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Conserved domains on  [gi|2199215486|ref|NP_062012|]
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glial cell line-derived neurotrophic factor isoform 1 precursor [Rattus norvegicus]

Protein Classification

TGF-beta family protein( domain architecture ID 14443712)

transforming growth factor-beta (TGF-beta) family protein may control proliferation, differentiation, and other functions in many cell types

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TGF_beta_GDNF cd19380
transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived ...
 144-239 2.59e-56

transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived neurotrophic factor (GDNF) and similar proteins; GDNF, also termed astrocyte-derived trophic factor (ATF), is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high-affinity dopamine uptake.


:

Pssm-ID: 381650  Cd Length: 96  Bit Score: 174.65  E-value: 2.59e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 144 NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSFLDDS 223
Cdd:cd19380     1 NRGCVLTEIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLTRNKKLVSDKVGQACCRPIAFDDDLSFLDDN 80

                          90
                  ....*....|....*.
gi 2199215486 224 LVYHILRKHSAKRCGC 239
Cdd:cd19380    81 LVYHTLKKHSAKKCGC 96
 
Name Accession Description Interval E-value
TGF_beta_GDNF cd19380
transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived ...
 144-239 2.59e-56

transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived neurotrophic factor (GDNF) and similar proteins; GDNF, also termed astrocyte-derived trophic factor (ATF), is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high-affinity dopamine uptake.


Pssm-ID: 381650  Cd Length: 96  Bit Score: 174.65  E-value: 2.59e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 144 NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSFLDDS 223
Cdd:cd19380     1 NRGCVLTEIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLTRNKKLVSDKVGQACCRPIAFDDDLSFLDDN 80

                          90
                  ....*....|....*.
gi 2199215486 224 LVYHILRKHSAKRCGC 239
Cdd:cd19380    81 LVYHTLKKHSAKKCGC 96
TGF_beta pfam00019
Transforming growth factor beta like domain;
146-239 5.51e-09

Transforming growth factor beta like domain;


Pssm-ID: 459632  Cd Length: 102  Bit Score: 52.33  E-value: 5.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 146 GCVLTAIHLNVTDLGL--------GYEtkeeliFRYCSGSC------EAAETMYDKIlknLSRSRRLTSDKVGQACCRPV 211
Cdd:pfam00019   1 ECRRHSLYVDFEDLGWddwiiapkGYN------AYYCSGSCpshlnpQLSATNHAIL---QSLLHSLKPANVPKPCCVPT 71

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2199215486 212 AFDDDL---SFLDDSLVYHILRKHSAKRCGC 239
Cdd:pfam00019  72 KLSPLSvlyYDDEGNVVLKTYPDMVVESCGC 102
 
Name Accession Description Interval E-value
TGF_beta_GDNF cd19380
transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived ...
 144-239 2.59e-56

transforming growth factor beta (TGF-beta) like domain found in glial cell line-derived neurotrophic factor (GDNF) and similar proteins; GDNF, also termed astrocyte-derived trophic factor (ATF), is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that enhances survival and morphological differentiation of dopaminergic neurons and increases their high-affinity dopamine uptake.


Pssm-ID: 381650  Cd Length: 96  Bit Score: 174.65  E-value: 2.59e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 144 NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQACCRPVAFDDDLSFLDDS 223
Cdd:cd19380     1 NRGCVLTEIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLTRNKKLVSDKVGQACCRPIAFDDDLSFLDDN 80

                          90
                  ....*....|....*.
gi 2199215486 224 LVYHILRKHSAKRCGC 239
Cdd:cd19380    81 LVYHTLKKHSAKKCGC 96
TGF_beta_GDNF_like cd13750
transforming growth factor beta (TGF-beta) like domain found in the glial cell-line-derived ...
 146-239 1.58e-41

transforming growth factor beta (TGF-beta) like domain found in the glial cell-line-derived neurotrophic factor (GDNF) family of ligands; GDNF family of ligands includes GDNF, Artemin, Neurturin, and Persephin. They plays an important role in the development and maintenance of the central and peripheral nervous system, renal morphogenesis, and spermatogenesis.


Pssm-ID: 381628  Cd Length: 95  Bit Score: 136.81  E-value: 1.58e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 146 GCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSD-KVGQACCRPVAFDDDLSFLDDSL 224
Cdd:cd13750     1 GCVLRELHLRVTDLGLGYASEEEVIFRYCAGSCEAARTNYDLILANLRGWRRLRSDrKVGQPCCRPTAYDDDVSFLDDNS 80

                          90
                  ....*....|....*
gi 2199215486 225 VYHILRKHSAKRCGC 239
Cdd:cd13750    81 RYHILRKLSAKACGC 95
TGF_beta_Neurturin cd19383
transforming growth factor beta (TGF-beta) like domain found in Neurturin and similar proteins; ...
 145-240 6.75e-24

transforming growth factor beta (TGF-beta) like domain found in Neurturin and similar proteins; Neurturin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family. It acts as a neurotrophic factor that supports the survival of sympathetic neurons in culture and may regulate the development and maintenance of the CNS. It might control the size of non-neuronal cell population such as haemopoietic cells.


Pssm-ID: 381653  Cd Length: 104  Bit Score: 92.07  E-value: 6.75e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 145 RGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDKVGQA----CCRPVAFDDDLSFL 220
Cdd:cd19383     5 KPCSLRELEVTVSELGLGYESDETVLFRYCSGKCEAARRNYDLTLKHMRGKKSLKKGRKDKVrarpCCRPTAYEDDVSFL 84

                          90       100
                  ....*....|....*....|
gi 2199215486 221 DDSLVYHILRKHSAKRCGCI 240
Cdd:cd19383    85 DNNNRYHTIQELSAKECGCV 104
TGF_beta_Artemin cd19381
transforming growth factor beta (TGF-beta) like domain found in Artemin and similar proteins; ...
 146-240 7.66e-18

transforming growth factor beta (TGF-beta) like domain found in Artemin and similar proteins; Artemin, also termed Enovin, or Neublastin, is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with growth promoting activity on neuronal cells. It acts as the ligand for the GFR-alpha-3-RET receptor complex but can also activate the GFR-alpha-1-RET receptor complex. It supports peripheral and central neurons and signals through the GFR-alpha-3-RET receptor complex.


Pssm-ID: 381651  Cd Length: 98  Bit Score: 75.85  E-value: 7.66e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 146 GCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTSDK----VGQACCRPVaFDDDLSFLD 221
Cdd:cd19381     1 GCRLRSLRVKVRDLGLGYESDEIVLFKYCSGSCQRARTNYDLTLNSLLKQGAIPPGPhervSSQPCCRPT-RYENVSFMD 79

                          90
                  ....*....|....*....
gi 2199215486 222 DSLVYHILRKHSAKRCGCI 240
Cdd:cd19381    80 VQNVWQTVEKLSAAECSCV 98
TGF_beta_Persephin cd19382
transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; ...
 145-240 1.72e-15

transforming growth factor beta (TGF-beta) like domain found in Persephin and similar proteins; Persephin is a member of the glial cell-line-derived neurotrophic factor (GDNF) family with neurotrophic activity on mesencephalic dopaminergic and motor neurons.


Pssm-ID: 381652  Cd Length: 99  Bit Score: 69.80  E-value: 1.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 145 RGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCEAAETMYDKILKNLSRSRRLTS---DKVGQACCRPVAFDDDLSFLD 221
Cdd:cd19382     1 RPCRLRSLLLRVGDLGLGYDSEETVLFKYCSGGCPRARTNHDLTLSRLLQKGDLPSlgeKIFGGPCCRPTHYEDVAFLDD 80

                          90
                  ....*....|....*....
gi 2199215486 222 DSLvYHILRKHSAKRCGCI 240
Cdd:cd19382    81 NHR-WHTVEKLSAAACACV 98
TGF_beta_SF cd08698
transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily; TGF-beta ...
 147-239 6.25e-10

transforming growth factor beta (TGF-beta) like domain found in TGF-beta superfamily; TGF-beta superfamily consists of a large group of cell regulatory proteins, such as TFG-betas, Nodal, Activins/Inhibins, glial cell-line-derived neurotrophic factor (GDNF) family of ligands, bone morphogenetic proteins (BMPs), and growth and differentiation factors (GDFs). They play important roles in developmental and physiological processes in a variety of species, including invertebrates as well as vertebrates, through specific receptor complexes that are composed of type I and type II serine/threonine receptor kinases. The receptor kinases subsequently activate Smad proteins, which then propagate the signals into the nucleus to regulate target gene expression. Proteins from the TGF-beta superfamily are only active as homo- or heterodimer.


Pssm-ID: 381627  Cd Length: 100  Bit Score: 54.79  E-value: 6.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 147 CVLTAIHLNVTDLGLGYETK--EELIFRYCSGSCEAAETMYDKILKNL--SRSRRLTSDKVGQACCRPVAFDDDL--SFL 220
Cdd:cd08698     1 CCKQPLYVNFKDLGGLNWIIapSGFTANYCRGSCNSESSATTNHTKLLqwSRTRRHTPREELKPCCVPTSYEPLSilYYD 80

                          90       100
                  ....*....|....*....|
gi 2199215486 221 DDSLVYH-ILRKHSAKRCGC 239
Cdd:cd08698    81 NNGTVVEtLLPNLIVTECGC 100
TGF_beta pfam00019
Transforming growth factor beta like domain;
146-239 5.51e-09

Transforming growth factor beta like domain;


Pssm-ID: 459632  Cd Length: 102  Bit Score: 52.33  E-value: 5.51e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2199215486 146 GCVLTAIHLNVTDLGL--------GYEtkeeliFRYCSGSC------EAAETMYDKIlknLSRSRRLTSDKVGQACCRPV 211
Cdd:pfam00019   1 ECRRHSLYVDFEDLGWddwiiapkGYN------AYYCSGSCpshlnpQLSATNHAIL---QSLLHSLKPANVPKPCCVPT 71

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2199215486 212 AFDDDL---SFLDDSLVYHILRKHSAKRCGC 239
Cdd:pfam00019  72 KLSPLSvlyYDDEGNVVLKTYPDMVVESCGC 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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