nuclear speckle splicing regulatory protein 1 isoform 1 [Homo sapiens]
nuclear speckle splicing regulatory protein 1 family protein( domain architecture ID 10560920)
nuclear speckle splicing regulatory protein 1 (NSRP1) family protein is a DUF2040 domain-containing protein similar to Schizosaccharomyces pombe NSRP1 homolog, also called coiled-coil domain-containing protein 55 homolog
List of domain hits
Name | Accession | Description | Interval | E-value | ||||
NRP1_C | pfam20427 | Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the ... |
293-470 | 2.53e-49 | ||||
Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the C-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55). This is the RS-like domain, that resembles the arginine/serine-rich (RS) domain in other SR proteins, interacts with two SR proteins and with target mRNA, being essential for NRP1 activity. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. : Pssm-ID: 466576 [Multi-domain] Cd Length: 174 Bit Score: 168.48 E-value: 2.53e-49
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NSRP1_N | pfam09745 | Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the ... |
58-177 | 1.59e-31 | ||||
Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the N-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55) and contains a coiled-coil domain that plays a critical role in NRP1 alternative splicing activity and self-oligomerization. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. : Pssm-ID: 462876 [Multi-domain] Cd Length: 121 Bit Score: 118.01 E-value: 1.59e-31
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Name | Accession | Description | Interval | E-value | ||||
NRP1_C | pfam20427 | Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the ... |
293-470 | 2.53e-49 | ||||
Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the C-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55). This is the RS-like domain, that resembles the arginine/serine-rich (RS) domain in other SR proteins, interacts with two SR proteins and with target mRNA, being essential for NRP1 activity. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Pssm-ID: 466576 [Multi-domain] Cd Length: 174 Bit Score: 168.48 E-value: 2.53e-49
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NSRP1_N | pfam09745 | Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the ... |
58-177 | 1.59e-31 | ||||
Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the N-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55) and contains a coiled-coil domain that plays a critical role in NRP1 alternative splicing activity and self-oligomerization. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Pssm-ID: 462876 [Multi-domain] Cd Length: 121 Bit Score: 118.01 E-value: 1.59e-31
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PRK12678 | PRK12678 | transcription termination factor Rho; Provisional |
290-452 | 2.12e-06 | ||||
transcription termination factor Rho; Provisional Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 50.67 E-value: 2.12e-06
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SF-CC1 | TIGR01622 | splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
310-401 | 4.35e-04 | ||||
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 42.98 E-value: 4.35e-04
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Name | Accession | Description | Interval | E-value | ||||
NRP1_C | pfam20427 | Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the ... |
293-470 | 2.53e-49 | ||||
Nuclear speckle splicing regulatory protein 1, RS-like domain; This domain found at the C-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55). This is the RS-like domain, that resembles the arginine/serine-rich (RS) domain in other SR proteins, interacts with two SR proteins and with target mRNA, being essential for NRP1 activity. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Pssm-ID: 466576 [Multi-domain] Cd Length: 174 Bit Score: 168.48 E-value: 2.53e-49
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NSRP1_N | pfam09745 | Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the ... |
58-177 | 1.59e-31 | ||||
Nuclear speckle splicing regulatory protein 1, N-terminal; This domain is found at the N-terminal of Nuclear speckle splicing regulatory protein 1 (NRP1, also known as Nuclear speckle-related protein 70 and Coiled-coil domain-containing protein 55) and contains a coiled-coil domain that plays a critical role in NRP1 alternative splicing activity and self-oligomerization. NRP1 is a RNA-binding protein that mediates pre-mRNA alternative splicing regulation. Pssm-ID: 462876 [Multi-domain] Cd Length: 121 Bit Score: 118.01 E-value: 1.59e-31
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PRK12678 | PRK12678 | transcription termination factor Rho; Provisional |
290-452 | 2.12e-06 | ||||
transcription termination factor Rho; Provisional Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 50.67 E-value: 2.12e-06
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SF-CC1 | TIGR01622 | splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
310-401 | 4.35e-04 | ||||
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 42.98 E-value: 4.35e-04
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PRK12678 | PRK12678 | transcription termination factor Rho; Provisional |
246-404 | 6.85e-04 | ||||
transcription termination factor Rho; Provisional Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 42.58 E-value: 6.85e-04
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PRK12678 | PRK12678 | transcription termination factor Rho; Provisional |
289-485 | 1.55e-03 | ||||
transcription termination factor Rho; Provisional Pssm-ID: 237171 [Multi-domain] Cd Length: 672 Bit Score: 41.43 E-value: 1.55e-03
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SF-CC1 | TIGR01622 | splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
338-451 | 3.07e-03 | ||||
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 40.29 E-value: 3.07e-03
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U2AF_lg | TIGR01642 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
277-386 | 4.71e-03 | ||||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.88 E-value: 4.71e-03
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U2AF_lg | TIGR01642 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
334-440 | 6.54e-03 | ||||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.11 E-value: 6.54e-03
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U2AF_lg | TIGR01642 | U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of ... |
356-465 | 7.01e-03 | ||||
U2 snRNP auxilliary factor, large subunit, splicing factor; These splicing factors consist of an N-terminal arginine-rich low complexity domain followed by three tandem RNA recognition motifs (pfam00076). The well-characterized members of this family are auxilliary components of the U2 small nuclear ribonuclearprotein splicing factor (U2AF). These proteins are closely related to the CC1-like subfamily of splicing factors (TIGR01622). Members of this subfamily are found in plants, metazoa and fungi. Pssm-ID: 273727 [Multi-domain] Cd Length: 509 Bit Score: 39.11 E-value: 7.01e-03
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SF-CC1 | TIGR01622 | splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors ... |
352-483 | 7.42e-03 | ||||
splicing factor, CC1-like family; This model represents a subfamily of RNA splicing factors including the Pad-1 protein (N. crassa), CAPER (M. musculus) and CC1.3 (H.sapiens). These proteins are characterized by an N-terminal arginine-rich, low complexity domain followed by three (or in the case of 4 H. sapiens paralogs, two) RNA recognition domains (rrm: pfam00706). These splicing factors are closely related to the U2AF splicing factor family (TIGR01642). A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the seed. Pssm-ID: 273721 [Multi-domain] Cd Length: 494 Bit Score: 39.13 E-value: 7.42e-03
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Blast search parameters | ||||
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