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Conserved domains on  [gi|56961629|ref|NP_082009|]
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spermatogenesis-associated protein 24 isoform 1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
SPATA24 super family cl25517
Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA ...
 22-128 1.48e-47

Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA box binding protein), TATA-binding protein (TBP)-related protein 2 (TRF2) and several polycomb factors. It is likely to function as a transcription regulator.


The actual alignment was detected with superfamily member pfam15175:

Pssm-ID: 464544 [Multi-domain]  Cd Length: 170  Bit Score: 153.08  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961629    22 LRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEVLSKQLEKEKMA 101
Cdd:pfam15175   1 MKDLFHVQQNTLEQLRQTARRQKENFVSKEEYEAVAKKLEEERAEHAKTKLLLAKESEKLQFALGEIEVLSKQLEREKKA 80

                          90       100
                  ....*....|....*....|....*..
gi 56961629   102 FEKALSSVKSRVLQESSKKDQLITKCN 128
Cdd:pfam15175  81 FEKALGSVKSKALRESKKADQLKTKCS 107
 
Name Accession Description Interval E-value
SPATA24 pfam15175
Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA ...
 22-128 1.48e-47

Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA box binding protein), TATA-binding protein (TBP)-related protein 2 (TRF2) and several polycomb factors. It is likely to function as a transcription regulator.


Pssm-ID: 464544 [Multi-domain]  Cd Length: 170  Bit Score: 153.08  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961629    22 LRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEVLSKQLEKEKMA 101
Cdd:pfam15175   1 MKDLFHVQQNTLEQLRQTARRQKENFVSKEEYEAVAKKLEEERAEHAKTKLLLAKESEKLQFALGEIEVLSKQLEREKKA 80

                          90       100
                  ....*....|....*....|....*..
gi 56961629   102 FEKALSSVKSRVLQESSKKDQLITKCN 128
Cdd:pfam15175  81 FEKALGSVKSKALRESKKADQLKTKCS 107
 
Name Accession Description Interval E-value
SPATA24 pfam15175
Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA ...
 22-128 1.48e-47

Spermatogenesis-associated protein 24; This family of proteins bind to DNA and to TBP (TATA box binding protein), TATA-binding protein (TBP)-related protein 2 (TRF2) and several polycomb factors. It is likely to function as a transcription regulator.


Pssm-ID: 464544 [Multi-domain]  Cd Length: 170  Bit Score: 153.08  E-value: 1.48e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56961629    22 LRDVIESQEELIHQLRNVMVLQDENFVSKEEFHEIEKKLVEEKAAHAKTKALLAKEEEKLQFALGEVEVLSKQLEKEKMA 101
Cdd:pfam15175   1 MKDLFHVQQNTLEQLRQTARRQKENFVSKEEYEAVAKKLEEERAEHAKTKLLLAKESEKLQFALGEIEVLSKQLEREKKA 80

                          90       100
                  ....*....|....*....|....*..
gi 56961629   102 FEKALSSVKSRVLQESSKKDQLITKCN 128
Cdd:pfam15175  81 FEKALGSVKSKALRESKKADQLKTKCS 107
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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