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Conserved domains on  [gi|6755396|ref|NP_035445|]
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serum amyloid A-3 protein precursor [Mus musculus]

Protein Classification

SAA domain-containing protein (domain architecture ID 10447209)

SAA domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
23-122 3.58e-58

Serum amyloid A protein;


:

Pssm-ID: 395215  Cd Length: 101  Bit Score: 174.79  E-value: 3.58e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     23 QFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 6755396    102 EWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
23-122 3.58e-58

Serum amyloid A protein;


Pssm-ID: 395215  Cd Length: 101  Bit Score: 174.79  E-value: 3.58e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     23 QFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 6755396    102 EWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
21-122 5.08e-54

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 164.23  E-value: 5.08e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396      21 WVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQF 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLIsGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 6755396     100 ANEWGRSGKDPNHFRPAGLPKRY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Name Accession Description Interval E-value
SAA pfam00277
Serum amyloid A protein;
23-122 3.58e-58

Serum amyloid A protein;


Pssm-ID: 395215  Cd Length: 101  Bit Score: 174.79  E-value: 3.58e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396     23 QFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQFAN 101
Cdd:pfam00277   1 SFFKEAAQGAGDMWRAYWDMREANYKNSDKYFHARGNYDAAQRGPGGVWAAEVISDAREYLQGHVsGRGLEDSAADQEAN 80
                          90       100
                  ....*....|....*....|.
gi 6755396    102 EWGRSGKDPNHFRPAGLPKRY 122
Cdd:pfam00277  81 RWGRSGKDPNHFRPRGLPDKY 101
SAA smart00197
Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. ...
21-122 5.08e-54

Serum amyloid A proteins; Serum amyloid A proteins are induced during the acute-phase response. Secondary amyloidosis is characterised by the extracellular accumulation in tissues of SAA proteins. SAA proteins are apolipoproteins.


Pssm-ID: 214552  Cd Length: 103  Bit Score: 164.23  E-value: 5.08e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 6755396      21 WVQFMKEAGQGSRDMWRAYSDMKKANWKNSDKYFHARGNYDAARRGPGGAWAAKVISDAREAVQKFT-GHGAEDSRADQF 99
Cdd:smart00197   1 WRSFFKEALQGAWDMWRAYRDMKEANHQNADKYFHARGNYDAAQRGPGGVWAAKVISDAREYFQGLIsGRGLEDSKADQK 80
                           90       100
                   ....*....|....*....|...
gi 6755396     100 ANEWGRSGKDPNHFRPAGLPKRY 122
Cdd:smart00197  81 ANEWGRSGKDPNRFRPPGLPEKY 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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