 E-value: 6.39e-31
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 85662410 82 VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRPSKL 146
Cdd:pfam01302 1 VGDRVEVPGGRRGTVRYVGPVPFAPGVWVGVELDEPVGKNDGSVKGVRYFECPPKHGVFVRPSKV 65
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
222-286 |
2.35e-28 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 108.44 E-value: 2.35e-28
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 85662410 222 LGDRVLVGGT-KTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCPPKFGLFAPIHKV 286
Cdd:smart01052 1 VGDRVEVGGGgRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKV 67
|
|
| CAP_GLY |
smart01052 |
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and ... |
82-147 |
1.79e-26 |
|
Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network; A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove.
Pssm-ID: 214997 [Multi-domain] Cd Length: 68 Bit Score: 103.05 E-value: 1.79e-26
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 85662410 82 VGERVWVNG-VKPGVVQYLGETQFAPGQWAGVVLDDPV-GKNDGAVGGVRYFECPALQGIFTRPSKLT 147
Cdd:smart01052 1 VGDRVEVGGgGRRGTVRYVGPTPFAPGVWVGVELDEPLrGKNDGSVKGVRYFECPPKHGIFVRPSKVE 68
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
357-954 |
3.12e-19 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 93.85 E-value: 3.12e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 357 ALQEALKEKQqhIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLlvenvrkekvdlsnQL 436
Cdd:COG1196 217 ELKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAE----LAELEAELEELRL--------------EL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 437 EEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLR 516
Cdd:COG1196 277 EELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA 356
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 517 RGEIEELQHCLLQsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:COG1196 357 EAELAEAEEALLE------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEAL 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 597 KAKVQQATTEnmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELgNLQAKHDLET 676
Cdd:COG1196 431 AELEEEEEEE--------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAA-RLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 677 AMHGKEKEGLRQKLQEVQEELAGL--QQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAvaVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 755 EQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAeslcsaqhshVIESSDLSEETIRMKETVEGLQDKLN 834
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGR----------TLVAARLEAALRRAVTLAGRLREVTL 651
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 835 KRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELR 914
Cdd:COG1196 652 EGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLE 731
|
570 580 590 600
....*....|....*....|....*....|....*....|....*...
gi 85662410 915 VLLLEANRHSPGPERDLSREVHK--------AEWRIKEQKLKDDIRGL 954
Cdd:COG1196 732 AEREELLEELLEEEELLEEEALEelpeppdlEELERELERLEREIEAL 779
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
350-1000 |
1.29e-18 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 92.05 E-value: 1.29e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 350 RKISGTTALQEALKEKQQHIEQLLAE-----RDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQRARLL 421
Cdd:TIGR02169 251 EELEKLTEEISELEKRLEEIEQLLEElnkkiKDLGEEEQLRVKEKIGELEAEIASLERSiaeKERELEDAEERLAKLEAE 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 422 VENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL-----LEKAQAER--LLRELAD 494
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrekLEKLKREIneLKRELDR 410
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 495 NRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgpppADHPEAAET--LRLRERLLSASKEHQRDSTLLqDKYEHML 572
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIAGIEAKINELEEEKEDK----ALEIKKQEWklEQLAADLSKYEQELYDLKEEY-DRVEKEL 485
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 573 KTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL-------------------------MDNWKSKLDSLASDHQK 627
Cdd:TIGR02169 486 SKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGVhgtvaqlgsvgeryataievaagnrLNNVVVEDDAVAKEAIE 565
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 628 SLEDLKAT------LN-----SGPGAQQKEIGELKALVEGIKMEHQLE------LGNLQAKHDLETA-----------MH 679
Cdd:TIGR02169 566 LLKRRKAGratflpLNkmrdeRRDLSILSEDGVIGFAVDLVEFDPKYEpafkyvFGDTLVVEDIEAArrlmgkyrmvtLE 645
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 680 GK--EKEG-------------------------LRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLR 732
Cdd:TIGR02169 646 GElfEKSGamtggsraprggilfsrsepaelqrLRERLEGLKRELSSLQSE-LRRIENRLDELSQELSDASRKIGEIEKE 724
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 733 AQELEGldvEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHShVIES 812
Cdd:TIGR02169 725 IEQLEQ---EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEI-QAEL 800
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 813 SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDA 892
Cdd:TIGR02169 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDL 880
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 893 SGQLVHISQELLRKERSLNELRVllleanrhspgPERDLSREVHKAEWRIKEQKLKDDIrgLREKLTGLDKEKSLSEQrr 972
Cdd:TIGR02169 881 ESRLGDLKKERDELEAQLRELER-----------KIEELEAQIEKKRKRLSELKAKLEA--LEEELSEIEDPKGEDEE-- 945
|
730 740
....*....|....*....|....*...
gi 85662410 973 ysliDPASPPELLKLQHQLVSTEDALRD 1000
Cdd:TIGR02169 946 ----IPEEELSLEDVQAELQRVEEEIRA 969
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
358-1015 |
3.87e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 90.50 E-value: 3.87e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLE 437
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE----ELEAELEELESRLEELEEQLETLRSKVA 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 438 EERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRR 517
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKL--EEAELKELQAELEELEEELEELQEELERLEEALEELR 467
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 518 GEIEELQHCLLQSGpppADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAAnEKYAQEV-ADL 596
Cdd:TIGR02168 468 EELEEAEQALDAAE---RELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISVD-EGYEAAIeAAL 543
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 597 KAKVQQAttenmgLMDNWKSKLDSLASDHQKS--------LEDLKATLNSGPGAQ--QKEIGELKALVEGIKMEHQLE-- 664
Cdd:TIGR02168 544 GGRLQAV------VVENLNAAKKAIAFLKQNElgrvtflpLDSIKGTEIQGNDREilKNIEGFLGVAKDLVKFDPKLRka 617
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 665 ----LGNLQAKHDLETAMH--GKEKEGLR-----------------------QKLQEVQEELAGLQQHwREQLEEQASQH 715
Cdd:TIGR02168 618 lsylLGGVLVVDDLDNALElaKKLRPGYRivtldgdlvrpggvitggsaktnSSILERRREIEELEEK-IEELEEKIAEL 696
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 716 RLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKMldyEMLQRAEAQSRQEAERLREKLLVAENRL 795
Cdd:TIGR02168 697 EKALAELRKELEELE---EELEQLRKELEELSRQISALRKDLARLEAEV---EQLEERIAQLSKELTELEAEIEELEERL 770
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 796 QaaeslcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEK 875
Cdd:TIGR02168 771 E-----------------EAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 876 RRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLL---------LEANRHSPGPERD-LSREVHKAEWRIKEq 945
Cdd:TIGR02168 834 AATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELeallnerasLEEALALLRSELEeLSEELRELESKRSE- 912
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 946 kLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDALNQAQQVERLVEAL 1015
Cdd:TIGR02168 913 -LRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
362-911 |
3.12e-16 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 84.01 E-value: 3.12e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 362 LKEKQQHIEQLLAERDLE------RAEVAKATSHICEVEKEIALLKA--QHEQYVAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEitglteKASSARSQANSIQSQLEIIQEQArnQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 434 NQLEEERRKV-----EDLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTtvaeksrV 506
Cdd:pfam15921 342 DKIEELEKQLvlansELTEARTERDQFSQesGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSIT-------I 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 507 LQLEEELSLRRGEIEELqhcllqsgpppadhpeaaetlrlrERLLSASK-----EHQRDSTLLQDKYEHMLKtyqteVDK 581
Cdd:pfam15921 415 DHLRRELDDRNMEVQRL------------------------EALLKAMKsecqgQMERQMAAIQGKNESLEK-----VSS 465
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 582 LRAANEKYAQEvadLKAKVQQATTENMGLMDNWKSKLDSLAS--DHQKSLEDLKATLNSGPGAQQKEIGELKALvegiKM 659
Cdd:pfam15921 466 LTAQLESTKEM---LRKVVEELTAKKMTLESSERTVSDLTASlqEKERAIEATNAEITKLRSRVDLKLQELQHL----KN 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 660 EHQlELGNLQAKHD-LETAMHGKEK--EGLRQKLQEVQE------ELAGLQQHWREQLEEQASQHRLELQEAQ--DQCRD 728
Cdd:pfam15921 539 EGD-HLRNVQTECEaLKLQMAEKDKviEILRQQIENMTQlvgqhgRTAGAMQVEKAQLEKEINDRRLELQEFKilKDKKD 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 729 AQLRAQELEGLDVEYRgQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAE----NRLQAAESLCSA 804
Cdd:pfam15921 618 AKIRELEARVSDLELE-KVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKrnfrNKSEEMETTTNK 696
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 805 QHSHVIESSDLSEETIRMKETVEGLQDKLNK----RDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEA 880
Cdd:pfam15921 697 LKMQLKSAQSELEQTRNTLKSMEGSDGHAMKvamgMQKQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEKNKLSQ 776
|
570 580 590
....*....|....*....|....*....|..
gi 85662410 881 ELEAVSRKTHDASGQL-VHISQELLRKERSLN 911
Cdd:pfam15921 777 ELSTVATEKNKMAGELeVLRSQERRLKEKVAN 808
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
220-873 |
4.25e-16 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 83.20 E-value: 4.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 220 LHLGDRVLVGGTKtGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFapihkvIRIGFPSTSPAKA 299
Cdd:COG5244 4 LSVNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIF------IRPDDDSLLNGNA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 300 KKTKRmamgvsalthspssssissvssvassvggrpsRSGLLTETSSryarkISGTTALQEALKEKQQHIEQLLAERDLE 379
Cdd:COG5244 77 AYEKI--------------------------------KGGLVCESKG-----MDKDGEIKQENHEDRIHFEESKIRRLEE 119
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 380 RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQfrveeesitkgD 459
Cdd:COG5244 120 TIEALKSTEKEEIVELRRENEELDKINLSLRERISSEEPELNKDGSKLSYDELKEFVEESRVQVYDMV-----------E 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 460 LETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLttvaeksrvlqLEEELSLRRGEIEELQHCL--LQSgpppADH 537
Cdd:COG5244 189 LVSDISETLNRNGSIQRSSVRECERSNIHDVLFLVNGI-----------LDGVIDELNGELERLRRQLvsLMS----SHG 253
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 538 PEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLktyqteVDKLRAANEKYAQevADLKAKVQQAT----TENMGLMDN 613
Cdd:COG5244 254 IEVEENSRLKATLEKFQSLELKVNTLQEELYQNKL------LKKFYQIYEPFAQ--AALSSQLQYLAevieSENFGKLEN 325
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 614 WKS--------------KLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQlELGNLQAKHDLETAMh 679
Cdd:COG5244 326 IEIhiilkvlssisyalHIYTIKNTPDHLETTLQCFVNIAPISMWLSEFLQRKFSSKQETAFS-ICQFLEDNKDVTLIL- 403
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 680 gkekEGLRQKLQE-VQEELAGLQQHWREQLEEQASQHRLELQEAQ-DQCRDAQLRAQELEGLdveyrgqaqaieFLKEQI 757
Cdd:COG5244 404 ----KILHPILETtVPKLLAFLRTNSNFNDNDTLCLIGSLYEIARiDKLIGKEEISKQDNRL------------FLYPSC 467
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 758 SLAEKKMLDYeMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNK-- 835
Cdd:COG5244 468 DITLSSILTI-LFSDKLEVFFQGIESLLENITIFPEQPSQQTSDSENIKENSLLSDRLNEENIRLKEVLVQKENMLTEet 546
|
650 660 670 680
....*....|....*....|....*....|....*....|....*
gi 85662410 836 -------RDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLK 873
Cdd:COG5244 547 kikiiigRDLERKTLEENIKTLKVELNNKNNKLKEENFNLVNRLK 591
|
|
| NIP100 |
COG5244 |
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle ... |
82-143 |
4.97e-14 |
|
Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 227569 [Multi-domain] Cd Length: 669 Bit Score: 76.65 E-value: 4.97e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 85662410 82 VGERVWVNGVKpGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 143
Cdd:COG5244 6 VNDRVLLGDKF-GTVRFIGKTKFKDGIWIGLELDDPVGKNDGSVNGVRYFHCKKRHGIFIRP 66
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
356-886 |
5.81e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 5.81e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQY---VAEAEEKLQRARLLVENVRKEKVDL 432
Cdd:COG1196 284 EEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELeeeLEELEEELEEAEEELEEAEAELAEA 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 433 SNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE 512
Cdd:COG1196 364 EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEA 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 513 LSLRRGEIEELQHcllqsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQE 592
Cdd:COG1196 444 LEEAAEEEAELEE-------------EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGV 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 593 VADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQkeIGELKALVEGIKMEHQLElgnlqakh 672
Cdd:COG1196 511 KAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAA--IEYLKAAKAGRATFLPLD-------- 580
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 673 dletAMHGKEKEGLRQKLQEVQEELAGLQ--QHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAI 750
Cdd:COG1196 581 ----KIRARAALAAALARGAIGAAVDLVAsdLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGG 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 751 EFLKEQISLAEKKMLdyEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQ 830
Cdd:COG1196 657 SAGGSLTGGSRRELL--AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 85662410 831 DKLNKRDKEVTALTSQMDMLRAQVSALENKCksgEKKIDSLLKEKRRLEA-------ELEAVS 886
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEEL---ERELERLEREIEALGPvnllaieEYEELE 794
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
353-944 |
2.25e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 71.63 E-value: 2.25e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 353 SGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE-KLQRARLLVENVRKEKVD 431
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEELEE 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 432 LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQL-- 509
Cdd:TIGR02168 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSELis 530
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 510 -EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRD 560
Cdd:TIGR02168 531 vDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKF 610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 561 STLLQDKYEHMLKTYQTeVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSkldslasdhqksledlkATLNSGP 640
Cdd:TIGR02168 611 DPKLRKALSYLLGGVLV-VDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVITGGS-----------------AKTNSSI 672
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 641 GAQQKEIGELKALVEgiKMEHQLELGNlqakhdletamhgKEKEGLRQKLQEVQEELAGLQQHWRE---QLEEQASQHRL 717
Cdd:TIGR02168 673 LERRREIEELEEKIE--ELEEKIAELE-------------KALAELRKELEELEEELEQLRKELEElsrQISALRKDLAR 737
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 718 ELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYE-----MLQRAEAQSRQ------EAERLRE 786
Cdd:TIGR02168 738 LEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEaqieqLKEELKALREAldelraELTLLNE 817
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 787 KLLVAENRLQAAESLCSAQHSHVIESS----DLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCK 862
Cdd:TIGR02168 818 EAANLRERLESLERRIAATERRLEDLEeqieELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELE 897
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 863 SGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLE-ANRHSPGPERDLS---REVHKA 938
Cdd:TIGR02168 898 ELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTLEeAEALENKIEDDEEearRRLKRL 977
|
....*.
gi 85662410 939 EWRIKE 944
Cdd:TIGR02168 978 ENKIKE 983
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-799 |
6.27e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 69.97 E-value: 6.27e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARL 420
Cdd:COG1196 290 EYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE----LEEAEAELAEAEE 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 366 ALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 501 AEKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKT--YQTE 578
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELL----------EEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGvkAALL 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 579 VDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKAT------LNSGPGAQQKEIGELKA 652
Cdd:COG1196 516 LAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGratflpLDKIRARAALAAALARG 595
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 653 LVEGIKMEHQLELGNLQAK------HDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQC 726
Cdd:COG1196 596 AIGAAVDLVASDLREADARyyvlgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALL 675
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 85662410 727 RDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG1196 676 EAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELL 748
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
332-667 |
1.94e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 1.94e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 332 GGRPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYV 408
Cdd:TIGR02168 663 GGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDlarLEAEV 742
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 409 AEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL 488
Cdd:TIGR02168 743 EQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANL 822
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 489 LRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAetlrlrERLLSASKEHQRDSTLLQDKY 568
Cdd:TIGR02168 823 RERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESEL------EALLNERASLEEALALLRSEL 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 569 EHM---LKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLmdnwkskLDSLASDHQKSLEDLKATLNSGPGAQQK 645
Cdd:TIGR02168 897 EELseeLRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNL-------QERLSEEYSLTLEEAEALENKIEDDEEE 969
|
330 340
....*....|....*....|..
gi 85662410 646 EIGELKALVEGIKmehqlELGN 667
Cdd:TIGR02168 970 ARRRLKRLENKIK-----ELGP 986
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
394-1016 |
4.06e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 67.39 E-value: 4.06e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 394 EKEIALLKAQHEqyvaEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGE 473
Cdd:TIGR02168 224 ELELALLVLRLE----ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 474 LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSgppPADHPEAAETLRLRERLLSA 553
Cdd:TIGR02168 300 LEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL---EAELEELEAELEELESRLEE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 554 SKE----------------------------------------HQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEV 593
Cdd:TIGR02168 377 LEEqletlrskvaqlelqiaslnneierlearlerledrrerlQQEIEELLKKLEEAELKELQAELEELEEELEELQEEL 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 594 ADL---KAKVQQATTENMGLMDNWKSKLDSLASdHQKSLEDLKATLnSGPGAQQKEI--------GELKALVEGIKMEHQ 662
Cdd:TIGR02168 457 ERLeeaLEELREELEEAEQALDAAERELAQLQA-RLDSLERLQENL-EGFSEGVKALlknqsglsGILGVLSELISVDEG 534
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 663 LEL-------GNLQA--KHDLETAM----HGKEKEGLR-----------QKLQEVQEELAGLQ---QHWREQLEEQASQH 715
Cdd:TIGR02168 535 YEAaieaalgGRLQAvvVENLNAAKkaiaFLKQNELGRvtflpldsikgTEIQGNDREILKNIegfLGVAKDLVKFDPKL 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 716 RL-------------ELQEAQDQCR--DAQLRAQELEGLDVEYRG--------QAQAIEFLKEQISLAEKKMldyEMLQR 772
Cdd:TIGR02168 615 RKalsyllggvlvvdDLDNALELAKklRPGYRIVTLDGDLVRPGGvitggsakTNSSILERRREIEELEEKI---EELEE 691
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 773 AEAQSRQEAERLREKLlvaENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRA 852
Cdd:TIGR02168 692 KIAELEKALAELRKEL---EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 853 QVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLS 932
Cdd:TIGR02168 769 RLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 933 REVHKAEWRIKEQ-KLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDpasppELLKLQHQLVSTEDALRDALNQAQQVERL 1011
Cdd:TIGR02168 849 ELSEDIESLAAEIeELEELIEELESELEALLNERASLEEALALLRS-----ELEELSEELRELESKRSELRRELEELREK 923
|
....*
gi 85662410 1012 VEALR 1016
Cdd:TIGR02168 924 LAQLE 928
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
360-971 |
8.19e-11 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 66.40 E-value: 8.19e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 360 EALKEKQQHIEQLLAERDLERAEVAKATshICEVEKEIALLKAQHEQYVAEAEEKLQR-ARLLVENVRKEKVDLSNQLEE 438
Cdd:pfam12128 364 KALTGKHQDVTAKYNRRRSKIKEQNNRD--IAGIKDKLAKIREARDRQLAVAEDDLQAlESELREQLEAGKLEFNEEEYR 441
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 439 ERRKVEDLQFRVEEESITKGDLETQTQ----LEHARiGELEQSllleKAQAERLLRELADNRlTTVAEKSRVLQLEEE-L 513
Cdd:pfam12128 442 LKSRLGELKLRLNQATATPELLLQLENfderIERAR-EEQEAA----NAEVERLQSELRQAR-KRRDQASEALRQASRrL 515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 514 SLRRGEIEELQHCLLqsgPPPAD-----HPEAAETLRLRERLLSASKEHQRD--STLLQDKYEHMLKTYQTEVDKLRAAN 586
Cdd:pfam12128 516 EERQSALDELELQLF---PQAGTllhflRKEAPDWEQSIGKVISPELLHRTDldPEVWDGSVGGELNLYGVKLDLKRIDV 592
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 587 EKYAQEVADLKAKVQQAttenmglmdnwKSKLDSlASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ---L 663
Cdd:pfam12128 593 PEWAASEEELRERLDKA-----------EEALQS-AREKQAAAEEQLVQANGELEKASREETFARTALKNARLDLRrlfD 660
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 664 ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQ---DQCRDAQLrAQELEGLD 740
Cdd:pfam12128 661 EKQSEKDKKNKALAERKDSANERLNSLEAQLKQLDKKHQAWLEEQKEQKREARTEKQAYWqvvEGALDAQL-ALLKAAIA 739
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 741 VEYRGQAQAIEFLKEQI--SLAeKKMLDYEMLQRAEAQSRQEAERLREkllVAENRLQAAESLCSAQHSHVIESSDLSEE 818
Cdd:pfam12128 740 ARRSGAKAELKALETWYkrDLA-SLGVDPDVIAKLKREIRTLERKIER---IAVRRQEVLRYFDWYQETWLQRRPRLATQ 815
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 819 TIRMKETVEGLQDKLNKRDKEVtaltsqmdmlRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSR-KTHDASGQLV 897
Cdd:pfam12128 816 LSNIERAISELQQQLARLIADT----------KLRRAKLEMERKASEKQQVRLSENLRGLRCEMSKLATlKEDANSEQAQ 885
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 85662410 898 HISQELLRKERSLNELRVLLLEA----NRHSPGPERDLSREVHKAEWrikeQKLKDDIRGLREKLTGLDKEKSLSEQR 971
Cdd:pfam12128 886 GSIGERLAQLEDLKLKRDYLSESvkkyVEHFKNVIADHSGSGLAETW----ESLREEDHYQNDKGIRLLDYRKLVPYL 959
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
705-1017 |
9.65e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 66.23 E-value: 9.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 705 REQLEEQA--SQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQ----------AQAIEFLKEQISLAEKKML--DYEML 770
Cdd:TIGR02168 158 RAIFEEAAgiSKYKERRKETERKLERTRENLDRLEDILNELERQlkslerqaekAERYKELKAELRELELALLvlRLEEL 237
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 771 QRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDML 850
Cdd:TIGR02168 238 REELEELQEELKEAEEELEELTAELQELEE----------KLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQIL 307
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 851 RAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSpgpeRD 930
Cdd:TIGR02168 308 RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQL----ET 383
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 931 LSREVHKAEwrIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDALNQAQQVER 1010
Cdd:TIGR02168 384 LRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
|
....*..
gi 85662410 1011 LVEALRG 1017
Cdd:TIGR02168 462 ALEELRE 468
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
357-913 |
1.58e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 65.46 E-value: 1.58e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEE---KLQRARLL-----VENVRKE 428
Cdd:TIGR02168 369 ELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEllkKLEEAELKelqaeLEELEEE 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEqSLLLEKAQAERLLRELADNRLTTVAEKSRVLQ 508
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLE-RLQENLEGFSEGVKALLKNQSGLSGILGVLSE 527
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 509 L---EEEL----------------------------SLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEH 557
Cdd:TIGR02168 528 LisvDEGYeaaieaalggrlqavvvenlnaakkaiaFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDL 607
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 558 QRDSTLLQDKYEHMLKTYQTeVDKLRAANEKY-------------------------------------AQEVADLKAKV 600
Cdd:TIGR02168 608 VKFDPKLRKALSYLLGGVLV-VDDLDNALELAkklrpgyrivtldgdlvrpggvitggsaktnssilerRREIEELEEKI 686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 601 QQATTENmglmDNWKSKLDSLASDHQkSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQ----------LELGNLQA 670
Cdd:TIGR02168 687 EELEEKI----AELEKALAELRKELE-ELEEELEQLRKELEELSRQISALRKDLARLEAEVEqleeriaqlsKELTELEA 761
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 671 KHDLETAMHGKEKEGL------RQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYR 744
Cdd:TIGR02168 762 EIEELEERLEEAEEELaeaeaeIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 745 GQAQAIEFLKEQISLAEKKMLDyemLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAqhshviessdlseetirmke 824
Cdd:TIGR02168 842 DLEEQIEELSEDIESLAAEIEE---LEELIEELESELEALLNERASLEEALALLRSELEE-------------------- 898
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 825 tvegLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKR-RLEAELEAVSRKTHDASGQLVHISQEL 903
Cdd:TIGR02168 899 ----LSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSeEYSLTLEEAEALENKIEDDEEEARRRL 974
|
650
....*....|
gi 85662410 904 LRKERSLNEL 913
Cdd:TIGR02168 975 KRLENKIKEL 984
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
357-1010 |
1.78e-10 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 65.13 E-value: 1.78e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 357 ALQEaLKEKQQHIEQLLAERDLERAEVAK---ATSHICEVEKEIAllkaqheqyvAEAEEKLQRARLLVENVRKEKVDLS 433
Cdd:pfam05483 121 AIQE-LQFENEKVSLKLEEEIQENKDLIKennATRHLCNLLKETC----------ARSAEKTKKYEYEREETRQVYMDLN 189
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 434 NQLEEERRKVEDLQFRVEEESItkgDLETQTQLEHARIGELEQSLLLE----KAQAERLLRELADNR-----LTTVAEKS 504
Cdd:pfam05483 190 NNIEKMILAFEELRVQAENARL---EMHFKLKEDHEKIQHLEEEYKKEindkEKQVSLLLIQITEKEnkmkdLTFLLEES 266
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 505 R--VLQLEEELSLRRGEIEEL---QHCLLQsgpppadhpEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEV 579
Cdd:pfam05483 267 RdkANQLEEKTKLQDENLKELiekKDHLTK---------ELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQM 337
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 580 DKLRAANEKYAQEVADLKAKV----QQATTENMGLMDNwKSKLDSLASDHQKSLEDLKAtLNSGPGAQQKEIGELKALVE 655
Cdd:pfam05483 338 EELNKAKAAHSFVVTEFEATTcsleELLRTEQQRLEKN-EDQLKIITMELQKKSSELEE-MTKFKNNKEVELEELKKILA 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 656 gikmEHQLELGNLQAKHDLETAMHGKEKEgLRQKLQEVQEELAGLQ----------QHWREQLEEQASQ---HRLELQEA 722
Cdd:pfam05483 416 ----EDEKLLDEKKQFEKIAEELKGKEQE-LIFLLQAREKEIHDLEiqltaiktseEHYLKEVEDLKTElekEKLKNIEL 490
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 723 QDQCRDAQLR----AQELEGLDVEYRGQAQAIEFLKEQislaEKKML-DYEMLQRAEAQSRQEAERLREKLlvaenRLQA 797
Cdd:pfam05483 491 TAHCDKLLLEnkelTQEASDMTLELKKHQEDIINCKKQ----EERMLkQIENLEEKEMNLRDELESVREEF-----IQKG 561
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 798 AESLCSAQHSHViESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRR 877
Cdd:pfam05483 562 DEVKCKLDKSEE-NARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNK 640
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 878 LEAELEAVSRK------THDASGQLVHISQELLRKErsLNELRVLLLEANRHSpgPERDLSREVHKAEWRIKEQKLK--- 948
Cdd:pfam05483 641 LELELASAKQKfeeiidNYQKEIEDKKISEEKLLEE--VEKAKAIADEAVKLQ--KEIDKRCQHKIAEMVALMEKHKhqy 716
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 85662410 949 DDIRGLREKLTGLDKEKslsEQRRYSLiDPASPPELLKLQHQLVSTEDALRDALNQAQQVER 1010
Cdd:pfam05483 717 DKIIEERDSELGLYKNK---EQEQSSA-KAALEIELSNIKAELLSLKKQLEIEKEEKEKLKM 774
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
349-915 |
1.79e-10 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 65.55 E-value: 1.79e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 349 ARKISGTTALQEALK--EKQQHIEQLLAERDLERAEVAKaTSHICEVEKEIALLKAQHEQYVAEAEEKlQRARLLVENVR 426
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKdaEEAKKAEEERNNEEIRKFEEAR-MAHFARRQAAIKAEEARKADELKKAEEK-KKADEAKKAEE 1300
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 427 KEKVDLSNQLEEERRKVEDLQFRVEE------------ESITKGDlETQTQLEHARIGELEQSllLEKAQAERLLRELAD 494
Cdd:PTZ00121 1301 KKKADEAKKKAEEAKKADEAKKKAEEakkkadaakkkaEEAKKAA-EAAKAEAEAAADEAEAA--EEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 495 NRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEA---AETLRLRERLLSASKEhQRDSTLLQDKYEHM 571
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAkkkAEEKKKADEAKKKAEE-AKKADEAKKKAEEA 1456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 572 LKTYQTEvdklRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL--ASDHQKSLEDLKATLNSGPGAQQKEIGE 649
Cdd:PTZ00121 1457 KKAEEAK----KKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAkkAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 650 LKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEglRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDA 729
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE--EAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAE 1610
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 730 QLRAQELEGLDVEYRGQAQAIEFLKEQISLAE-KKMLDYEMLQRAEAQSRQEAERLREKllvAENRLQAAESLCSAQHSH 808
Cdd:PTZ00121 1611 EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEaEEKKKAEELKKAEEENKIKAAEEAKK---AEEDKKKAEEAKKAEEDE 1687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 809 VIESSDLSEETiRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLK---EKRRLEAELEAV 885
Cdd:PTZ00121 1688 KKAAEALKKEA-EEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKdeeEKKKIAHLKKEE 1766
|
570 580 590
....*....|....*....|....*....|
gi 85662410 886 SRKTHDASGQLVHISQELLRKERSLNELRV 915
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKRRMEV 1796
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
410-1017 |
8.61e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.15 E-value: 8.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 410 EAEEKLQRARllvENVRKekvdLSNQLEEERRKVEDLQFRVEeesITKGDLETQTQLEHARIGELEQSLLLEKAQAERLL 489
Cdd:TIGR02168 176 ETERKLERTR---ENLDR----LEDILNELERQLKSLERQAE---KAERYKELKAELRELELALLVLRLEELREELEELQ 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 490 RELADNRLTTVAEKSRVLQLEEELSLRRGE-------IEELQHCLLQSGpppadhpEAAETLRLRERLLSASKEHQRDSt 562
Cdd:TIGR02168 246 EELKEAEEELEELTAELQELEEKLEELRLEvseleeeIEELQKELYALA-------NEISRLEQQKQILRERLANLERQ- 317
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 563 llqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGL---MDNWKSKLDSLAS---DHQKSLEDLK--- 633
Cdd:TIGR02168 318 ---------LEELEAQLEELESKLDELAEELAELEEKLEELKEELESLeaeLEELEAELEELESrleELEEQLETLRskv 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 634 ATLNSGPGAQQKEIGELKALVEGIKMEHQlelGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWR------EQ 707
Cdd:TIGR02168 389 AQLELQIASLNNEIERLEARLERLEDRRE---RLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELErleealEE 465
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 708 LEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLK--------------EQISLAEK----------- 762
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLknqsglsgilgvlsELISVDEGyeaaieaalgg 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 763 KMLDYEMlqRAEAQSRQEAERLREKLL----------VAENRLQAAESLCSAQHSHVIESSDLSEET------------- 819
Cdd:TIGR02168 546 RLQAVVV--ENLNAAKKAIAFLKQNELgrvtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFdpklrkalsyllg 623
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 820 -IRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALenkcKSGEKKIDSLL---KEKRRLEAELEAVSRKTHDASGQ 895
Cdd:TIGR02168 624 gVLVVDDLDNALELAKKLRPGYRIVTLDGDLVRPGGVIT----GGSAKTNSSILerrREIEELEEKIEELEEKIAELEKA 699
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 896 LVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREvhkaewRIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRYSL 975
Cdd:TIGR02168 700 LAELRKELEELEEELEQLRKELEELSRQISALRKDLARL------EAEVEQLEERIAQLSKELTELEAEIEELEERLEEA 773
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 85662410 976 idpasPPELLKLQHQLVSTEDALRDALNQAQQVERLVEALRG 1017
Cdd:TIGR02168 774 -----EEELAEAEAEIEELEAQIEQLKEELKALREALDELRA 810
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
408-975 |
9.42e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 9.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 408 VAEAEEKLQRARLLVENVRK----------EKVDLSNQLEEERRKVE---DLQFRVEEESIT-----KGDLETQTQLEHA 469
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEEnierldliidEKRQQLERLRREREKAEryqALLKEKREYEGYellkeKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 470 RIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQHCLLQSGPPPADHPEAAETLRLR 547
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEIASLERSIAEKERELEDAEER 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 548 ERLLsaskEHQRDSTLLQ-DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENmglmDNWKSKLDSLasdhQ 626
Cdd:TIGR02169 324 LAKL----EAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEF----AETRDELKDY----R 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 627 KSLEDLKATLNSGPGAQQKEIGELKALVEGIKmEHQLELGNLQAKH-DLETAMHGKEKE--GLRQKLQEVQEELAGLQQH 703
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKInELEEEKEDKALEikKQEWKLEQLAADLSKYEQE 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 704 WR------EQLEEQASQHRLELQEAQDQCRDAQLRAQ---------------------ELEGLDVEYRGQ---------- 746
Cdd:TIGR02169 471 LYdlkeeyDRVEKELSKLQRELAEAEAQARASEERVRggraveevlkasiqgvhgtvaQLGSVGERYATAievaagnrln 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 747 ----------AQAIEFLKE-QIS-------------------LAEKKMLDY-----EMLQRAEA------------QSRQ 779
Cdd:TIGR02169 551 nvvveddavaKEAIELLKRrKAGratflplnkmrderrdlsiLSEDGVIGFavdlvEFDPKYEPafkyvfgdtlvvEDIE 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 780 EAERL--REKLLVAENRL-----------QAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQ 846
Cdd:TIGR02169 631 AARRLmgKYRMVTLEGELfeksgamtggsRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQE 710
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 847 MDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEanrhspg 926
Cdd:TIGR02169 711 LSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND------- 783
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 85662410 927 PERDLSREvhkaEWRIKE---QKLKDDIRGLREKLTGLDKEKSLSEQRRYSL 975
Cdd:TIGR02169 784 LEARLSHS----RIPEIQaelSKLEEEVSRIEARLREIEQKLNRLTLEKEYL 831
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
392-888 |
1.18e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 62.48 E-value: 1.18e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 392 EVEKEIALLKAQHEQYvAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVEDLQfrveeesitkgdletQTQLEHARI 471
Cdd:COG4717 75 ELEEELKEAEEKEEEY-AELQEELEELEEELEELEAEL----EELREELEKLEKLL---------------QLLPLYQEL 134
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 472 GELEQSLLLEKAQAERLLRELAdnrlttvaeksRVLQLEEELSLRRGEIEELQhcllqsgpppadhpeaaETLRLRERLL 551
Cdd:COG4717 135 EALEAELAELPERLEELEERLE-----------ELRELEEELEELEAELAELQ-----------------EELEELLEQL 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 552 SASKEHQrdstllqdkyehmLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglMDNWKSKLDSLASDHQKSLED 631
Cdd:COG4717 187 SLATEEE-------------LQDLAEELEELQQRLAELEEELEEAQEELEELEEE----LEQLENELEAAALEERLKEAR 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 632 LKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQakhdLETAMHGKEKEGLRQKLQEVQeELAGLQQHWREQLEEQ 711
Cdd:COG4717 250 LLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLA----LLFLLLAREKASLGKEAEELQ-ALPALEELEEEELEEL 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 712 ASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQ--AIEFLKEQIS--LAEKKMLDYEMLQRAEAQSrQEAERLREK 787
Cdd:COG4717 325 LAALGLPPDLSPEELLELLDRIEELQELLREAEELEEelQLEELEQEIAalLAEAGVEDEEELRAALEQA-EEYQELKEE 403
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 788 LLVAENRLQAAESLCSAQHSHVIESsdlseetiRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENkcksgEKK 867
Cdd:COG4717 404 LEELEEQLEELLGELEELLEALDEE--------ELEEELEELEEELEELEEELEELREELAELEAELEQLEE-----DGE 470
|
490 500
....*....|....*....|.
gi 85662410 868 IDSLLKEKRRLEAELEAVSRK 888
Cdd:COG4717 471 LAELLQELEELKAELRELAEE 491
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
374-891 |
4.04e-09 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 60.93 E-value: 4.04e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 374 AERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEE 453
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 454 SiTKGDLETQTQLEHARIGELEQSlLLEKAQAERLLRELADNR----LTTVAEKSRVLQLEEELSLRRGEIEELQHcllq 529
Cdd:PTZ00121 1404 K-KKADELKKAAAAKKKADEAKKK-AEEKKKADEAKKKAEEAKkadeAKKKAEEAKKAEEAKKKAEEAKKADEAKK---- 1477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 530 sgppPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQT-EVDKLRAANEKYAQEVADLKAKVQQAttenm 608
Cdd:PTZ00121 1478 ----KAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAkKADEAKKAEEAKKADEAKKAEEKKKA----- 1548
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 609 glmDNWKSKLDSLASDHQKSLEDLKATLNSGPGAQQKeiGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQ 688
Cdd:PTZ00121 1549 ---DELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK--AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAE 1623
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 689 KLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrGQAQAIEFLKEQislaEKKMLDYE 768
Cdd:PTZ00121 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE-------DKKKAEEAKKAE----EDEKKAAE 1692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 769 MLQRaEAQSRQEAERLREKllvAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMD 848
Cdd:PTZ00121 1693 ALKK-EAEEAKKAEELKKK---EAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 85662410 849 MLRAQVSALENKCKSGEKKIDsllkEKRRLEAEleavsRKTHD 891
Cdd:PTZ00121 1769 KAEEIRKEKEAVIEEELDEED----EKRRMEVD-----KKIKD 1802
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
673-1028 |
1.02e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 59.69 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 673 DLETAMHGKEKEGLRQKLQEVQEELAGLQQHWRE------QLEEQASQHRLELQEAQDQCRDAQLRAQELegldveyrgq 746
Cdd:TIGR02168 224 ELELALLVLRLEELREELEELQEELKEAEEELEEltaelqELEEKLEELRLEVSELEEEIEELQKELYAL---------- 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 747 AQAIEFLKEQIslaekkmldyEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviESSDLSEETIRMKETV 826
Cdd:TIGR02168 294 ANEISRLEQQK----------QILRERLANLERQLEELEAQLEELESKLDELAE----------ELAELEEKLEELKEEL 353
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 827 EGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEavsrkthdasgqlvHISQELLRK 906
Cdd:TIGR02168 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLE--------------RLEDRRERL 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 907 ERSLNELRVLLLEANRHspgperDLSREVhkAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDpasppELLK 986
Cdd:TIGR02168 420 QQEIEELLKKLEEAELK------ELQAEL--EELEEELEELQEELERLEEALEELREELEEAEQALDAAER-----ELAQ 486
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 85662410 987 LQHQLVSTEDALRDALNQAQQVERLVEALRGCSDRTQTISNS 1028
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
337-764 |
1.11e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 59.31 E-value: 1.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 337 RSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:TIGR02169 651 KSGAMTGGSRAPRGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 417 RARLLVEnvrkekvdlsnQLEEERRKVEDLQFRVEEESITKGDLEtqtqlehARIGELEQSLLLEKAQAERLLRELADNR 496
Cdd:TIGR02169 731 EEEKLKE-----------RLEELEEDLSSLEQEIENVKSELKELE-------ARIEELEEDLHKLEEALNDLEARLSHSR 792
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 497 LTTVAEKSRvlQLEEELSLRRGEIEELQHCLlqsgpppadhpeaaETLRLRERLLSASKEH-QRDSTLLQDKyehmLKTY 575
Cdd:TIGR02169 793 IPEIQAELS--KLEEEVSRIEARLREIEQKL--------------NRLTLEKEYLEKEIQElQEQRIDLKEQ----IKSI 852
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 576 QTEVDKLRAANEKYAQEVADLKAKVQQattenmglmdnwkskLDSLASDHQKSLEDLKATLnsgpGAQQKEIGELKALVE 655
Cdd:TIGR02169 853 EKEIENLNGKKEELEEELEELEAALRD---------------LESRLGDLKKERDELEAQL----RELERKIEELEAQIE 913
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 656 giKMEHQLELgnlqakhdletamhgkekegLRQKLQEVQEELAGLQQHWREQLEEqaSQHRLELQEAQDQCRDAQLRAQE 735
Cdd:TIGR02169 914 --KKRKRLSE--------------------LKAKLEALEEELSEIEDPKGEDEEI--PEEELSLEDVQAELQRVEEEIRA 969
|
410 420
....*....|....*....|....*....
gi 85662410 736 LEglDVEYRGQAQAIEFLKEQISLAEKKM 764
Cdd:TIGR02169 970 LE--PVNMLAIQEYEEVLKRLDELKEKRA 996
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
544-888 |
1.34e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 58.98 E-value: 1.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 544 LRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRA--ANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSL 621
Cdd:pfam05557 12 SQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQElqKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKK 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 622 ASDHQKSLEDLKATLNsgpgAQQKEIGELKALVEGIKMEHQ---LELGNLQAKHDLETAmHGKEKEGLRQKLQEVQEELA 698
Cdd:pfam05557 92 LNEKESQLADAREVIS----CLKNELSELRRQIQRAELELQstnSELEELQERLDLLKA-KASEAEQLRQNLEKQQSSLA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 699 GLQQHWREQLEEQASQH--RLELQEAQDQcrdaQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQ 776
Cdd:pfam05557 167 EAEQRIKELEFEIQSQEqdSEIVKNSKSE----LARIPELEKELERLREHNKHLNENIENKLLLKEEVEDLKRKLEREEK 242
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 777 SRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMketvegLQDKLNKRDkEVTALTSQMDMLRAQVSA 856
Cdd:pfam05557 243 YREEAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQL------QQREIVLKE-ENSSLTSSARQLEKARRE 315
|
330 340 350
....*....|....*....|....*....|..
gi 85662410 857 LENKCKSGEKKIDSLLKEKRRLEAELEAVSRK 888
Cdd:pfam05557 316 LEQELAQYLKKIEDLNKKLKRHKALVRRLQRR 347
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
412-955 |
1.77e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 58.98 E-value: 1.77e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 412 EEKLQRARLLVENVRKEKVDlsNQLEEERRKVEDLQFRVEEESitkgdletqtQLEHARIGELEQSLLlekaQAERLLRE 491
Cdd:pfam15921 58 EVELDSPRKIIAYPGKEHIE--RVLEEYSHQVKDLQRRLNESN----------ELHEKQKFYLRQSVI----DLQTKLQE 121
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 492 LADNRLTTVAEKSRVLQLEEELslrRGEIEELQHCLlqsgpppadhpEAAETLRlrerllsaskehqrdstllqdkyEHM 571
Cdd:pfam15921 122 MQMERDAMADIRRRESQSQEDL---RNQLQNTVHEL-----------EAAKCLK-----------------------EDM 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 572 LKTYQTEVDKLRA---ANEKYAQEVADLKAKVQQATTENMGLMDNWKS-KLDSLASDHQKSLEDLKATLNSGPGAQQKEI 647
Cdd:pfam15921 165 LEDSNTQIEQLRKmmlSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTmHFRSLGSAISKILRELDTEISYLKGRIFPVE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 648 GELKAL-------VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ----------LEE 710
Cdd:pfam15921 245 DQLEALksesqnkIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQnsmymrqlsdLES 324
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 711 QASQHRLELQEAQDQCRDaqlraqelegldveyrgqaqAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLV 790
Cdd:pfam15921 325 TVSQLRSELREAKRMYED--------------------KIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLA 384
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 791 AENRLQAAESLCSAQHSHviessdLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSA-LENKCKSGEKKID 869
Cdd:pfam15921 385 DLHKREKELSLEKEQNKR------LWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGqMERQMAAIQGKNE 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 870 SLLKEKrRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKE-QKLK 948
Cdd:pfam15921 459 SLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQElQHLK 537
|
....*..
gi 85662410 949 DDIRGLR 955
Cdd:pfam15921 538 NEGDHLR 544
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
363-886 |
4.24e-08 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 57.49 E-value: 4.24e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 363 KEKQQHIEQLLAERDLERAEVAKATSHICEvekeiaLLKAQHEQYvAEAEEklQRARLL------------VENVRKEKV 430
Cdd:pfam01576 18 KERQQKAESELKELEKKHQQLCEEKNALQE------QLQAETELC-AEAEE--MRARLAarkqeleeilheLESRLEEEE 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 431 DLSNQLEEERRK----VEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRE--LADNRLttvAEKS 504
Cdd:pfam01576 89 ERSQQLQNEKKKmqqhIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKErkLLEERI---SEFT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 505 RVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEaaetlRLRERLLSASKEHQRDSTLLQDKYEHMlktyQTEVDKLRA 584
Cdd:pfam01576 166 SNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEE-----KGRQELEKAKRKLEGESTDLQEQIAEL----QAQIAELRA 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 585 ANEKYAQEVADLKAKVQQATTENMGLMDNWKsKLDSLASDHQKSLEDLKATLNSGPgAQQKEIGE-LKAL---------- 653
Cdd:pfam01576 237 QLAKKEEELQAALARLEEETAQKNNALKKIR-ELEAQISELQEDLESERAARNKAE-KQRRDLGEeLEALkteledtldt 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 654 ---VEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELA-GLQQHWREQLEEQASQHRLELQEAQDQCrda 729
Cdd:pfam01576 315 taaQQELRSKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTeQLEQAKRNKANLEKAKQALESENAELQA--- 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 730 QLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAeAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHV 809
Cdd:pfam01576 392 ELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKL-SKLQSELESVSSLLNEAEGKNIKLSKDVSSLESQL 470
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 810 IESSDLSEETIRMK-----------ETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRL 878
Cdd:pfam01576 471 QDTQELLQEETRQKlnlstrlrqleDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRL 550
|
....*...
gi 85662410 879 EAELEAVS 886
Cdd:pfam01576 551 QRELEALT 558
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
359-884 |
4.68e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 57.36 E-value: 4.68e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 359 QEALKEKQQHIEQLlAERDLErAEVAKATSHICEVEKEIALLKAQHEQyvaeAEEKLQRARLLVENVRKEKVDLSnQLEE 438
Cdd:PRK02224 186 RGSLDQLKAQIEEK-EEKDLH-ERLNGLESELAELDEEIERYEEQREQ----ARETRDEADEVLEEHEERREELE-TLEA 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 439 ErrkVEDLQFRVEEESITKGDLETQTQLEHARIGELEqslllekaqaERLLRELADNRLTTvAEKSRVLQLEEELSLRRg 518
Cdd:PRK02224 259 E---IEDLRETIAETEREREELAEEVRDLRERLEELE----------EERDDLLAEAGLDD-ADAEAVEARREELEDRD- 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 519 eiEELQHCLLQSGPPPADHPEAAETLRLR-ERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADLK 597
Cdd:PRK02224 324 --EELRDRLEECRVAAQAHNEEAESLREDaDDLEERAEELREEAAELESE----LEEAREAVEDRREEIEELEEEIEELR 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 598 AKVQQATTEnmglMDNWKSKLDSLASDHQK---SLEDLKATLNSgpgaQQKEIGELKAL------------------VEG 656
Cdd:PRK02224 398 ERFGDAPVD----LGNAEDFLEELREERDElreREAELEATLRT----ARERVEEAEALleagkcpecgqpvegsphVET 469
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 657 I------KMEHQLELGNLQAKHD-----LETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQLEE---QASQHRLELQEA 722
Cdd:PRK02224 470 IeedrerVEELEAELEDLEEEVEeveerLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEkreRAEELRERAAEL 549
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 723 QDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLL-VAENRLQAAESL 801
Cdd:PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREaLAELNDERRERL 629
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 802 CSAQHSHVIESSDLSEETI-RMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSgekkIDSLLKEKRRLEA 880
Cdd:PRK02224 630 AEKRERKRELEAEFDEARIeEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEE----LEELRERREALEN 705
|
....
gi 85662410 881 ELEA 884
Cdd:PRK02224 706 RVEA 709
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
681-922 |
6.74e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 55.93 E-value: 6.74e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 681 KEKEGLRQKLQEVQEELAGLQQhWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaqaieflkEQISLA 760
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEK-ELAALKKEEKALLKQLAALERRIAALARRIRALE-----------------QELAAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 761 EKKMLDyemLQRAEAQSRQEAERLREKLlvaENRLQAAESLCSAQHSHVIESSDLSEETIRMketVEGLQDKLNKRDKEV 840
Cdd:COG4942 82 EAELAE---LEKEIAELRAELEAQKEEL---AELLRALYRLGRQPPLALLLSPEDFLDAVRR---LQYLKYLAPARREQA 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 841 TALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEA 920
Cdd:COG4942 153 EELRADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
..
gi 85662410 921 NR 922
Cdd:COG4942 233 EA 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
362-903 |
8.41e-08 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 56.57 E-value: 8.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 362 LKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaeaEEKLQRARLLVENVRKEK--VDLSNQLEEE 439
Cdd:TIGR04523 91 LKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKK------ENKKNIDKFLTEIKKKEKelEKLNNKYNDL 164
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 440 RRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAER---LLRELADnrlttvaEKSRVLQLEEELSLR 516
Cdd:TIGR04523 165 KKQKEELENELNLLEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKnksLESQISE-------LKKQNNQLKDNIEKK 237
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 517 RGEIEELQhcllqsgpppadhpeaAETLRLRERLLSASKEHQRDSTLLQDKyEHMLKTYQTEVDKLRAANEKYAQEVADL 596
Cdd:TIGR04523 238 QQEINEKT----------------TEISNTQTQLNQLKDEQNKIKKQLSEK-QKELEQNNKKIKELEKQLNQLKSEISDL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 597 KAKVQQattenmglmdNWKSKLDSLASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEhqlelgnlqaKHDLET 676
Cdd:TIGR04523 301 NNQKEQ----------DWNKELKSELKNQEKKLEEIQNQISQ----NNKIISQLNEQISQLKKE----------LTNSES 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 677 AMHGKEKEgLRQKLQEVQEELAGLQQHWRE--QLEEQASQHRLELQEAQDQcrdAQLRAQELEGLDVEYRGQAQAIEFLK 754
Cdd:TIGR04523 357 ENSEKQRE-LEEKQNEIEKLKKENQSYKQEikNLESQINDLESKIQNQEKL---NQQKDEQIKKLQQEKELLEKEIERLK 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 755 EQISlaekkmldyemlqraeaQSRQEAERLREKLLVAENRLQAAESLCSAQHSHViesSDLSEETIRMKETVEGLQdkln 834
Cdd:TIGR04523 433 ETII-----------------KNNSEIKDLTNQDSVKELIIKNLDNTRESLETQL---KVLSRSINKIKQNLEQKQ---- 488
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 85662410 835 krdKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQEL 903
Cdd:TIGR04523 489 ---KELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFEL 554
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
350-620 |
1.58e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.92 E-value: 1.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEialLKAQHEQYVAEAEEKLQRARLL-VENVRKE 428
Cdd:PTZ00121 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE---KKMKAEEAKKAEEAKIKAEELKkAEEEKKK 1634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 429 KVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLT------TVAE 502
Cdd:PTZ00121 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAeelkkkEAEE 1714
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpPPADHPEAAETLRLRE----RLLSASKEHQRDSTLLQDKYEHMLKTYQTE 578
Cdd:PTZ00121 1715 KKKAEELKKAEEENKIKAEEAKK-------EAEEDKKKAEEAKKDEeekkKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 85662410 579 VD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDS 620
Cdd:PTZ00121 1788 EDeKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDS 1830
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
422-965 |
2.13e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.03 E-value: 2.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 422 VENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVA 501
Cdd:TIGR04523 35 EKQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKN 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 502 EKSRVLQLEEELSLRRGEIEELQhcllqsgpppADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDK 581
Cdd:TIGR04523 115 DKEQKNKLEVELNKLEKQKKENK----------KNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLN 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 582 LRAANEKYAQE-------VADLKAKVQQATTENmglmdnwkSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALV 654
Cdd:TIGR04523 185 IQKNIDKIKNKllklellLSNLKKKIQKNKSLE--------SQISELKK-QNNQLKDNIEKKQQEINEKTTEISNTQTQL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 655 EGIKMEHQLELGNLQAKHdLETAMHGKEKEGLRQKLQEVQEELAGL----QQHWREQLEEQASQHRLELQEAQDQCRDAQ 730
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQ-KELEQNNKKIKELEKQLNQLKSEISDLnnqkEQDWNKELKSELKNQEKKLEEIQNQISQNN 334
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 731 lraqelegldveyrgqaQAIEFLKEQISLAEK----KMLDYEMLQRAEAQSRQEAERL-REKllvaENRLQAAESLCSAQ 805
Cdd:TIGR04523 335 -----------------KIISQLNEQISQLKKeltnSESENSEKQRELEEKQNEIEKLkKEN----QSYKQEIKNLESQI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 806 HSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAV 885
Cdd:TIGR04523 394 NDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKVL 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 886 SRKTHDASGQLVHISQELLRKERSLNELRvlllEANRHSPGPERDLSREVhkAEWRIKEQKLKDDIRGLREKLTGLDKEK 965
Cdd:TIGR04523 474 SRSINKIKQNLEQKQKELKSKEKELKKLN----EEKKELEEKVKDLTKKI--SSLKEKIEKLESEKKEKESKISDLEDEL 547
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
346-973 |
2.54e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.07 E-value: 2.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 346 SRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaEAEEKLQRARLLVENV 425
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKE----EIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 426 RKEKVDLSN---QLEEERRKVEDLQFRVEEESITKGDLEtqtqlEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE 502
Cdd:PRK03918 255 RKLEEKIREleeRIEELKKEIEELEEKVKELKELKEKAE-----EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEER 329
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 503 KSRVLQLEEELSLRRGEIEELQHcllqsgpppaDHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKtyqTEVDKL 582
Cdd:PRK03918 330 IKELEEKEERLEELKKKLKELEK----------RLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLE---KELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 583 RAANEKYAQEVADLKAKvqqattenmglmdnwKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKalvEGIKMEHQ 662
Cdd:PRK03918 397 EKAKEEIEEEISKITAR---------------IGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHR---KELLEEYT 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 663 LELGNLQAkhdlETAMHGKEKEGLRQKLQEVQEELAGLQQHWR--------EQLEEQASQHRLElqEAQDQCRDAQLRAQ 734
Cdd:PRK03918 459 AELKRIEK----ELKEIEEKERKLRKELRELEKVLKKESELIKlkelaeqlKELEEKLKKYNLE--ELEKKAEEYEKLKE 532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 735 ELEGLDVEYRGQAQAIEFLKEqisLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQaaeslcsaqhSHVIESSD 814
Cdd:PRK03918 533 KLIKLKGEIKSLKKELEKLEE---LKKKLAELEKKLDELEEELAELLKELEELGFESVEELE----------ERLKELEP 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 815 LSEETIRMKETVEGLQDKLNKRDKEVTALtsqmDMLRAQVSALENKCKSGEKKIDSLlkEKRRLEAELEAVSRKThdasg 894
Cdd:PRK03918 600 FYNEYLELKDAEKELEREEKELKKLEEEL----DKAFEELAETEKRLEELRKELEEL--EKKYSEEEYEELREEY----- 668
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 895 qlVHISQELLRKERSLNELRVLLLEANRHSpgpeRDLSREVHKAEWRIKE----QKLKDDIRGLREK---LTGLDKEKSL 967
Cdd:PRK03918 669 --LELSRELAGLRAELEELEKRREEIKKTL----EKLKEELEEREKAKKEleklEKALERVEELREKvkkYKALLKERAL 742
|
....*.
gi 85662410 968 SEQRRY 973
Cdd:PRK03918 743 SKVGEI 748
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
359-1017 |
2.97e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 54.92 E-value: 2.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRarlLVENVRKEKVDLSNQLEE 438
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLER---EIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 439 ERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAE----KSRVLQLEEELS 514
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEiaslERRKSNIPARLL 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 515 LRRGEIEElqhcllQSGPPPADHPEAAETLRLR----------ERLLsaskeHQRDSTLL-QDKYEHMLKTYqteVDKLR 583
Cdd:COG4913 444 ALRDALAE------ALGLDEAELPFVGELIEVRpeeerwrgaiERVL-----GGFALTLLvPPEHYAAALRW---VNRLH 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 584 AANEKYAQEVADLKAKVQQATTENMGLMDnwksKLDSLASDHQKSLEDlkatlnsgpgaqqkEIGELKALVegiKMEHQL 663
Cdd:COG4913 510 LRGRLVYERVRTGLPDPERPRLDPDSLAG----KLDFKPHPFRAWLEA--------------ELGRRFDYV---CVDSPE 568
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 664 ELGNL--------QAKHDLETAMHGKEKEGLRQ---------KLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQc 726
Cdd:COG4913 569 ELRRHpraitragQVKGNGTRHEKDDRRRIRSRyvlgfdnraKLAALEAELAELEEE-LAEAEERLEALEAELDALQER- 646
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 727 RDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLlvaenrlqaaeslcsaqh 806
Cdd:COG4913 647 REALQRLAEYSWDEIDVASAEREIAELEAELERLDASSDDLAALEEQLEELEAELEELEEEL------------------ 708
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 807 shviessdlseetirmketvEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEkkiDSLLKEKRRLEAELEAVS 886
Cdd:COG4913 709 --------------------DELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLEL---RALLEERFAAALGDAVER 765
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 887 RKTHDASGQLVHISQELLRKERslnELRVLLLEANRHSPGPERDLSREV------------------HKAEWRIKEQKLK 948
Cdd:COG4913 766 ELRENLEERIDALRARLNRAEE---ELERAMRAFNREWPAETADLDADLeslpeylalldrleedglPEYEERFKELLNE 842
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 949 DDIRGLREKLTGLDKE------------KSLS-----EQRRYSL-IDPASPPELLKLQHQLVS-TEDALRDALNQAQ--- 1006
Cdd:COG4913 843 NSIEFVADLLSKLRRAireikeridplnDSLKripfgPGRYLRLeARPRPDPEVREFRQELRAvTSGASLFDEELSEarf 922
|
730
....*....|..
gi 85662410 1007 -QVERLVEALRG 1017
Cdd:COG4913 923 aALKRLIERLRS 934
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
405-603 |
4.54e-07 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 53.87 E-value: 4.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 405 EQYVAE-AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDlqFRVEEESItkgDLETQTQLEHARIGELEQSLL---L 480
Cdd:COG3206 159 EAYLEQnLELRREEARKALEFLEEQLPELRKELEEAEAALEE--FRQKNGLV---DLSEEAKLLLQQLSELESQLAearA 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 481 EKAQAERLLRELAD------NRLTTVAEKSRVLQLEEELSLRRGEIEELqhcLLQSGPppaDHPEAAETLRLRERLLSas 554
Cdd:COG3206 234 ELAEAEARLAALRAqlgsgpDALPELLQSPVIQQLRAQLAELEAELAEL---SARYTP---NHPDVIALRAQIAALRA-- 305
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 85662410 555 kehqrdstLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQA 603
Cdd:COG3206 306 --------QLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
341-756 |
1.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 52.63 E-value: 1.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARL 420
Cdd:COG1196 328 LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEE 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 421 LVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTV 500
Cdd:COG1196 408 AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 501 AEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPP---------------ADHPEAAETLRL------------------- 546
Cdd:COG1196 488 EAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGlagavavligveaayEAALEAALAAALqnivveddevaaaaieylk 567
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 547 -----RERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLM--------DN 613
Cdd:COG1196 568 aakagRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRravtlagrLR 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 614 WKSKLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEV 693
Cdd:COG1196 648 EVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALE 727
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 85662410 694 QEELAGLQQHWREQLEEQASQHRLE---------LQEAQDQCRDAQLRAQELEGLDV----EYRGQAQAIEFLKEQ 756
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEAleelpeppdLEELERELERLEREIEALGPVNLlaieEYEELEERYDFLSEQ 803
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
341-785 |
1.37e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.46 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 341 LTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERaEVAKATSHICEVEKEIALLKAQHEQYvAEAEEKLQRARL 420
Cdd:COG4717 93 LQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQ-ELEALEAELAELPERLEELEERLEEL-RELEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 421 LVENVRKEKVDL--------SNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL--LLEKAQAERLLR 490
Cdd:COG4717 171 ELAELQEELEELleqlslatEEELQDLAEELEELQQRLAE-------LEEELEEAQEELEELEEELeqLENELEAAALEE 243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 491 ELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEH 570
Cdd:COG4717 244 RLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEE 323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 571 MLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEN--MGLMDNWKSKLDSLASDHQKSLEDLKATLNsgpgaQQKEIG 648
Cdd:COG4717 324 LLAALGLPPDLSPEELLELLDRIEELQELLREAEELEeeLQLEELEQEIAALLAEAGVEDEEELRAALE-----QAEEYQ 398
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 649 ELKALVEgiKMEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEVQEELAGLQQhwreqleeqasqhrlELQEAQDQCRD 728
Cdd:COG4717 399 ELKEELE--ELEEQLEELLGELEELLEAL----DEEELEEELEELEEELEELEE---------------ELEELREELAE 457
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 85662410 729 AQLRAQELEGlDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLR 785
Cdd:COG4717 458 LEAELEQLEE-DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
343-969 |
2.06e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.06e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 343 ETSSRYARKISGTTALQEALKEKQQHIEQLLAERDlERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLV 422
Cdd:PRK03918 145 ESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIE-RLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 423 ENVRKEKvdlsNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERL--LRELADNRLTTV 500
Cdd:PRK03918 224 EKLEKEV----KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELkeLKEKAEEYIKLS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 501 AEKSRVLQ----LEEELSLRRGEIEELQHCLlqsgpppadhPEAAETLRLRERLLSASKEHQRDSTLLQDKYE--HMLKT 574
Cdd:PRK03918 300 EFYEEYLDelreIEKRLSRLEEEINGIEERI----------KELEEKEERLEELKKKLKELEKRLEELEERHElyEEAKA 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 575 YQTEVDKLRAANEKYaqEVADLKAKVQQATTEnmglmdnwkskldslasdhQKSLEDLKATLNSGPGAQQKEIGELKALV 654
Cdd:PRK03918 370 KKEELERLKKRLTGL--TPEKLEKELEELEKA-------------------KEEIEEEISKITARIGELKKEIKELKKAI 428
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 655 EGIKmehqlelgnlqaKHDLETAMHGKEKEglrqklqevQEELAGLQQHWREQLEEQASqhrlELQEAQDQCRDAQLRAQ 734
Cdd:PRK03918 429 EELK------------KAKGKCPVCGRELT---------EEHRKELLEEYTAELKRIEK----ELKEIEEKERKLRKELR 483
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 735 ELEGLDVEYRGQAQAIEFLKEQISLAEK-KMLDYEMLQRAEaqsrQEAERLREKLLVAENRLQAAESlcsaqhsHVIESS 813
Cdd:PRK03918 484 ELEKVLKKESELIKLKELAEQLKELEEKlKKYNLEELEKKA----EEYEKLKEKLIKLKGEIKSLKK-------ELEKLE 552
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 814 DLSEETIRMKETVEGLQDKLNKRDKEVTALT-SQMDMLRAQVSALE------NKCKSGEKKIDSLLKEKRRLEAELEAVS 886
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEELAELLKELEELGfESVEELEERLKELEpfyneyLELKDAEKELEREEKELKKLEEELDKAF 632
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 887 RKTHDASGQLVHISQELLRKERSLNElrvlllEANRHSPGPERDLSREVHKAEWRIKE-----QKLKDDIRGLREKLTGL 961
Cdd:PRK03918 633 EELAETEKRLEELRKELEELEKKYSE------EEYEELREEYLELSRELAGLRAELEElekrrEEIKKTLEKLKEELEER 706
|
....*...
gi 85662410 962 DKEKSLSE 969
Cdd:PRK03918 707 EKAKKELE 714
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
477-799 |
2.15e-06 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 51.94 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 477 SLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRgEIEELQhclLQSGPPPADHPEAAETLRLRERLlsaSKE 556
Cdd:COG3206 58 TLLVEPQSSDVLLSGLSSLSASDSPLETQIEILKSRPVLER-VVDKLN---LDEDPLGEEASREAAIERLRKNL---TVE 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 557 HQRDSTLLQDKYEH------------MLKTYQTE-----VDKLRAANEKYAQEVADLKAKVQQATT------ENMGLMDn 613
Cdd:COG3206 131 PVKGSNVIEISYTSpdpelaaavanaLAEAYLEQnlelrREEARKALEFLEEQLPELRKELEEAEAaleefrQKNGLVD- 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 614 wkskLDSLASDHQKSLEDLKATLNsgpgAQQKEIGELKALVEGIkmEHQLELGNLQAKHDLETAmhgkEKEGLRQKLQEV 693
Cdd:COG3206 210 ----LSEEAKLLLQQLSELESQLA----EARAELAEAEARLAAL--RAQLGSGPDALPELLQSP----VIQQLRAQLAEL 275
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 694 QEELAGLQQHWREQlEEQASQHRLELQEAQDQCRdaQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRA 773
Cdd:COG3206 276 EAELAELSARYTPN-HPDVIALRAQIAALRAQLQ--QEAQRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAE 352
|
330 340
....*....|....*....|....*.
gi 85662410 774 EAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:COG3206 353 LRRLEREVEVARELYESLLQRLEEAR 378
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
361-950 |
3.37e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.59 E-value: 3.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 361 ALKEKQQHIEQLLAERDLERAEVAKATshicevEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEER 440
Cdd:TIGR00606 273 ALKSRKKQMEKDNSELELKMEKVFQGT------DEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELL 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 441 RKVEDLQFRVE--EESITKGDLETQTQLEHARIGELEQSLLLEKA--QAERLLRELADNRLTTVAEKSRVLQLEEELSlr 516
Cdd:TIGR00606 347 VEQGRLQLQADrhQEHIRARDSLIQSLATRLELDGFERGPFSERQikNFHTLVIERQEDEAKTAAQLCADLQSKERLK-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 517 rgeieelqhcllqsgpppadhpeaaetlrlrerllsaskehQRDSTLLQDKYEHMLKTYQTEVDKLraanEKYAQEVADL 596
Cdd:TIGR00606 425 -----------------------------------------QEQADEIRDEKKGLGRTIELKKEIL----EKKQEELKFV 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 597 KAKVQQATtenmGLMDNWKSKLDSLasdhQKSLEDL-KATLNSGPGAQQKEIGELKalvegikmEHQLELGNLQAKHDLE 675
Cdd:TIGR00606 460 IKELQQLE----GSSDRILELDQEL----RKAERELsKAEKNSLTETLKKEVKSLQ--------NEKADLDRKLRKLDQE 523
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 676 TAMHGKEKEGLRQKLQEVQEELAGLQQ-------------------HWREQLEEQASQHRLELQEAQDQCRDAQLRAQEL 736
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrhsdeltsllgyfPNKKQLEDWLHSKSKEINQTRDRLAKLNKELASL 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 737 EGLDVEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAqsrqEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLS 816
Cdd:TIGR00606 604 EQNKNHINNELESKE---EQLSSYEDKLFDVCGSQDEES----DLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDEN 676
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 817 EETIRmketvegLQDKLNKRDKEVTALTSQmdmlraqvsaLENKCKSGEKKIDSLLKEKRRLEAELEAVSRKthdASGQl 896
Cdd:TIGR00606 677 QSCCP-------VCQRVFQTEAELQEFISD----------LQSKLRLAPDKLKSTESELKKKEKRRDEMLGL---APGR- 735
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....
gi 85662410 897 vhiSQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDD 950
Cdd:TIGR00606 736 ---QSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKV 786
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
406-1016 |
4.22e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 406 QYVAEAEEKLQRARLLVENVrKEKVDLSNQLEEERRKVEDLQ------FRVEEESITKGDLETQtqLEHARIGELEQSLL 479
Cdd:COG4913 215 EYMLEEPDTFEAADALVEHF-DDLERAHEALEDAREQIELLEpirelaERYAAARERLAELEYL--RAALRLWFAQRRLE 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 480 LEKAQAERLLRELADNrlttvaeKSRVLQLEEELSLRRGEIEELQHCLLQSGpppADHPEAAETL--RLRERLLSASKEH 557
Cdd:COG4913 292 LLEAELEELRAELARL-------EAELERLEARLDALREELDELEAQIRGNG---GDRLEQLEREieRLERELEERERRR 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 558 QRDSTLLQ----------DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTEnmglMDNWKSKLDSLAsdHQK 627
Cdd:COG4913 362 ARLEALLAalglplpasaEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRE----LRELEAEIASLE--RRK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 628 S-----LEDLKATLNSGPGAQQKE---IGEL---------------KAL--------------------VEGIKMEHQLE 664
Cdd:COG4913 436 SniparLLALRDALAEALGLDEAElpfVGELievrpeeerwrgaieRVLggfaltllvppehyaaalrwVNRLHLRGRLV 515
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 665 LGNLQAKHDLETAMHGkEKEGLRQKLQ--------EVQEELAGLQQHWR----EQLEEQA-----------SQHRLELQE 721
Cdd:COG4913 516 YERVRTGLPDPERPRL-DPDSLAGKLDfkphpfraWLEAELGRRFDYVCvdspEELRRHPraitragqvkgNGTRHEKDD 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 722 AQDQCRDAQLraqeleGLDVeyrgqAQAIEFLKEQIslaekkmldyEMLQRAEAQSRQEAERLREKLLVAENRLQAAESL 801
Cdd:COG4913 595 RRRIRSRYVL------GFDN-----RAKLAALEAEL----------AELEEELAEAEERLEALEAELDALQERREALQRL 653
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 802 csaqhshviesSDLSEETIRMKETVEGLQDKLNKRDkEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAE 881
Cdd:COG4913 654 -----------AEYSWDEIDVASAEREIAELEAELE-RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKE 721
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 882 LEavsrkthDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIkeQKLKDDIRGLREKLtgl 961
Cdd:COG4913 722 LE-------QAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERELRENLEERI--DALRARLNRAEEEL--- 789
|
650 660 670 680 690 700
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 85662410 962 dkEKSLSE-QRRYSL------IDPASPPELLKLQHQLVST-----EDALRDALNQA--QQVERLVEALR 1016
Cdd:COG4913 790 --ERAMRAfNREWPAetadldADLESLPEYLALLDRLEEDglpeyEERFKELLNENsiEFVADLLSKLR 856
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
378-1016 |
4.65e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 50.84 E-value: 4.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 378 LERAEVAKATSHICEVEKEIAllKAQHEqyVAEAEEKLQRARLLVENVRKEKvdlsNQLEEERRKVE---DLQFRVEEES 454
Cdd:TIGR02169 153 VERRKIIDEIAGVAEFDRKKE--KALEE--LEEVEENIERLDLIIDEKRQQL----ERLRREREKAEryqALLKEKREYE 224
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 455 IT-----KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELA--DNRLTTVAEKSRVLQLEEELSLRRgEIEELQHCL 527
Cdd:TIGR02169 225 GYellkeKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEeiEQLLEELNKKIKDLGEEEQLRVKE-KIGELEAEI 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 528 LQSGPPPADHPEAAETLRLRERLLsaskEHQRDSTLLQ-DKYEHMLKTYQTEVDKLRAANEKYAQEVADLKAKVQQATTE 606
Cdd:TIGR02169 304 ASLERSIAEKERELEDAEERLAKL----EAEIDKLLAEiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 607 NmglmDNWKSKLDSLasdhQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKmEHQLELGNLQAKH-DLETAMHGKEKE- 684
Cdd:TIGR02169 380 F----AETRDELKDY----REKLEKLKREINELKRELDRLQEELQRLSEELA-DLNAAIAGIEAKInELEEEKEDKALEi 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 685 -GLRQKLQEVQEELAGLQQHWR------EQLEEQASQHRLELQEAQdqcrdAQLRAQELEGldveyRGQAQAIEFLKEQI 757
Cdd:TIGR02169 451 kKQEWKLEQLAADLSKYEQELYdlkeeyDRVEKELSKLQRELAEAE-----AQARASEERV-----RGGRAVEEVLKASI 520
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 758 SLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHV----------IESSDLSEETIRMKETVE 827
Cdd:TIGR02169 521 QGVHGTVAQLGSVGERYATAIEVAAGNRLNNVVVEDDAVAKEAIELLKRRKAgratflplnkMRDERRDLSILSEDGVIG 600
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 828 GLQDKLNKRDK---------EVTALTSQMD-----MLRAQVSALENKC--KSG-----EKKIDSLLKEKRRLEAELEAVS 886
Cdd:TIGR02169 601 FAVDLVEFDPKyepafkyvfGDTLVVEDIEaarrlMGKYRMVTLEGELfeKSGamtggSRAPRGGILFSRSEPAELQRLR 680
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 887 RKTHDASGQLVHISQELLRKERSLNELRVLLLEANRHSpgpeRDLSREVHKAEWRikEQKLKDDIRGLREKLTGLDKEKS 966
Cdd:TIGR02169 681 ERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI----GEIEKEIEQLEQE--EEKLKERLEELEEDLSSLEQEIE 754
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|..
gi 85662410 967 --LSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDalNQAQQVERLVEALR 1016
Cdd:TIGR02169 755 nvKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLE 804
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
457-1013 |
4.72e-06 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.99 E-value: 4.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 457 KGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTT--VAEKSRVLQLEEELSLRRGEIEELQHCllqsgppp 534
Cdd:pfam12128 192 EGKFRDVKSMIVAILEDDGVVPPKSRLNRQQVEHWIRDIQAIAgiMKIRPEFTKLQQEFNTLESAELRLSHL-------- 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 535 adHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTEVD-KLRAANEKYAQEVADLKAKVQQATTENMGLMDN 613
Cdd:pfam12128 264 --HFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNgELSAADAAVAKDRSELEALEDQHGAFLDADIET 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 614 WKSKLDSLASdHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLELGNLQAKHDletamhgKEKEGLRQKLQEV 693
Cdd:pfam12128 342 AAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLA-------KIREARDRQLAVA 413
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 694 QEELAGLQQHWREQLE-------EQASQHRLELQEAQDQCRDAQLRAQELEGLdveyRGQAQAIEFLKEQISLAEKKMLD 766
Cdd:pfam12128 414 EDDLQALESELREQLEagklefnEEEYRLKSRLGELKLRLNQATATPELLLQL----ENFDERIERAREEQEAANAEVER 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 767 yemLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSD-----LSEETIRMKETVEGLQDklnkrdkevT 841
Cdd:pfam12128 490 ---LQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQAGtllhfLRKEAPDWEQSIGKVIS---------P 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 842 ALTSQMDMlraqVSALENKCKSGE----------KKID--SLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERS 909
Cdd:pfam12128 558 ELLHRTDL----DPEVWDGSVGGElnlygvkldlKRIDvpEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGE 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 910 LNELRVLLLEANRHSPGPERDLSR--EVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEqrryslidpasppelLKL 987
Cdd:pfam12128 634 LEKASREETFARTALKNARLDLRRlfDEKQSEKDKKNKALAERKDSANERLNSLEAQLKQLD---------------KKH 698
|
570 580
....*....|....*....|....*.
gi 85662410 988 QHQLVSTEDALRDALNQAQQVERLVE 1013
Cdd:pfam12128 699 QAWLEEQKEQKREARTEKQAYWQVVE 724
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
356-1007 |
7.68e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 50.17 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEqyvaeaeeklqrarllvenvrkEKVDLSNQ 435
Cdd:pfam01576 260 NNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELE----------------------DTLDTTAA 317
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 436 LEEERRKvedlqfRVEEESITKGDLETQTQLEHARIGELEQslllEKAQAERLLRELADN--RLTTVAEKSRvLQLEEEL 513
Cdd:pfam01576 318 QQELRSK------REQEVTELKKALEEETRSHEAQLQEMRQ----KHTQALEELTEQLEQakRNKANLEKAK-QALESEN 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 514 SLRRGEIEelqhcLLQSGPPPADHPEAAETLRLRErLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAA-------N 586
Cdd:pfam01576 387 AELQAELR-----TLQQAKQDSEHKRKKLEGQLQE-LQARLSESERQRAELAEK----LSKLQSELESVSSLlneaegkN 456
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 587 EKYAQEVADLKAKVQQATTEnmgLMDNWKSKLDslASDHQKSLEDLKATLNSgpgaQQKEIGELKALVEGIKMEHQLELG 666
Cdd:pfam01576 457 IKLSKDVSSLESQLQDTQEL---LQEETRQKLN--LSTRLRQLEDERNSLQE----QLEEEEEAKRNVERQLSTLQAQLS 527
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 667 NLQAKHDLETAMhgkeKEGLRQKLQEVQEELAGLQQhwreQLEEQASQH-RLELQEAQDQcrdaqlraQELEGLDVEYRG 745
Cdd:pfam01576 528 DMKKKLEEDAGT----LEALEEGKKRLQRELEALTQ----QLEEKAAAYdKLEKTKNRLQ--------QELDDLLVDLDH 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 746 QAQAIEFL-KEQIS----LAEKKMLD---YEMLQRAEAQSR-------------QEAERLREKLLVAENRLQAA-ESLCS 803
Cdd:pfam01576 592 QRQLVSNLeKKQKKfdqmLAEEKAISaryAEERDRAEAEAReketralslaralEEALEAKEELERTNKQLRAEmEDLVS 671
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 804 AQ-----HSHVIESSDLSEETI--RMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSA-LENKCKSGEKKIDSLLKEK 875
Cdd:pfam01576 672 SKddvgkNVHELERSKRALEQQveEMKTQLEELEDELQATEDAKLRLEVNMQALKAQFERdLQARDEQGEEKRRQLVKQV 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 876 RRLEAELEAVSRKthdaSGQLVHISQELlrkERSLNELRVLLLEANRhspGPERDLsREVHKAEWRIKE-QKLKDDIRGL 954
Cdd:pfam01576 752 RELEAELEDERKQ----RAQAVAAKKKL---ELDLKELEAQIDAANK---GREEAV-KQLKKLQAQMKDlQRELEEARAS 820
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 85662410 955 REKLTGLDKEkslSEQRRYSLidpasPPELLKLQHQLVSTEDALRdalnQAQQ 1007
Cdd:pfam01576 821 RDEILAQSKE---SEKKLKNL-----EAELLQLQEDLAASERARR----QAQQ 861
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
407-798 |
7.88e-06 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 50.34 E-value: 7.88e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 407 YVAEAEEKLQRARLLVEnVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLllekAQAE 486
Cdd:COG3096 273 YMRHANERRELSERALE-LRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDYQAASDHLNLVQTAL----RQQE 347
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 487 RLLRELADnrlttvaeksrVLQLEEELSLRRGEIEELQHcllqsgpppadhpeaaETLRLRERLLSASKEHQRDSTLLQD 566
Cdd:COG3096 348 KIERYQED-----------LEELTERLEEQEEVVEEAAE----------------QLAEAEARLEAAEEEVDSLKSQLAD 400
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 567 kYEHMLKT-------YQTEVDKLRAAN----------EKYAQEVADLKAKVQQATTENMGLmdnwKSKL---DSLASDHQ 626
Cdd:COG3096 401 -YQQALDVqqtraiqYQQAVQALEKARalcglpdltpENAEDYLAAFRAKEQQATEEVLEL----EQKLsvaDAARRQFE 475
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 627 KSLEDLKATLNSGPGAQQKEIGElKALVEGIKMEHQLE-LGNLQAK-HDLETAMHgkekegLRQKLQEVQEEL---AGLQ 701
Cdd:COG3096 476 KAYELVCKIAGEVERSQAWQTAR-ELLRRYRSQQALAQrLQQLRAQlAELEQRLR------QQQNAERLLEEFcqrIGQQ 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 702 QHWREQLEEQASQHRLELQEAQDQCRDA-----QLRAQ--ELEGLDVEYRGQA-------QAIEFLKEQI--SLAEKKML 765
Cdd:COG3096 549 LDAAEELEELLAELEAQLEELEEQAAEAveqrsELRQQleQLRARIKELAARApawlaaqDALERLREQSgeALADSQEV 628
|
410 420 430
....*....|....*....|....*....|....*...
gi 85662410 766 DYEMLQ-----RAEAQSRQEAERLREKLLVAENRLQAA 798
Cdd:COG3096 629 TAAMQQllereREATVERDELAARKQALESQIERLSQP 666
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
359-784 |
8.11e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 8.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 359 QEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVR---------KEK 429
Cdd:TIGR00618 437 QRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCplcgscihpNPA 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 430 VDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSllLEKAQAERLLRELADNRLTTVAEK-----S 504
Cdd:TIGR00618 517 RQDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQ--MQEIQQSFSILTQCDNRSKEDIPNlqnitV 594
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 505 RVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKE--HQRDSTLLQDKYEHML---KTYQTEV 579
Cdd:TIGR00618 595 RLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTalHALQLTLTQERVREHAlsiRVLPKEL 674
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 580 DKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKL---DSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEg 656
Cdd:TIGR00618 675 LASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIeeyDREFNEIENASSSLGSDLAAREDALNQSLKELMHQAR- 753
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 657 IKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWReQLEEQASQHRLE-LQEAQDQCrdaQLRAQE 735
Cdd:TIGR00618 754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEIGQEIPSdEDILNLQC---ETLVQE 829
|
410 420 430 440
....*....|....*....|....*....|....*....|....*....
gi 85662410 736 LEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERL 784
Cdd:TIGR00618 830 EEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQLTQEQAKIIQLSDKL 878
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
340-889 |
1.13e-05 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 340 LLTETSSRYARKISGTTALQEALKEKQQHIEQLlaERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAE-AEEKLQRA 418
Cdd:pfam01576 76 ILHELESRLEEEEERSQQLQNEKKKMQQHIQDL--EEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEdQNSKLSKE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 419 RLLVEnvrKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSlllekaqAERLLRELADNRLT 498
Cdd:pfam01576 154 RKLLE---ERISEFTSNLAEEEEKAKSLSKLKNKHEAMISDLEERLKKEEKGRQELEKA-------KRKLEGESTDLQEQ 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 499 TVAEKSRVLQLEEELSLRRgeiEELQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKYEHMLKTYQTE 578
Cdd:pfam01576 224 IAELQAQIAELRAQLAKKE---EELQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEE 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 579 VDKLRAANE--------------KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLK---ATLNSGPG 641
Cdd:pfam01576 301 LEALKTELEdtldttaaqqelrsKREQEVTELKKALEEETRSHEAQLQEMRQKHTQALEELTEQLEQAKrnkANLEKAKQ 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 642 AQQKEIGELKA---LVEGIKMEHQ-------LELGNLQAKHDLETamhgKEKEGLRQKLQEVQEELAGLqQHWREQLEEQ 711
Cdd:pfam01576 381 ALESENAELQAelrTLQQAKQDSEhkrkkleGQLQELQARLSESE----RQRAELAEKLSKLQSELESV-SSLLNEAEGK 455
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 712 ASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEflKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVA 791
Cdd:pfam01576 456 NIKLSKDVSSLESQLQDTQELLQEETRQKLNLSTRLRQLE--DERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKL 533
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 792 ENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKcksgEKKIDSL 871
Cdd:pfam01576 534 EEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQELDDLLVDLDHQRQLVSNLEKK----QKKFDQM 609
|
570 580
....*....|....*....|....*..
gi 85662410 872 LKEKR---------RLEAELEAVSRKT 889
Cdd:pfam01576 610 LAEEKaisaryaeeRDRAEAEAREKET 636
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
617-800 |
1.33e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.00 E-value: 1.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 617 KLDSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVEGIKmehQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEE 696
Cdd:COG4717 64 RKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELE---ELEAELEELREELEKLEKLLQLLPLYQELEALEAE 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 697 LAGLQQHWreqleEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKML-----DYEMLQ 771
Cdd:COG4717 141 LAELPERL-----EELEERLEELRELEEELEELEAELAELQ----------EELEELLEQLSLATEEELqdlaeELEELQ 205
|
170 180
....*....|....*....|....*....
gi 85662410 772 RAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLEN 234
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
358-703 |
1.84e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 48.86 E-value: 1.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQ---HEQYVAEAEEKLQrarLLVENVRKEKVDLSN 434
Cdd:TIGR04523 410 KDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIiknLDNTRESLETQLK---VLSRSINKIKQNLEQ 486
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 435 QLEEERRKVEDLQFRVEEESITKGDLETQTQlEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVlQLEEELS 514
Cdd:TIGR04523 487 KQKELKSKEKELKKLNEEKKELEEKVKDLTK-KISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKE-NLEKEID 564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 515 LRRGEIEELqhcllqsgpppadhpeaaetlrlrerllsasKEHQRDSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEVA 594
Cdd:TIGR04523 565 EKNKEIEEL-------------------------------KQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKIS 613
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 595 DLKAKVQQATTENMGL---MDNWKSKLDSLASDHQKSLEDLKATLNSGPGAqQKEIGELKALVEGIK--MEHQLELGNLQ 669
Cdd:TIGR04523 614 SLEKELEKAKKENEKLssiIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEI-IKKIKESKTKIDDIIelMKDWLKELSLH 692
|
330 340 350
....*....|....*....|....*....|....
gi 85662410 670 AKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQH 703
Cdd:TIGR04523 693 YKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEF 726
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
748-918 |
2.42e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 48.23 E-value: 2.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 748 QAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAqHSHVIESSDLSEETIRMKETVE 827
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQL-LPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 828 GLQDK----------LNKRDKEVTALTSQMDMLRAQVS-ALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQL 896
Cdd:COG4717 150 ELEERleelreleeeLEELEAELAELQEELEELLEQLSlATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEEL 229
|
170 180
....*....|....*....|....
gi 85662410 897 VHISQELLR--KERSLNELRVLLL 918
Cdd:COG4717 230 EQLENELEAaaLEERLKEARLLLL 253
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
645-998 |
2.55e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 645 KEIGELKALVEGIKMEHQL--ELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWRE---------QLEEQAS 713
Cdd:PRK03918 214 SELPELREELEKLEKEVKEleELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEleekvkelkELKEKAE 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 714 QHRlELQEAQDQCRDaqlRAQELEGLDVEYRGQAQAIEflkEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAEN 793
Cdd:PRK03918 294 EYI-KLSEFYEEYLD---ELREIEKRLSRLEEEINGIE---ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 794 RLQAAESLCSAQhshviessdlSEETIRMKETVEGLQDKLNKRDKEVTaltSQMDMLRAQVSALENKCKSGEKKIDSLLK 873
Cdd:PRK03918 367 AKAKKEELERLK----------KRLTGLTPEKLEKELEELEKAKEEIE---EEISKITARIGELKKEIKELKKAIEELKK 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 874 EKRRL---------EAELEAVSRKTHDasgqLVHISQELLRKERSLNELRVLLleanrhspgpeRDLSREVHKAEWRIKE 944
Cdd:PRK03918 434 AKGKCpvcgrelteEHRKELLEEYTAE----LKRIEKELKEIEEKERKLRKEL-----------RELEKVLKKESELIKL 498
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 85662410 945 QKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDpaspPELLKLQHQLVSTEDAL 998
Cdd:PRK03918 499 KELAEQLKELEEKLKKYNLEELEKKAEEYEKLK----EKLIKLKGEIKSLKKEL 548
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
412-972 |
3.03e-05 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 48.36 E-value: 3.03e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 412 EEKLQRARLLVENVRKekvdlsnQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELeQSLLLEKAQAERLLRE 491
Cdd:PRK01156 189 EEKLKSSNLELENIKK-------QIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNEL-SSLEDMKNRYESEIKT 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 492 lADNRlttvaeksrvLQLEEELSLRRGEIEElQHCLLQSGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQdKYEHM 571
Cdd:PRK01156 261 -AESD----------LSMELEKNNYYKELEE-RHMKIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEIN-KYHAI 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 572 LKTYQtEVDKLRAANEKYAQEVADLKAKVQQATTENM---GLMDNWKSKlDSLASDHQKSLEDLKATLNSGPGAQQKEIG 648
Cdd:PRK01156 328 IKKLS-VLQKDYNDYIKKKSRYDDLNNQILELEGYEMdynSYLKSIESL-KKKIEEYSKNIERMSAFISEILKIQEIDPD 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 649 ELKALVEGIK---MEHQLELGNLQAKhdletamhgkeKEGLRQKLQEVQEELAGLQQHWR-----EQLEEQASQHRLELQ 720
Cdd:PRK01156 406 AIKKELNEINvklQDISSKVSSLNQR-----------IRALRENLDELSRNMEMLNGQSVcpvcgTTLGEEKSNHIINHY 474
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 721 EAQDQCRDAQLRAQELE--GLDVEYRGQAQAIEFL-KEQIslaEKKMLDYEMLQRAEAQSRQEAERLREkLLVAENRLQA 797
Cdd:PRK01156 475 NEKKSRLEEKIREIEIEvkDIDEKIVDLKKRKEYLeSEEI---NKSINEYNKIESARADLEDIKIKINE-LKDKHDKYEE 550
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 798 AESLCSAQHSHVIES---SDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKE 874
Cdd:PRK01156 551 IKNRYKSLKLEDLDSkrtSWLNALAVISLIDIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANN 630
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 875 KRRLEAELEAVSRKTHDASGQLVHISQELLRK---ERSLNELRVLLLEANRHSPGPERDLSR-EVHKAEWRIKEQKLKDD 950
Cdd:PRK01156 631 LNNKYNEIQENKILIEKLRGKIDNYKKQIAEIdsiIPDLKEITSRINDIEDNLKKSRKALDDaKANRARLESTIEILRTR 710
|
570 580
....*....|....*....|..
gi 85662410 951 IRGLREKLTglDKEKSLSEQRR 972
Cdd:PRK01156 711 INELSDRIN--DINETLESMKK 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
357-524 |
3.32e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.45 E-value: 3.32e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 357 ALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQL 436
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARR----IRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 437 EEERRKVEDL---QFRVEEESITKGDLETQTQLEHARIGELEQSLLLE-KAQAERL---LRELADNRLTTVAEKSRVLQL 509
Cdd:COG4942 100 EAQKEELAELlraLYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPArREQAEELradLAELAALRAELEAERAELEAL 179
|
170
....*....|....*
gi 85662410 510 EEELSLRRGEIEELQ 524
Cdd:COG4942 180 LAELEEERAALEALK 194
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
349-972 |
4.17e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 4.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 349 ARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLKAQH--EQYVAEAEEKLQRArllvENVR 426
Cdd:TIGR00618 289 ARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRrlLQTLHSQEIHIRDA----HEVA 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 427 KEKVDLSNQLEEERRKVEDLQfrveeesitkGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKsrv 506
Cdd:TIGR00618 365 TSIREISCQQHTLTQHIHTLQ----------QQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKK--- 431
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 507 lqlEEELSLRRGEIEELQhcllqsgpppadHPEAAETLRLRERLLSASKEHQRDST-LLQDKyehmlKTYQTEVDKLRAA 585
Cdd:TIGR00618 432 ---QQELQQRYAELCAAA------------ITCTAQCEKLEKIHLQESAQSLKEREqQLQTK-----EQIHLQETRKKAV 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 586 NEKYAQEVADLKAKVQQATTE---------NMGLMDNWKSKLDSLASDHQKSLEDLKATLNSgpgaqqkEIGELKALVEG 656
Cdd:TIGR00618 492 VLARLLELQEEPCPLCGSCIHpnparqdidNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTS-------ERKQRASLKEQ 564
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 657 IKMEHQLELGNLQAKHDLETAMhgkekEGLRQKLQEVQEELAGLQQHWREQLEEQaSQHRLELQEAQDQCRDAQlraqel 736
Cdd:TIGR00618 565 MQEIQQSFSILTQCDNRSKEDI-----PNLQNITVRLQDLTEKLSEAEDMLACEQ-HALLRKLQPEQDLQDVRL------ 632
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 737 egldveYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEAERLREKllvAENRLQAAESLcSAQHSHVIESSDLS 816
Cdd:TIGR00618 633 ------HLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLAS---RQLALQKMQSE-KEQLTYWKEMLAQC 702
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 817 EETIRMKETVEGLQDKLnkRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEK-----RRLEAELEAVSRKThd 891
Cdd:TIGR00618 703 QTLLRELETHIEEYDRE--FNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARteahfNNNEEVTAALQTGA-- 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 892 asgQLVHISQELLRKERSLNELRVLL--LEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSE 969
Cdd:TIGR00618 779 ---ELSHLAAEIQFFNRLREEDTHLLktLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYE 855
|
...
gi 85662410 970 QRR 972
Cdd:TIGR00618 856 ECS 858
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
595-913 |
4.49e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.60 E-value: 4.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 595 DLKAKVQQATTENMGLMDNWKSKLDSLAS--DHQKSLEDLKATLNSGPgAQQKEIgelkalvegikmehQLELGNLQAKH 672
Cdd:PRK11281 46 DALNKQKLLEAEDKLVQQDLEQTLALLDKidRQKEETEQLKQQLAQAP-AKLRQA--------------QAELEALKDDN 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 673 DlETAMHGKEKEGLRQkLQEVQEELAGLQQHWREQLEEQASQ---HRLELQEAQDQCRDAQLRAQELegldveyRGQAQA 749
Cdd:PRK11281 111 D-EETRETLSTLSLRQ-LESRLAQTLDQLQNAQNDLAEYNSQlvsLQTQPERAQAALYANSQRLQQI-------RNLLKG 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 750 IEFLKEQISLAEKKMLDYEmLQRAEAQSRqeaerLREKLLVAENRLQaaeSLCSAQHShviessDLSEETIRMKETVEGL 829
Cdd:PRK11281 182 GKVGGKALRPSQRVLLQAE-QALLNAQND-----LQRKSLEGNTQLQ---DLLQKQRD------YLTARIQRLEHQLQLL 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 830 QDKLNKRDKEVTaltsqmdmlRAQVSALENKCKSGEKKIDSLLKekrrleAELEAVSRkthdasgqlvhISQELLRKERS 909
Cdd:PRK11281 247 QEAINSKRLTLS---------EKTVQEAQSQDEAARIQANPLVA------QELEINLQ-----------LSQRLLKATEK 300
|
....
gi 85662410 910 LNEL 913
Cdd:PRK11281 301 LNTL 304
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
689-860 |
5.44e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 45.69 E-value: 5.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 689 KLQEVQEELAGLQqHWREQLEEQASQHRLELQEAQDQCRDAQlraQELEGLDVEYRGQAQAIEFLKEQISLAEKKML--- 765
Cdd:COG1579 11 DLQELDSELDRLE-HRLKELPAELAELEDELAALEARLEAAK---TELEDLEKEIKRLELEIEEVEARIKKYEEQLGnvr 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 766 ---DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESlcsaqhshviessDLSEETIRMKETVEGLQDKLNKRDKEVTA 842
Cdd:COG1579 87 nnkEYEALQKEIESLKRRISDLEDEILELMERIEELEE-------------ELAELEAELAELEAELEEKKAELDEELAE 153
|
170
....*....|....*...
gi 85662410 843 LTSQMDMLRAQVSALENK 860
Cdd:COG1579 154 LEAELEELEAEREELAAK 171
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
674-897 |
6.20e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 6.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 674 LETAMHGKEKEGLRQKLQEVQEELAGLQQHWR--EQLEEQAS----------QHRLELQEAQDQCRDAQLRAQELEGLD- 740
Cdd:PRK04863 887 LADETLADRVEEIREQLDEAEEAKRFVQQHGNalAQLEPIVSvlqsdpeqfeQLKQDYQQAQQTQRDAKQQAFALTEVVq 966
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 741 -VEYRGQAQAIEFLKEQISLAEKkmldyemLQRAEAQSRQEAERLREKLLVAENRL-QAAESLCSAQHSHVIESSDLSEE 818
Cdd:PRK04863 967 rRAHFSYEDAAEMLAKNSDLNEK-------LRQRLEQAEQERTRAREQLRQAQAQLaQYNQVLASLKSSYDAKRQMLQEL 1039
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 819 TIRMKET----VEGLQDKLNKRDKEvtaltsqmdmLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASG 894
Cdd:PRK04863 1040 KQELQDLgvpaDSGAEERARARRDE----------LHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMRE 1109
|
...
gi 85662410 895 QLV 897
Cdd:PRK04863 1110 QVV 1112
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
340-744 |
6.29e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.02 E-value: 6.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 340 LLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDL---ERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQ 416
Cdd:pfam05483 381 IITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKlldEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLT 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 417 RARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADnr 496
Cdd:pfam05483 461 AIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIEN-- 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 497 lttvaeksrvlqLEEELSLRRGEIEELQHCLLQSGpppadhpeaaETLRLRerlLSASKEHQRDSTLLQDKYEHMLKTYQ 576
Cdd:pfam05483 539 ------------LEEKEMNLRDELESVREEFIQKG----------DEVKCK---LDKSEENARSIEYEVLKKEKQMKILE 593
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 577 TEVDKLRAANEKYAQEVADL----KAKVQQATTENMGL-------------MDNWKSKLDSLASDHQKSLEDLKATLNSG 639
Cdd:pfam05483 594 NKCNNLKKQIENKNKNIEELhqenKALKKKGSAENKQLnayeikvnkleleLASAKQKFEEIIDNYQKEIEDKKISEEKL 673
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 640 PGaqqkEIGELKALV-EGIKMEHQLELgNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQHWREQ------LEEQA 712
Cdd:pfam05483 674 LE----EVEKAKAIAdEAVKLQKEIDK-RCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQssakaaLEIEL 748
|
410 420 430
....*....|....*....|....*....|..
gi 85662410 713 SQHRLELQEAQDQCrdaQLRAQELEGLDVEYR 744
Cdd:pfam05483 749 SNIKAELLSLKKQL---EIEKEEKEKLKMEAK 777
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
379-511 |
1.05e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 46.02 E-value: 1.05e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 379 ERAEVAKAtshicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEKvDLSNQLEEERRKVEDLQFR----VEEES 454
Cdd:COG2268 199 RDARIAEA-----EAERETEIAIAQANREAEEAELEQEREIETARIAEAEA-ELAKKKAEERREAETARAEaeaaYEIAE 272
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 85662410 455 ITKgDLETQTQLEharIGELEQSLLLEKAQAERLLREL-ADNRLTTVAEKSRVLQLEE 511
Cdd:COG2268 273 ANA-EREVQRQLE---IAEREREIELQEKEAEREEAELeADVRKPAEAEKQAAEAEAE 326
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
406-914 |
1.28e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.97 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 406 QYVAEAEEKLQRARLLVENVRKEKVDLS------NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLL 479
Cdd:pfam10174 185 RRIAEAEMQLGHLEVLLDQKEKENIHLReelhrrNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGL 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 480 LEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRlrERLlsASKEhQR 559
Cdd:pfam10174 265 LHTEDREEEIKQMEVYKSHSKFMKNKIDQLKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLK--ESL--TAKE-QR 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 560 DSTLlqdkyehmlktyQTEVDKLRAANE----------KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLasdhQKSL 629
Cdd:pfam10174 340 AAIL------------QTEVDALRLRLEekesflnkktKQLQDLTEEKSTLAGEIRDLKDMLDVKERKINVL----QKKI 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 630 EDLKATLNSgpgaQQKEIGELKALVEGIK------------MEHQLE-----LGNLQAKHDLETAMHGKEKEGLRQKLQE 692
Cdd:pfam10174 404 ENLQEQLRD----KDKQLAGLKERVKSLQtdssntdtalttLEEALSekeriIERLKEQREREDRERLEELESLKKENKD 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 693 VQEELAGLQQHWREQ------LEEQAS--------------QHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQaief 752
Cdd:pfam10174 480 LKEKVSALQPELTEKesslidLKEHASslassglkkdsklkSLEIAVEQKKEECSKLENQLKKAHNAEEAVRTNPE---- 555
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 753 LKEQISLAEKKMLDYemlqRAEAQSRQ-EAERLREKLLVAENRlqaaeslcsaQHSHVIESSDLSEETIRM--KETVEGL 829
Cdd:pfam10174 556 INDRIRLLEQEVARY----KEESGKAQaEVERLLGILREVENE----------KNDKDKKIAELESLTLRQmkEQNKKVA 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 830 QDKLNKRDKEVTALTSQMDMLRAQVSALENkckSGEKKIDSLLKEKRRLEAELEAVsrKTHDASGQlvhisQELLRKERS 909
Cdd:pfam10174 622 NIKHGQQEMKKKGAQLLEEARRREDNLADN---SQQLQLEELMGALEKTRQELDAT--KARLSSTQ-----QSLAEKDGH 691
|
....*
gi 85662410 910 LNELR 914
Cdd:pfam10174 692 LTNLR 696
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
717-975 |
1.28e-04 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 45.90 E-value: 1.28e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 717 LELQEAQDQCRDAQLRAQELEgldvEYRGQAQAIEFLKE----QISLAEKKMLDYEMLQRAEAQSRQEAERLREKLLVAE 792
Cdd:pfam07111 53 LELEGSQALSQQAELISRQLQ----ELRRLEEEVRLLREtslqQKMRLEAQAMELDALAVAEKAGQAEAEGLRAALAGAE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 793 nrlQAAESLCSAQHSHVIESSDLSEETirmketvegLQDKLNKRDKEVTALTSQMDMLRAQVSALENKcKSGEKKidsll 872
Cdd:pfam07111 129 ---MVRKNLEEGSQRELEEIQRLHQEQ---------LSSLTQAHEEALSSLTSKAEGLEKSLNSLETK-RAGEAK----- 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 873 kekrrleaELEAVSRKTHDASGQLVHISQELlrkerslnELRVLLLEANRHSPGPErdLSREVHKAEWRIKEQKLKDDIR 952
Cdd:pfam07111 191 --------QLAEAQKEAELLRKQLSKTQEEL--------EAQVTLVESLRKYVGEQ--VPPEVHSQTWELERQELLDTMQ 252
|
250 260
....*....|....*....|...
gi 85662410 953 GLREKLTGLDKEKSLSEQRRYSL 975
Cdd:pfam07111 253 HLQEDRADLQATVELLQVRVQSL 275
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
685-1013 |
1.68e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.80 E-value: 1.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 685 GLRQKLQEVQEELaglqqhwrEQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDveyrgqaQAIEFLKEQISLAEKKM 764
Cdd:PRK02224 210 GLESELAELDEEI--------ERYEEQREQARETRDEADEVLEEHEERREELETLE-------AEIEDLRETIAETERER 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 765 ldyEMLQRAEAQSRQEAERLREKL--LVAENRLQAAESLCSAQHSHVIESSD-----------------------LSEET 819
Cdd:PRK02224 275 ---EELAEEVRDLRERLEELEEERddLLAEAGLDDADAEAVEARREELEDRDeelrdrleecrvaaqahneeaesLREDA 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 820 IRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHI 899
Cdd:PRK02224 352 DDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAEL 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 900 SQELLRKERSLNELRVLLLEANrhSPGPERDLSREVHK---AEWRIKEQKLKDDIRGLREKLTGLDKEkslseqrryslI 976
Cdd:PRK02224 432 EATLRTARERVEEAEALLEAGK--CPECGQPVEGSPHVetiEEDRERVEELEAELEDLEEEVEEVEER-----------L 498
|
330 340 350
....*....|....*....|....*....|....*..
gi 85662410 977 DPASppellklqhQLVSTEDALRDALNQAQQVERLVE 1013
Cdd:PRK02224 499 ERAE---------DLVEAEDRIERLEERREDLEELIA 526
|
|
| RecN |
COG0497 |
DNA repair ATPase RecN [Replication, recombination and repair]; |
660-892 |
2.01e-04 |
|
DNA repair ATPase RecN [Replication, recombination and repair];
Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 45.07 E-value: 2.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 660 EHQLEL-----GNLQAKHDLETAmhgkekeglRQKLQEVQEELAGLQQhwreqlEEQASQHRLELQEAQ-DQCRDAQLRA 733
Cdd:COG0497 141 DAQRELldafaGLEELLEEYREA---------YRAWRALKKELEELRA------DEAERARELDLLRFQlEELEAAALQP 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 734 QELEGLDVEYRGQAQAiEFLKEQISLAekkmldYEMLQRAE--AQSR-QEAERLREKLLVAENRLQ-AAESLCSAQhshv 809
Cdd:COG0497 206 GEEEELEEERRRLSNA-EKLREALQEA------LEALSGGEggALDLlGQALRALERLAEYDPSLAeLAERLESAL---- 274
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 810 IESSDLSEETIRMKETVEG-------LQDKLN-------KRDKEVTALTSQMDMLRAQVSALENkcksGEKKIDSLLKEK 875
Cdd:COG0497 275 IELEEAASELRRYLDSLEFdperleeVEERLAllrrlarKYGVTVEELLAYAEELRAELAELEN----SDERLEELEAEL 350
|
250
....*....|....*..
gi 85662410 876 RRLEAELEAVSRKTHDA 892
Cdd:COG0497 351 AEAEAELLEAAEKLSAA 367
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
680-1011 |
2.02e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.73 E-value: 2.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 680 GKEKEGLRQKLQEVQEELAGLQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISL 759
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 760 AEKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIES------------SDLSEETIRMKETVE 827
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEElksellklerrkVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 828 GLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKidsLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKE 907
Cdd:pfam02463 325 KAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKL---QEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 908 RSLNELRVLLLEANRhspgpERDLSREVHKAEWRIKEqKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPELLKL 987
Cdd:pfam02463 402 EEEKEAQLLLELARQ-----LEDLLKEEKKEELEILE-EEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLK 475
|
330 340
....*....|....*....|....
gi 85662410 988 QHQLVSTEDALRDALNQAQQVERL 1011
Cdd:pfam02463 476 ETQLVKLQEQLELLLSRQKLEERS 499
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
403-799 |
2.69e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 2.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 403 QHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLeEERRKVEdlqfrvEEESITKGDLETQTQL--EHARIGeLEQSLLL 480
Cdd:pfam17380 279 QHQKAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE------EAEKARQAEMDRQAAIyaEQERMA-MEREREL 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 481 EKAQAERLLRELADNRLTTVA-EKSRVLQLeEELSLRRGEIEElqhcllqsgpppadhpeaaetlRLRERLlsaskEHQR 559
Cdd:pfam17380 351 ERIRQEERKRELERIRQEEIAmEISRMREL-ERLQMERQQKNE----------------------RVRQEL-----EAAR 402
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 560 DSTLLQDKYEHMLKTYQTEVDKLRAANEKYAQEvadlkakvqqattenmglmdnwksKLDSLASDHQKSLEDLKatlnsg 639
Cdd:pfam17380 403 KVKILEEERQRKIQQQKVEMEQIRAEQEEARQR------------------------EVRRLEEERAREMERVR------ 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 640 pgaqqkeigelkalVEGIKMEHQLELgnlqakhdletaMHGKEKEGLRQKLQ--EVQEELAGLQQHWREQLEEQASQHRL 717
Cdd:pfam17380 453 --------------LEEQERQQQVER------------LRQQEEERKRKKLEleKEKRDRKRAEEQRRKILEKELEERKQ 506
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 718 ELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAEAQSRQEA-ERLREKL-LVAENRL 795
Cdd:pfam17380 507 AMIEEERKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAmEREREMMrQIVESEK 586
|
....
gi 85662410 796 QAAE 799
Cdd:pfam17380 587 ARAE 590
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
659-800 |
2.93e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 2.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 659 MEHQLELGNLQAKhDLETAMHGKEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEG 738
Cdd:COG1579 3 PEDLRALLDLQEL-DSELDRLEHRLKELPAELAELEDELAALEAR-LEAAKTELEDLEKEIKRLELEIEEVEARIKKYEE 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 85662410 739 -LDV-----EYRGQAQAIEFLKEQISLAEKKMLDY----EMLQRAEAQSRQEAERLREKLLVAENRLQAAES 800
Cdd:COG1579 81 qLGNvrnnkEYEALQKEIESLKRRISDLEDEILELmeriEELEEELAELEAELAELEAELEEKKAELDEELA 152
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
350-846 |
2.98e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 2.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 350 RKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKAtshicevekeiallKAQHEQYVAEAEEKLQRarlLVENVRKEK 429
Cdd:pfam05483 307 RSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKA--------------KAAHSFVVTEFEATTCS---LEELLRTEQ 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 430 VDLSNQLEEERRKVEDLQFRVEE-ESITKGDLETQTQLEHAR--IGElEQSLLLEKAQAERLLRELadnrlttvaeKSRV 506
Cdd:pfam05483 370 QRLEKNEDQLKIITMELQKKSSElEEMTKFKNNKEVELEELKkiLAE-DEKLLDEKKQFEKIAEEL----------KGKE 438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 507 LQLEEELSLRRGEIEELQHCLLQSGPPPADHPEAAETLRL---RERLLSASKEHQRDSTLLQDK--------YEHMLKTY 575
Cdd:pfam05483 439 QELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTeleKEKLKNIELTAHCDKLLLENKeltqeasdMTLELKKH 518
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 576 QTEVDKLRAANEKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLEDLKaTLNSGPGAQQKEIGELKALVE 655
Cdd:pfam05483 519 QEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENAR-SIEYEVLKKEKQMKILENKCN 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 656 GIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQ------KLQEVQEELAGLQQHWREQL---EEQASQHRLELQEAQDQC 726
Cdd:pfam05483 598 NLKKQIENKNKNIEELHQENKALKKKGSAENKQlnayeiKVNKLELELASAKQKFEEIIdnyQKEIEDKKISEEKLLEEV 677
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 727 RDAQLRAQELEGLDVEYRGQAQaiEFLKEQISLAEKKMLDYEMLqraeaqsrqeAERLREKLLVAENRLQAAESLCSAQH 806
Cdd:pfam05483 678 EKAKAIADEAVKLQKEIDKRCQ--HKIAEMVALMEKHKHQYDKI----------IEERDSELGLYKNKEQEQSSAKAALE 745
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 85662410 807 shvIESSDLSEETIRMKETVE---GLQDKLNKRDKEVTALTSQ 846
Cdd:pfam05483 746 ---IELSNIKAELLSLKKQLEiekEEKEKLKMEAKENTAILKD 785
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
356-513 |
3.02e-04 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 44.48 E-value: 3.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 356 TALQEALKEKQQHIEQLLAERDLERAEVAKATSHIcEVEKEIALLKAQHEQYVAEAEEKLQRAR------LLVENVRKEK 429
Cdd:COG2268 212 TEIAIAQANREAEEAELEQEREIETARIAEAEAEL-AKKKAEERREAETARAEAEAAYEIAEANaerevqRQLEIAERER 290
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 430 VDLSNQLEEERRKVEdlqfrVEEESITKGDLETQTQLEHARiGELEQSLLLEKAQAE--RLLRElADNRLTTVAEKSRVL 507
Cdd:COG2268 291 EIELQEKEAEREEAE-----LEADVRKPAEAEKQAAEAEAE-AEAEAIRAKGLAEAEgkRALAE-AWNKLGDAAILLMLI 363
|
....*.
gi 85662410 508 QLEEEL 513
Cdd:COG2268 364 EKLPEI 369
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
358-523 |
3.26e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.37 E-value: 3.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 358 LQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVEKEIallkAQHEQYVAEAEEKLQRARLLVENVRKEK--VDLSNQ 435
Cdd:COG1579 22 LEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEI----KRLELEIEEVEARIKKYEEQLGNVRNNKeyEALQKE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 436 LEEERRKVEDLqfrveEESItkgdLETQTQLEHAR--IGELEQSLLLEKAQAERLLRELadnrlttvaeKSRVLQLEEEL 513
Cdd:COG1579 98 IESLKRRISDL-----EDEI----LELMERIEELEeeLAELEAELAELEAELEEKKAEL----------DEELAELEAEL 158
|
170
....*....|
gi 85662410 514 SLRRGEIEEL 523
Cdd:COG1579 159 EELEAEREEL 168
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
648-971 |
3.53e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 3.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 648 GELKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEgLRQKLQEVQEELAGLQQhwREQLEEQASQHRLELQEAQDQCR 727
Cdd:TIGR00618 194 GKAELLTLRSQLLTLCTPCMPDTYHERKQVLEKELKH-LREALQQTQQSHAYLTQ--KREAQEEQLKKQQLLKQLRARIE 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 728 DAQLRAQELEGLDVEYRGQAQAIEFLKEQISLAEKKMLDYEMLQRAeaqsrQEAERLREKLLVAENRLQAAESlcSAQHS 807
Cdd:TIGR00618 271 ELRAQEAVLEETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTEL-----QSKMRSRAKLLMKRAAHVKQQS--SIEEQ 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 808 HVIESSDLSEEtIRMKETVEGLQDKLNKRDKEvTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSr 887
Cdd:TIGR00618 344 RRLLQTLHSQE-IHIRDAHEVATSIREISCQQ-HTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFR- 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 888 kthDASGQLVHISQELLRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIKEQKLKDDIRgLREKLTGLDKEKSL 967
Cdd:TIGR00618 421 ---DLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIH-LQETRKKAVVLARL 496
|
....
gi 85662410 968 SEQR 971
Cdd:TIGR00618 497 LELQ 500
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
349-795 |
6.02e-04 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 43.96 E-value: 6.02e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 349 ARKISGTTALQEALKE-KQQHIEQLLAERDLERAEVAKATSHICEVEKEIALLK--AQHEQYVAEAEEKLQ----RARLL 421
Cdd:pfam05557 2 AELIESKARLSQLQNEkKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKriRLLEKREAEAEEALReqaeLNRLK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 422 VENV------RKEKVD-----------LSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQslllEKAQ 484
Cdd:pfam05557 82 KKYLealnkkLNEKESqladareviscLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQ----LRQN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 485 AERLLRELADNRLttvaeksRVLQLEEELSLRRGEIEELQHCllqsgppPADHPEAAETLRLRERLLSASK---EHQRDS 561
Cdd:pfam05557 158 LEKQQSSLAEAEQ-------RIKELEFEIQSQEQDSEIVKNS-------KSELARIPELEKELERLREHNKhlnENIENK 223
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 562 TLLQDKYEHM------LKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSLASDhQKSLEDLKAT 635
Cdd:pfam05557 224 LLLKEEVEDLkrklerEEKYREEAATLELEKEKLEQELQSWV-KLAQDTGLNLRSPEDLSRRIEQLQQR-EIVLKEENSS 301
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 636 LNSGPGAQQKEIGEL---------KALVEGIKMEHQLELGN-LQAKHDLETamhgKEKEGLRQKLQEVQEELAglqqhwr 705
Cdd:pfam05557 302 LTSSARQLEKARRELeqelaqylkKIEDLNKKLKRHKALVRrLQRRVLLLT----KERDGYRAILESYDKELT------- 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 706 eqLEEQASQHRLELQEAQDQCRDAQLRAQELE-GLDV------EYRGQAQAIE----FLKEQISLAEKKML--DYEMLQR 772
Cdd:pfam05557 371 --MSNYSPQLLERIEEAEDMTQKMQAHNEEMEaQLSVaeeelgGYKQQAQTLErelqALRQQESLADPSYSkeEVDSLRR 448
|
490 500
....*....|....*....|...
gi 85662410 773 AEAQSRQEAERLREKLLVAENRL 795
Cdd:pfam05557 449 KLETLELERQRLREQKNELEMEL 471
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
651-1016 |
6.74e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 6.74e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 651 KALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQEVQEELAGLQQhwreQLEEQASQHRLELQEAQDQCRDAQ 730
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQM----ERDAMADIRRRESQSQEDLRNQLQ 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 731 LRAQELEgldveyrgqaqAIEFLKEqislaekkmldyEMLQRAEAQsrqeAERLREKLLVAENRLQAAESLC----SAQH 806
Cdd:pfam15921 149 NTVHELE-----------AAKCLKE------------DMLEDSNTQ----IEQLRKMMLSHEGVLQEIRSILvdfeEASG 201
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 807 SHVIESSDLSeeTIRMKETVEGLQDKLNKRDKEVTALTSQM----DMLRAQVSALENK----CKSGEKKIDSLLKEKrrl 878
Cdd:pfam15921 202 KKIYEHDSMS--TMHFRSLGSAISKILRELDTEISYLKGRIfpveDQLEALKSESQNKiellLQQHQDRIEQLISEH--- 276
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 879 EAELEAVSRKTHDASGQL------VHISQELLRKERSL------------NELRVLLLEANRHSPGPERDLSREVHKAEW 940
Cdd:pfam15921 277 EVEITGLTEKASSARSQAnsiqsqLEIIQEQARNQNSMymrqlsdlestvSQLRSELREAKRMYEDKIEELEKQLVLANS 356
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 941 RIKEQK------------LKDDIRGLREKLTGLDKEKSLSEQRRYSLIDPASPPELlklqhqlvsTEDALRDALN----Q 1004
Cdd:pfam15921 357 ELTEARterdqfsqesgnLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSI---------TIDHLRRELDdrnmE 427
|
410
....*....|..
gi 85662410 1005 AQQVERLVEALR 1016
Cdd:pfam15921 428 VQRLEALLKAMK 439
|
|
| GOLGA2L5 |
pfam15070 |
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein ... |
682-865 |
8.42e-04 |
|
Putative golgin subfamily A member 2-like protein 5; The function of the GOLGA2L5 protein family remains unknown. This family of proteins is thought to be found in the Golgi apparatus of eukaryotes.
Pssm-ID: 464485 [Multi-domain] Cd Length: 521 Bit Score: 43.13 E-value: 8.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 682 EKEGL-RQKLQEVQeeLAGLQQHWREQLEEQASQHRLELQEAQDQCRDA-----QLRAQ------ELEGLDVEyrGQAQA 749
Cdd:pfam15070 254 EKEELhKQYLLQTQ--LMDRLQHEEVQGKVAAEMARQELQETQERLEALtqqnqQLQAQlsllanPGEGDGLE--SEEEE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 750 IEFLKEQISLAE-----KKMLDYemLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSA---QHSHVIESSDLSEETIR 821
Cdd:pfam15070 330 EEAPRPSLSIPEdfesrEAMVAF--FNSALAQAEEERAELRRQLKEQKRRCRRLAQQAAPaqeEPEHEAHAPGTGGDSVP 407
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 85662410 822 MkETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKC--KSGE 865
Cdd:pfam15070 408 V-EVHQALQVAMEKLQSRFTELMQEKADLKERVEELEHRCiqLSGE 452
|
|
| TTKRSYEDQ |
pfam10212 |
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a ... |
683-871 |
9.38e-04 |
|
Predicted coiled-coil domain-containing protein; This is the C-terminal 500 amino acids of a family of proteins with a predicted coiled-coil domain conserved from nematodes to humans. It carries a characteriztic TTKRSYEDQ sequence-motif. The function is not known.
Pssm-ID: 463001 Cd Length: 523 Bit Score: 42.89 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 683 KEGLRQKLQEVQEELAGLQQ---HWreQLEEQASQHRLELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEFLKEQISL 759
Cdd:pfam10212 304 REGLAQQVQQSQEKIAKLEQekeHW--MLEAQLLKIKLEKENQRIADLEKQLLKGSTSGQLPELVQSKATLPLTAKQGSE 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 760 AEKKMLDY--------EMLQRAEAQSRQEAERLREKLL-------VAE--NRLQAAESlcSAQHSH-----------VIE 811
Cdd:pfam10212 382 ASSISEKEptpstsliGMLTVTTDSEESSDEESREQLIkshymarIAEltSQLQLADS--KAVHFHaecralakrlaLAE 459
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 85662410 812 SS--DLSEETIRMKETVEGLQDKL--NKRDKEvtaltSQMDMLRAQVSALENKCKSGEKKIDSL 871
Cdd:pfam10212 460 KSkeSLTEELKLANQNISRLQDELttTKRSYE-----DQLSMMSDHLCSMNETLTKQREEIDTL 518
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
824-1007 |
1.00e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 824 ETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQEL 903
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 904 LRKERSLNELRVLLLEANRHSPGPERDLSREVHKAEWRIK-----EQKLKDDIRGLREKLTGLDKEKSLSEQRRYSLIDP 978
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQylkylAPARREQAEELRADLAELAALRAELEAERAELEAL 179
|
170 180
....*....|....*....|....*....
gi 85662410 979 ASppELLKLQHQLVSTEDALRDALNQAQQ 1007
Cdd:COG4942 180 LA--ELEEERAALEALKAERQKLLARLEK 206
|
|
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
341-524 |
1.01e-03 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 42.49 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 341 LTETSSRYARKISGTTALQEALKEKQQhieqlLAERDLE--RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEkLQRA 418
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQ-----VTQKNLEhsKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITE-LSCV 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 419 RLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEEsitKGDLETQTQLEHARIGELEQSLllekaqaERLLRELADNRLT 498
Cdd:pfam15905 235 SEQVEKYKLDIAQLEELLKEKNDEIESLKQSLEEK---EQELSKQIKDLNEKCKLLESEK-------EELLREYEEKEQT 304
|
170 180
....*....|....*....|....*.
gi 85662410 499 TVAEksrVLQLEEELSLRRGEIEELQ 524
Cdd:pfam15905 305 LNAE---LEELKEKLTLEEQEHQKLQ 327
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
739-1009 |
1.16e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 43.08 E-value: 1.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 739 LDVEYRG----QAQAI------EFLKEQISLAekkmldYEMLQRAEAQSRQEAERLREKLLVAENRLQAAEslcsAQHSH 808
Cdd:COG3206 138 IEISYTSpdpeLAAAVanalaeAYLEQNLELR------REEARKALEFLEEQLPELRKELEEAEAALEEFR----QKNGL 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 809 ViessDLSEETIRMKETVEGLQDKLNkrdkevtALTSQMDMLRAQVSALENKCKSGEKKIDSLLkekrrleaeleavsrk 888
Cdd:COG3206 208 V----DLSEEAKLLLQQLSELESQLA-------EARAELAEAEARLAALRAQLGSGPDALPELL---------------- 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 889 thdASGQLVHISQELLRKERSLNELRVLLLEANrhspgPE-RDLSREVHKAEWRIKEQ------KLKDDIRGLREKLTGL 961
Cdd:COG3206 261 ---QSPVIQQLRAQLAELEAELAELSARYTPNH-----PDvIALRAQIAALRAQLQQEaqrilaSLEAELEALQAREASL 332
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 85662410 962 dkEKSLSEQRRYSLIDPASPPELLKLQHQLVSTEDALRDALNQAQQVE 1009
Cdd:COG3206 333 --QAQLAQLEARLAELPELEAELRRLEREVEVARELYESLLQRLEEAR 378
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
380-995 |
1.32e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.81 E-value: 1.32e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 380 RAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQrarllvenvrkekvDLSNQLEEERRKVEDLQFRVE--EESITK 457
Cdd:pfam05557 1 RAELIESKARLSQLQNEKKQMELEHKRARIELEKKAS--------------ALKRQLDRESDRNQELQKRIRllEKREAE 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 458 GDLETQTQLEHARIG----ELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEE-ELSLRRGEIEELQHCLlqsgp 532
Cdd:pfam05557 67 AEEALREQAELNRLKkkylEALNKKLNEKESQLADAREVISCLKNELSELRRQIQRAElELQSTNSELEELQERL----- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 533 pPADHPEAAETLRLRERLLSASKEHQRDSTLLQDkYEHMLKTYQTEVDKLRAANEKYAQeVADLKAKVQQATTENMGLMD 612
Cdd:pfam05557 142 -DLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKE-LEFEIQSQEQDSEIVKNSKSELAR-IPELEKELERLREHNKHLNE 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 613 NWKSKLDSlasdhQKSLEDLKATLNSGPGAQQkeigelKALVEGIKMEHQLELGNLQAKHDLETAMHGKEKEGLRQKLQE 692
Cdd:pfam05557 219 NIENKLLL-----KEEVEDLKRKLEREEKYRE------EAATLELEKEKLEQELQSWVKLAQDTGLNLRSPEDLSRRIEQ 287
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 693 VQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaqaiEFLKEQISLAEKkmldyemLQR 772
Cdd:pfam05557 288 LQQREIVLKEE-NSSLTSSARQLEKARRELEQELAQYLKKIEDLN-------------KKLKRHKALVRR-------LQR 346
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 773 AEAQSRQEAERLREKLLVAENRLQAAESlcSAQHSHVIESS-----DLSEETIRMKETVEGLQDKLNKRDKEVTALTSQM 847
Cdd:pfam05557 347 RVLLLTKERDGYRAILESYDKELTMSNY--SPQLLERIEEAedmtqKMQAHNEEMEAQLSVAEEELGGYKQQAQTLEREL 424
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 848 DMLRAQVSALENkcKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISqelLRKERSLNELRVLLLEANRHSpgp 927
Cdd:pfam05557 425 QALRQQESLADP--SYSKEEVDSLRRKLETLELERQRLREQKNELEMELERRC---LQGDYDPKKTKVLHLSMNPAA--- 496
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 928 erdlsrevhKAEWRIKEQ--KLKDDIRGLREKLTGLDKEKSlSEQRRYSLIDPASPPELLKLQHQLVSTE 995
Cdd:pfam05557 497 ---------EAYQQRKNQleKLQAEIERLKRLLKKLEDDLE-QVLRLPETTSTMNFKEVLDLRKELESAE 556
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
417-923 |
1.39e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 1.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 417 RARLLVEN--VRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQT--------QLEHARIGELEQSLLLEKAQAE 486
Cdd:PRK04863 218 RDYLLPENsgVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITESTnyvaadymRHANERRVHLEEALELRRELYT 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 487 -RLLRELADNRLTTVAEKsrvlqlEEELSLRRGEIEelqhcllqsgpppADHPEAAETLRLRERLLSASKEHQRdstllq 565
Cdd:PRK04863 298 sRRQLAAEQYRLVEMARE------LAELNEAESDLE-------------QDYQAASDHLNLVQTALRQQEKIER------ 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 566 dkyehmlktYQTEVDKLRAANEKYAQ-------EVADLKAKVQQATTEnmglMDNWKSKLdslaSDHQKSLEdlkatlns 638
Cdd:PRK04863 353 ---------YQADLEELEERLEEQNEvveeadeQQEENEARAEAAEEE----VDELKSQL----ADYQQALD-------- 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 639 gpgAQQKEIGE----LKAL--VEGIKMEHQLELGNLQAKHdletamhgkekEGLRQKLQEVQEELAGLQQHWREQlEEQA 712
Cdd:PRK04863 408 ---VQQTRAIQyqqaVQALerAKQLCGLPDLTADNAEDWL-----------EEFQAKEQEATEELLSLEQKLSVA-QAAH 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 713 SQHRlelQEAQDQCR--------DAQLRAQELEGLDVEYRGQAQAIEFLKEQISlaekkmldyEMLQRAEAQsrQEAERL 784
Cdd:PRK04863 473 SQFE---QAYQLVRKiagevsrsEAWDVARELLRRLREQRHLAEQLQQLRMRLS---------ELEQRLRQQ--QRAERL 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 785 REKllvaenrlqaaesLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSG 864
Cdd:PRK04863 539 LAE-------------FCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAW 605
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*....
gi 85662410 865 EKKIDSLlkekrrleAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEANRH 923
Cdd:PRK04863 606 LAAQDAL--------ARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELAARKQA 656
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
349-559 |
1.45e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 1.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 349 ARKISGTTALQEALKEKQQHIEQLLAErdLERAEVAKATSHicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKE 428
Cdd:pfam17380 371 AMEISRMRELERLQMERQQKNERVRQE--LEAARKVKILEE--ERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEERAR 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 429 KVDLSNQLEEERR-KVEDLqfRVEEESITKGDLETQTQLEHARIGELEQSLLLEKaqaerllrELADNRLTTVAEKSRVL 507
Cdd:pfam17380 447 EMERVRLEEQERQqQVERL--RQQEEERKRKKLELEKEKRDRKRAEEQRRKILEK--------ELEERKQAMIEEERKRK 516
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 85662410 508 QLEEELSLRRGEIEELQHcLLQSGPPPADHPEAAETLRLRERLLSASKEHQR 559
Cdd:pfam17380 517 LLEKEMEERQKAIYEEER-RREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
367-522 |
1.62e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.45 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 367 QHIEQL--LAERDLERAEVAKAtshICEVEKEIALLKAQheqyVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVE 444
Cdd:COG1579 4 EDLRALldLQELDSELDRLEHR---LKELPAELAELEDE----LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIK 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 445 DLQFRVEEESITK--GDLETQTQLEHARIGELEQSLLLEKAQAERLLRELADNRLTTVAEKSRVLQLEEELSLRRGEIEE 522
Cdd:COG1579 77 KYEEQLGNVRNNKeyEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEA 156
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
334-523 |
1.69e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 334 RPSRSGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHICEVE---KEIALLKAQHEQYVAE 410
Cdd:COG1196 583 RARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAgrlREVTLEGEGGSAGGSL 662
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 411 AEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQSLLLEKAQAERLLR 490
Cdd:COG1196 663 TGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELL 742
|
170 180 190
....*....|....*....|....*....|....*..
gi 85662410 491 ELADNRLTTVAEKSRVL----QLEEELSLRRGEIEEL 523
Cdd:COG1196 743 EEEELLEEEALEELPEPpdleELERELERLEREIEAL 779
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
686-842 |
2.10e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 686 LRQKLQEVQEELAGLqqhwreqleeQASQHRLELQEAQDQcRDAQLRAQelegldveyrgqaqaIEFLKEQISLAEKKML 765
Cdd:COG1566 81 LQAALAQAEAQLAAA----------EAQLARLEAELGAEA-EIAAAEAQ---------------LAAAQAQLDLAQRELE 134
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 85662410 766 DYEMLQRAEAQSRQEAERLREKLLVAENRLQAAESLCSAQHSHVIESSDLSEETIRMKETVEGL-QDKLNKRDKEVTA 842
Cdd:COG1566 135 RYQALYKKGAVSQQELDEARAALDAAQAQLEAAQAQLAQAQAGLREEEELAAAQAQVAQAEAALaQAELNLARTTIRA 212
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
545-1016 |
2.33e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.06 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 545 RLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQEVADLKaKVQQATTENMGLMDNWKSKLDSL--- 621
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKE----LKELEEELKEAEEKEEEYAELQEELE-ELEEELEELEAELEELREELEKLekl 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 622 --ASDHQKSLEDLKATLNSGPGaqqkeigELKALVEGIKMEHQLElgnlqakhdletamhgKEKEGLRQKLQEVQEELAG 699
Cdd:COG4717 125 lqLLPLYQELEALEAELAELPE-------RLEELEERLEELRELE----------------EELEELEAELAELQEELEE 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 700 LQQHWREQLEEQASQHRLELQEAQDQCRDAQLRAQELEgldveyrgqaQAIEFLKEQISLAEKKMLDYEMLQR-AEAQSR 778
Cdd:COG4717 182 LLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ----------EELEELEEELEQLENELEAAALEERlKEARLL 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 779 QEAERLREKLLVAENRLQAAES-------------------LCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKE 839
Cdd:COG4717 252 LLIAAALLALLGLGGSLLSLILtiagvlflvlgllallfllLAREKASLGKEAEELQALPALEELEEEELEELLAALGLP 331
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 840 VTALTSQMDMLRAQVSALENKCKSGEK-----KIDSLLKEKRRLEAELEAVSRkthDASGQLVHISQELLRKERSLNELR 914
Cdd:COG4717 332 PDLSPEELLELLDRIEELQELLREAEEleeelQLEELEQEIAALLAEAGVEDE---EELRAALEQAEEYQELKEELEELE 408
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 915 VLLLEANrhspGPERDLSREVHKAEWRIKEQKLKDDIRGLREKLTGLDKEKSLSEQRRyslidpasppELLKLQHQLVST 994
Cdd:COG4717 409 EQLEELL----GELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAEL----------EQLEEDGELAEL 474
|
490 500
....*....|....*....|..
gi 85662410 995 EDALRDALNQAQQVERLVEALR 1016
Cdd:COG4717 475 LQELEELKAELRELAEEWAALK 496
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
681-948 |
2.35e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.05 E-value: 2.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 681 KEKEGLRQKLQEVQEELAGLQQHwREQLEEQASQHRLELQEAQDQCRDAQLRAQELegldveyrgqAQAIEFLKEQISLA 760
Cdd:COG1340 22 EEIEELKEKRDELNEELKELAEK-RDELNAQVKELREEAQELREKRDELNEKVKEL----------KEERDELNEKLNEL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 761 EKKMLDYEMLQRAEAQSRQEAERLREKLLVAENRLQAaESLCSAQHSHVIESSDLSEETIRMKETVEGLQDKLNKRDKEV 840
Cdd:COG1340 91 REELDELRKELAELNKAGGSIDKLRKEIERLEWRQQT-EVLSPEEEKELVEKIKELEKELEKAKKALEKNEKLKELRAEL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 841 TALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEAELEAVSRKTHDASGQLVHISQELLRKERSLNELRVLLLEA 920
Cdd:COG1340 170 KELRKEAEEIHKKIKELAEEAQELHEEMIELYKEADELRKEADELHKEIVEAQEKADELHEEIIELQKELRELRKELKKL 249
|
250 260
....*....|....*....|....*...
gi 85662410 921 NRHSPGPERDLSREVHKAEWRIKEQKLK 948
Cdd:COG1340 250 RKKQRALKREKEKEELEEKAEEIFEKLK 277
|
|
| hsdR |
PRK11448 |
type I restriction enzyme EcoKI subunit R; Provisional |
687-799 |
2.78e-03 |
|
type I restriction enzyme EcoKI subunit R; Provisional
Pssm-ID: 236912 [Multi-domain] Cd Length: 1123 Bit Score: 41.86 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 687 RQKLQEVQEELAGLqqhwREQLEEQASqhrlELQEAQDQCRDAQLRAQELEGLDVEYRGQAQAIEflkeqislaekkmLD 766
Cdd:PRK11448 141 ENLLHALQQEVLTL----KQQLELQAR----EKAQSQALAEAQQQELVALEGLAAELEEKQQELE-------------AQ 199
|
90 100 110
....*....|....*....|....*....|....
gi 85662410 767 YEMLQ-RAEAQSRQEAERLREKLLVAENRLQAAE 799
Cdd:PRK11448 200 LEQLQeKAAETSQERKQKRKEITDQAAKRLELSE 233
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
674-879 |
3.09e-03 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 41.86 E-value: 3.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 674 LETAMHGKEKEGLRQKLQEVQEELAGLQQHWR--EQLEEQAS-------QH---RLELQEAQDQCRDAQLRAQELEGL-- 739
Cdd:COG3096 886 LADETLADRLEELREELDAAQEAQAFIQQHGKalAQLEPLVAvlqsdpeQFeqlQADYLQAKEQQRRLKQQIFALSEVvq 965
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 740 DVEYRGQAQAIEFLKEQISLAEKKMldyEMLQRAEAQSRQEAERLREkllvAENRL-QAAESLCSAQHSHVIESSDLSEE 818
Cdd:COG3096 966 RRPHFSYEDAVGLLGENSDLNEKLR---ARLEQAEEARREAREQLRQ----AQAQYsQYNQVLASLKSSRDAKQQTLQEL 1038
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 85662410 819 TIRMKETveGLQDKLNKRDK---EVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLE 879
Cdd:COG3096 1039 EQELEEL--GVQADAEAEERariRRDELHEELSQNRSRRSQLEKQLTRCEAEMDSLQKRLRKAE 1100
|
|
| HAP1_N |
pfam04849 |
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found ... |
449-727 |
4.07e-03 |
|
HAP1 N-terminal conserved region; This family represents an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologs. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntington's disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34.
Pssm-ID: 461455 [Multi-domain] Cd Length: 309 Bit Score: 40.39 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 449 RVEEESITKGDLETQTQLEH---------ARIGeleQSLLlekaQAERLLREladnrlttvaeksRVLQLEEELSLRRGE 519
Cdd:pfam04849 57 RVSQMTKTYNDIEAVTRLLEekerdlelaARIG---QSLL----KQNSVLTE-------------RNEALEEQLGSAREE 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 520 IEELQHC------LLQ--SGPPPADHPEAAETLRLRERLLSASKEHQRDSTLLQDKyehmLKTYQTEVDKLRAANEKYAQ 591
Cdd:pfam04849 117 ILQLRHElskkddLLQiySNDAEESETESSCSTPLRRNESFSSLHGCVQLDALQEK----LRGLEEENLKLRSEASHLKT 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 592 EVADLKAKVQQattenmgLMDNWKSKLdSLASDHQKSLEDLKATLNSGPGAQQKEIGELKALVegIKMEHQLElgnlqak 671
Cdd:pfam04849 193 ETDTYEEKEQQ-------LMSDCVEQL-SEANQQMAELSEELARKMEENLRQQEEITSLLAQI--VDLQHKCK------- 255
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 85662410 672 hdletaMHGKEKEGLRQKLQ-------EVQEELAGLQQHWREQLEeqasqhrlELQEAQDQCR 727
Cdd:pfam04849 256 ------ELGIENEELQQHLQaskeaqrQLTSELQELQDRYAECLG--------MLHEAQEELK 304
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
587-1014 |
5.95e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.52 E-value: 5.95e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 587 EKYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQ--KSLEDLKATLNSGPGAQQKEIGELKALVEGIKMEHQLe 664
Cdd:COG4717 49 ERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEeyAELQEELEELEEELEELEAELEELREELEKLEKLLQL- 127
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 665 LGNLQAKHDLETAMHGKEK--EGLRQKLQEVQEelaglQQHWREQLEEQASQHRLELQEAQDQCRDAQLraQELEGLDVE 742
Cdd:COG4717 128 LPLYQELEALEAELAELPErlEELEERLEELRE-----LEEELEELEAELAELQEELEELLEQLSLATE--EELQDLAEE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 743 YRGQAQAIEFLKEQISLAEKKMLDYEmLQRAEAQSRQEAERLREKLLVAENRLQAAESLCS--AQHSHVIESSDLSEETI 820
Cdd:COG4717 201 LEELQQRLAELEEELEEAQEELEELE-EELEQLENELEAAALEERLKEARLLLLIAAALLAllGLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 821 RMKETVEGLQDKLNKRDKEVTALTSQMDMLRAQVSALENKCKSGEKKIDSLLKEKRRLEA-ELEAVSRKTHDASGQLVHI 899
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELlELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 900 SQELLRKERsLNELRVLLLEANRHSpgpERDLSREVHKAEwriKEQKLKDDIRGLREKLTGLDKEkslseqrRYSLIDPA 979
Cdd:COG4717 360 EEELQLEEL-EQEIAALLAEAGVED---EEELRAALEQAE---EYQELKEELEELEEQLEELLGE-------LEELLEAL 425
|
410 420 430
....*....|....*....|....*....|....*
gi 85662410 980 SPPELLKLQHQLVSTEDALRDALNQAQQVERLVEA 1014
Cdd:COG4717 426 DEEELEEELEELEEELEELEEELEELREELAELEA 460
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
369-510 |
6.16e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 40.13 E-value: 6.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 369 IEQLLAERDLERAEVAKATSHICEVEKEIALLKAQHEQYVAEAEEKLQRA--RLLVENVRKEKVD--LSNQLEEERRKVE 444
Cdd:pfam09787 49 LEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQEEAESSREQLQELeeQLATERSARREAEaeLERLQEELRYLEE 128
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 445 DL---------QFRVEEESITKGDLE---------TQTQLEhARIGELEQSLLLEKAQAERLLREladnrlttvaEKSRV 506
Cdd:pfam09787 129 ELrrskatlqsRIKDREAEIEKLRNQltsksqsssSQSELE-NRLHQLTETLIQKQTMLEALSTE----------KNSLV 197
|
....
gi 85662410 507 LQLE 510
Cdd:pfam09787 198 LQLE 201
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
347-486 |
6.41e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.53 E-value: 6.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 347 RYARKISGTTALQEALKEKQQHIEQllAERDLERAEVAKatshICEVEKEIALLKAQHEQYVAEAEEKLQRA--RLL--V 422
Cdd:PRK12704 22 YFVRKKIAEAKIKEAEEEAKRILEE--AKKEAEAIKKEA----LLEAKEEIHKLRNEFEKELRERRNELQKLekRLLqkE 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 85662410 423 ENVRKEKVDLS---NQLEEERRKVEDLQFRVEEESITKGDLETQTQLEHARIGELEQ----SLLLEKAQAE 486
Cdd:PRK12704 96 ENLDRKLELLEkreEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAeeakEILLEKVEEE 166
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
399-767 |
6.94e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.26 E-value: 6.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 399 LLKAQHEQYVAEAEEKLQRARLLVENVRKEKVDLSNQLEEERRKVEDLQFRVEEesitkgdLETQTQLEHARIGELEQSL 478
Cdd:pfam07888 31 LLQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAE-------LKEELRQSREKHEELEEKY 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 479 LLEKAQAERLLRELADNRLTTVAEKSRVLQLEEE---LSLRRGEIEelqhcllqsgpppadhpeaAETLRLRER---LLS 552
Cdd:pfam07888 104 KELSASSEELSEEKDALLAQRAAHEARIRELEEDiktLTQRVLERE-------------------TELERMKERakkAGA 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 553 ASKEHQRDSTLLQDKY---EHMLKTYQTEVDKLRAANEKYAQEVADLKAKV----------QQATTENMGLMDNWKSKLD 619
Cdd:pfam07888 165 QRKEEEAERKQLQAKLqqtEEELRSLSKEFQELRNSLAQRDTQVLQLQDTIttltqklttaHRKEAENEALLEELRSLQE 244
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 620 SLASDHQKSlEDLKATLNSGPGAQQKEIGEL-KALVEGIKMEHQLELGNLQAKHDleTAMHGKEKEGLRQKLQEVQEELA 698
Cdd:pfam07888 245 RLNASERKV-EGLGEELSSMAAQRDRTQAELhQARLQAAQLTLQLADASLALREG--RARWAQERETLQQSAEADKDRIE 321
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 85662410 699 GLQ---QHWREQLEEQASQH-RLELQEAQDQ-CRDAQLRAQELEglDVEYRGQAQAIEFLKEQISLAEKKMLDY 767
Cdd:pfam07888 322 KLSaelQRLEERLQEERMEReKLEVELGREKdCNRVQLSESRRE--LQELKASLRVAQKEKEQLQAEKQELLEY 393
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
350-631 |
7.68e-03 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 40.33 E-value: 7.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 350 RKISGTTALQEALKEKQQHIEQLLAERdlERAEVAKATShicEVEKEIALLKAQHEQYVAEAEEKLQRARLLVENVRKEk 429
Cdd:COG5185 296 EKIAEYTKSIDIKKATESLEEQLAAAE--AEQELEESKR---ETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGE- 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 430 vdlsNQLEEERRKVEDLQFRVeEESITKGDLETQTQLEHARIGE--LEQSLLLEKAQAERLLRELADNRLTTVAEKSRVL 507
Cdd:COG5185 370 ----VELSKSSEELDSFKDTI-ESTKESLDEIPQNQRGYAQEILatLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLN 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 508 QLEEELSLRRGEIEELQHCLLQSgpppadhPEAAETLRLRERLLSASKEHQRdstlLQDKYEHMLKTYQTEVDKLRAANE 587
Cdd:COG5185 445 ELISELNKVMREADEESQSRLEE-------AYDEINRSVRSKKEDLNEELTQ----IESRVSTLKATLEKLRAKLERQLE 513
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 85662410 588 KYAQEVADLKAKVQQATTENMGLMDNWKSKLDSLASDHQKSLED 631
Cdd:COG5185 514 GVRSKLDQVAESLKDFMRARGYAHILALENLIPASELIQASNAK 557
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
587-920 |
9.50e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 39.89 E-value: 9.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 587 EKYAQEVADLKAKVQQA---TTENMGLMDNWKSKLDS-LASDHQK-SLEDLKATLNSGPGAQ---QKEIGELKALVegIK 658
Cdd:PRK11281 76 DRQKEETEQLKQQLAQApakLRQAQAELEALKDDNDEeTRETLSTlSLRQLESRLAQTLDQLqnaQNDLAEYNSQL--VS 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 659 MEHQLElgnlQAKHDLETAMhgKEKEGLRQKLQEVQEELAGLQQHWREQLeeQASQHRLELQEAQDQcrdaqlraQELEG 738
Cdd:PRK11281 154 LQTQPE----RAQAALYANS--QRLQQIRNLLKGGKVGGKALRPSQRVLL--QAEQALLNAQNDLQR--------KSLEG 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 739 LDV-EYRGQAQaIEFLKEQISLAEK-----------KMLDYEMLQRAEAQSRQEAERlrekllVAENRLQAAESLCSAQH 806
Cdd:PRK11281 218 NTQlQDLLQKQ-RDYLTARIQRLEHqlqllqeainsKRLTLSEKTVQEAQSQDEAAR------IQANPLVAQELEINLQL 290
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 85662410 807 S-HVIESSD----LSEETIRMKETVEGLQDK--------------------LNK------RDKEVTALTSQMDMLRAQ-- 853
Cdd:PRK11281 291 SqRLLKATEklntLTQQNLRVKNWLDRLTQSernikeqisvlkgslllsriLYQqqqalpSADLIEGLADRIADLRLEqf 370
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 85662410 854 -VSALENKCKSGEKKIDSLLKEkrrleaELEAVSRKTHDASGQLVHISQELLrkERSLNELRVLLLEA 920
Cdd:PRK11281 371 eINQQRDALFQPDAYIDKLEAG------HKSEVTDEVRDALLQLLDERRELL--DQLNKQLNNQLNLA 430
|
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