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Conserved domains on  [gi|160358776|ref|NP_034579|]
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homeobox protein Hox-A1 isoform 1 [Mus musculus]

Protein Classification

homeobox domain-containing protein( domain architecture ID 13432619)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

CATH:  1.10.10.60
Gene Ontology:  GO:0000981|GO:0043565
PubMed:  8768896|12520008|11470884
SCOP:  4000291

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
234-287 4.39e-28

Homeodomain;


:

Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 103.73  E-value: 4.39e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 160358776  234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:pfam00046   4 RTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
COG5576 super family cl35021
Homeodomain-containing transcription factor [Transcription];
177-287 9.96e-08

Homeodomain-containing transcription factor [Transcription];


The actual alignment was detected with superfamily member COG5576:

Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 50.90  E-value: 9.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358776 177 YNNSLSPLHAShqEACRSPASETSSP---------AQTFdwMKVKRNPPKTGKvgeygyvgqPNAVRTNFTTKQLTELEK 247
Cdd:COG5576    2 PVQPMQPLSAL--ESQRMPQIRTIKTtknkreveaADSE--MKLERKQDGSSP---------PKSKRRRTTDEQLMVLER 68

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 160358776 248 EFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:COG5576   69 EFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKK 108
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
234-287 4.39e-28

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 103.73  E-value: 4.39e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 160358776  234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:pfam00046   4 RTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 234-286 3.33e-25

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 96.17  E-value: 3.33e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 160358776   234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQK 286
Cdd:smart00389   5 RTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 234-289 4.91e-25

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 95.77  E-value: 4.91e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 160358776 234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKRE 289
Cdd:cd00086    4 RTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
177-287 9.96e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 50.90  E-value: 9.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358776 177 YNNSLSPLHAShqEACRSPASETSSP---------AQTFdwMKVKRNPPKTGKvgeygyvgqPNAVRTNFTTKQLTELEK 247
Cdd:COG5576    2 PVQPMQPLSAL--ESQRMPQIRTIKTtknkreveaADSE--MKLERKQDGSSP---------PKSKRRRTTDEQLMVLER 68

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 160358776 248 EFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:COG5576   69 EFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKK 108
 
Name Accession Description Interval E-value
Homeodomain pfam00046
Homeodomain;
234-287 4.39e-28

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 103.73  E-value: 4.39e-28
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 160358776  234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:pfam00046   4 RTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
 234-286 3.33e-25

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 96.17  E-value: 3.33e-25
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 160358776   234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQK 286
Cdd:smart00389   5 RTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
 234-289 4.91e-25

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 95.77  E-value: 4.91e-25
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 160358776 234 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKKRE 289
Cdd:cd00086    4 RTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
177-287 9.96e-08

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 50.90  E-value: 9.96e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 160358776 177 YNNSLSPLHAShqEACRSPASETSSP---------AQTFdwMKVKRNPPKTGKvgeygyvgqPNAVRTNFTTKQLTELEK 247
Cdd:COG5576    2 PVQPMQPLSAL--ESQRMPQIRTIKTtknkreveaADSE--MKLERKQDGSSP---------PKSKRRRTTDEQLMVLER 68

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 160358776 248 EFHFNKYLTRARRVEIAASLQLNETQVKIWFQNRRMKQKK 287
Cdd:COG5576   69 EFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKK 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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