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Conserved domains on  [gi|58037465|ref|NP_084027|]
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large ribosomal subunit protein eL20 [Mus musculus]

Protein Classification

ribosomal L18ae family protein( domain architecture ID 10005470)

ribosomal L18ae family protein such as 50S ribosomal protein L18Ae and 60S ribosomal proteins L20 and L18A

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RPL20A COG2157
Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];
69-153 1.04e-21

Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];


:

Pssm-ID: 225068  Cd Length: 85  Bit Score: 83.58  E-value: 1.04e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58037465  69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDS 148
Cdd:COG2157   1 EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTE 80

                ....*
gi 58037465 149 KIKFP 153
Cdd:COG2157  81 DLKFP 85
 
Name Accession Description Interval E-value
RPL20A COG2157
Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];
69-153 1.04e-21

Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];


Pssm-ID: 225068  Cd Length: 85  Bit Score: 83.58  E-value: 1.04e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58037465  69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDS 148
Cdd:COG2157   1 EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTE 80

                ....*
gi 58037465 149 KIKFP 153
Cdd:COG2157  81 DLKFP 85
Ribosomal_L18A pfam01775
Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal ...
83-130 2.90e-20

Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.


Pssm-ID: 396369  Cd Length: 60  Bit Score: 79.15  E-value: 2.90e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 58037465    83 RYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Cdd:pfam01775  13 GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEVE 60
 
Name Accession Description Interval E-value
RPL20A COG2157
Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];
69-153 1.04e-21

Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis];


Pssm-ID: 225068  Cd Length: 85  Bit Score: 83.58  E-value: 1.04e-21
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 58037465  69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVEEIAAGKCRRPAVKQFHDS 148
Cdd:COG2157   1 EPMPKIFRVKGIWIFYDSRSGWHKFTKEVRALKEEDAIEKVYSDFGSRHKVKRSSIKIEEVEEIEPEDVEDPVVKRLLTE 80

                ....*
gi 58037465 149 KIKFP 153
Cdd:COG2157  81 DLKFP 85
Ribosomal_L18A pfam01775
Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal ...
83-130 2.90e-20

Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A; This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.


Pssm-ID: 396369  Cd Length: 60  Bit Score: 79.15  E-value: 2.90e-20
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 58037465    83 RYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMKVE 130
Cdd:pfam01775  13 GEKSRSGTHNFTKEYRALNEEGAVEKVYSEMGSRHRAKRSQIQIEEVE 60
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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