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Conserved domains on  [gi|21717761|ref|NP_598987|]
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vomeronasal 1 receptor 89 [Mus musculus]

Protein Classification

G protein-coupled receptor family protein( domain architecture ID 705710)

G protein-coupled receptor family protein is a seven-transmembrane G protein-coupled receptor (7TM-GPCR) family protein which typically transmits an extracellular signal into the cell by the conformational rearrangement of the 7TM helices and by the subsequent binding and activation of an intracellular heterotrimeric G protein; GPCR ligands include light-sensitive compounds, odors, pheromones, hormones, and neurotransmitters

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
V1R super family cl17934
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
19-301 1.01e-43

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


The actual alignment was detected with superfamily member pfam03402:

Pssm-ID: 460912  Cd Length: 292  Bit Score: 151.34  E-value: 1.01e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    19 GVIGNSSLLMLYVYTFFFKpHFKKLVDSVFMHLTIVNMLTIAFTLIKdIMLSFGVPNFLDDIGCKTVLFSFRVSRGLSIC 98
Cdd:pfam03402  14 GISANSILLLFHIFMFFTG-HRLRPTDLIIGHLSLIHLLMLLTMGII-AMDAFGSQGRWDDTTCKFLIYLHRVLRGLSLC 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    99 TTSVLSTFQVITITPSNSKWASwLKPRLSTWIFSSLLCSWLINLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNH 178
Cdd:pfam03402  92 TTCLLSVLQAITLSPRSSCLAK-FKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSCSILPMSYS 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761   179 NSGSFFSLLLTHDLFYVAVMVWASLYMVIFLYRHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLY 258
Cdd:pfam03402 171 MQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSLSPKASPEQRATRTILLLMSFFVVMYILDSIVSYS 250
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 21717761   259 GFYTKEKiPRLESINAILTTCYPTVCPFFLMKNNKVILQFTSS 301
Cdd:pfam03402 251 RTMFKND-SIFYCVQILVSHSYATVSPFVLISTEKRIIKFLRS 292
 
Name Accession Description Interval E-value
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
19-301 1.01e-43

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 151.34  E-value: 1.01e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    19 GVIGNSSLLMLYVYTFFFKpHFKKLVDSVFMHLTIVNMLTIAFTLIKdIMLSFGVPNFLDDIGCKTVLFSFRVSRGLSIC 98
Cdd:pfam03402  14 GISANSILLLFHIFMFFTG-HRLRPTDLIIGHLSLIHLLMLLTMGII-AMDAFGSQGRWDDTTCKFLIYLHRVLRGLSLC 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    99 TTSVLSTFQVITITPSNSKWASwLKPRLSTWIFSSLLCSWLINLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNH 178
Cdd:pfam03402  92 TTCLLSVLQAITLSPRSSCLAK-FKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSCSILPMSYS 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761   179 NSGSFFSLLLTHDLFYVAVMVWASLYMVIFLYRHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLY 258
Cdd:pfam03402 171 MQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSLSPKASPEQRATRTILLLMSFFVVMYILDSIVSYS 250
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 21717761   259 GFYTKEKiPRLESINAILTTCYPTVCPFFLMKNNKVILQFTSS 301
Cdd:pfam03402 251 RTMFKND-SIFYCVQILVSHSYATVSPFVLISTEKRIIKFLRS 292
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
19-298 1.89e-43

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 150.88  E-value: 1.89e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761  19 GVIGNSSLLMLYVYTFFFKpHFKKLVDSVFMHLTIVNMLTIAFTLIKDIMLSFGvPNFLDDIGCKTVLFSFRVSRGLSIC 98
Cdd:cd13949  14 GISANSILLLFHIFMFFRG-HRPRSTDLIIGHLSLIHLLLLLTMGIIATDAFFS-WGGWDDITCKFLIYLHRVLRGLSLC 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761  99 TTSVLSTFQVITITPSNSKWASwLKPRLSTWIFSSLLCSWLINLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNH 178
Cdd:cd13949  92 TTCLLSVLQAITLSPRSSCLAK-FKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQSCSILPMSYS 170
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761 179 NSGSFFSLLLTHDLFYVAVMVWASLYMVIFLYRHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLY 258
Cdd:cd13949 171 MQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSLSPKASPEQRATQTILLLMSFFVVMYILDSIVFYS 250
                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 21717761 259 GFYTKEKiPRLESINAILTTCYPTVCPFFLMKNNKVILQF 298
Cdd:cd13949 251 RTKFKND-SILYCVQIIVSHSYATVSPFVFLMTEKHIIKF 289
 
Name Accession Description Interval E-value
V1R pfam03402
Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known ...
19-301 1.01e-43

Vomeronasal organ pheromone receptor family, V1R; This family represents one of two known vomeronasal organ receptor families, the V1R family.


Pssm-ID: 460912  Cd Length: 292  Bit Score: 151.34  E-value: 1.01e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    19 GVIGNSSLLMLYVYTFFFKpHFKKLVDSVFMHLTIVNMLTIAFTLIKdIMLSFGVPNFLDDIGCKTVLFSFRVSRGLSIC 98
Cdd:pfam03402  14 GISANSILLLFHIFMFFTG-HRLRPTDLIIGHLSLIHLLMLLTMGII-AMDAFGSQGRWDDTTCKFLIYLHRVLRGLSLC 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761    99 TTSVLSTFQVITITPSNSKWASwLKPRLSTWIFSSLLCSWLINLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNH 178
Cdd:pfam03402  92 TTCLLSVLQAITLSPRSSCLAK-FKHKSPHHISGAFLFLWVLYMSISSHLLLSIIATPNLTSSSFIYVTQSCSILPMSYS 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761   179 NSGSFFSLLLTHDLFYVAVMVWASLYMVIFLYRHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLY 258
Cdd:pfam03402 171 MQSLFSTLLASRDVFLIGLMVLSSGYMVALLCRHKKQAQHLHGTSLSPKASPEQRATRTILLLMSFFVVMYILDSIVSYS 250
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 21717761   259 GFYTKEKiPRLESINAILTTCYPTVCPFFLMKNNKVILQFTSS 301
Cdd:pfam03402 251 RTMFKND-SIFYCVQILVSHSYATVSPFVLISTEKRIIKFLRS 292
7tm_V1R_pheromone cd13949
vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G ...
19-298 1.89e-43

vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily; This family represents vomeronasal type-1 receptors (V1Rs) that are specifically expressed in the vomeronasal organ (VNO), which is the sensory organ of the accessory olfactory system present in amphibians, reptiles, and non-primate mammals such as mice and rodents, but it is non-functional or absent in humans, apes and monkeys. The VNO detects pheromones, chemicals released from animals that can influence social and reproductive behaviors, such as male-male aggression or sexual mating, in other members of the same species. On the other hand, the olfactory epithelium, which contains olfactory receptor neurons inside the nasal cavity, is responsible for detecting odor molecules (smells). There are two types of vertebrate pheromones: (1) small volatile molecules such as 2-heptanone, a substance in the urine of both male and female that extends estrous cycle length in female mice; and (2) water-soluble molecules such as the major histocompatibility complex (HMC) class-I peptide, which can induce the pregnancy block effect, the tendency for female rodents to abort their pregnancies upon exposure to the scent of an unknown male. While V1Rs and G-alpha(i2) protein are co-expressed in the apical neurons of the VNO, V2Rs (type-2 vomeronasal receptors) and G-alpha(o) protein are coexpressed in the basal layer of the VNO. Activation of V1R or V2R causes stimulation of phospholipase pathway, generating diacylglycerol (DAG) and inositol 1,4,5-triphosphate (IP3). V1Rs have a short N-terminal extracellular domain, whereas V2Rs contain a long N-terminal extracellular domain, which is believed to bind pheromones. Although V1Rs share the seven-transmembrane domain structure with V1Rs and olfactory receptors, they share little sequence similarity with each other.


Pssm-ID: 320087  Cd Length: 295  Bit Score: 150.88  E-value: 1.89e-43
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761  19 GVIGNSSLLMLYVYTFFFKpHFKKLVDSVFMHLTIVNMLTIAFTLIKDIMLSFGvPNFLDDIGCKTVLFSFRVSRGLSIC 98
Cdd:cd13949  14 GISANSILLLFHIFMFFRG-HRPRSTDLIIGHLSLIHLLLLLTMGIIATDAFFS-WGGWDDITCKFLIYLHRVLRGLSLC 91
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761  99 TTSVLSTFQVITITPSNSKWASwLKPRLSTWIFSSLLCSWLINLVIYGYMLDMVIAKTNKTHVGNGYSDGYCQNKHFGNH 178
Cdd:cd13949  92 TTCLLSVLQAITLSPRSSCLAK-FKHKSPHHISGAFLFLWVLYMLISSHLLVSIIATPNLTSNNFIYVTQSCSILPMSYS 170
                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21717761 179 NSGSFFSLLLTHDLFYVAVMVWASLYMVIFLYRHYKRSQHLHSRSLSSQSSPERKATHNILSLVSCFVLIYCLNNSITLY 258
Cdd:cd13949 171 MQSLFSTLLAFRDVFLIGLMLLSSGYMVALLHRHKKQVQHLHSTSLSPKASPEQRATQTILLLMSFFVVMYILDSIVFYS 250
                       250       260       270       280
                ....*....|....*....|....*....|....*....|
gi 21717761 259 GFYTKEKiPRLESINAILTTCYPTVCPFFLMKNNKVILQF 298
Cdd:cd13949 251 RTKFKND-SILYCVQIIVSHSYATVSPFVFLMTEKHIIKF 289
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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