|
Name |
Accession |
Description |
Interval |
E-value |
| HMMR_N |
pfam15905 |
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of ... |
16-337 |
2.68e-106 |
|
Hyaluronan mediated motility receptor N-terminal; HMMR_N is the N-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464932 [Multi-domain] Cd Length: 329 Bit Score: 326.77 E-value: 2.68e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 16 GCAPSPGAYDVKTSESTKGPVSFQKSQRFKNQR--ESQQNLNIDKDTTLLASAKKAKTLVSKKESQKND---KDVKRLEK 90
Cdd:pfam15905 1 GCAPPPGSYDVKTSDALKGPVSFEKSQRFRKQKaaESQPNLNNSKDASTPATARKVKSLELKKKSQKNLkesKDQKELEK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 91 EIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELTRANELLKSKFSEDAHQKNMRTLSLE 170
Cdd:pfam15905 81 EIRALVQERGEQDKRLQALEEELEKVEAKLNAAVREKTSLSASVASLEKQLLELTRVNELLKAKFSEDGTQKKMSSLSME 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 171 LMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEK 250
Cdd:pfam15905 161 LMKLRNKLEAKMKEVMAKQEGMEGKLQVTQKNLEHSKGKVAQLEEKLVSTEKEKIEEKSETEKLLEYITELSCVSEQVEK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 251 YKLDIAQLEEDLKEKDREILCLKQSLEEK-VSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLER 329
Cdd:pfam15905 241 YKLDIAQLEELLKEKNDEIESLKQSLEEKeQELSKQIKDLNEKCKLLESEKEELLREYEEKEQTLNAELEELKEKLTLEE 320
|
....*...
gi 47059017 330 QEYEKLQQ 337
Cdd:pfam15905 321 QEHQKLQQ 328
|
|
| HMMR_C |
pfam15908 |
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of ... |
552-708 |
3.33e-55 |
|
Hyaluronan mediated motility receptor C-terminal; HMMR_C is the C-terminal region of eukaryotic hyaluronan-mediated motility receptor proteins. The protein is functionally associated with BRCA1 and thus predicted to be a common, low-penetrance breast cancer candidate.
Pssm-ID: 464934 [Multi-domain] Cd Length: 157 Bit Score: 185.89 E-value: 3.33e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 552 RKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQLLGH 631
Cdd:pfam15908 1 TKQLEMEEQRKARLENTVDELTEEIKKWRNLYEELYNKTKPFQEQLDAFEAEKNALLNENGAAQEELNKLSDAYAKLLGH 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47059017 632 QNLKQKIKHVVKLKDENSQLKSEVSKLRSQLAKRKQNELRLQGELDKALGIRHFDPSKAFCHESKENVTLKTPLKEG 708
Cdd:pfam15908 81 QNQKQKIKHVVKLKEENTQLKQEVSKLRSQLAKEKQVQKKLQEQLNGAQGIRRFDPSKAFQHESKENFEPKTPLKEG 157
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
249-550 |
8.45e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 68.81 E-value: 8.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 249 EKYKldiaQLEEDLKEKDREILCLK--QSLEEKVSFSKQIEDLTVKCQLLEAERDDL---VSKDRERAESLSAEMQVLTE 323
Cdd:COG1196 213 ERYR----ELKEELKELEAELLLLKlrELEAELEELEAELEELEAELEELEAELAELeaeLEELRLELEELELELEEAQA 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 324 KLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLcsfqEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLE 403
Cdd:COG1196 289 EEYELLAELARLEQDIARLEERRRELEERLEELEEEL----AELEEELEELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 404 EETKSTAEQLRRlddlLREKEIELEKRTAAHAQATVIAQEKYSDTAQTLRDVTAQLESYKSstlkEIEDLKLENLTLQEK 483
Cdd:COG1196 365 EALLEAEAELAE----AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEE----ELEELEEALAELEEE 436
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 47059017 484 VAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNED 550
Cdd:COG1196 437 EEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
181-546 |
1.17e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.09 E-value: 1.17e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 181 KMRSMMAKQEGMELKLQATQKDLIESKGKIvqlegklvsieKEKIDEKSETEKLLEYIE-EISCASDQVEKYKLDIAQLE 259
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRL-----------DELSQELSDASRKIGEIEkEIEQLEQEEEKLKERLEELE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 260 EDLKEKDREILCLKQSLEEkvsFSKQIEDLTVKCQLLEAERDDLVSK-DRERAESLSAEMQVLTEklllERQEYEKLQQN 338
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKE---LEARIEELEEDLHKLEEALNDLEARlSHSRIPEIQAELSKLEE----EVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 339 ELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDD 418
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 419 LLREKEIELEKrtaahaqatviAQEKYSDTAQTLRDVTAQLESyKSSTLKEIEDLKLENLTLQEKVAMAEK---RVEDVQ 495
Cdd:TIGR02169 897 QLRELERKIEE-----------LEAQIEKKRKRLSELKAKLEA-LEEELSEIEDPKGEDEEIPEEELSLEDvqaELQRVE 964
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 47059017 496 QQILTAESTN----QEYAKVVQDLqNSSTLKEAEIKEITSSYLEKITDLQNQLRQ 546
Cdd:TIGR02169 965 EEIRALEPVNmlaiQEYEEVLKRL-DELKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
178-498 |
1.45e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.69 E-value: 1.45e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 178 RETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEkseTEKLLEYIEEISCASDQVEKYKLDIAQ 257
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEEL---SRQISALRKDLARLEAEVEQLEERIAQ 751
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 258 LEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQ 337
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLER 831
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 338 NELQSQSLLQQEKELSAHLQQQLcsfqEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLD 417
Cdd:TIGR02168 832 RIAATERRLEDLEEQIEELSEDI----ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 418 DLLREKEIELEKRTAAHAQatviAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKvamAEKRVEDVQQQ 497
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQ----LELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEE---ARRRLKRLENK 980
|
.
gi 47059017 498 I 498
Cdd:TIGR02168 981 I 981
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
103-462 |
5.14e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 5.14e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 103 DKRIQDMESELENTEANLNapvtekpSLSANNASLEKRLTELTR-ANELLKSKfsedAHQKNMRTLSLELMKLRnkretk 181
Cdd:COG1196 171 KERKEEAERKLEATEENLE-------RLEDILGELERQLEPLERqAEKAERYR----ELKEELKELEAELLLLK------ 233
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 182 MRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKlvsIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEED 261
Cdd:COG1196 234 LRELEAELEELEAELEELEAELEELEAELAELEAE---LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 262 LKEKDREILCLKQSLEEKvsfSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQ 341
Cdd:COG1196 311 RRELEERLEELEEELAEL---EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 342 SQSLLQQEKELSAHLQQqlcsfQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLR 421
Cdd:COG1196 388 LLEALRAAAELAAQLEE-----LEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALL 462
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 47059017 422 EKEIELEKRTAAHAQATVIAQEKYSDTAQTLRDVTAQLESY 462
Cdd:COG1196 463 ELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADY 503
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
255-680 |
1.70e-09 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 60.94 E-value: 1.70e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 255 IAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLvsKDRERAESLSAEMQVLTEKLLLERQEYEK 334
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKL--EKLLQLLPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 335 LQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLR 414
Cdd:COG4717 151 LEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 415 RLDDLLREKEIElekRTAAHAQATVIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDV 494
Cdd:COG4717 231 QLENELEAAALE---ERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 495 QQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEitssYLEKITDLQnQLRQQNEDFRKQLEEEGAKMTEKEtavteltm 574
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLE----LLDRIEELQ-ELLREAEELEEELQLEELEQEIAA-------- 374
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 575 einkwrLLYEELFDKTKPFQQQLDAFEaEKQALLNEHGATQEQLSKIRDSYAQLLGHQNLKQKIKHVVKLKDENSQLKSE 654
Cdd:COG4717 375 ------LLAEAGVEDEEELRAALEQAE-EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE 447
|
410 420
....*....|....*....|....*...
gi 47059017 655 VSKLRSQLAKRKQ--NELRLQGELDKAL 680
Cdd:COG4717 448 LEELREELAELEAelEQLEEDGELAELL 475
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
43-683 |
2.34e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.84 E-value: 2.34e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 43 RFKNQRESQQNLNIDKDTTLLASAKKAKTLVSKKESQKNDKDVKrLEKEIHVLLQERGTQDKRIQDMESELENTEANLNA 122
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSE-LEEEIEELQKELYALANEISRLEQQKQILRERLAN 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 123 PVTEKPSLSANNASLEKRLTELTRANELLKSKFSEDahQKNMRTLSLELMKLRNKRETKMRSMMAKQEgmelKLQATQKD 202
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEEL--KEELESLEAELEELEAELEELESRLEELEE----QLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 203 LIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEIscasdQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSF 282
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL-----LKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 283 SKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQ-----------EKE 351
Cdd:TIGR02168 463 LEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELisvdegyeaaiEAA 542
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 352 LSAHLQQQLC----------SFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRR-LDDLL 420
Cdd:TIGR02168 543 LGGRLQAVVVenlnaakkaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKaLSYLL 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 421 ------REKEIELEKRTAAHAQATVIAQEKYSDTAQTLrdVTAQLESYKSSTL---KEIEDLKLENLTLQEKVAMAEKRV 491
Cdd:TIGR02168 623 ggvlvvDDLDNALELAKKLRPGYRIVTLDGDLVRPGGV--ITGGSAKTNSSILerrREIEELEEKIEELEEKIAELEKAL 700
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 492 EDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSyLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTE 571
Cdd:TIGR02168 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAE-VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 572 LTMEINKWRLLYEELfdktkpfQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQLLghQNLKQKIKHVVKLKDENSQL 651
Cdd:TIGR02168 780 AEAEIEELEAQIEQL-------KEELKALREALDELRAELTLLNEEAANLRERLESLE--RRIAATERRLEDLEEQIEEL 850
|
650 660 670
....*....|....*....|....*....|..
gi 47059017 652 KSEVSKLRSQLAKRKQNELRLQGELDKALGIR 683
Cdd:TIGR02168 851 SEDIESLAAEIEELEELIEELESELEALLNER 882
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
222-663 |
9.74e-09 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.90 E-value: 9.74e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 222 KEKIDEKSET---EKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEA 298
Cdd:PRK02224 193 KAQIEEKEEKdlhERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETER 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 299 ERDDLV---SKDRERAESLSAEMQVLTEKLLLERQEYEKLqqnELQSQSLLQQEKELSAHLQQQLCSFQEemtsernvFK 375
Cdd:PRK02224 273 EREELAeevRDLRERLEELEEERDDLLAEAGLDDADAEAV---EARREELEDRDEELRDRLEECRVAAQA--------HN 341
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 376 EQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVI--AQEKYSDTAQTLR 453
Cdd:PRK02224 342 EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDlgNAEDFLEELREER 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 454 DVTAQLESYKSSTLKEIEDLKLENLTLQEK------------------VAMAEKRVEDVQQQILTAEStnqEYAKVVQDL 515
Cdd:PRK02224 422 DELREREAELEATLRTARERVEEAEALLEAgkcpecgqpvegsphvetIEEDRERVEELEAELEDLEE---EVEEVEERL 498
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 516 QNSSTLKEAEikeitsSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQ 595
Cdd:PRK02224 499 ERAEDLVEAE------DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEARE 572
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47059017 596 QLDAFEAEKQALLNEhgatQEQLSKIRDSYAQLLGH----QNLKQKIKHVVKLKDENSQLKSEVSKLRSQLA 663
Cdd:PRK02224 573 EVAELNSKLAELKER----IESLERIRTLLAAIADAedeiERLREKREALAELNDERRERLAEKRERKRELE 640
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
43-578 |
3.53e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 43 RFKNQRESQQNLNIDKDTTLLASAKKAKTLVSKKESQKNDKdVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNA 122
Cdd:COG1196 235 RELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-LEELELELEEAQAEEYELLAELARLEQDIARLEERRRE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 123 pvtekpsLSANNASLEKRLTELTRANELLKSKFSEDAHQKNMRTLSLELMKL-RNKRETKMRSMMAKQEGMELKLQATQK 201
Cdd:COG1196 314 -------LEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAeLAEAEEALLEAEAELAEAEEELEELAE 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 202 DLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEiscASDQVEKYKLDIAQLEEDLKEKDREILclkQSLEEKVS 281
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEE---LEEALAELEEEEEEEEEALEEAAEEEA---ELEEEEEA 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 282 FSKQIEDLTVKCQLLEAERDDLVSKDRERA--ESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQ----------- 348
Cdd:COG1196 461 LLELLAELLEEAALLEAALAELLEELAEAAarLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLigveaayeaal 540
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 349 EKELSAHLQQQLCSFQEEMTSERNVFKEQLK-----LALDELDAVQQKKEQSEKLVKQ-----LEEETKSTAEQLRRLDD 418
Cdd:COG1196 541 EAALAAALQNIVVEDDEVAAAAIEYLKAAKAgratfLPLDKIRARAALAAALARGAIGaavdlVASDLREADARYYVLGD 620
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 419 LLREKEIELEKRTAAHAQATVIAQEKYSDTAQtlRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQI 498
Cdd:COG1196 621 TLLGRTLVAARLEAALRRAVTLAGRLREVTLE--GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEA 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 499 LTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINK 578
Cdd:COG1196 699 LLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
65-663 |
3.91e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 3.91e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 65 SAKKAKTLVSKKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTEL 144
Cdd:TIGR02168 361 EELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 145 ---TRANELLKSKFSEDAHQKNMRTLSLELMKLRNKRETKMRSMMAKQ------EGMELKLQATQKDLIESKGKIVQLEG 215
Cdd:TIGR02168 441 eleELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQarldslERLQENLEGFSEGVKALLKNQSGLSG 520
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 216 KL-VSIEKEKIDEKSETEkLLEYIEEISCA--SDQVEKYKLDIAQLEEDLKEKdREILCLKQSLEEKVSFSKQIEDLTVK 292
Cdd:TIGR02168 521 ILgVLSELISVDEGYEAA-IEAALGGRLQAvvVENLNAAKKAIAFLKQNELGR-VTFLPLDSIKGTEIQGNDREILKNIE 598
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 293 CQLLEAerDDLVSKDR-----------------------ERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQE 349
Cdd:TIGR02168 599 GFLGVA--KDLVKFDPklrkalsyllggvlvvddldnalELAKKLRPGYRIVTLDGDLVRPGGVITGGSAKTNSSILERR 676
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 350 KELsAHLQQQLcsfqEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLddllrEKEIELEK 429
Cdd:TIGR02168 677 REI-EELEEKI----EELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARL-----EAEVEQLE 746
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 430 RTAAHAQATVIAQEKYsdtAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQIltaESTNQEYA 509
Cdd:TIGR02168 747 ERIAQLSKELTELEAE---IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL---TLLNEEAA 820
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 510 KVVQDLQNSSTLKEAEIKEitssylekITDLQNQLRQQNED---FRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEEL 586
Cdd:TIGR02168 821 NLRERLESLERRIAATERR--------LEDLEEQIEELSEDiesLAAEIEELEELIEELESELEALLNERASLEEALALL 892
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 587 FDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQL-LGHQNLKQKI------------KHVVKLKDENSQLKS 653
Cdd:TIGR02168 893 RSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLeVRIDNLQERLseeysltleeaeALENKIEDDEEEARR 972
|
650
....*....|
gi 47059017 654 EVSKLRSQLA 663
Cdd:TIGR02168 973 RLKRLENKIK 982
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
193-561 |
2.53e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.29 E-value: 2.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 193 ELKLQATQKDLIESKGKIVQLEGKLVSIEKEkidekseteklleyieeiscaSDQVEKYKldiaQLEEDLKEKDREILCL 272
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQ---------------------AEKAERYK----ELKAELRELELALLVL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 273 K-QSLEEKVSFSKQIEDltvkcqlleaerddlvsKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKE 351
Cdd:TIGR02168 233 RlEELREELEELQEELK-----------------EAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN 295
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 352 LSAHLQQQLCSFQEEMTSERNvfkeQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRT 431
Cdd:TIGR02168 296 EISRLEQQKQILRERLANLER----QLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 432 AAHAQATVIAQEKYSDTAQTLRdvtaqlesyksstlkEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKv 511
Cdd:TIGR02168 372 SRLEELEEQLETLRSKVAQLEL---------------QIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL- 435
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 47059017 512 vQDLQNSSTLKEAEIKEITSSY------LEKITDLQNQLRQQNEDFRKQLEEEGAK 561
Cdd:TIGR02168 436 -KELQAELEELEEELEELQEELerleeaLEELREELEEAEQALDAAERELAQLQAR 490
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
229-571 |
3.04e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 3.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 229 SETEKLLEYIEEIScasDQVEKYKLDIAQLEEDLK--EKDREILCLKQSLEEKvsfsKQIEDLTVKCQLLEAERDDLVSK 306
Cdd:TIGR02169 170 RKKEKALEELEEVE---ENIERLDLIIDEKRQQLErlRREREKAERYQALLKE----KREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 307 DRERAEsLSAEMQVLTEKLLLERQEYEKLQQnelqsqSLLQQEKELSAHLQQQLCSFQEEMTSernvFKEQLKLALDELD 386
Cdd:TIGR02169 243 ERQLAS-LEEELEKLTEEISELEKRLEEIEQ------LLEELNKKIKDLGEEEQLRVKEKIGE----LEAEIASLERSIA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 387 AVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEKYSD------TAQTLRDVTAQLE 460
Cdd:TIGR02169 312 EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAEleevdkEFAETRDELKDYR 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 461 SYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQ---NSSTLKEAEIKEITSSYLEKI 537
Cdd:TIGR02169 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleiKKQEWKLEQLAADLSKYEQEL 471
|
330 340 350
....*....|....*....|....*....|....
gi 47059017 538 TDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTE 571
Cdd:TIGR02169 472 YDLKEEYDRVEKELSKLQRELAEAEAQARASEER 505
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
170-529 |
3.55e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.92 E-value: 3.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 170 ELMKLRNKRETKmrsmmakqegmeLKLQATQKDLIESKGKIVQLEGKLVSIEKEKID-EKSETEKLLEYIEEiscasdQV 248
Cdd:TIGR02169 199 QLERLRREREKA------------ERYQALLKEKREYEGYELLKEKEALERQKEAIErQLASLEEELEKLTE------EI 260
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 249 EKYKLDIAQLEEDLKEKDREIlcLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKdRERAESLSAEMQVLTEKLLLE 328
Cdd:TIGR02169 261 SELEKRLEEIEQLLEELNKKI--KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERE-LEDAEERLAKLEAEIDKLLAE 337
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 329 RQEYEK-LQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFkeqlklalDELDAVQQKKEqseklvkQLEEETK 407
Cdd:TIGR02169 338 IEELEReIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETR--------DELKDYREKLE-------KLKREIN 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 408 STAEQLRRLDDLLREKEIELEKrtaAHAQATVIAQE--KYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVA 485
Cdd:TIGR02169 403 ELKRELDRLQEELQRLSEELAD---LNAAIAGIEAKinELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 47059017 486 MAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEI 529
Cdd:TIGR02169 480 RVEKELSKLQRELAEAEAQARASEERVRGGRAVEEVLKASIQGV 523
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
73-668 |
3.75e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 3.75e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 73 VSKKESQKnDKDVKRLEKEIHVLLQERGTQDkRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTEL-TRANELL 151
Cdd:PRK02224 222 IERYEEQR-EQARETRDEADEVLEEHEERRE-ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELeEERDDLL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 152 KSKFSEDAHQKnmrTLSLELMKLRNKRETKMRSMMAKQegmeLKLQATQKDLIESKGKIVQLEgklvsiekEKIDEKSET 231
Cdd:PRK02224 300 AEAGLDDADAE---AVEARREELEDRDEELRDRLEECR----VAAQAHNEEAESLREDADDLE--------ERAEELREE 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 232 EKLLEyiEEISCASDQVEKYKLDIAQLEEDLKEkdreilclkqsLEEKVSFSK-QIEDLTVKCQLLEAERDDLvskdRER 310
Cdd:PRK02224 365 AAELE--SELEEAREAVEDRREEIEELEEEIEE-----------LRERFGDAPvDLGNAEDFLEELREERDEL----RER 427
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 311 AESLSAEMQVLTEKLllerQEYEKLQqnELQSQSLLQQEKELSAHLqqqlcsfqeEMTSERNVFKEQLKLALDEL----D 386
Cdd:PRK02224 428 EAELEATLRTARERV----EEAEALL--EAGKCPECGQPVEGSPHV---------ETIEEDRERVEELEAELEDLeeevE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 387 AVQQKKEQSEKLVKqLEEETKSTAEQLRRLDDLLREKEIELEKRtaahaqatviaqekySDTAQTLRDVTAQLESyksst 466
Cdd:PRK02224 493 EVEERLERAEDLVE-AEDRIERLEERREDLEELIAERRETIEEK---------------RERAEELRERAAELEA----- 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 467 lkeiedlklENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAeikeitssyLEKITDLQNQLRQ 546
Cdd:PRK02224 552 ---------EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAA---------IADAEDEIERLRE 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 547 QNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLlyEELFDKTKPFQQ-------QLDAFEAEKQALLNEHGATQ---E 616
Cdd:PRK02224 614 KREALAELNDERRERLAEKRERKRELEAEFDEARI--EEAREDKERAEEyleqveeKLDELREERDDLQAEIGAVEnelE 691
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|..
gi 47059017 617 QLSKIRDSyaqllgHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLakRKQN 668
Cdd:PRK02224 692 ELEELRER------REALENRVEALEALYDEAEELESMYGDLRAEL--RQRN 735
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
279-608 |
4.58e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 4.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 279 KVSFSKQIEDLTVKCQLLEAERDDLVSKDRE---RAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAH 355
Cdd:TIGR02169 669 SRSEPAELQRLRERLEGLKRELSSLQSELRRienRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSS 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 356 LQQQLCSFQEEMT------SERNVFKEQLKLALDELDAvqqkkEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEK 429
Cdd:TIGR02169 749 LEQEIENVKSELKeleariEELEEDLHKLEEALNDLEA-----RLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNR 823
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 430 RTAAHAQAtviaqekySDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQI--LTAESTNQE 507
Cdd:TIGR02169 824 LTLEKEYL--------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLgdLKKERDELE 895
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 508 YA-KVVQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRL----- 581
Cdd:TIGR02169 896 AQlRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALepvnm 975
|
330 340 350
....*....|....*....|....*....|.
gi 47059017 582 ----LYEELFDKTKPFQQQLDAFEAEKQALL 608
Cdd:TIGR02169 976 laiqEYEEVLKRLDELKEKRAKLEEERKAIL 1006
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
145-662 |
5.54e-07 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 53.20 E-value: 5.54e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 145 TRANELLKSKFSEDAHQ-KNMRTLSLELMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKE 223
Cdd:pfam15921 137 SQSQEDLRNQLQNTVHElEAAKCLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSILVDFEEASGKKIYEHDSMSTMHFR 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 224 KIDEkSETEKLLEYIEEISCASDQVEKYKldiAQLEEDLKEKDREILCLKQSLEEKvsfskqIEDLTVKCQLLEAERDDL 303
Cdd:pfam15921 217 SLGS-AISKILRELDTEISYLKGRIFPVE---DQLEALKSESQNKIELLLQQHQDR------IEQLISEHEVEITGLTEK 286
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 304 VSKDRERAESLSAEMQVLTEKLLLERQEY----EKLQQNELQSQSLLQQEKELSA----HLQQQLCSFQEEMT---SERN 372
Cdd:pfam15921 287 ASSARSQANSIQSQLEIIQEQARNQNSMYmrqlSDLESTVSQLRSELREAKRMYEdkieELEKQLVLANSELTearTERD 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 373 VFKE-------QLKLALDELDAVQQK----KEQSEKL----------VKQLEEETKSTAEQLRRLDDLLREKEIELEkrt 431
Cdd:pfam15921 367 QFSQesgnlddQLQKLLADLHKREKElsleKEQNKRLwdrdtgnsitIDHLRRELDDRNMEVQRLEALLKAMKSECQ--- 443
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 432 aAHAQATVIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKV 511
Cdd:pfam15921 444 -GQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL 522
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 512 -------VQDLQNSST--------LKEAEIKEITSSYLEKITDLqnqLRQQNEDFRKQLEEE----GAKMTEK---ETAV 569
Cdd:pfam15921 523 rsrvdlkLQELQHLKNegdhlrnvQTECEALKLQMAEKDKVIEI---LRQQIENMTQLVGQHgrtaGAMQVEKaqlEKEI 599
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 570 TELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNehgATQEQLSKIRDsyaqllghqnlkqkikhvvkLKDENS 649
Cdd:pfam15921 600 NDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVN---AGSERLRAVKD--------------------IKQERD 656
|
570
....*....|...
gi 47059017 650 QLKSEVSKLRSQL 662
Cdd:pfam15921 657 QLLNEVKTSRNEL 669
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
284-557 |
6.10e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 6.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 284 KQIEDLTVKCQLLEAERDDLvskdRERAESLSAEMQVLTEKllleRQEYEKLQQNELQSQSLLQQEKELSAhLQQQLcsf 363
Cdd:COG4913 610 AKLAALEAELAELEEELAEA----EERLEALEAELDALQER----REALQRLAEYSWDEIDVASAEREIAE-LEAEL--- 677
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 364 qEEMTSERNVF---KEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQ---A 437
Cdd:COG4913 678 -ERLDASSDDLaalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEerfA 756
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 438 TVIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDlklenltlqekvAMAE--KRVEDVQQQILTAESTNQEYAKVVQDL 515
Cdd:COG4913 757 AALGDAVERELRENLEERIDALRARLNRAEEELER------------AMRAfnREWPAETADLDADLESLPEYLALLDRL 824
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 47059017 516 QNSStL--KEAEIKE-ITSSYLEKITDLQNQLRQQNEDFRKQLEE 557
Cdd:COG4913 825 EEDG-LpeYEERFKElLNENSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
376-673 |
6.29e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.14 E-value: 6.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 376 EQLKLALDELDAVQQKKEQSEKLVKQLEEetksTAEQLRRLDDLLREKEIELEKRTAaHAQATVIAQEKYSDTAQTLRDV 455
Cdd:TIGR02168 155 EERRAIFEEAAGISKYKERRKETERKLER----TRENLDRLEDILNELERQLKSLER-QAEKAERYKELKAELRELELAL 229
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 456 TA----QLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITS 531
Cdd:TIGR02168 230 LVlrleELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 532 SylekitdlQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEInkwrllyEELFDKTKPFQQQLDAFEAEKQALLNEH 611
Cdd:TIGR02168 310 R--------LANLERQLEELEAQLEELESKLDELAEELAELEEKL-------EELKEELESLEAELEELEAELEELESRL 374
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47059017 612 GATQEQLSKIRDSYAQLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLAKRKQNELRLQ 673
Cdd:TIGR02168 375 EELEEQLETLRSKVAQLE--LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
195-412 |
1.22e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 1.22e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 195 KLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEiscASDQVEKYKLDIAQLEEDLKEKDREILCLKQ 274
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAA---LARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 275 SLEEKvsfSKQIEDLTVKCQ----------LLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQS 344
Cdd:COG4942 98 ELEAQ---KEELAELLRALYrlgrqpplalLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059017 345 LLQQEKELSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQ 412
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
168-662 |
1.49e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 1.49e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 168 SLELMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQ 247
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 248 VEKYKLDIAQLEEDLKEKDREILCLK---QSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRE---RAESLSAEMQVL 321
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKkeiEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREiekRLSRLEEEINGI 326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 322 TEKLllerqeyEKLQQNELQSQSLLQQEKELS---AHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKL 398
Cdd:PRK03918 327 EERI-------KELEEKEERLEELKKKLKELEkrlEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 399 VKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQE-KYSDTAQTLRDVTAQLESYkSSTLKEIEDLK--- 474
Cdd:PRK03918 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRElTEEHRKELLEEYTAELKRI-EKELKEIEEKErkl 478
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 475 LENLTLQEKVAMAEKRV---EDVQQQILTAESTNQEY--AKVVQDLQNSSTLKEAEIK-----EITSSYLEKITDLQNQL 544
Cdd:PRK03918 479 RKELRELEKVLKKESELiklKELAEQLKELEEKLKKYnlEELEKKAEEYEKLKEKLIKlkgeiKSLKKELEKLEELKKKL 558
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 545 RQQNEDFRKQLEEEGAKMTEKE----TAVTELTMEINKWRLLYEElFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSK 620
Cdd:PRK03918 559 AELEKKLDELEEELAELLKELEelgfESVEELEERLKELEPFYNE-YLELKDAEKELEREEKELKKLEEELDKAFEELAE 637
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 47059017 621 IRDSYAQLLGHQNLKQKI---KHVVKLKDENSQLKSEVSKLRSQL 662
Cdd:PRK03918 638 TEKRLEELRKELEELEKKyseEEYEELREEYLELSRELAGLRAEL 682
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
76-680 |
1.81e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.60 E-value: 1.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 76 KESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELtranELLKSKF 155
Cdd:PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL----EELKEEI 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 156 SEdahqKNMRTLSLElmklrnkretkmrsmmAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIE--KEKIDEKSETEK 233
Cdd:PRK03918 241 EE----LEKELESLE----------------GSKRKLEEKIRELEERIEELKKEIEELEEKVKELKelKEKAEEYIKLSE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 234 LL-EYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAE 312
Cdd:PRK03918 301 FYeEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 313 SLSAEMQVLTEKLLLERQEYEKLQqnelqsqsllQQEKELsahlqqqlcsfqEEMTSERNVFKEQLKLALDELDAVQQK- 391
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIE----------EEISKI------------TARIGELKKEIKELKKAIEELKKAKGKc 438
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 392 --------KEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEK-RTAAHAQATVIaqeKYSDTAQTLRDVTAQLESY 462
Cdd:PRK03918 439 pvcgreltEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRElEKVLKKESELI---KLKELAEQLKELEEKLKKY 515
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 463 kssTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSYLEKITDLQN 542
Cdd:PRK03918 516 ---NLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEE 592
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 543 QLRQQNEDFRKQLEEEGAKmteketavTELTMEINKWRLLYEELFDKTKPFQQQLDAFE-AEKQALLNEHGATQEQLSKI 621
Cdd:PRK03918 593 RLKELEPFYNEYLELKDAE--------KELEREEKELKKLEEELDKAFEELAETEKRLEeLRKELEELEKKYSEEEYEEL 664
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 622 RDSYAQLlgHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLAKRKQNELRLQgELDKAL 680
Cdd:PRK03918 665 REEYLEL--SRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE-KLEKAL 720
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
375-558 |
1.98e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.98e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 375 KEQLKlALDELDAVQQKKEQSEKLVKQLEEE-TKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEKYSDTAQTLR 453
Cdd:COG4913 248 REQIE-LLEPIRELAERYAAARERLAELEYLrAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELD 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 454 DVTAQlesYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSY 533
Cdd:COG4913 327 ELEAQ---IRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEAL 403
|
170 180
....*....|....*....|....*
gi 47059017 534 LEKITDLQNQLRQQNEDFRkQLEEE 558
Cdd:COG4913 404 EEALAEAEAALRDLRRELR-ELEAE 427
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
66-679 |
3.34e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.83 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 66 AKKAKTLVSKKEsQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELT 145
Cdd:TIGR02168 209 AEKAERYKELKA-ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQ 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 146 RANELLKSKFSEdahqknmrtLSLELMKLRNKRETKMRSMMAKQEGMEL---KLQATQKDLIESKGKIVQLEGKLVSIEK 222
Cdd:TIGR02168 288 KELYALANEISR---------LEQQKQILRERLANLERQLEELEAQLEElesKLDELAEELAELEEKLEELKEELESLEA 358
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 223 EKIDEKSETEKLLEYIEEiscASDQVEKYKLDIAQLEEDLKEKDREILCLKqsleekvsfsKQIEDLTVKCQLLEAERDD 302
Cdd:TIGR02168 359 ELEELEAELEELESRLEE---LEEQLETLRSKVAQLELQIASLNNEIERLE----------ARLERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 303 LvskdreRAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMtsernvfkEQLKLAL 382
Cdd:TIGR02168 426 L------LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAEREL--------AQLQARL 491
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 383 DELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLR---EKEIELEKRTAAHAQATVIaqekysDTAQTLRDVTAQL 459
Cdd:TIGR02168 492 DSLERLQENLEGFSEGVKALLKNQSGLSGILGVLSELISvdeGYEAAIEAALGGRLQAVVV------ENLNAAKKAIAFL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 460 ESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSS----TLKEAEIKEITSSYLE 535
Cdd:TIGR02168 566 KQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGVlvvdDLDNALELAKKLRPGY 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 536 KITDLQNQL------------RQQNEDF--RKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELfdktkpfQQQLDAFE 601
Cdd:TIGR02168 646 RIVTLDGDLvrpggvitggsaKTNSSILerRREIEELEEKIEELEEKIAELEKALAELRKELEEL-------EEELEQLR 718
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059017 602 AEKQALLNEHGATQEQLSKIRDSYAQLLghQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLAKRKQNELRLQGELDKA 679
Cdd:TIGR02168 719 KELEELSRQISALRKDLARLEAEVEQLE--ERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQL 794
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
375-557 |
6.53e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 375 KEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQ-EKYSDTAQTLR 453
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAElERLDASSDDLA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 454 DVTAQLESYKsstlKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSS---TLKEAEIKEIT 530
Cdd:COG4913 689 ALEEQLEELE----AELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALleeRFAAALGDAVE 764
|
170 180
....*....|....*....|....*..
gi 47059017 531 SSYLEKITDLQNQLRQQNEDFRKQLEE 557
Cdd:COG4913 765 RELRENLEERIDALRARLNRAEEELER 791
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
75-585 |
1.27e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.52 E-value: 1.27e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 75 KKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDME---SELENTEANLNAPVTEKPSLSANNASLEKRLTELTRANELL 151
Cdd:PRK03918 199 EKELEEVLREINEISSELPELREELEKLEKEVKELEelkEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEEL 278
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 152 KSKFSEDAHQKNMRTLSLELMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEgKLVSIEKEKIDEKSET 231
Cdd:PRK03918 279 EEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE-ELKKKLKELEKRLEEL 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 232 EKLLEYIEEISCASDQVEKYKLDIA-------------------QLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVK 292
Cdd:PRK03918 358 EERHELYEEAKAKKEELERLKKRLTgltpeklekeleelekakeEIEEEISKITARIGELKKEIKELKKAIEELKKAKGK 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 293 C-----QLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLqQNELQSQSLLQQEKELSAHL---QQQLCSFQ 364
Cdd:PRK03918 438 CpvcgrELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL-EKVLKKESELIKLKELAEQLkelEEKLKKYN 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 365 EEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKR---TAAHAQATVIA 441
Cdd:PRK03918 517 LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfeSVEELEERLKE 596
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 442 QEKYSDTAQTLRDVTAQLEsyksSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQI--LTAESTNQEYAKVVQDLQNSS 519
Cdd:PRK03918 597 LEPFYNEYLELKDAEKELE----REEKELKKLEEELDKAFEELAETEKRLEELRKELeeLEKKYSEEEYEELREEYLELS 672
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 520 TL---KEAEIKEITSSYLEKITDLQNQLRQQNEdfRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEE 585
Cdd:PRK03918 673 RElagLRAELEELEKRREEIKKTLEKLKEELEE--REKAKKELEKLEKALERVEELREKVKKYKALLKE 739
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
79-416 |
1.34e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 79 QKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELTRANELLkskfsed 158
Cdd:TIGR02168 673 LERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQL------- 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 159 ahQKNMRTLSLELMKLRNKRetkmrsmmakqEGMELKLQATQKDLIESKGKIVQLEGKlvsIEKEKIDEKSETEKLLEYI 238
Cdd:TIGR02168 746 --EERIAQLSKELTELEAEI-----------EELEERLEEAEEELAEAEAEIEELEAQ---IEQLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 239 EEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKvsfSKQIEDLTVKCQLLEAERDDLvskdRERAESLSAEM 318
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEEL---SEDIESLAAEIEELEELIEEL----ESELEALLNER 882
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 319 QVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFQ---EEMTSERNVFKEQL-KLALDELDAVQQKKEQ 394
Cdd:TIGR02168 883 ASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLElrlEGLEVRIDNLQERLsEEYSLTLEEAEALENK 962
|
330 340
....*....|....*....|..
gi 47059017 395 SEKLVKQLEEETKSTAEQLRRL 416
Cdd:TIGR02168 963 IEDDEEEARRRLKRLENKIKEL 984
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
341-568 |
1.70e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 47.84 E-value: 1.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 341 QSQSLLQQEKELSAhLQQQLcsfqEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLL 420
Cdd:COG4942 18 QADAAAEAEAELEQ-LQQEI----AELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 421 REKEIELEKRTAAHAQATVIAQE-----------KYSDTAQTLRDVTAqLESYKSSTLKEIEDLKLENLTLQEKVAMAEK 489
Cdd:COG4942 93 AELRAELEAQKEELAELLRALYRlgrqpplalllSPEDFLDAVRRLQY-LKYLAPARREQAEELRADLAELAALRAELEA 171
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 490 RVEDVQQQILTAESTNQEYAKvvqdLQNSSTLKEAEIKEITSSYLEKITDLQNQlRQQNEDFRKQLEEEGAKMTEKETA 568
Cdd:COG4942 172 ERAELEALLAELEEERAALEA----LKAERQKLLARLEKELAELAAELAELQQE-AEELEALIARLEAEAAAAAERTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
232-680 |
2.10e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.99 E-value: 2.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 232 EKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEkvSFSKQIEDLTVKCQLLEAERDDLvskdRERA 311
Cdd:COG4913 288 RRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRG--NGGDRLEQLEREIERLERELEER----ERRR 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 312 ESLSAEMQVLTEKLLLERQEYEKLQQnelQSQSLLQQEKELSAHLQQQLcsfqEEMTSERNVFKEQLKLALDELDAVQQK 391
Cdd:COG4913 362 ARLEALLAALGLPLPASAEEFAALRA---EAAALLEALEEELEALEEAL----AEAEAALRDLRRELRELEAEIASLERR 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 392 K----EQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAA----HAQATVI---------AQEKYSDTAQTLRD 454
Cdd:COG4913 435 KsnipARLLALRDALAEALGLDEAELPFVGELIEVRPEEERWRGAIervlGGFALTLlvppehyaaALRWVNRLHLRGRL 514
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 455 VTAQLESykssTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAEStnqEYAKV--VQDLQNSST--LKEAEIKEIT 530
Cdd:COG4913 515 VYERVRT----GLPDPERPRLDPDSLAGKLDFKPHPFRAWLEAELGRRF---DYVCVdsPEELRRHPRaiTRAGQVKGNG 587
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 531 SSYlEKitDLQNQLRQQN---EDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEK--Q 605
Cdd:COG4913 588 TRH-EK--DDRRRIRSRYvlgFDNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIdvA 664
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47059017 606 ALLNEHGATQEQLSKIRDSYAQLlghQNLKQKIKhvvklkdensQLKSEVSKLRSQLAKRKQNELRLQGELDKAL 680
Cdd:COG4913 665 SAEREIAELEAELERLDASSDDL---AALEEQLE----------ELEAELEELEEELDELKGEIGRLEKELEQAE 726
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
23-557 |
2.26e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 2.26e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 23 AYDVKTSESTKGPVSFQKSQRFKNQRESQQNLNIDKDTTLLASaKKAKTLVSKKESQKNDKDVKRLEKEIHVLLQERGTQ 102
Cdd:PTZ00121 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK-KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 103 DKRiqdmESELENTEANLNAPVTEKPSLSANNA-SLEKRLTELTRANELLKSKFSEDAHQKNMRTLSLELMK---LRNKR 178
Cdd:PTZ00121 1365 KAE----AAEKKKEEAKKKADAAKKKAEEKKKAdEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKadeAKKKA 1440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 179 ETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLegklvsieKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQL 258
Cdd:PTZ00121 1441 EEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA--------KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKA 1512
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 259 EEDLK-EKDREILCLKQSLE-EKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEmqvlTEKLLLERQEYEKLQ 336
Cdd:PTZ00121 1513 DEAKKaEEAKKADEAKKAEEaKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE----EDKNMALRKAEEAKK 1588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 337 QNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFK-EQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRR 415
Cdd:PTZ00121 1589 AEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 416 LDDLLREKEIELEKRTAAHAQatviAQEKYSDTAQTLRDVtAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQ 495
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKK----AAEALKKEAEEAKKA-EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDK 1743
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 47059017 496 QQILTAESTNQEYAKVVQdlqnsstLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEE 557
Cdd:PTZ00121 1744 KKAEEAKKDEEEKKKIAH-------LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
374-679 |
2.66e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.76 E-value: 2.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 374 FKEQLKLALDELDAVqqkkEQSEKLVKQLEEETKSTAEQLRR-LDDLLREKEIELEKRtaaHAQATVIAQEKysdtaQTL 452
Cdd:TIGR02169 168 FDRKKEKALEELEEV----EENIERLDLIIDEKRQQLERLRReREKAERYQALLKEKR---EYEGYELLKEK-----EAL 235
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 453 RDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQIltAESTNQEYAKVVQDLQnSSTLKEAEIKEITSS 532
Cdd:TIGR02169 236 ERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKI--KDLGEEEQLRVKEKIG-ELEAEIASLERSIAE 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 533 YLEKITDLQNQLRQ----------QNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEA 602
Cdd:TIGR02169 313 KERELEDAEERLAKleaeidkllaEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059017 603 EKQALLNEHGATQEQLSKIRDSYAQLLGHQ-NLKQKIKhvvKLKDENSQLKSEVSKLRSQLAKRKQNELRLQGELDKA 679
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELaDLNAAIA---GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKY 467
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
356-620 |
3.58e-05 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 47.21 E-value: 3.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 356 LQQQLCSF--QEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLlrekeieleKRTAA 433
Cdd:PRK11281 41 VQAQLDALnkQKLLEAEDKLVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEAL---------KDDND 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 434 haqatviaqekySDTAQTLRDVT-AQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVV 512
Cdd:PRK11281 112 ------------EETRETLSTLSlRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 513 QDLQNSSTLKEAEIK---EITSSYLEKITDLQNQLRQQNED----FRKQLEEEGAKMTEKETAVTELTMEINKWRLlyeE 585
Cdd:PRK11281 180 KGGKVGGKALRPSQRvllQAEQALLNAQNDLQRKSLEGNTQlqdlLQKQRDYLTARIQRLEHQLQLLQEAINSKRL---T 256
|
250 260 270
....*....|....*....|....*....|....*.
gi 47059017 586 LFDKT-KPFQQQLDAFEAEKQALLNEHGATQEQLSK 620
Cdd:PRK11281 257 LSEKTvQEAQSQDEAARIQANPLVAQELEINLQLSQ 292
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
84-335 |
3.81e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 3.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 84 DVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAP------------VTEKPSLSANNASLEKRLTELTRanELL 151
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlshsripeiQAELSKLEEEVSRIEARLREIEQ--KLN 822
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 152 KSKFSEDAHQKNMRTLSLELMKLRNKREtkmrSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSET 231
Cdd:TIGR02169 823 RLTLEKEYLEKEIQELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQL 898
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 232 EKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVS------ 305
Cdd:TIGR02169 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPvnmlai 978
|
250 260 270
....*....|....*....|....*....|
gi 47059017 306 KDRERAESLSAEMQVLTEKLLLERQEYEKL 335
Cdd:TIGR02169 979 QEYEEVLKRLDELKEKRAKLEEERKAILER 1008
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
305-552 |
6.54e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 6.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 305 SKDRERAESLSAE-MQVLTEKLLLERQEYEKLQQNELQSQsLLQQEKELSAhLQQQLCSFQEE-----MTSERNVFKEQL 378
Cdd:COG3206 144 SPDPELAAAVANAlAEAYLEQNLELRREEARKALEFLEEQ-LPELRKELEE-AEAALEEFRQKnglvdLSEEAKLLLQQL 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 379 KLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDD-----LLREKEIELEKRTAAhaqatviAQEKYSDTAQTLR 453
Cdd:COG3206 222 SELESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQspviqQLRAQLAELEAELAE-------LSARYTPNHPDVI 294
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 454 DVTAQLESYKSSTLKEIE----DLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSstlkeaeiKEI 529
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQrilaSLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVA--------REL 366
|
250 260
....*....|....*....|...
gi 47059017 530 TSSYLEKITDLQNQLRQQNEDFR 552
Cdd:COG3206 367 YESLLQRLEEARLAEALTVGNVR 389
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
66-707 |
1.12e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.90 E-value: 1.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 66 AKKAKTLVSKKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLE-KRLTEL 144
Cdd:PTZ00121 1114 ARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEvRKAEEL 1193
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 145 TRANELLKS----KFSEDAHQKNMRTLSLE--LMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLV 218
Cdd:PTZ00121 1194 RKAEDARKAeaarKAEEERKAEEARKAEDAkkAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIK 1273
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 219 SIEKEKIDEKSETEKL-----LEYIEEISCASDQveKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKC 293
Cdd:PTZ00121 1274 AEEARKADELKKAEEKkkadeAKKAEEKKKADEA--KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAE 1351
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 294 QLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNV 373
Cdd:PTZ00121 1352 AEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 374 FKEQLKLALDELDAVQQKKEQSEKlvKQLEEETKSTAEQLRRLDDLLRE----KEIELEKRTAAHAQATVIAQEKYSDTA 449
Cdd:PTZ00121 1432 KADEAKKKAEEAKKADEAKKKAEE--AKKAEEAKKKAEEAKKADEAKKKaeeaKKADEAKKKAEEAKKKADEAKKAAEAK 1509
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 450 QTLRDVTAQLESYKSSTLKEIEDL-KLENLTLQEKVAMAE--KRVEDVQ--QQILTAESTNQEYAKVVQDLQNSSTLKEA 524
Cdd:PTZ00121 1510 KKADEAKKAEEAKKADEAKKAEEAkKADEAKKAEEKKKADelKKAEELKkaEEKKKAEEAKKAEEDKNMALRKAEEAKKA 1589
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 525 E---IKEITSSYLEKITDLQNQLRQQN------------EDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELfdK 589
Cdd:PTZ00121 1590 EearIEEVMKLYEEEKKMKAEEAKKAEeakikaeelkkaEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE--A 1667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 590 TKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQLLGHQNLKQKIK-HVVKLKDENSQLKSEVSKLRSQLAKRKQN 668
Cdd:PTZ00121 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKaEELKKAEEENKIKAEEAKKEAEEDKKKAE 1747
|
650 660 670 680
....*....|....*....|....*....|....*....|
gi 47059017 669 ELRL-QGELDKALGIRHFDPSKAFCHESKENVTLKTPLKE 707
Cdd:PTZ00121 1748 EAKKdEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDE 1787
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
75-279 |
1.86e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.37 E-value: 1.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 75 KKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNApvtekpsLSANNASLEKRLTELTRANELLKSK 154
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA-------LEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 155 FSE--DAHQKNMRTLSLELMKLRN------KRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKID 226
Cdd:COG4942 106 LAEllRALYRLGRQPPLALLLSPEdfldavRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 47059017 227 EKSETEKLLEYIEE-ISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEK 279
Cdd:COG4942 186 ERAALEALKAERQKlLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
191-429 |
2.15e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 44.53 E-value: 2.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 191 GMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKidEKSETEKLLEYIEEIScasDQVEKyklDIAQLEEDLKEKDREIl 270
Cdd:PRK05771 46 RKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV--SVKSLEELIKDVEEEL---EKIEK---EIKELEEEISELENEI- 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 271 clkQSLEEKVSFSKQIEDLTVKCQLLEAERD---DLVSKDRERAESLSAEMQVltEKLLLERQEYEKlqqnelqSQSLLQ 347
Cdd:PRK05771 117 ---KELEQEIERLEPWGNFDLDLSLLLGFKYvsvFVGTVPEDKLEELKLESDV--ENVEYISTDKGY-------VYVVVV 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 348 QEKELSAHLQQQL--CSFQEEMTSERNVFKEQLKLALDELDAVQQKKeqsEKLVKQLEEETKSTAEQLRRLDDLLrekEI 425
Cdd:PRK05771 185 VLKELSDEVEEELkkLGFERLELEEEGTPSELIREIKEELEEIEKER---ESLLEELKELAKKYLEELLALYEYL---EI 258
|
....
gi 47059017 426 ELEK 429
Cdd:PRK05771 259 ELER 262
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
284-464 |
2.50e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.52 E-value: 2.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 284 KQIEDLTVKCQLLEAERDDLVSKDRERaeslsaEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLcsf 363
Cdd:COG4913 262 ERYAAARERLAELEYLRAALRLWFAQR------RLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQI--- 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 364 QEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQE 443
Cdd:COG4913 333 RGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEA 412
|
170 180
....*....|....*....|.
gi 47059017 444 KYSDTAQTLRDVTAQLESYKS 464
Cdd:COG4913 413 ALRDLRRELRELEAEIASLER 433
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
203-657 |
3.96e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 3.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 203 LIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEIS--CASDQVEKYKLDIAQLEEDLKEKD---REILCLKQSLE 277
Cdd:pfam05483 227 LEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESrdKANQLEEKTKLQDENLKELIEKKDhltKELEDIKMSLQ 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 278 EKVSFSKQIE-DLTVK----CQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLE---RQEYEKLQQNELQSQSLLQQE 349
Cdd:pfam05483 307 RSMSTQKALEeDLQIAtktiCQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEellRTEQQRLEKNEDQLKIITMEL 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 350 KELSAHLQQQlcsfqEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELek 429
Cdd:pfam05483 387 QKKSSELEEM-----TKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQL-- 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 430 rtaahaQATVIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYA 509
Cdd:pfam05483 460 ------TAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERML 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 510 KVVQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEEEGAK---MTEKETAVTELTMEINKWRLLYEEL 586
Cdd:pfam05483 534 KQIENLEEKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKekqMKILENKCNNLKKQIENKNKNIEEL 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 587 FDKTKPFQQ-------QLDAFEAEKQALLNEHGATQEQLSKIRDSYA-----QLLGHQNLKQKIKHVVKLKDENSQLKSE 654
Cdd:pfam05483 614 HQENKALKKkgsaenkQLNAYEIKVNKLELELASAKQKFEEIIDNYQkeiedKKISEEKLLEEVEKAKAIADEAVKLQKE 693
|
...
gi 47059017 655 VSK 657
Cdd:pfam05483 694 IDK 696
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
432-627 |
4.54e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 43.28 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 432 AAHAQATVIAQEKYSDTAQTLRDVTAQLESYKS---STLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAES----T 504
Cdd:COG3883 5 ALAAPTPAFADPQIQAKQKELSELQAELEAAQAeldALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAeieeR 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 505 NQEYAKVVQDLQNS-------STLKEAE--------------IKEITSSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMT 563
Cdd:COG3883 85 REELGERARALYRSggsvsylDVLLGSEsfsdfldrlsalskIADADADLLEELKADKAELEAKKAELEAKLAELEALKA 164
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 47059017 564 EKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQ 627
Cdd:COG3883 165 ELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAA 228
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
96-532 |
5.59e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.57 E-value: 5.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 96 LQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELTRanellkskfSEDAHQKNMRTLSLELMKLR 175
Cdd:pfam15921 453 IQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTA---------SLQEKERAIEATNAEITKLR 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 176 NKRETKMRSMM-AKQEGMELKLQATQKDLIeskgkivqlegKLVSIEKEKIDE--KSETEKLLEYIEE--ISCASDQVEK 250
Cdd:pfam15921 524 SRVDLKLQELQhLKNEGDHLRNVQTECEAL-----------KLQMAEKDKVIEilRQQIENMTQLVGQhgRTAGAMQVEK 592
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 251 ykldiAQLEEDLKEKDREILCLKQSLEEKVSfskQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEmqvltekllleRQ 330
Cdd:pfam15921 593 -----AQLEKEINDRRLELQEFKILKDKKDA---KIRELEARVSDLELEKVKLVNAGSERLRAVKDI-----------KQ 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 331 EYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSE----KLVKQLEEET 406
Cdd:pfam15921 654 ERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEgsdgHAMKVAMGMQ 733
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 407 KSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEKySDTAQTLRDVTAQlesyKSSTLKEIEDLKLENLTLQEKVAM 486
Cdd:pfam15921 734 KQITAKRGQIDALQSKIQFLEEAMTNANKEKHFLKEEK-NKLSQELSTVATE----KNKMAGELEVLRSQERRLKEKVAN 808
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 47059017 487 AEKRVEDVQQQILTAES--TNQEYAKVVQDLQNSSTLKEAEIKEITSS 532
Cdd:pfam15921 809 MEVALDKASLQFAECQDiiQRQEQESVRLKLQHTLDVKELQGPGYTSN 856
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
80-333 |
6.90e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.99 E-value: 6.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 80 KNDKDVKRLEKEIHVLLQERGTqDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELtranELLKSkfseda 159
Cdd:PRK05771 63 RSYLPKLNPLREEKKKVSVKSL-EELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERL----EPWGN------ 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 160 hqknmrtLSLELMKLRNKRETKmrsmmakqegmelklqatqkdlieskgkivqleGKLVSIEKEKiDEKSETEKLLEYIE 239
Cdd:PRK05771 132 -------FDLDLSLLLGFKYVS---------------------------------VFVGTVPEDK-LEELKLESDVENVE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 240 EIScasDQVEKYKLDIAQLEEDLKEKDREILCL---KQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSA 316
Cdd:PRK05771 171 YIS---TDKGYVYVVVVVLKELSDEVEEELKKLgfeRLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLE 247
|
250
....*....|....*..
gi 47059017 317 EMQVLTEKLLLERQEYE 333
Cdd:PRK05771 248 ELLALYEYLEIELERAE 264
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
316-577 |
7.36e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.02 E-value: 7.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 316 AEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFqeeMTSERNVFKEQLKLALDELDAVqqkkEQS 395
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRLLPRL---NLLADETLADRVEEIREQLDEA----EEA 909
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 396 EKLVKQLEeetkSTAEQLRRLDDLLREKEIELEKRTAAHAQAtviaQEKYSDTAQTLRDVTAQLE-----SYKSSTLKEI 470
Cdd:PRK04863 910 KRFVQQHG----NALAQLEPIVSVLQSDPEQFEQLKQDYQQA----QQTQRDAKQQAFALTEVVQrrahfSYEDAAEMLA 981
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 471 EDLKLeNLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSyLEKIT-----DLQNQLR 545
Cdd:PRK04863 982 KNSDL-NEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQE-LQDLGvpadsGAEERAR 1059
|
250 260 270
....*....|....*....|....*....|..
gi 47059017 546 QQNEDFRKQLEEEGAKMTEKETAVTELTMEIN 577
Cdd:PRK04863 1060 ARRDELHARLSANRSRRNQLEKQLTFCEAEMD 1091
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
389-653 |
7.44e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.80 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 389 QQKKEQSEKL----VKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEK--------YSDTAQTLRDVT 456
Cdd:pfam17380 287 RQQQEKFEKMeqerLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERerelerirQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 457 AQLESYKSSTLKEIEDLKLENLTLQEKV-----------AMAEKRVEDVQQQILTAESTNQEYAKVVQ-DLQNSSTLKEA 524
Cdd:pfam17380 367 QEEIAMEISRMRELERLQMERQQKNERVrqeleaarkvkILEEERQRKIQQQKVEMEQIRAEQEEARQrEVRRLEEERAR 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 525 EIKEITSSYLEKITDLQnQLRQQNEDFRKQ-------------LEEEGAKMTEKETAVTELTM--EINKWRLLYEELFDK 589
Cdd:pfam17380 447 EMERVRLEEQERQQQVE-RLRQQEEERKRKklelekekrdrkrAEEQRRKILEKELEERKQAMieEERKRKLLEKEMEER 525
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 47059017 590 TKPFQQQLDAFEAE----KQALLNEHGATQEQLSKIRDSYAQLLGHQNLKQKIKHVVKLKDENSQLKS 653
Cdd:pfam17380 526 QKAIYEEERRREAEeerrKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
39-498 |
8.31e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 8.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 39 QKSQRFKNQRESQQNLNIDKDTTLLASAKKAKTLVSKKESQKNDKdvKRLEKEIHVLLQERGTQDKRIQDMESELENTEA 118
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEEL--LEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 119 NLNApvTEKPSLSANNASLEKRLTELTRANELLKSKFSEDAHQKNMRTLSLELMKLRNKRETKMRSMMAKQEGMELKLQA 198
Cdd:COG1196 422 ELEE--LEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 199 TQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEkykldiaQLEEDLKEKDREILCLKQSLEE 278
Cdd:COG1196 500 EADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQN-------IVVEDDEVAAAAIEYLKAAKAG 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 279 KVSFSkqiedltvkcQLLEAERDDLVSKDRERAESLSAEmqVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQ 358
Cdd:COG1196 573 RATFL----------PLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAV 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 359 QLCSFQEEMTSERnvfkEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQAT 438
Cdd:COG1196 641 TLAGRLREVTLEG----EGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEER 716
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 439 VIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQI 498
Cdd:COG1196 717 LEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREI 776
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
44-578 |
9.18e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.70 E-value: 9.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 44 FKNQRESQQNLNIDKDTTLLASAKKAKTLVSKKESQKN-DKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNa 122
Cdd:TIGR04523 178 LEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQKNKSlESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLN- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 123 pvTEKPSLSANNASLEKRLTELTRANELLKSKfsedahQKNMRTLSLELMKLRNKRETKMRSMMAKQ-EGMELKLQATQK 201
Cdd:TIGR04523 257 --QLKDEQNKIKKQLSEKQKELEQNNKKIKEL------EKQLNQLKSEISDLNNQKEQDWNKELKSElKNQEKKLEEIQN 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 202 DLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEiscASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVS 281
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEE---KQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 282 FSKQIEDltvKCQLLEAERddlvskdreraESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLC 361
Cdd:TIGR04523 406 LNQQKDE---QIKKLQQEK-----------ELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLK 471
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 362 SFQEEMTSERNVFKE---QLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKrtaahaqat 438
Cdd:TIGR04523 472 VLSRSINKIKQNLEQkqkELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD--------- 542
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 439 vIAQEKYSDTAQTLRDvtaQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNS 518
Cdd:TIGR04523 543 -LEDELNKDDFELKKE---NLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKE 618
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 519 STLKEAEIKEItSSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINK 578
Cdd:TIGR04523 619 LEKAKKENEKL-SSIIKNIKSKKNKLKQEVKQIKETIKEIRNKWPEIIKKIKESKTKIDD 677
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
129-691 |
9.38e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.65 E-value: 9.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 129 SLSANNASLEKRLTELTRAneLLKSKFSEDAHQKNMRTLSLELMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKG 208
Cdd:TIGR00618 216 TYHERKQVLEKELKHLREA--LQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERINRARKAA 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 209 KIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIED 288
Cdd:TIGR00618 294 PLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEVATSIREISCQ 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 289 LTVKCQLLEAERDDLvSKDRERAESLSAEMQVLTEklLLERQEYEKLQQNELQSQSL-LQQEKELSAHLQQQLCSFQEEM 367
Cdd:TIGR00618 374 QHTLTQHIHTLQQQK-TTLTQKLQSLCKELDILQR--EQATIDTRTSAFRDLQGQLAhAKKQQELQQRYAELCAAAITCT 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 368 TSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLddllREKEIELEKRTAAHAQATVIAQEKYSD 447
Cdd:TIGR00618 451 AQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLEL----QEEPCPLCGSCIHPNPARQDIDNPGPL 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 448 TAQTLrdvtaQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIK 527
Cdd:TIGR00618 527 TRRMQ-----RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 528 EITSSYLEKITDLQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQAL 607
Cdd:TIGR00618 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLA 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 608 LNEHGATQEQLSKIRDSYAQ-LLGHQNLKQKIKHVVKLKDENSQ-LKSEVSKLRSQLAKRKQNELRLQGELDKALGIRHF 685
Cdd:TIGR00618 682 LQKMQSEKEQLTYWKEMLAQcQTLLRELETHIEEYDREFNEIENaSSSLGSDLAAREDALNQSLKELMHQARTVLKARTE 761
|
....*.
gi 47059017 686 DPSKAF 691
Cdd:TIGR00618 762 AHFNNN 767
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
87-667 |
1.46e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 41.96 E-value: 1.46e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 87 RLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELTRANELLKSKFSEDAHQKNMRT 166
Cdd:TIGR00606 183 RYIKALETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 167 LSLELMKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLV-SIEKEKIDEKSETEKLLEYIEEISCAS 245
Cdd:TIGR00606 263 KIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVrEKERELVDCQRELEKLNKERRLLNQEK 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 246 DQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRErAESLSAEMQVLTEKL 325
Cdd:TIGR00606 343 TELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDE-AKTAAQLCADLQSKE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 326 LLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQL----CSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQ 401
Cdd:TIGR00606 422 RLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELkfviKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKK 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 402 LEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEKySDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQ 481
Cdd:TIGR00606 502 EVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDK-MDKDEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLH 580
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 482 EK---VAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSYLEKItDLQNqLRQQNEDFRKQLEEE 558
Cdd:TIGR00606 581 SKskeINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEES-DLER-LKEEIEKSSKQRAML 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 559 GAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQLLGHQNLKQ-- 636
Cdd:TIGR00606 659 AGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQsi 738
|
570 580 590
....*....|....*....|....*....|....
gi 47059017 637 ---KIKHVVKLKDENSQLKSEVSKLRSQLAKRKQ 667
Cdd:TIGR00606 739 idlKEKEIPELRNKLQKVNRDIQRLKNDIEEQET 772
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
339-612 |
1.65e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 1.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 339 ELQSQSLLQQEKELSAHlqqQLCSFQEE--MTSERNVFKEQLKL------ALDELDAVQQKKEQSEKLVKQLEEETKSTA 410
Cdd:PLN02939 107 AIAAIDNEQQTNSKDGE---QLSDFQLEdlVGMIQNAEKNILLLnqarlqALEDLEKILTEKEALQGKINILEMRLSETD 183
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 411 EQLRrlddllrekeielekrTAAHAQATV-IAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEK 489
Cdd:PLN02939 184 ARIK----------------LAAQEKIHVeILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKA 247
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 490 R---VEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITS----SYLEKITDLQNQLR-------------QQNE 549
Cdd:PLN02939 248 ElieVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPlqydCWWEKVENLQDLLDratnqvekaalvlDQNQ 327
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47059017 550 DFRKQLEEEGAKMteKETAVTELTMEI-----NKWRLLYE-------ELFDKTKPFQQQLDAFEAEKQALLNEHG 612
Cdd:PLN02939 328 DLRDKVDKLEASL--KEANVSKFSSYKvellqQKLKLLEErlqasdhEIHSYIQLYQESIKEFQDTLSKLKEESK 400
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
282-565 |
1.72e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.03 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 282 FSKQIEDLTVKCQlleaERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLC 361
Cdd:pfam15921 83 YSHQVKDLQRRLN----ESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAK 158
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 362 SFQEEMTSERNVFKEQLKLALDELDAVQQKKEQ-----SEKLVKQLEEETKSTAEQLRRL----DDLLREKEIELekrta 432
Cdd:pfam15921 159 CLKEDMLEDSNTQIEQLRKMMLSHEGVLQEIRSilvdfEEASGKKIYEHDSMSTMHFRSLgsaiSKILRELDTEI----- 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 433 AHAQATVIAQEKYSDT--AQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQI----LTAESTNQ 506
Cdd:pfam15921 234 SYLKGRIFPVEDQLEAlkSESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLeiiqEQARNQNS 313
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 47059017 507 EYAKVVQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDF------RKQLEEEGAKMTEK 565
Cdd:pfam15921 314 MYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELtearteRDQFSQESGNLDDQ 378
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
74-503 |
2.00e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 2.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 74 SKKESQKNDKDVKRLEKEihvlLQERGTQDKRIQDMESELENTEANLNApvtekpsLSANNASLEKRLTELTRANELLKS 153
Cdd:COG4717 62 QGRKPELNLKELKELEEE----LKEAEEKEEEYAELQEELEELEEELEE-------LEAELEELREELEKLEKLLQLLPL 130
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 154 KFSEDAHQKNMRTLSLELMKLRNKRETkmrsmmakqegmelkLQATQKDLIESKGKIVQLEGKLVsiEKEKIDEKSETEK 233
Cdd:COG4717 131 YQELEALEAELAELPERLEELEERLEE---------------LRELEEELEELEAELAELQEELE--ELLEQLSLATEEE 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 234 LLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLE-----EKVSFSKQIEDLTVKCQLLEAERDDLVSKDR 308
Cdd:COG4717 194 LQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEaaaleERLKEARLLLLIAAALLALLGLGGSLLSLIL 273
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 309 ERAESLSAEMQVLTEKLLLERQEYEKLQQnELQSQSLLQQEKELSahlQQQLCSFQEEMTSERNVFKEQLKLALDELDAV 388
Cdd:COG4717 274 TIAGVLFLVLGLLALLFLLLAREKASLGK-EAEELQALPALEELE---EEELEELLAALGLPPDLSPEELLELLDRIEEL 349
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 389 QQKKEQSEKLVKQLEEEtkstaEQLRRLDDLLREKEIELEKRTAAHAQatviAQEKYSDTAQTLRDVTAQLESYKSSTLK 468
Cdd:COG4717 350 QELLREAEELEEELQLE-----ELEQEIAALLAEAGVEDEEELRAALE----QAEEYQELKEELEELEEQLEELLGELEE 420
|
410 420 430 440
....*....|....*....|....*....|....*....|
gi 47059017 469 EIEDLKLENL-----TLQEKVAMAEKRVEDVQQQILTAES 503
Cdd:COG4717 421 LLEALDEEELeeeleELEEELEELEEELEELREELAELEA 460
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
356-589 |
2.51e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 2.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 356 LQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKE--QSEKLVKQLEEETKSTAEQLRRLDDLLREkeielekrtaa 433
Cdd:COG3206 162 LEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEefRQKNGLVDLSEEAKLLLQQLSELESQLAE----------- 230
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 434 haqatviAQEKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLtlqekvamaEKRVEDVQQQILTAESTNQEYAKVVQ 513
Cdd:COG3206 231 -------ARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQL---------RAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 514 DLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEE---EGAKMTEKETAVTELTMEINKWRLLYEELFDK 589
Cdd:COG3206 295 ALRAQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQleaRLAELPELEAELRRLEREVEVARELYESLLQR 373
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
206-412 |
2.63e-03 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 40.92 E-value: 2.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 206 SKGKIVQLEGKLVSI--EKEKIDEKSETEKLLEyieeiscASDQVEKYKldiAQLEEDLKEKDREILCLKQSLEEKVSF- 282
Cdd:PRK12704 29 AEAKIKEAEEEAKRIleEAKKEAEAIKKEALLE-------AKEEIHKLR---NEFEKELRERRNELQKLEKRLLQKEENl 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 283 SKQIEDLTVKCQLLEAERddlvskdreraESLSAEMQVLTEKllleRQEYEKLQQnelqsqsllQQEKELsahlqQQLCS 362
Cdd:PRK12704 99 DRKLELLEKREEELEKKE-----------KELEQKQQELEKK----EEELEELIE---------EQLQEL-----ERISG 149
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 47059017 363 fqeeMTSERNvfKEQLklaldeLDAVQQK-KEQSEKLVKQLEEETKSTAEQ 412
Cdd:PRK12704 150 ----LTAEEA--KEIL------LEKVEEEaRHEAAVLIKEIEEEAKEEADK 188
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
252-556 |
3.83e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 3.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 252 KLDIAQLEEDLKEKDReilCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLlleRQE 331
Cdd:PRK11281 44 QLDALNKQKLLEAEDK---LVQQDLEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET---RET 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 332 YEKLQQNELQSQsLLQQEKELsAHLQQQLCSFQEEMTSERNVfKEQLKLALDEldAVQQKKEQSEKLVKQLEEETKSTAE 411
Cdd:PRK11281 118 LSTLSLRQLESR-LAQTLDQL-QNAQNDLAEYNSQLVSLQTQ-PERAQAALYA--NSQRLQQIRNLLKGGKVGGKALRPS 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 412 QLRRLD---DLLrEKEIELEKR-TAAHAQATVIAQEKYSDTaqTLRdvTAQLEsyksstlKEIEDLklENLTLQEKVAMA 487
Cdd:PRK11281 193 QRVLLQaeqALL-NAQNDLQRKsLEGNTQLQDLLQKQRDYL--TAR--IQRLE-------HQLQLL--QEAINSKRLTLS 258
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 488 EKRVEDVQQQILTAESTNqeyakvvqdlqNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLE 556
Cdd:PRK11281 259 EKTVQEAQSQDEAARIQA-----------NPLVAQELEINLQLSQRLLKATEKLNTLTQQNLRVKNWLD 316
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
192-553 |
4.05e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 40.73 E-value: 4.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 192 MELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEiscaSDQVEKYKLDIAQLEEdLKEKDREILC 271
Cdd:pfam02463 167 LKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQL----KEKLELEEEYLLYLDY-LKLNEERIDL 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 272 LKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSKDRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKE 351
Cdd:pfam02463 242 LQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 352 LSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRT 431
Cdd:pfam02463 322 EKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKS 401
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 432 AAHAQATVIAQEkySDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKV 511
Cdd:pfam02463 402 EEEKEAQLLLEL--ARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQL 479
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 47059017 512 VQDLQNSSTLKEAEIKEITSSYLEKITDLQNQLRQQNEDFRK 553
Cdd:pfam02463 480 VKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGVG 521
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
365-560 |
6.33e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.43 E-value: 6.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 365 EEMTSERNVFKEQLKLALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRtaAHAQATVIAQEK 444
Cdd:COG3883 26 SELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER--ARALYRSGGSVS 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 445 YSD---TAQTLRDVTAQLESYK---SSTLKEIEDLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNs 518
Cdd:COG3883 104 YLDvllGSESFSDFLDRLSALSkiaDADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQEA- 182
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 47059017 519 stlKEAEIKEITSSYLEKITDLQNQLRQQNEDFRKQLEEEGA 560
Cdd:COG3883 183 ---LLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAA 221
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
443-673 |
6.37e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 40.06 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 443 EKYSDTAQTLRDVTAQLESYKSSTLKEIEDLKLENLTLQEKVAMAEKRVEdvQQQILTAESTNQEYAKVVQDLQNSSTLK 522
Cdd:COG5022 810 KEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKK--RFSLLKKETIYLQSAQRVELAERQLQEL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 523 EAEIKEITSSYLEKITDLQNQLR---QQNEDFRK-------------------QLEEEGAKMTEKETAVTELTMEINKWR 580
Cdd:COG5022 888 KIDVKSISSLKLVNLELESEIIElkkSLSSDLIEnlefkteliarlkkllnniDLEEGPSIEYVKLPELNKLHEVESKLK 967
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 581 LL----------YEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKIRDSYAQLLGHQNLKQKIKHVvklkDENSQ 650
Cdd:COG5022 968 ETseeyedllkkSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSE----STELS 1043
|
250 260
....*....|....*....|...
gi 47059017 651 LKSEVSKLRSQLAKrKQNELRLQ 673
Cdd:COG5022 1044 ILKPLQKLKGLLLL-ENNQLQAR 1065
|
|
| PLN03229 |
PLN03229 |
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional |
249-547 |
6.44e-03 |
|
acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Pssm-ID: 178768 [Multi-domain] Cd Length: 762 Bit Score: 39.84 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 249 EKYKLDIAQLEEDLKEKDREILCLKQSLEEKVS--FSKQIEDLtvkcqllEAERDDLVSkdrERAESLSaemqvLTEKLL 326
Cdd:PLN03229 425 EAVKTPVRELEGEVEKLKEQILKAKESSSKPSElaLNEMIEKL-------KKEIDLEYT---EAVIAMG-----LQERLE 489
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 327 LERQEYEKLQ-QNELQSQSLLQQEKELSAHLQQQLcsfqeemtsERNVFKEQLKLALDELDAVQQKKEQSEKlvkqleee 405
Cdd:PLN03229 490 NLREEFSKANsQDQLMHPVLMEKIEKLKDEFNKRL---------SRAPNYLSLKYKLDMLNEFSRAKALSEK-------- 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 406 tKSTAEQLRR-LDDLLREKEIELEKRTAAHAQATVIAQEKYSDTAQTLRDVTAQLESYKSSTLKEIE------DLKLENL 478
Cdd:PLN03229 553 -KSKAEKLKAeINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELDDDLKEKVEKMKKEIELELAgvlksmGLEVIGV 631
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 47059017 479 TLQEKVAMAEKRVEDVQQQIltaESTNQEYAKVVQDLQNSSTLK------EAEIKEITSS----YLEKITDLQNQLRQQ 547
Cdd:PLN03229 632 TKKNKDTAEQTPPPNLQEKI---ESLNEEINKKIERVIRSSDLKskiellKLEVAKASKTpdvtEKEKIEALEQQIKQK 707
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
39-393 |
7.34e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 39.70 E-value: 7.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 39 QKSQRFKNQRESQQNLNIDKDTTLLASAKKAKTLVSKKESQKNDKDVKRLEKEIHVLLQERGTQ---------------- 102
Cdd:pfam05483 388 KKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEihdleiqltaiktsee 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 103 --DKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTELT-----RANELLKSKFSEDAHQKNMRTLSLELMKLR 175
Cdd:pfam05483 468 hyLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTlelkkHQEDIINCKKQEERMLKQIENLEEKEMNLR 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 176 NKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKIDEKSETEKLLEYIEEI-----------SCA 244
Cdd:pfam05483 548 DELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELhqenkalkkkgSAE 627
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 245 SDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSK-QIEDLTVKCQLLEAERDDLVSKDRE---RAESLSAEMQV 320
Cdd:pfam05483 628 NKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKiSEEKLLEEVEKAKAIADEAVKLQKEidkRCQHKIAEMVA 707
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 321 LTE-------KLLLERQEYEKLQQNELQSQSLLQQEKELS-AHLQQQLCSFQEEMTSERNVfKEQLKLALDELDAVQQKK 392
Cdd:pfam05483 708 LMEkhkhqydKIIEERDSELGLYKNKEQEQSSAKAALEIElSNIKAELLSLKKQLEIEKEE-KEKLKMEAKENTAILKDK 786
|
.
gi 47059017 393 E 393
Cdd:pfam05483 787 K 787
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
221-331 |
8.23e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 8.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 221 EKEKIDEKSETEKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREIlclkQSLEEKVSFSKQ-----------IEDL 289
Cdd:COG2433 395 PEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERI----ERLERELSEARSeerreirkdreISRL 470
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 47059017 290 TVKCQLLEAERDDLvskdRERAESLSAEMQVLTEKLLLERQE 331
Cdd:COG2433 471 DREIERLERELEEE----RERIEELKRKLERLKELWKLEHSG 508
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
380-622 |
8.33e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 38.98 E-value: 8.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 380 LALDELDAVQQKKEQSEKLVKQLEEETKSTAEQLRRlddlLREKEIELEKRTAAHAQATVIAQEKYSDTAQTLRDVTAQL 459
Cdd:COG4942 10 LLALAAAAQADAAAEAEAELEQLQQEIAELEKELAA----LKKEEKALLKQLAALERRIAALARRIRALEQELAALEAEL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 460 ESYKSSTLKEIEDLKLENLTLQEKVAMAEKRvedVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEItssylEKITD 539
Cdd:COG4942 86 AELEKEIAELRAELEAQKEELAELLRALYRL---GRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-----EELRA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 540 LQNQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLS 619
Cdd:COG4942 158 DLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAA 237
|
...
gi 47059017 620 KIR 622
Cdd:COG4942 238 AAA 240
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
75-154 |
8.52e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 39.46 E-value: 8.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 75 KKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESEL------ENTEANLNAPVTekpSLSANNASLEKRLTELTRAN 148
Cdd:COG2433 412 EEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELsearseERREIRKDREIS---RLDREIERLERELEEERERI 488
|
....*.
gi 47059017 149 ELLKSK 154
Cdd:COG2433 489 EELKRK 494
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
67-678 |
9.16e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 39.57 E-value: 9.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 67 KKAKTLVSKKESQKNDKDVKRLEKEIHVLLQERGTQDKRIQDMESELENTEANLNAPVTEKPSLSANNASLEKRLTeltR 146
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRD---E 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 147 ANELLKSKFSEDAHQKNMRTLSlelmKLRNKRETKMRSMMAKQEGMELKLQATQKDLIESKGKIVQLEGKLVSIEKEKID 226
Cdd:pfam02463 250 QEEIESSKQEIEKEEEKLAQVL----KENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKK 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 227 EKSETEKLLEYIEEISCASDQVEKYKLDIAQLEEDLKEKDREILCLKQSLEEKVSFSKQIEDLTVKCQLLEAERDDLVSK 306
Cdd:pfam02463 326 AEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 307 DRERAESLSAEMQVLTEKLLLERQEYEKLQQNELQSQSLLQQEKELSAHLQQQLCSFQEEMTSERNVFKEQLKLALDELD 386
Cdd:pfam02463 406 EAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEQ 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 387 AVQQKKEQSEKLVKQLEEETKSTAEQLRRLDDLLREKEIELEKRTAAHAQATVIAQEKYSDTAQTLRDVTAQLESYKSST 466
Cdd:pfam02463 486 LELLLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQK 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 467 LKEIE-----DLKLENLTLQEKVAMAEKRVEDVQQQILTAESTNQEYAKVVQDLQNSSTLKEAEIKEITSSYLEKITDLQ 541
Cdd:pfam02463 566 LVRALtelplGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKE 645
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 47059017 542 NQLRQQNEDFRKQLEEEGAKMTEKETAVTELTMEINKWRLLYEELFDKTKPFQQQLDAFEAEKQALLNEHGATQEQLSKI 621
Cdd:pfam02463 646 SGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLAD 725
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*..
gi 47059017 622 RDSYAQLLGHQNLKQKIKHVVKLKDENSQLKSEVSKLRSQLAKRKQNELRLQGELDK 678
Cdd:pfam02463 726 RVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK 782
|
|
| |
