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Conserved domains on  [gi|281485615|ref|NP_035017|]
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NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial [Mus musculus]

Protein Classification

ETC complex I subunit( domain architecture ID 10521567)

ETC (electron transport chain) complex I subunit similar to mitochondrial NADH dehydrogenase [ubiquinone] iron-sulfur protein 4 (NDUFS4), which is an accessory subunit and may not be involved in catalysis; complex I functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ETC_C1_NDUFA4 pfam04800
ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase ...
76-167 1.56e-50

ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.


:

Pssm-ID: 428129  Cd Length: 93  Bit Score: 157.27  E-value: 1.56e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281485615   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYDVEEKKVPK 154
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTANTKKWVLEFDPLEpRWENPLMGWTSSGDPLSQVRLKFDSKEDAIAYAEKQGWEYEVEEPKKRK 80
                          90
                  ....*....|...
gi 281485615  155 PKSKSYGANFSWN 167
Cdd:pfam04800  81 RRPKSYADNFSWN 93
 
Name Accession Description Interval E-value
ETC_C1_NDUFA4 pfam04800
ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase ...
76-167 1.56e-50

ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.


Pssm-ID: 428129  Cd Length: 93  Bit Score: 157.27  E-value: 1.56e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281485615   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYDVEEKKVPK 154
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTANTKKWVLEFDPLEpRWENPLMGWTSSGDPLSQVRLKFDSKEDAIAYAEKQGWEYEVEEPKKRK 80
                          90
                  ....*....|...
gi 281485615  155 PKSKSYGANFSWN 167
Cdd:pfam04800  81 RRPKSYADNFSWN 93
 
Name Accession Description Interval E-value
ETC_C1_NDUFA4 pfam04800
ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase ...
76-167 1.56e-50

ETC complex I subunit conserved region; Family of pankaryotic NADH-ubiquinone oxidoreductase subunits (EC:1.6.5.3) (EC:1.6.99.3) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein.


Pssm-ID: 428129  Cd Length: 93  Bit Score: 157.27  E-value: 1.56e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 281485615   76 KVRIFVPARNNMQSGVNNTKKWKMEFDTRE-RWENPLMGWASTADPLSNMVLTFSAKEDAIAFAEKNGWSYDVEEKKVPK 154
Cdd:pfam04800   1 TVRIYKPAKNAMQSGTANTKKWVLEFDPLEpRWENPLMGWTSSGDPLSQVRLKFDSKEDAIAYAEKQGWEYEVEEPKKRK 80
                          90
                  ....*....|...
gi 281485615  155 PKSKSYGANFSWN 167
Cdd:pfam04800  81 RRPKSYADNFSWN 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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