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Conserved domains on  [gi|20357515|ref|NP_619730|]
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macrophage scavenger receptor types I and II isoform type 3 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Macscav_rec pfam03523
Macrophage scavenger receptor;
121-169 1.01e-26

Macrophage scavenger receptor;


:

Pssm-ID: 397543  Cd Length: 49  Bit Score: 100.59  E-value: 1.01e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 20357515   121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGH 169
Cdd:pfam03523   1 MEKRIQYISDMEANLIDSEHFQNFSMTTDQRFNDVLLQLNTLVSSVQEH 49
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
318-387 1.02e-15

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


:

Pssm-ID: 425734 [Multi-domain]  Cd Length: 97  Bit Score: 72.00  E-value: 1.02e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515   318 GLPGYAGRPGNSGPKGQkgekgsgntlSTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTCT 387
Cdd:pfam00530  38 GCGGAVSASSGASFFGP----------GTGPIWLDDVRCSGNETSLWQCPHRPWGNHNCSHSEDAGVICS 97
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
280-334 6.95e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


:

Pssm-ID: 396114 [Multi-domain]  Cd Length: 57  Bit Score: 54.42  E-value: 6.95e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 20357515   280 EKGDRGPTGEsgprgfpgpIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQ 334
Cdd:pfam01391  11 PPGPPGPPGP---------PGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB super family cl45768
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
200-339 3.66e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


The actual alignment was detected with superfamily member NF038329:

Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 54.89  E-value: 3.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  200 KIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEIKGEVKVLNNITNDLRLKDWEHSQTLRNITLIQGPPGPPG 279
Cdd:NF038329  56 TQQRKLQELREAFPRLEEIYKSTPLDDTTVNKIYKYLEERDKKLNSYLEELDEGLQQLKGDGEKGEPGPAGPAGPAGEQG 135
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195
 
Name Accession Description Interval E-value
Macscav_rec pfam03523
Macrophage scavenger receptor;
121-169 1.01e-26

Macrophage scavenger receptor;


Pssm-ID: 397543  Cd Length: 49  Bit Score: 100.59  E-value: 1.01e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 20357515   121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGH 169
Cdd:pfam03523   1 MEKRIQYISDMEANLIDSEHFQNFSMTTDQRFNDVLLQLNTLVSSVQEH 49
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
318-387 1.02e-15

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 425734 [Multi-domain]  Cd Length: 97  Bit Score: 72.00  E-value: 1.02e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515   318 GLPGYAGRPGNSGPKGQkgekgsgntlSTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTCT 387
Cdd:pfam00530  38 GCGGAVSASSGASFFGP----------GTGPIWLDDVRCSGNETSLWQCPHRPWGNHNCSHSEDAGVICS 97
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
346-387 1.38e-14

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 68.91  E-value: 1.38e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 20357515    346 TGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTCT 387
Cdd:smart00202  60 SGPIWLDNVRCSGTEASLSDCPHSGWGSHNCSHGEDAGVVCS 101
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
280-334 6.95e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 396114 [Multi-domain]  Cd Length: 57  Bit Score: 54.42  E-value: 6.95e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 20357515   280 EKGDRGPTGEsgprgfpgpIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQ 334
Cdd:pfam01391  11 PPGPPGPPGP---------PGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
200-339 3.66e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 54.89  E-value: 3.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  200 KIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEIKGEVKVLNNITNDLRLKDWEHSQTLRNITLIQGPPGPPG 279
Cdd:NF038329  56 TQQRKLQELREAFPRLEEIYKSTPLDDTTVNKIYKYLEERDKKLNSYLEELDEGLQQLKGDGEKGEPGPAGPAGPAGEQG 135
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 8.55e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 47.57  E-value: 8.55e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 160 EKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 7.01e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 44.49  E-value: 7.01e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG 296
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-348 1.87e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 43.34  E-value: 1.87e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 20357515  280 EKGDRGPTGEsgprgfpgpigpPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKGSGNTLSTGP 348
Cdd:NF038329 184 AKGPAGEKGP------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 2.53e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 42.95  E-value: 2.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAG 213
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
278-348 1.34e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 40.64  E-value: 1.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20357515  278 PGEKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGP--KGQKGEKG-SGNTLSTGP 348
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPagDGQQGPDGdPGPTGEDGP 249
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
279-339 1.42e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 40.64  E-value: 1.42e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 20357515  279 GEKGDRGPTGESGPRGFPgpigppglkGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 260 GPRGDRGEAGPDGPDGKD---------GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDG 311
 
Name Accession Description Interval E-value
Macscav_rec pfam03523
Macrophage scavenger receptor;
121-169 1.01e-26

Macrophage scavenger receptor;


Pssm-ID: 397543  Cd Length: 49  Bit Score: 100.59  E-value: 1.01e-26
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 20357515   121 MEKRIQHILDMEANLMDTEHFQNFSMTTDQRFNDILLQLSTLFSSVQGH 169
Cdd:pfam03523   1 MEKRIQYISDMEANLIDSEHFQNFSMTTDQRFNDVLLQLNTLVSSVQEH 49
SRCR pfam00530
Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular ...
318-387 1.02e-15

Scavenger receptor cysteine-rich domain; These domains are disulphide rich extracellular domains. These domains are found in several extracellular receptors and may be involved in protein-protein interactions.


Pssm-ID: 425734 [Multi-domain]  Cd Length: 97  Bit Score: 72.00  E-value: 1.02e-15
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515   318 GLPGYAGRPGNSGPKGQkgekgsgntlSTGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTCT 387
Cdd:pfam00530  38 GCGGAVSASSGASFFGP----------GTGPIWLDDVRCSGNETSLWQCPHRPWGNHNCSHSEDAGVICS 97
SR smart00202
Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR ...
346-387 1.38e-14

Scavenger receptor Cys-rich; The sea urchin egg peptide speract contains 4 repeats of SR domains that contain 6 conserved cysteines. May bind bacterial antigens in the protein MARCO.


Pssm-ID: 214555 [Multi-domain]  Cd Length: 101  Bit Score: 68.91  E-value: 1.38e-14
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 20357515    346 TGPIWLNEVFCFGRESSIEECKIRQWGTRACSHSEDAGVTCT 387
Cdd:smart00202  60 SGPIWLDNVRCSGTEASLSDCPHSGWGSHNCSHGEDAGVVCS 101
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
280-334 6.95e-10

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 396114 [Multi-domain]  Cd Length: 57  Bit Score: 54.42  E-value: 6.95e-10
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 20357515   280 EKGDRGPTGEsgprgfpgpIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQ 334
Cdd:pfam01391  11 PPGPPGPPGP---------PGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
200-339 3.66e-08

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 54.89  E-value: 3.66e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  200 KIQENTFKQQEEISKLEERVYNVSAEIMAMKEEQVHLEQEIKGEVKVLNNITNDLRLKDWEHSQTLRNITLIQGPPGPPG 279
Cdd:NF038329  56 TQQRKLQELREAFPRLEEIYKSTPLDDTTVNKIYKYLEERDKKLNSYLEELDEGLQQLKGDGEKGEPGPAGPAGPAGEQG 135
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 136 PRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQG 195
Collagen pfam01391
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ...
280-339 4.30e-07

Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.


Pssm-ID: 396114 [Multi-domain]  Cd Length: 57  Bit Score: 46.33  E-value: 4.30e-07
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515   280 EKGDRGPTGEsgprgfpgpigppglKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:pfam01391   5 PPGPPGPPGP---------------PGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 8.55e-06

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 47.57  E-value: 8.55e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 160 EKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 7.01e-05

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 44.49  E-value: 7.01e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 237 PDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDG 296
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-348 1.87e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 43.34  E-value: 1.87e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 20357515  280 EKGDRGPTGEsgprgfpgpigpPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKGSGNTLSTGP 348
Cdd:NF038329 184 AKGPAGEKGP------------QGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGD 240
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
280-339 2.53e-04

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 42.95  E-value: 2.53e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 20357515  280 EKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 154 PQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAG 213
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
278-348 1.34e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 40.64  E-value: 1.34e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 20357515  278 PGEKGDRGPTGESGPRGFPGPIGPPGLKGDRGAIGFPGSRGLPGYAGRPGNSGP--KGQKGEKG-SGNTLSTGP 348
Cdd:NF038329 176 AGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPagDGQQGPDGdPGPTGEDGP 249
gly_rich_SclB NF038329
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ...
279-339 1.42e-03

LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.


Pssm-ID: 439624 [Multi-domain]  Cd Length: 440  Bit Score: 40.64  E-value: 1.42e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 20357515  279 GEKGDRGPTGESGPRGFPgpigppglkGDRGAIGFPGSRGLPGYAGRPGNSGPKGQKGEKG 339
Cdd:NF038329 260 GPRGDRGEAGPDGPDGKD---------GERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDG 311
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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