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Conserved domains on  [gi|13129104|ref|NP_077003|]
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coiled-coil domain-containing protein 86 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.11e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


:

Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.49  E-value: 1.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   236 PKGKPKSGRVWKDrSKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKA-EKKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 13129104   315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
dnaA super family cl42516
chromosomal replication initiator protein DnaA;
3-204 1.12e-05

chromosomal replication initiator protein DnaA;


The actual alignment was detected with superfamily member PRK14086:

Pssm-ID: 455861 [Multi-domain]  Cd Length: 617  Bit Score: 47.13  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    3 TPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRaglgsperpPKTSPGSPRLQQgagleSPQ 82
Cdd:PRK14086  89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL---------PTARPAYPAYQQ-----RPE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   83 GQPEPGAASPQRQQDLHLESPQRQP-----EYSPESPRCQPKPSEEAPKCSQDQGvlaSELAQNKEELTPGAPQHQLP-P 156
Cdd:PRK14086 155 PGAWPRAADDYGWQQQRLGFPPRAPyaspaSYAPEQERDREPYDAGRPEYDQRRR---DYDHPRPDWDRPRRDRTDRPeP 231

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 13129104  157 VPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSkPPPAGET 204
Cdd:PRK14086 232 PPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPA-PGPGEPT 278
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.11e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.49  E-value: 1.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   236 PKGKPKSGRVWKDrSKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKA-EKKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 13129104   315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
dnaA PRK14086
chromosomal replication initiator protein DnaA;
3-204 1.12e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.13  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    3 TPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRaglgsperpPKTSPGSPRLQQgagleSPQ 82
Cdd:PRK14086  89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL---------PTARPAYPAYQQ-----RPE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   83 GQPEPGAASPQRQQDLHLESPQRQP-----EYSPESPRCQPKPSEEAPKCSQDQGvlaSELAQNKEELTPGAPQHQLP-P 156
Cdd:PRK14086 155 PGAWPRAADDYGWQQQRLGFPPRAPyaspaSYAPEQERDREPYDAGRPEYDQRRR---DYDHPRPDWDRPRRDRTDRPeP 231

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 13129104  157 VPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSkPPPAGET 204
Cdd:PRK14086 232 PPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPA-PGPGEPT 278
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 61-183 1.82e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.18  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    61 RPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQqdlhLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGV-----LA 135
Cdd:TIGR01628 379 QPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP----LGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSrnaqnAA 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 13129104   136 SELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLELTP 183
Cdd:TIGR01628 455 QKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATP 502
 
Name Accession Description Interval E-value
Cgr1 pfam03879
Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA ...
 236-338 1.11e-13

Cgr1 family; Members of this family are coiled-coil proteins that are involved in pre-rRNA processing.


Pssm-ID: 427562 [Multi-domain]  Cd Length: 107  Bit Score: 66.49  E-value: 1.11e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   236 PKGKPKSGRVWKDrSKKRFSQMLQDKPLRT-SWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENER 314
Cdd:pfam03879   1 PKGMRVSGKPWKA-EKKAFRRSSLVVGPKSkSWEKRQEKRLELKAIKAKEKELKDEKEAERQRRIQAIKERREAKEEKER 79

                          90       100
                  ....*....|....*....|....
gi 13129104   315 KAEVVQVIrNPAKLKRAKKKQLRS 338
Cdd:pfam03879  80 YEELAAKM-HAKKVERLKRKEKRN 102
dnaA PRK14086
chromosomal replication initiator protein DnaA;
3-204 1.12e-05

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 47.13  E-value: 1.12e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    3 TPLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRaglgsperpPKTSPGSPRLQQgagleSPQ 82
Cdd:PRK14086  89 DPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQL---------PTARPAYPAYQQ-----RPE 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   83 GQPEPGAASPQRQQDLHLESPQRQP-----EYSPESPRCQPKPSEEAPKCSQDQGvlaSELAQNKEELTPGAPQHQLP-P 156
Cdd:PRK14086 155 PGAWPRAADDYGWQQQRLGFPPRAPyaspaSYAPEQERDREPYDAGRPEYDQRRR---DYDHPRPDWDRPRRDRTDRPeP 231

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 13129104  157 VPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSkPPPAGET 204
Cdd:PRK14086 232 PPGAGHVHRGGPGPPERDDAPVVPIRPSAPGPLAAQPAPA-PGPGEPT 278
PHA03247 PHA03247
large tegument protein UL36; Provisional
 39-223 2.07e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 46.86  E-value: 2.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    39 PEETREPGSPPSVQRAGLGSPERP-------PKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQQ--------------- 96
Cdd:PHA03247 2781 RRLTRPAVASLSESRESLPSPWDPadppaavLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPpppslplggsvapgg 2860

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    97 DLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPgqQAPGPEPSQ 176
Cdd:PHA03247 2861 DVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQP--QPPPPPPPR 2938

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*..
gi 13129104   177 PLLELTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPA 223
Cdd:PHA03247 2939 PQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985
PHA03247 PHA03247
large tegument protein UL36; Provisional
 16-199 7.29e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.93  E-value: 7.29e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    16 PESPESLTSVSRTRRALVEFESNPEETREPgsPPSVQRAGLGSPERPPKTS--------PGSPRLQQGaglesPQGQPEP 87
Cdd:PHA03247 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPP--PTSAQPTAPPPPPGPPPPSlplggsvaPGGDVRRRP-----PSRSPAA 2873

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    88 GAASPQRQQDLHLESP--QRQPEYSPESP-RCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGspePY 164
Cdd:PHA03247 2874 KPAAPARPPVRRLARPavSRSTESFALPPdQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD---PA 2950

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 13129104   165 PGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSKPP 199
Cdd:PHA03247 2951 GAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPS 2985
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 34-200 1.59e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.52  E-value: 1.59e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   34 EFESNPEETREPGSPPSVQRAGlgSPERPpkTSPGSPRLQQGAGLESPQGQPEPgAASPQRQQDLHLESPQRQPEySPES 113
Cdd:PTZ00449 580 EFPKDPKHPKDPEEPKKPKRPR--SAQRP--TRPKSPKLPELLDIPKSPKRPES-PKSPKRPPPPQRPSSPERPE-GPKI 653

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104  114 PRCQPKPseEAPKCSQDQGV-------LASELAQNKEELTPGAPQHQLPPVPGSPEP-YPGQQAPGPEPSQPLLELTPRA 185
Cdd:PTZ00449 654 IKSPKPP--KSPKPPFDPKFkekfyddYLDAAAKSKETKTTVVLDESFESILKETLPeTPGTPFTTPRPLPPKLPRDEEF 731

                        170
                 ....*....|....*
gi 13129104  186 PGSPRGqhEPSKPPP 200
Cdd:PTZ00449 732 PFEPIG--DPDAEQP 744
PHA03247 PHA03247
large tegument protein UL36; Provisional
 26-227 3.32e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 43.00  E-value: 3.32e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    26 SRTRRALVEFESNpeETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQGQPEPgAASPQRQQDLHLESPQR 105
Cdd:PHA03247 2584 SRARRPDAPPQSA--RPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGR 2660

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   106 --------------QPEYSPESPRCQPKPSEEAPKCSqdqgvLASELAQNKE---ELTPGAPQHQLPPVP----GSPEPY 164
Cdd:PHA03247 2661 vsrprrarrlgraaQASSPPQRPRRRAARPTVGSLTS-----LADPPPPPPTpepAPHALVSATPLPPGPaaarQASPAL 2735

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13129104   165 PGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKL 227
Cdd:PHA03247 2736 PAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESL 2798
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 52-191 4.35e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 42.28  E-value: 4.35e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   52 QRAGLGSPERPPKTSPGSPRlQQGAGLESPQGQPEPGAASPQRQQdlhlesPQRQPEYSPESPRcQPKPSEEAPKCSQDQ 131
Cdd:PRK07764 383 RRLGVAGGAGAPAAAAPSAA-AAAPAAAPAPAAAAPAAAAAPAPA------AAPQPAPAPAPAP-APPSPAGNAPAGGAP 454

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104  132 GVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLELTPRAPGSPRG 191
Cdd:PRK07764 455 SPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDAATLRE 514
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 39-205 5.90e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 41.90  E-value: 5.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   39 PEETREPGSPPSVQRAGLGSPERPPKtSPGSPRLQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQP 118
Cdd:PRK07764 630 AGAAAAPAEASAAPAPGVAAPEHHPK-HVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104  119 KPSEeapkcsQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPgqqAPGPEPSQPLLELTPRAPGSPRGQHEPSKP 198
Cdd:PRK07764 709 PPAG------QADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP---DPAGAPAQPPPPPAPAPAAAPAAAPPPSPP 779


                 ....*..
gi 13129104  199 PPAGETV 205
Cdd:PRK07764 780 SEEEEMA 786
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 78-206 1.68e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 40.45  E-value: 1.68e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    78 LESPQGQPEpgaASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQ--HQLP 155
Cdd:PRK10263  744 LFTPIVEPV---QQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQpqYQQP 820

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 13129104   156 PVPGSPEP--YPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSKPPPAGETVT 206
Cdd:PRK10263  821 QQPVAPQPqyQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLT 873
PABP-1234 TIGR01628
polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins ...
 61-183 1.82e-03

polyadenylate binding protein, human types 1, 2, 3, 4 family; These eukaryotic proteins recognize the poly-A of mRNA and consists of four tandem RNA recognition domains at the N-terminus (rrm: pfam00076) followed by a PABP-specific domain (pfam00658) at the C-terminus. The protein is involved in the transport of mRNA's from the nucleus to the cytoplasm. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed and of unknown tissue range.


Pssm-ID: 130689 [Multi-domain]  Cd Length: 562  Bit Score: 40.18  E-value: 1.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    61 RPPKTSPGSPRLQQGAGLESPQGQPEPGAASPQRQqdlhLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGV-----LA 135
Cdd:TIGR01628 379 QPRMRQLPMGSPMGGAMGQPPYYGQGPQQQFNGQP----LGWPRMSMMPTPMGPGGPLRPNGLAPMNAVRAPSrnaqnAA 454

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 13129104   136 SELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLELTP 183
Cdd:TIGR01628 455 QKPPMQPVMYPPNYQSLPLSQDLPQPQSTASQGGQNKKLAQVLASATP 502
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 4-226 2.65e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 39.77  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104     4 PLRRSRRLGGLRPESPESLTSVSRTRRALVEFESNPEETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQG 83
Cdd:PHA03307  144 PGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPA 223

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    84 QPEPGAASPQRQQDLHLESPQRQPEYSPESPRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEP 163
Cdd:PHA03307  224 PGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSP 303

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 13129104   164 YPGQQAPGPEPSQPLLELTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKK 226
Cdd:PHA03307  304 GSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPR 366
PHA03247 PHA03247
large tegument protein UL36; Provisional
 32-201 2.74e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.92  E-value: 2.74e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    32 LVEFESNPEETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQG-AGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYS 110
Cdd:PHA03247 2695 LTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAApAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAA 2774

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   111 PES--PRCQPKPSEEAPKCSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYP--GQQAPGPEPSQPLLELTPR-- 184
Cdd:PHA03247 2775 PAAgpPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPtsAQPTAPPPPPGPPPPSLPLgg 2854

                         170
                  ....*....|....*....
gi 13129104   185 --APGSPRGQHEPSKPPPA 201
Cdd:PHA03247 2855 svAPGGDVRRRPPSRSPAA 2873
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 43-187 3.25e-03

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 39.31  E-value: 3.25e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   43 REPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESPQgQPEPGAASPQRQQdlhleSPQRQPEYSPESPRCQPKPSE 122
Cdd:PRK14951 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPA-AAPAAAASAPAAP-----PAAAPPAPVAAPAAAAPAAAP 438

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 13129104  123 EAPkcsqdqgvlASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPLLELTPRAPG 187
Cdd:PRK14951 439 AAA---------PAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTEEG 494
PHA03247 PHA03247
large tegument protein UL36; Provisional
 41-270 8.29e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 8.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    41 ETREPGSPPSVQRAGLGSPERPPKTSPGSPRLQQGAGLESP----------------QGQPEPGAASPQRQQDLHLES-- 102
Cdd:PHA03247 2413 EQPDPPGPPDVRFVGSEEIEELPFVSPGGDVLAGLAADGDPffartilgapfslsllLGELFPGAPVYRRPAEARFPFaa 2492

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   103 -PQRQPEYS-PESPRCQPKPSEEAPKCSQDQGV-----------------LASELAQN-----KEELTPGAPQHQLPPVP 158
Cdd:PHA03247 2493 gAAPDPGGGgPPDPDAPPAPSRLAPAILPDEPVgepvhprmltwirgleeLASDDAGDpppplPPAAPPAAPDRSVPPPR 2572

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   159 GSPEPY-PGQQAPGPEPSQPLLELTPRAPG----SPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKeelP 233
Cdd:PHA03247 2573 PAPRPSePAVTSRARRPDAPPQSARPRAPVddrgDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPP---P 2649

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 13129104   234 VIPKGKPKSGRVWKDRSKKRFSQMLQDKPLRTSWQRK 270
Cdd:PHA03247 2650 ERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRR 2686
PHA03247 PHA03247
large tegument protein UL36; Provisional
 29-245 9.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 38.38  E-value: 9.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104    29 RRALVEFESNPEETREPGSPPSVQRAGLGSPERP-----PKTSPGSP----RLQQGAGLESPQGQPEPGAASPqrqqdLH 99
Cdd:PHA03247 2482 RPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLapailPDEPVGEPvhprMLTWIRGLEELASDDAGDPPPP-----LP 2556

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 13129104   100 LESPQRQPEYSPESPRCQPKPSEEApkcSQDQGVLASELAQNKEELTPGAPQHQLPPVPGSPEPYPGQQAPGPEPSQPll 179
Cdd:PHA03247 2557 PAAPPAAPDRSVPPPRPAPRPSEPA---VTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP-- 2631

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 13129104   180 elTPRAPGSPRGQHEPSKPPPAGETVTGGFGAKKRKGSSSQAPASKKLNKEELPVIPKGKPKSGRV 245
Cdd:PHA03247 2632 --SPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSL 2695
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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