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Conserved domains on  [gi|30794464|ref|NP_080121|]
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pre-mRNA-splicing factor 38B isoform 1 [Mus musculus]

Protein Classification

pre-mRNA-splicing factor 38( domain architecture ID 10505891)

pre-mRNA-splicing factor 38 is involved in pre-mRNA splicing as a component of the spliceosome

Gene Ontology:  GO:0003723|GO:0000398

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRP38 pfam03371
PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from ...
 48-228 1.44e-75

PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation.


:

Pssm-ID: 460901  Cd Length: 165  Bit Score: 236.18  E-value: 1.44e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464    48 LPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTyHEVVDEIYFKVTHVEPWEKGSRKTAgqtgmcggvrgvgtggivS 127
Cdd:pfam03371   1 KQINGNNPTLLIEKILRTRILDSLYWKENLFGLNA-AELVDEIVEDVKYIGGWTYGGNRKP------------------S 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   128 TAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDV--KAGGGCVMTIGEML 205
Cdd:pfam03371  62 PFLCLLLKLLQLQPTKEQILEYLNNEDFKYLRALGALYLRLTYPPKDVYKWLEPYLNDYRKLRIrlLDGDYKLTHMDEFV 141

                         170       180
                  ....*....|....*....|...
gi 30794464   206 RSFLTKLEWFSTLFPRIPVPVQK 228
Cdd:pfam03371 142 DDLLTKDRVCGTILPRLPKRIVL 164
U2AF_lg super family cl36941
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 411-542 5.14e-06

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


The actual alignment was detected with superfamily member TIGR01642:

Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 49.12  E-value: 5.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   411 RRHRDDKKESKKKHSRSRSRERKH-RSRSRNAGKRSRSRSKDKSSRHKNESKEkankRSRSGSQGRTGSVEKrkrehspS 489
Cdd:TIGR01642   6 DREREKSRGRDRDRSSERPRRRSRdRSRFRDRHRRSRERSYREDSRPRDRRRY----DSRSPRSLRYSSVRR-------S 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 30794464   490 REKSRKRSRSQDRSHKREHNdSKDQSDRqdHQSSQSGEPESQEKEHKSKDETV 542
Cdd:TIGR01642  75 RDRPRRRSRSVRSIEQHRRR-LRDRSPS--NQWRKDDKKRSLWDIKPPGYELV 124
 
Name Accession Description Interval E-value
PRP38 pfam03371
PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from ...
 48-228 1.44e-75

PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation.


Pssm-ID: 460901  Cd Length: 165  Bit Score: 236.18  E-value: 1.44e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464    48 LPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTyHEVVDEIYFKVTHVEPWEKGSRKTAgqtgmcggvrgvgtggivS 127
Cdd:pfam03371   1 KQINGNNPTLLIEKILRTRILDSLYWKENLFGLNA-AELVDEIVEDVKYIGGWTYGGNRKP------------------S 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   128 TAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDV--KAGGGCVMTIGEML 205
Cdd:pfam03371  62 PFLCLLLKLLQLQPTKEQILEYLNNEDFKYLRALGALYLRLTYPPKDVYKWLEPYLNDYRKLRIrlLDGDYKLTHMDEFV 141

                         170       180
                  ....*....|....*....|...
gi 30794464   206 RSFLTKLEWFSTLFPRIPVPVQK 228
Cdd:pfam03371 142 DDLLTKDRVCGTILPRLPKRIVL 164
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 411-542 5.14e-06

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 49.12  E-value: 5.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   411 RRHRDDKKESKKKHSRSRSRERKH-RSRSRNAGKRSRSRSKDKSSRHKNESKEkankRSRSGSQGRTGSVEKrkrehspS 489
Cdd:TIGR01642   6 DREREKSRGRDRDRSSERPRRRSRdRSRFRDRHRRSRERSYREDSRPRDRRRY----DSRSPRSLRYSSVRR-------S 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 30794464   490 REKSRKRSRSQDRSHKREHNdSKDQSDRqdHQSSQSGEPESQEKEHKSKDETV 542
Cdd:TIGR01642  75 RDRPRRRSRSVRSIEQHRRR-LRDRSPS--NQWRKDDKKRSLWDIKPPGYELV 124
DMP1 pfam07263
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ...
 394-542 4.06e-03

Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.


Pssm-ID: 462128 [Multi-domain]  Cd Length: 519  Bit Score: 39.91  E-value: 4.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   394 RSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRSKDKSSRHKNESKEKANKRSR---- 469
Cdd:pfam07263 196 GSEGDSSHGDGSEFDDEGMQSDDPDSIRSERGNSRMSSASVKSKESKGDSEQASTQDSGDSQSVEYPSRKFFRKSRisee 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   470 --SGSQGRTGSVEKRK---------REHSPSREKSRKRSRSQ-DRSHKREHNDSKDQSDRQDhQSSQSGEPESQEKEHKS 537
Cdd:pfam07263 276 ddRGELDDSNTMEEVKsdstestssKEAGLSQSREDSKSESQeDSEESQSQEDSQNSQDPSS-ESSQEADLPSQESSSES 354


                  ....*
gi 30794464   538 KDETV 542
Cdd:pfam07263 355 QEEVV 359
PLN02967 PLN02967
kinase
 417-540 9.28e-03

kinase


Pssm-ID: 215521 [Multi-domain]  Cd Length: 581  Bit Score: 38.87  E-value: 9.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464  417 KKESKKKHSRSRSRERKhRSRSRNAGKRSRSRSKDKSSRHKNESKEKANK-RSRSGSQGRTGSVEKRKREhspsREKSRK 495
Cdd:PLN02967  66 GAVSKKKPTRSVKRATK-KTVVEISEPLEEGSELVVNEDAALDKESKKTPrRTRRKAAAASSDVEEEKTE----KKVRKR 140

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 30794464  496 RSRSQDRSHKREHNDSKDQSDRQDHQSSQSGEPESQEKEHKSKDE 540
Cdd:PLN02967 141 RKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDD 185
 
Name Accession Description Interval E-value
PRP38 pfam03371
PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from ...
 48-228 1.44e-75

PRP38 family; Members of this family are related to the pre mRNA splicing factor PRP38 from yeast. Therefore all the members of this family could be involved in splicing. This conserved region could be involved in RNA binding. The putative domain is about 180 amino acids in length. PRP38 is a unique component of the U4/U6.U5 tri-small nuclear ribonucleoprotein (snRNP) particle and is necessary for an essential step late in spliceosome maturation.


Pssm-ID: 460901  Cd Length: 165  Bit Score: 236.18  E-value: 1.44e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464    48 LPLWGNEKTMNLNPMILTNILSSPYFKVQLYELKTyHEVVDEIYFKVTHVEPWEKGSRKTAgqtgmcggvrgvgtggivS 127
Cdd:pfam03371   1 KQINGNNPTLLIEKILRTRILDSLYWKENLFGLNA-AELVDEIVEDVKYIGGWTYGGNRKP------------------S 61

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   128 TAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDWFESFLDDEEDLDV--KAGGGCVMTIGEML 205
Cdd:pfam03371  62 PFLCLLLKLLQLQPTKEQILEYLNNEDFKYLRALGALYLRLTYPPKDVYKWLEPYLNDYRKLRIrlLDGDYKLTHMDEFV 141

                         170       180
                  ....*....|....*....|...
gi 30794464   206 RSFLTKLEWFSTLFPRIPVPVQK 228
Cdd:pfam03371 142 DDLLTKDRVCGTILPRLPKRIVL 164
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 411-542 5.14e-06

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 49.12  E-value: 5.14e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   411 RRHRDDKKESKKKHSRSRSRERKH-RSRSRNAGKRSRSRSKDKSSRHKNESKEkankRSRSGSQGRTGSVEKrkrehspS 489
Cdd:TIGR01642   6 DREREKSRGRDRDRSSERPRRRSRdRSRFRDRHRRSRERSYREDSRPRDRRRY----DSRSPRSLRYSSVRR-------S 74

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 30794464   490 REKSRKRSRSQDRSHKREHNdSKDQSDRqdHQSSQSGEPESQEKEHKSKDETV 542
Cdd:TIGR01642  75 RDRPRRRSRSVRSIEQHRRR-LRDRSPS--NQWRKDDKKRSLWDIKPPGYELV 124
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 411-516 1.53e-04

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 44.52  E-value: 1.53e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   411 RRHRDDKKESKKKHSRSRSRERKhRSRSRNagkrsrsrskdkssRHKNESKEKANKRSRSGSQGRTG-SVEKRKREHSPS 489
Cdd:TIGR01622   8 ERLRDSSSAGDRDRRRDKGRERS-RDRSRD--------------RERSRSRRRDRHRDRDYYRGRERrSRSRRPNRRYRP 72

                          90       100       110
                  ....*....|....*....|....*....|..
gi 30794464   490 REKSRKRS-----RSQDRSHKREHNDSKDQSD 516
Cdd:TIGR01622  73 REKRRRRGdsyrrRRDDRRSRREKPRARDGTP 104
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 426-542 4.44e-04

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 42.98  E-value: 4.44e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   426 RSRSRERKhRSRSRNAGKRSRSRSKDKSSRHKNESKEKANKRSRSGSQGRTGSV----EKRKREHSPsREKSRKRSRSQD 501
Cdd:TIGR01622   1 RYRDRERE-RLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDRHRDRDYyrgrERRSRSRRP-NRRYRPREKRRR 78

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 30794464   502 RSHKREHNDsKDQSDRQDHQSSQSGEPESQEkEHKSKDETV 542
Cdd:TIGR01622  79 RGDSYRRRR-DDRRSRREKPRARDGTPEPLT-EDERDRRTV 117
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 407-500 7.76e-04

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 42.19  E-value: 7.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   407 DKEDR-RHRDDKKESKKKHSRSRSRERKHR---------SRSRNAGKRSRSRSKDKSSRHKNESKEKANKRSRSGSQGRT 476
Cdd:TIGR01642  11 KSRGRdRDRSSERPRRRSRDRSRFRDRHRRsrersyredSRPRDRRRYDSRSPRSLRYSSVRRSRDRPRRRSRSVRSIEQ 90

                          90       100
                  ....*....|....*....|....*
gi 30794464   477 GsvEKRKREHSPSREKSR-KRSRSQ 500
Cdd:TIGR01642  91 H--RRRLRDRSPSNQWRKdDKKRSL 113
SF-CC1 TIGR01622
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ...
 394-501 1.29e-03

splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed.


Pssm-ID: 273721 [Multi-domain]  Cd Length: 494  Bit Score: 41.44  E-value: 1.29e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   394 RSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERkHRSRSRNAGKRSRSRskdkssrhknESKEKANKRSRSGSQ 473
Cdd:TIGR01622   9 RLRDSSSAGDRDRRRDKGRERSRDRSRDRERSRSRRRDR-HRDRDYYRGRERRSR----------SRRPNRRYRPREKRR 77

                          90       100
                  ....*....|....*....|....*...
gi 30794464   474 GRTGSVEKRKREHSPSREKSRKRSRSQD 501
Cdd:TIGR01622  78 RRGDSYRRRRDDRRSRREKPRARDGTPE 105
DMP1 pfam07263
Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix ...
 394-542 4.06e-03

Dentin matrix protein 1 (DMP1); This family consists of several mammalian dentin matrix protein 1 (DMP1) sequences. The dentin matrix acidic phosphoprotein 1 (DMP1) gene has been mapped to human chromosome 4q21. DMP1 is a bone and teeth specific protein initially identified from mineralized dentin. DMP1 is primarily localized in the nuclear compartment of undifferentiated osteoblasts. In the nucleus, DMP1 acts as a transcriptional component for activation of osteoblast-specific genes like osteocalcin. During the early phase of osteoblast maturation, Ca(2+) surges into the nucleus from the cytoplasm, triggering the phosphorylation of DMP1 by a nuclear isoform of casein kinase II. This phosphorylated DMP1 is then exported out into the extracellular matrix, where it regulates nucleation of hydroxyapatite. DMP1 is a unique molecule that initiates osteoblast differentiation by transcription in the nucleus and orchestrates mineralized matrix formation extracellularly, at later stages of osteoblast maturation. The DMP1 gene has been found to be ectopically expressed in lung cancer although the reason for this is unknown.


Pssm-ID: 462128 [Multi-domain]  Cd Length: 519  Bit Score: 39.91  E-value: 4.06e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   394 RSRGDGEEKKHKEDKEDRRHRDDKKESKKKHSRSRSRERKHRSRSRNAGKRSRSRSKDKSSRHKNESKEKANKRSR---- 469
Cdd:pfam07263 196 GSEGDSSHGDGSEFDDEGMQSDDPDSIRSERGNSRMSSASVKSKESKGDSEQASTQDSGDSQSVEYPSRKFFRKSRisee 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   470 --SGSQGRTGSVEKRK---------REHSPSREKSRKRSRSQ-DRSHKREHNDSKDQSDRQDhQSSQSGEPESQEKEHKS 537
Cdd:pfam07263 276 ddRGELDDSNTMEEVKsdstestssKEAGLSQSREDSKSESQeDSEESQSQEDSQNSQDPSS-ESSQEADLPSQESSSES 354


                  ....*
gi 30794464   538 KDETV 542
Cdd:pfam07263 355 QEEVV 359
U2AF_lg TIGR01642
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ...
 457-539 8.02e-03

U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi.


Pssm-ID: 273727 [Multi-domain]  Cd Length: 509  Bit Score: 38.72  E-value: 8.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464   457 KNESKEKANKRSRSGSQGRTGSvekRKREHSPSREKSRKRsRSQDRSHKRehnDSKDQSDRQDHQSSQSGEPESQEKEHK 536
Cdd:TIGR01642   3 EEPDREREKSRGRDRDRSSERP---RRRSRDRSRFRDRHR-RSRERSYRE---DSRPRDRRRYDSRSPRSLRYSSVRRSR 75


                  ...
gi 30794464   537 SKD 539
Cdd:TIGR01642  76 DRP 78
PLN02967 PLN02967
kinase
 417-540 9.28e-03

kinase


Pssm-ID: 215521 [Multi-domain]  Cd Length: 581  Bit Score: 38.87  E-value: 9.28e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30794464  417 KKESKKKHSRSRSRERKhRSRSRNAGKRSRSRSKDKSSRHKNESKEKANK-RSRSGSQGRTGSVEKRKREhspsREKSRK 495
Cdd:PLN02967  66 GAVSKKKPTRSVKRATK-KTVVEISEPLEEGSELVVNEDAALDKESKKTPrRTRRKAAAASSDVEEEKTE----KKVRKR 140

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 30794464  496 RSRSQDRSHKREHNDSKDQSDRQDHQSSQSGEPESQEKEHKSKDE 540
Cdd:PLN02967 141 RKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDD 185
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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