|
Name |
Accession |
Description |
Interval |
E-value |
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
39-354 |
1.25e-118 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 346.09 E-value: 1.25e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 39 PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGpELFRLRVLELNASDERGIQV 118
Cdd:PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYG-EDWRENFLELNASDERGIDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 119 VREKVKNFAQLTVSGSrsdgkpcPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFR 198
Cdd:PRK00440 85 IRNKIKEFARTAPVGG-------APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFR 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 199 FKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLtgGKEVSEDVITDIAGVIPAATIDGIF 278
Cdd:PRK00440 158 FSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITGTARPEEIREMI 235
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21703948 279 TACHSGSFDKLEAVVKNL-IDEGHAATQLVNQLHDAIIEnENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCA 354
Cdd:PRK00440 236 ELALNGDFTEAREKLRDLmIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADFRITEGANERIQLEALLA 311
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
38-354 |
1.03e-83 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 256.96 E-value: 1.03e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPeLFRLRVLELNASDERGIQ 117
Cdd:PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 118 VVREKVKNFAQLTVSgsrsdgkpCPP--FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 195
Cdd:PLN03025 80 VVRNKIKMFAQKKVT--------LPPgrHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 196 KFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQsATRLtGGKEVSEDVITDIAGVIPAATID 275
Cdd:PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQ-ATHS-GFGFVNQENVFKVCDQPHPLHVK 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 276 GIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHdAIIENENLSDKHKsiiTEKLAEVDKC---LADGADEHLQLMSL 352
Cdd:PLN03025 230 NIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLF-RVVKNYDMPEFLK---LEYLREIGFAhmrICDGVGSLLQLSGL 305
|
..
gi 21703948 353 CA 354
Cdd:PLN03025 306 LA 307
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
40-355 |
5.61e-65 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 209.46 E-value: 5.61e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGpELFRLRVLELNASD--ERGIQ 117
Cdd:PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG-DPWENNFTEFNVADffDQGKK 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 118 VVREKvKNFAQLTVSGSRS---------------------DGkpcpPFKIVILDEADSMTSAAQAALRRTMEKESKTTRF 176
Cdd:PRK12402 84 YLVED-PRFAHFLGTDKRIrsskidnfkhvlkeyasyrplSA----DYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 177 CLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGgkE 256
Cdd:PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAG--E 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 257 VSEDVITDIAGVIPA-ATIDGIFTACHSGSFDKLEAVVKNL-IDEGHAATQLVNQLHDAIIENENlSDKHKSIITeKLAE 334
Cdd:PRK12402 237 ITMEAAYEALGDVGTdEVIESLLDAAEAGDFTDARKTLDDLlIDEGLSGGEVLEELLRVARSRYR-GDNLARLHR-LAAD 314
|
330 340
....*....|....*....|.
gi 21703948 335 VDKCLADGADEHLQLMSLCAT 355
Cdd:PRK12402 315 ADARLTDGANDRIQLEALLAE 335
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
85-354 |
1.84e-55 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 194.67 E-value: 1.84e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 85 TSTILAAARELFGpELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcPPFKIVILDEADSMTSAAQAALR 164
Cdd:PRK04132 580 TTAALALARELFG-ENWRHNFLELNASDERGINVIREKVKEFARTKPIGG-------ASFKIIFLDEADALTQDAQQALR 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 165 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITF 244
Cdd:PRK04132 652 RTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINI 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 245 LQSATRLTggKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKL-EAVVKNLIDEGHAATQLVNQLHDAIIeNENLSDK 323
Cdd:PRK04132 732 LQAAAALD--DKITDENVFLVASRARPEDIREMMLLALKGNFLKArEKLREILLKQGLSGEDVLVQMHREVF-NLPIDEP 808
|
250 260 270
....*....|....*....|....*....|.
gi 21703948 324 HKSIITEKLAEVDKCLADGADEHLQLMSLCA 354
Cdd:PRK04132 809 KKVELADKIGEYNFRLVEGANEMIQLEALLA 839
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
55-354 |
1.52e-49 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 167.84 E-value: 1.52e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 55 QDEVVAVLRKSLEGADLP-NLLFYGPPGTGKTSTILAAARELFG-------------PELFRLR----VLELNA---SDE 113
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPhALLLHGPPGIGKTTLALALARDLLCenpeggkacgqchSRLMAAGnhpdLLELNPeekSDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 114 RGIQVVREkVKNFAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSR 193
Cdd:COG0470 81 IGIDQIRE-LGEFLSLTPLEGG--------RKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSR 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 194 CSKFRFKPLSDkiqqERLLDIAEKENVkiGNEEIAYLVKISEGDLRKAITFLQsatRLTGGKEVSEDVITDIAGVIPAAT 273
Cdd:COG0470 152 CQVIRFRPPSE----EEALAWLREEGV--DEDALEAILRLAGGDPRAAINLLQ---ALAGRKELLEDLAALLSRDRALEL 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 274 IDGIFTACHSGSFDkleavvknlideghaatQLVNQLHDAIIenENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLC 353
Cdd:COG0470 223 LDALLKAEALELLD-----------------WLLKWLLDNLP--LEYAGEDLARAYEALSEADRRLGRYANDRLLLEALL 283
|
.
gi 21703948 354 A 354
Cdd:COG0470 284 A 284
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
40-361 |
2.06e-40 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 144.75 E-value: 2.06e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGP-PGTGKTSTILAAARELfGPElfrlrVLELNASDERgIQV 118
Cdd:PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPsPGTGKTTVAKALCNEV-GAE-----VLFVNGSDCR-IDF 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 119 VREKVKNFAQlTVSgsrsdgkPCPPFKIVILDEAD-SMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 197
Cdd:PHA02544 84 VRNRLTRFAS-TVS-------LTGGGKVIIIDEFDrLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVI 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 198 RFKPLSDKIQQE-------RLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQsatRLTGGKEVSEDVITDIAGvip 270
Cdd:PHA02544 156 DFGVPTKEEQIEmmkqmivRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQ---RYASTGKIDAGILSEVTN--- 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 271 aATIDGIFTACHSGSFDKLEAVVKNLIDEGhaaTQLVNQLHDAIIENEnlsdKHKSII--TEKLAEVDKCLADGADEHLQ 348
Cdd:PHA02544 230 -SDIDDVVEALKAKDFKAVRALAPNYANDY---ASFVGKLYDELYPQV----TPPSIIrlIEIIGENNQYHGFAADQEIH 301
|
330
....*....|...
gi 21703948 349 LMSLCATVMQQLT 361
Cdd:PHA02544 302 LLYLLTQLMLECE 314
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
37-260 |
4.40e-35 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 133.89 E-value: 4.40e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 37 PVPWVEKYRPKCVDEVAFQDEVVAVLRKSLE----GADLPNLLFYGPPGTGKTSTILAAARElfgpelFRLRVLELNASD 112
Cdd:PRK04195 1 MMPWVEKYRPKTLSDVVGNEKAKEQLREWIEswlkGKPKKALLLYGPPGVGKTSLAHALAND------YGWEVIELNASD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 113 ERGIQVVREKVKNFAQL-TVSGSRSdgkpcppfKIVILDEADSM-----TSAAQAALRRTmekesKTTRFCLIC---NYV 183
Cdd:PRK04195 75 QRTADVIERVAGEAATSgSLFGARR--------KLILLDEVDGIhgnedRGGARAILELI-----KKAKQPIILtanDPY 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATrlTGGKEVSED 260
Cdd:PRK04195 142 DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIA--EGYGKLTLE 216
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
46-315 |
1.85e-26 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 107.58 E-value: 1.85e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 46 PKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA-----RELFGP--------ELFRLR---VL 106
Cdd:COG2812 6 PQTFDDVVGQEHVVRTLKNALASGRLAHaYLFTGPRGVGKTTLarILAKAlncenGPTGEPcgecescrAIAAGShpdVI 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 107 EL--NASdERGIQVVREKVKNFAQLTVSGsrsdgkpcpPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 184
Cdd:COG2812 86 EIdaEAS-NIGVDDIRELIEKVSYAPVEG---------RYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQ 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 185 RIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSAtrltggkevsedvitD 264
Cdd:COG2812 156 KLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQA---------------I 220
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 21703948 265 IAGVIPA-ATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQL----HDAII 315
Cdd:COG2812 221 AFGLLDRrELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLlsllRDLLL 276
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
43-337 |
3.17e-26 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 109.08 E-value: 3.17e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA-----RELFGP-----------ELFRL 103
Cdd:PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALKKNSISHaYIFAGPRGTGKTTVarILAKSlncenRKGVEPcnecracrsidEGTFM 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVReKVKNfaqlTVSGSRSDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK14962 87 DVIELDAASNRGIDEIR-KIRD----AVGYRPMEGK----YKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKeVSEDVIT 263
Cdd:PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGK-ITLETVH 236
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21703948 264 DIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDKHKSI-ITEKLAEVDK 337
Cdd:PRK14962 237 EALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIqVSRQLLNILR 311
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
42-267 |
5.33e-25 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 104.78 E-value: 5.33e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 42 EKYRPKCVDEVAFQDEVVA---VLRKSLEGADLPNLLFYGPPGTGKTSTILAAARElfgpelFRLRVLELNASDErGIQV 118
Cdd:PRK13342 4 ERMRPKTLDEVVGQEHLLGpgkPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGA------TDAPFEALSAVTS-GVKD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 119 VREKVKNFAQLTVSGSRsdgkpcppfKIVILDEADSMTSAAQAALRRTMEKES-----KTTR---FclicnyvsRIIEPL 190
Cdd:PRK13342 77 LREVIEEARQRRSAGRR---------TILFIDEIHRFNKAQQDALLPHVEDGTitligATTEnpsF--------EVNPAL 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 191 TSRCSKFRFKPLSDK-IQQ--ERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLtgGKEVSEDVITDIAG 267
Cdd:PRK13342 140 LSRAQVFELKPLSEEdIEQllKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG--VDSITLELLEEALQ 217
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
38-314 |
1.02e-24 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 104.91 E-value: 1.02e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAARELFGPELFR------------ 102
Cdd:PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHaYIFAGPRGTGKTTIarILAKVLNCLNPQEGEpcgkcencveid 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 ----LRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Cdd:PRK14953 84 kgsfPDLIEIDAASNRGIDDIRALRDAVSYTPIKGK---------YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKeVS 258
Cdd:PRK14953 155 CTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGK-VT 233
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 21703948 259 EDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAI 314
Cdd:PRK14953 234 IKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEI 289
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
40-263 |
6.48e-24 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 103.36 E-value: 6.48e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 40 WVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA------RELFGP-----ELFR--L 103
Cdd:PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHaYLFSGPRGTGKTSVakIFANAlncshkTDLLEPcqeciENVNnsL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVR---EKVKNFAQLTvsgsrsdgkpcpPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Cdd:PRK07133 88 DIIEMDAASNNGVDEIReliENVKNLPTQS------------KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 181 NYVSRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVS 258
Cdd:PRK07133 156 TEVHKI--PLTilSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITL 233
|
....*
gi 21703948 259 EDVIT 263
Cdd:PRK07133 234 KNVEE 238
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
55-201 |
3.87e-23 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 94.14 E-value: 3.87e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 55 QDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPelfRLRVLELNASDERGIQVVREKVKNFAQLTVSGS 134
Cdd:cd00009 3 QEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP---GAPFLYLNASDLLEGLVVAELFGHFLVRLLFEL 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 21703948 135 RSDGKPCppfkIVILDEADSMTSAAQAALRRTMEKESKTT------RFCLICNYVS--RIIEPLTSRC-SKFRFKP 201
Cdd:cd00009 80 AEKAKPG----VLFIDEIDSLSRGAQNALLRVLETLNDLRidrenvRVIGATNRPLlgDLDRALYDRLdIRIVIPL 151
|
|
| Rep_fac_C |
pfam08542 |
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication ... |
269-354 |
7.71e-23 |
|
Replication factor C C-terminal domain; This is the C-terminal domain of RFC (replication factor-C) protein of the clamp loader complex which binds to the DNA sliding clamp (proliferating cell nuclear antigen, PCNA). The five modules of RFC assemble into a right-handed spiral, which results in only three of the five RFC subunits (RFC-A, RFC-B and RFC-C) making contact with PCNA, leaving a wedge-shaped gap between RFC-E and the PCNA clamp-loader complex. The C-terminal is vital for the correct orientation of RFC-E with respect to RFC-A.
Pssm-ID: 462513 [Multi-domain] Cd Length: 87 Bit Score: 91.00 E-value: 7.71e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 269 IPAATIDGIFTACHSGSFDKLEAVVKN-LIDEGHAATQLVNQLHDAIIENEnLSDKHKSIITEKLAEVDKCLADGADEHL 347
Cdd:pfam08542 1 PHPEDIEEILNSCLNGDFDEAYKKVRElLVEKGYSLQDIITQLHRVVKSLD-LPEEVKLELLEKLGEIEYRLSEGASEKL 79
|
....*..
gi 21703948 348 QLMSLCA 354
Cdd:pfam08542 80 QLSALLA 86
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
42-313 |
4.88e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 91.05 E-value: 4.88e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 42 EKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAARELFGP--------ELFRL------- 103
Cdd:PRK14963 6 QRARPITFDEVVGQEHVKEVLLAALRQGRLGHaYLFSGPRGVGKTTTarLIAMAVNCSGEdpkpcgecESCLAvrrgahp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVREKVKNFAQLTVSGSRsdgkpcppfKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK14963 86 DVLEIDAASNNSVEDVRDLREKVLLAPLRGGR---------KVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSAtrLTGGKEVSEDVIT 263
Cdd:PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERL--LALGTPVTRKQVE 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 21703948 264 DIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDA 313
Cdd:PRK14963 235 EALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEA 284
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
43-253 |
2.63e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 88.01 E-value: 2.63e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGP------ELFRLRVLELNASDERG 115
Cdd:PRK14970 10 KYRPQTFDDVVGQSHITNTLLNAIENNHLAQaLLFCGPRGVGKTTCARILARKINQPgyddpnEDFSFNIFELDAASNNS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 116 IQVVREKVKNfaqltVSGSRSDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCS 195
Cdd:PRK14970 90 VDDIRNLIDQ-----VRIPPQTGK----YKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQ 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 21703948 196 KFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTG 253
Cdd:PRK14970 161 IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCG 218
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
43-323 |
4.99e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 88.08 E-value: 4.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAARELFGP-------------ELFR---L 103
Cdd:PRK14956 11 KYRPQFFRDVIHQDLAIGALQNALKSGKIGHaYIFFGPRGVGKTTIarILAKRLNCENPignepcnectsclEITKgisS 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVREKVKNfaqltVSGSRSDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK14956 91 DVLEIDAASNRGIENIRELRDN-----VKFAPMGGK----YKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEF 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSedviT 263
Cdd:PRK14956 162 HKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTG----V 237
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 21703948 264 DIAGVIPAATIDG--------IFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIENENLSDK 323
Cdd:PRK14956 238 KIRKMIGYHGIEFltsfikslIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADR 305
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
45-267 |
5.06e-19 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 87.80 E-value: 5.06e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 45 RPKCVDEVAFQDEVVA---VLRKSLEGADLPNLLFYGPPGTGKTS--TILAAArelfgpelFRLRVLELNASDErGIQVV 119
Cdd:COG2256 20 RPRTLDEVVGQEHLLGpgkPLRRAIEAGRLSSMILWGPPGTGKTTlaRLIANA--------TDAEFVALSAVTS-GVKDI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 120 REKVKNfAQLtvsgSRSDGKPCppfkIVILDEADSMTSAAQAALRRTMEKESKTtrfcLIC----N-YVSrIIEPLTSRC 194
Cdd:COG2256 91 REVIEE-ARE----RRAYGRRT----ILFVDEIHRFNKAQQDALLPHVEDGTIT----LIGatteNpSFE-VNSALLSRC 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 195 SKFRFKPLSDK-IQQ--ERLLDIAEK----ENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLT---GGKEVSEDVITD 264
Cdd:COG2256 157 RVFVLKPLSEEdLEQllERALADDERglggYKLELDDEALEALARLADGDARRALNALELAVLSAppdGVIEITLELVEE 236
|
...
gi 21703948 265 IAG 267
Cdd:COG2256 237 ALQ 239
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
74-202 |
1.64e-17 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 78.02 E-value: 1.64e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARELfgpelfRLRVLELNASDERGIQvVREKVKNFAQLtVSGSRSDgKPCppfkIVILDEAD 153
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKEL------GAPFIEISGSELVSKY-VGESEKRLREL-FEAAKKL-APC----VIFIDEID 67
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21703948 154 SMTSA-----------AQAALRRTMEKESKTTR---FCLICNYVSRIIEPLTSRCSKFRFKPL 202
Cdd:pfam00004 68 ALAGSrgsggdsesrrVVNQLLTELDGFTSSNSkviVIAATNRPDKLDPALLGRFDRIIEFPL 130
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
42-269 |
4.59e-17 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 82.59 E-value: 4.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 42 EKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTS--TILAAARELFGP------------ELFR---- 102
Cdd:PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAILNNKLTHaYIFSGPRGIGKTSiaKIFAKAINCLNPkdgdccnscsvcESINtnqs 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 182
Cdd:PRK05896 88 VDIVELDAASNNGVDEIRNIIDNINYLPTTFK---------YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTE 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 183 VSRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTgGKEVSED 260
Cdd:PRK05896 159 FQKI--PLTiiSRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFK-NSEIDIE 235
|
....*....
gi 21703948 261 VITDIAGVI 269
Cdd:PRK05896 236 DINKTFGLV 244
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
43-277 |
5.22e-17 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 82.14 E-value: 5.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAAREL---FGP---------ELFRLR----- 104
Cdd:PRK14964 6 KYRPSSFKDLVGQDVLVRILRNAFTLNKIPQsILLVGASGVGKTTCARIISLCLncsNGPtsdpcgtchNCISIKnsnhp 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 105 -VLELNASDERGIQVVREKVKNFAQLTVSgSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK14964 86 dVIEIDAASNTSVDDIKVILENSCYLPIS-SK--------FKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKeVSEDV 261
Cdd:PRK14964 157 KKI--PVTiiSRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNK-ISEKS 233
|
250
....*....|....*.
gi 21703948 262 ITDIAGVIPAATIDGI 277
Cdd:PRK14964 234 VRDLLGCVDKHILEDL 249
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
43-310 |
1.22e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 80.59 E-value: 1.22e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELFR------------------- 102
Cdd:PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALRFNRAAHaYLFSGIRGTGKTTLARIFAKALNCQNPTEdqepcnqcasckeissgts 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 LRVLELNASDERGIQVVREkvknfAQLTVSGSRSDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 182
Cdd:PRK06305 90 LDVLEIDGASHRGIEDIRQ-----INETVLFTPSKSR----YKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 183 VSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKeVSEDVI 262
Cdd:PRK06305 161 IHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKS-LDPDSV 239
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 21703948 263 TDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQL 310
Cdd:PRK06305 240 AKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDL 287
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
43-307 |
1.82e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 80.58 E-value: 1.82e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAAREL---FGP------ELF---------RL 103
Cdd:PRK06647 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANaYIFSGPRGVGKTSSARAFARCLncvNGPtpmpcgECSscksidndnSL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVREkVKNFAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK06647 89 DVIEIDGASNTSVQDVRQ-IKEEIMFPPASSR--------YRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGkEVSEDVIT 263
Cdd:PRK06647 160 HKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDS-DITLEQIR 238
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 21703948 264 DIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLV 307
Cdd:PRK06647 239 SKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFL 282
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
43-312 |
2.05e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 80.56 E-value: 2.05e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA------------------RELfgPELF 101
Cdd:PRK14965 9 KYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHaFLFTGARGVGKTSTarILAKAlnceqgltaepcnvcppcVEI--TEGR 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 102 RLRVLELNASDERGIQVVREKVKNFAQLTvSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Cdd:PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLP-SRSR--------YKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 182 YVSRIIEPLTSRCSKFRFK--PLSdKIqQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSaTRLTGGKEVSE 259
Cdd:PRK14965 158 EPHKVPITILSRCQRFDFRriPLQ-KI-VDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQ-VLAFCGDAVGD 234
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 21703948 260 DVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHD 312
Cdd:PRK14965 235 DDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELID 287
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
39-263 |
6.96e-16 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 78.94 E-value: 6.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 39 PWVEKYRPKCVDEVAFQDEVVA---VLRKSLEGADLPNLLFYGPPGTGKTS--TILAAArelfgpelFRLRVLELNASdE 113
Cdd:PRK13341 17 PLADRLRPRTLEEFVGQDHILGegrLLRRAIKADRVGSLILYGPPGVGKTTlaRIIANH--------TRAHFSSLNAV-L 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 114 RGIQVVREKVKN-FAQLTVSGSRSdgkpcppfkIVILDEADSMTSAAQAALRRTMEKESKTtrfcLIC----NYVSRIIE 188
Cdd:PRK13341 88 AGVKDLRAEVDRaKERLERHGKRT---------ILFIDEVHRFNKAQQDALLPWVENGTIT----LIGatteNPYFEVNK 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 189 PLTSRCSKFRFKPLSD----KIQQERLLDIAE---KENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDV 261
Cdd:PRK13341 155 ALVSRSRLFRLKSLSDedlhQLLKRALQDKERgygDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLID 234
|
..
gi 21703948 262 IT 263
Cdd:PRK13341 235 IT 236
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
43-241 |
1.33e-14 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 75.00 E-value: 1.33e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADL-PNLLFYGPPGTGKTST--ILAaaRELF-----GP--------ELFR---- 102
Cdd:PRK14948 9 KYRPQRFDELVGQEAIATTLKNALISNRIaPAYLFTGPRGTGKTSSarILA--KSLNclnsdKPtpepcgkcELCRaiaa 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 ---LRVLELNASDERGIQVVREKVKNfAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Cdd:PRK14948 87 gnaLDVIEIDAASNTGVDNIRELIER-AQFAPVQAR--------WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLA 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21703948 180 CNYVSRIIEPLTSRCSKFRFK--PLSDKIQQerLLDIAEKENVKIGNEEIAYLVKISEGDLRKA 241
Cdd:PRK14948 158 TTDPQRVLPTIISRCQRFDFRriPLEAMVQH--LSEIAEKESIEIEPEALTLVAQRSQGGLRDA 219
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
202-266 |
1.95e-14 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 67.17 E-value: 1.95e-14
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21703948 202 LSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRltGGKEVSEDVITDIA 266
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDLQAAAA--GGGVITEEDVYEVA 63
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
43-319 |
2.24e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 74.00 E-value: 2.24e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKT--STILAAA------------------RELFG---P 98
Cdd:PRK14958 9 KWRPRCFQEVIGQAPVVRALSNALDQQYLHHaYLFTGTRGVGKTtiSRILAKClncekgvsanpcndcencREIDEgrfP 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 99 ELFrlrvlELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Cdd:PRK14958 89 DLF-----EVDAASRTKVEDTRELLDNIPYAPTKGR---------FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFIL 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 179 ICNYVSRIIEPLTSRCSKF---RFKPLSDKIQQERLLdiaEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGK 255
Cdd:PRK14958 155 ATTDHHKLPVTVLSRCLQFhlaQLPPLQIAAHCQHLL---KEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGK 231
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21703948 256 EVSEDVITDIAGVIPAATIDgIFTACHSGSFDKLEAVVKNLIDEG----HAATQLVNQLH---------DAIIENEN 319
Cdd:PRK14958 232 VLIADVKTMLGTIEPLLLFD-ILEALAAKAGDRLLGCVTRLVEQGvdfsNALADLLSLLHqiaiiqtvpEALIENDS 307
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
50-247 |
3.20e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 72.63 E-value: 3.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 50 DEVAFQDEVVAVLRKSLEGADL-PNLLFYGPPGTGKTSTILAAARELF----GPELFRLRVLELNASD------------ 112
Cdd:PRK07399 4 ANLIGQPLAIELLTAAIKQNRIaPAYLFAGPEGVGRKLAALCFIEGLLsqgsPSKNIRRRLEEGNHPDllwveptyqhqg 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 113 ---------ERGI------QV----VREkVKNF-AQLTVSGSRsdgkpcppfKIVILDEADSMTSAAQAALRRTMEkESK 172
Cdd:PRK07399 84 klitaseaeEAGLkrkappQIrleqIRE-IKRFlSRPPLEAPR---------KVVVIEDAETMNEAAANALLKTLE-EPG 152
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21703948 173 TTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQS 247
Cdd:PRK07399 153 NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIANIEQLQS 227
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
39-300 |
4.10e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 73.56 E-value: 4.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 39 PWVEKYRPKCVDEVAFQDEVVAVL-RKSLEGADLPNLLFYGPPGTGKTSTILAAAREL---FGP--------ELFR---- 102
Cdd:PRK14959 5 SLTARYRPQTFAEVAGQETVKAILsRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALnceTAPtgepcntcEQCRkvtq 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 ---LRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Cdd:PRK14959 85 gmhVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGR---------YKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLA 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLtGGKEVSE 259
Cdd:PRK14959 156 TTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLAL-GESRLTI 234
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 21703948 260 DVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEG 300
Cdd:PRK14959 235 DGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRG 275
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
43-296 |
4.16e-14 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 73.19 E-value: 4.16e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAAREL-------------------FGPELFr 102
Cdd:PRK14957 9 KYRPQSFAEVAGQQHALNSLVHALETQKVHHaYLFTGTRGVGKTTLGRLLAKCLncktgvtaepcnkcencvaINNNSF- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 182
Cdd:PRK14957 88 IDLIEIDAASRTGVEETKEILDNIQYMPSQGR---------YKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTD 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 183 VSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGkEVSEDVI 262
Cdd:PRK14957 159 YHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGG-ELKQAQI 237
|
250 260 270
....*....|....*....|....*....|....
gi 21703948 263 TDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNL 296
Cdd:PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNL 271
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
43-310 |
1.52e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 71.44 E-value: 1.52e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEG-----AdlpnLLFYGPPGTGKTST--ILAAARELFGP---------ELFR---- 102
Cdd:PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQgkishA----YLFSGPRGTGKTSAakIFAKAVNCLNPpdgepcnecEICKaitn 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 ---LRVLELNASDERG---IQVVREKVKnFAQltvsgsrSDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRF 176
Cdd:PRK05563 85 gslMDVIEIDAASNNGvdeIRDIRDKVK-YAP-------SEAK----YKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIF 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 177 CLICNYVSRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGG 254
Cdd:PRK05563 153 ILATTEPHKI--PATilSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDG 230
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 21703948 255 KeVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQL 310
Cdd:PRK05563 231 K-VTYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDL 285
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
43-349 |
2.83e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 70.85 E-value: 2.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILA-----------------AARELFGPELFr 102
Cdd:PRK14960 8 KYRPRNFNELVGQNHVSRALSSALERGRLHHaYLFTGTRGVGKTTIarILAkclncetgvtstpcevcATCKAVNEGRF- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 LRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 182
Cdd:PRK14960 87 IDLIEIDAASRTKVEDTRELLDNVPYAPTQGR---------FKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 183 VSRIIEPLTSRCSKFRFKPLS-DKIQQErLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDV 261
Cdd:PRK14960 158 PQKLPITVISRCLQFTLRPLAvDEITKH-LGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 262 iTDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNL----IDEGHAATQLVNQLHD-AIIEN-ENLSDKHKSIITEKLAEV 335
Cdd:PRK14960 237 -KEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFryqaLDVSLVLDQLISTLHElALLQYlPELGLKYSEEINAKILQL 315
|
330
....*....|....
gi 21703948 336 DKCLadgADEHLQL 349
Cdd:PRK14960 316 SKLI---SAQDLQL 326
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
43-296 |
4.71e-13 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 70.06 E-value: 4.71e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELF---GP---------------ELFRL 103
Cdd:PRK08451 7 KYRPKHFDELIGQESVSKTLSLALDNNRLAHaYLFSGLRGSGKTSSARIFARALVceqGPsstpcdtciqcqsalENRHI 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVREKVKNfAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNyv 183
Cdd:PRK08451 87 DIIEMDAASNRGIDDIRELIEQ-TKYKPSMAR--------FKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATT-- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 sriiEPLT------SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATrLTGGKEV 257
Cdd:PRK08451 156 ----DPLKlpatilSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAI-IYCKNAI 230
|
250 260 270
....*....|....*....|....*....|....*....
gi 21703948 258 SEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNL 296
Cdd:PRK08451 231 TESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL 269
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
43-280 |
1.38e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 68.68 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSL-EGADLPNLLFYGPPGTGKTST--ILAAARELFGPELfRLR--------------- 104
Cdd:PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIaEGRVAHAYLFTGPRGVGKTSTarILAKAVNCTTNDP-KGRpcgtcemcraiaegs 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 105 ---VLELNASDERGIQVVREkVKNFAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Cdd:PRK14950 88 avdVIEMDAASHTSVDDARE-IIERVQFRPALAR--------YKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATT 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFL-QSATrlTGGKEVSED 260
Cdd:PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLqQLAT--TYGGEISLS 236
|
250 260
....*....|....*....|
gi 21703948 261 VITDIAGVIPAATIDGIFTA 280
Cdd:PRK14950 237 QVQSLLGISGDEEVKALAEA 256
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
43-268 |
2.88e-12 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 67.81 E-value: 2.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILA------------------AARELFGPELF 101
Cdd:PRK08691 9 KWRPKTFADLVGQEHVVKALQNALDEGRLHHaYLLTGTRGVGKTTIarILAkslncenaqhgepcgvcqSCTQIDAGRYV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 102 RLrvLELNASDERGIQVVREKVKNfAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Cdd:PRK08691 89 DL--LEIDAASNTGIDNIREVLEN-AQYAPTAGK--------YKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 182 YVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDV 261
Cdd:PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237
|
....*..
gi 21703948 262 ITDIAGV 268
Cdd:PRK08691 238 RQMIGAV 244
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
43-296 |
6.20e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 66.70 E-value: 6.20e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKT--STILA------------------AARELFGPELF 101
Cdd:PRK14969 9 KWRPKSFSELVGQEHVVRALTNALEQQRLHHaYLFTGTRGVGKTtlARILAkslncetgvtatpcgvcsACLEIDSGRFV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 102 RLrvLELNASDERGIQVVREKVKNfAQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 181
Cdd:PRK14969 89 DL--IEVDAASNTQVDAMRELLDN-AQYAPTRGR--------FKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 182 YVSRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLtGGKEVSE 259
Cdd:PRK14969 158 DPQKI--PVTvlSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAY-GGGTVNE 234
|
250 260 270
....*....|....*....|....*....|....*..
gi 21703948 260 DVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNL 296
Cdd:PRK14969 235 SEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAM 271
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
43-271 |
7.45e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 65.99 E-value: 7.45e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLE-GADLPNLLFYGPPGTGKTSTILAAAREL-----FGPELFR-------------L 103
Cdd:PRK14961 9 KWRPQYFRDIIGQKHIVTAISNGLSlGRIHHAWLLSGTRGVGKTTIARLLAKSLncqngITSNPCRkciickeiekglcL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 104 RVLELNASDERGIQVVREKVKNFaQLTVSGSRsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV 183
Cdd:PRK14961 89 DLIEIDAASRTKVEEMREILDNI-YYSPSKSR--------FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 184 SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGkEVSEDVIT 263
Cdd:PRK14961 160 EKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKG-NINIKNVT 238
|
....*...
gi 21703948 264 DIAGVIPA 271
Cdd:PRK14961 239 DMLGLLNE 246
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
55-203 |
1.27e-11 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 62.23 E-value: 1.27e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 55 QDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELFR----------LRVLELN-------ASDERGI 116
Cdd:pfam13177 2 QPEAIQLLQNSLENGRLSHaYLFSGPEGVGKLELALAFAKALFCEEPGDdlpcgqcrscRRIESGNhpdlviiEPEGQSI 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 117 QV--VREKVKNFAQLTVSGSRsdgkpcppfKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 194
Cdd:pfam13177 82 KIdqIRELQKEFSKSPYEGKK---------KVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRC 152
|
....*....
gi 21703948 195 SKFRFKPLS 203
Cdd:pfam13177 153 QIIRFKPLS 161
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
34-139 |
1.36e-11 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 66.02 E-value: 1.36e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 34 KVKPVPWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTilAAARELFGPELFRLRVLELNASDE 113
Cdd:PRK04132 3 KVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT--GDTKVIANGELFEIGELVEKISNG 80
|
90 100
....*....|....*....|....*..
gi 21703948 114 R-GIQVVRekvknfaQLTVSGSRSDGK 139
Cdd:PRK04132 81 KfGPTPVN-------GLKVLGIDEDGK 100
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
38-322 |
5.96e-11 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 63.72 E-value: 5.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 38 VPWVEKYRPKCVDEVAFQDEVVAVLRKS-LEGADLPNLLFYGPPGTGKTST--ILAAARELFGP--ELFRLR-------- 104
Cdd:PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTiLNDRLAGGYLLTGIRGVGKTTSarIIAKAVNCSALitENTTIKtceqctnc 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 105 ----------VLELNASDERGIQVVREKVKNfaqltvsgsrSDGKPCP-PFKIVILDEADSMTSAAQAALRRTMEKESKT 173
Cdd:PRK06645 89 isfnnhnhpdIIEIDAASKTSVDDIRRIIES----------AEYKPLQgKHKIFIIDEVHMLSKGAFNALLKTLEEPPPH 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 174 TRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTG 253
Cdd:PRK06645 159 IIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSA 238
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21703948 254 --GKEVSEDVITDIAGVIpaatidgiftaCHSGSFDKLEAVVKNlidEGHAATQLVNQLH----DAIIENENLSD 322
Cdd:PRK06645 239 ksDNIISPQVINQMLGLV-----------DSSVIIEFVEYIIHR---ETEKAINLINKLYgssvNLEIFIESVSD 299
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
144-329 |
1.74e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 61.59 E-value: 1.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENvkIG 223
Cdd:PRK09112 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SD 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 224 NEEIAYLVKISEGDLRKAITFLQSatrltGGKEVSEDVITDIAGVIPAATI-------------DGIFTACHSGSFDKLE 290
Cdd:PRK09112 220 GEITEALLQRSKGSVRKALLLLNY-----GGLEIIATIDQLLAGSGPDARKahkladalsgresEVQFDFFRDHLLDRIM 294
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 21703948 291 AVVKNLIDEGHAAT-----QLVNQLHDAIIENE--NLsDKHKSIIT 329
Cdd:PRK09112 295 AEARRAAEAGDLALaerlaRLWSEIIEEIVEAEayNL-DRKQTVIS 339
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
73-199 |
5.95e-10 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 57.00 E-value: 5.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 73 NLLFYGPPGTGKTSTILAAARELFGPElfrLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDG---------KPCPp 143
Cdd:smart00382 4 VILIVGPPGSGKTTLARALARELGPPG---GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRlrlalalarKLKP- 79
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21703948 144 fKIVILDEADSMTSAAQAALRR--------TMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRF 199
Cdd:smart00382 80 -DVLILDEITSLLDAEQEALLLlleelrllLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRI 142
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
43-262 |
1.19e-09 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 59.79 E-value: 1.19e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAARELFGP-----------------ELFR 102
Cdd:PRK14971 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHaYLFCGPRGVGKTTCarIFAKTINCQNLtadgeacnecescvafnEQRS 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 LRVLELNASDERGIQVVR---EKVKNFAQLtvsgsrsdGKpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Cdd:PRK14971 90 YNIHELDAASNNSVDDIRnliEQVRIPPQI--------GK----YKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILA 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 180 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSE 259
Cdd:PRK14971 158 TTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYK 237
|
...
gi 21703948 260 DVI 262
Cdd:PRK14971 238 SVI 240
|
|
| rad24 |
TIGR00602 |
checkpoint protein rad24; All proteins in this family for which functions are known are ... |
39-246 |
2.17e-08 |
|
checkpoint protein rad24; All proteins in this family for which functions are known are involved in DNA damage tolerance (likely cell cycle checkpoints).This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129690 [Multi-domain] Cd Length: 637 Bit Score: 55.73 E-value: 2.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 39 PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-----LLFYGPPGTGKTSTILAAAREL-------FGPELFRLRVL 106
Cdd:TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENapkriLLITGPSGCGKSTTIKILSKELgiqvqewSNPTLPDFQKN 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 107 ELNASDERG--IQVVREKVKNFAQLTVSGSRSDGKPCPPF----KIVILDEADSMTSAAQAALRRTME-KESKTTRFCLI 179
Cdd:TIGR00602 153 DHKVTLSLEscFSNFQSQIEVFSEFLLRATNKLQMLGDDLmtdkKIILVEDLPNQFYRDTRALHEILRwKYVSIGRCPLV 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 180 CnYVSRIIEPLTS--------------------RCSKFRFKPLSDKIQQERLLDIAEKENVKIG-------NEEIAYLVK 232
Cdd:TIGR00602 233 F-IITESLEGDNNqrrllfpaetimnkeileepRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGekikvpkKTSVELLCQ 311
|
250
....*....|....
gi 21703948 233 ISEGDLRKAITFLQ 246
Cdd:TIGR00602 312 GCSGDIRSAINSLQ 325
|
|
| CDC6 |
COG1474 |
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair]; |
56-260 |
4.67e-08 |
|
Cdc6-related protein, AAA superfamily ATPase [Replication, recombination and repair];
Pssm-ID: 441083 [Multi-domain] Cd Length: 389 Bit Score: 54.47 E-value: 4.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 56 DEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAAREL---FGPELFRLRVLELNASDERGI-QVVR---EKVKNFAQ 128
Cdd:COG1474 36 EELASALRPALRGERPSNVLIYGPTGTGKTAVAKYVLEELeeeAEERGVDVRVVYVNCRQASTRyRVLSrilEELGSGED 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 129 LTVSG-SRSD------------GKPCppfkIVILDEADSMTSAAQ----AALRRTMEkESKTTRFCLICnyVSR---IIE 188
Cdd:COG1474 116 IPSTGlSTDElfdrlyealderDGVL----VVVLDEIDYLVDDEGddllYQLLRANE-ELEGARVGVIG--ISNdleFLE 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 189 PLTSR------CSKFRFKP-----LSDkIQQERlLDIAEKENVkIGNEEIAYLVKIS---EGDLRKAITFLQSATRL--- 251
Cdd:COG1474 189 NLDPRvksslgEEEIVFPPydadeLRD-ILEDR-AELAFYDGV-LSDEVIPLIAALAaqeHGDARKAIDLLRVAGEIaer 265
|
....*....
gi 21703948 252 TGGKEVSED 260
Cdd:COG1474 266 EGSDRVTEE 274
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
50-263 |
5.15e-08 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 53.35 E-value: 5.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 50 DEVAFQDEVVAVLR---KSLEGADLP---------NLLFYGPPGTGKTSTILAAARELfgpelfRLRVLELNASDERGiQ 117
Cdd:COG1223 2 DDVVGQEEAKKKLKliiKELRRRENLrkfglwpprKILFYGPPGTGKTMLAEALAGEL------KLPLLTVRLDSLIG-S 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 118 VVREKVKNFAQLTvsgSRSDGKPCppfkIVILDEADSMtsaaqaALRRTMEKESKTTR----------------FCLIC- 180
Cdd:COG1223 75 YLGETARNLRKLF---DFARRAPC----VIFFDEFDAI------AKDRGDQNDVGEVKrvvnallqeldglpsgSVVIAa 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 181 -NYVSRIIEPLTSRCS-KFRFkPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEG----DLRKAITFLQSATRLTGG 254
Cdd:COG1223 142 tNHPELLDSALWRRFDeVIEF-PLPDKEERKEILELNLKKFPLPFELDLKKLAKKLEGlsgaDIEKVLKTALKKAILEDR 220
|
....*....
gi 21703948 255 KEVSEDVIT 263
Cdd:COG1223 221 EKVTKEDLE 229
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
145-236 |
6.46e-08 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 53.50 E-value: 6.46e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 145 KIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSdkiQQERLLDIAEKENVkIGN 224
Cdd:PRK05564 95 KVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLS---KEEIEKFISYKYND-IKE 170
|
90
....*....|..
gi 21703948 225 EEIAYLVKISEG 236
Cdd:PRK05564 171 EEKKSAIAFSDG 182
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
210-262 |
1.48e-07 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 47.85 E-value: 1.48e-07
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 21703948 210 RLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
Cdd:cd18133 9 RLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDDGKISLDRV 61
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
102-245 |
2.03e-07 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 52.34 E-value: 2.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 102 RLRVLELNASDERG-----IQV--VREkVKNFAQLT--VSGSRsdgkpcppfkIVILDEADSMTSAAQAALRRTMEKESK 172
Cdd:PRK07471 102 GLLTLERSWNEKGKrlrtvITVdeVRE-LISFFGLTaaEGGWR----------VVIVDTADEMNANAANALLKVLEEPPA 170
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 21703948 173 TTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDkiqqERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFL 245
Cdd:PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP----EDVIDALAAAGPDLPDDPRAALAALAEGSVGRALRLA 239
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
43-245 |
2.43e-07 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 52.20 E-value: 2.43e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA----RELFGPELFR------------- 102
Cdd:PRK14955 9 KYRPKKFADITAQEHITRTIQNSLRMGRVGHgYIFSGLRGVGKTTAarVFAKAvncqRMIDDADYLQevtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 -------LRVLELNASDERG---IQVVREKVKNFAQltvsgsrsDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESK 172
Cdd:PRK14955 89 dfdagtsLNISEFDAASNNSvddIRLLRENVRYGPQ--------KGR----YRVYIIDEVHMLSIAAFNAFLKTLEEPPP 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 21703948 173 TTRFCLICNYVSRIIEPLTSRCSKFRFK--PLSDkIQQErLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFL 245
Cdd:PRK14955 157 HAIFIFATTELHKIPATIASRCQRFNFKriPLEE-IQQQ-LQGICEAEGISVDADALQLIGRKAQGSMRDAQSIL 229
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
72-175 |
5.29e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 48.82 E-value: 5.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 72 PNLLFYGPPGTGKTSTILAAARELfGPELFRLRVLELNasdERGIQVVREKVKN-FAQLtvsgsrSDGKPCppfkIVILD 150
Cdd:cd19481 27 KGILLYGPPGTGKTLLAKALAGEL-GLPLIVVKLSSLL---SKYVGESEKNLRKiFERA------RRLAPC----ILFID 92
|
90 100
....*....|....*....|....*
gi 21703948 151 EADSMtsaaqaALRRTMEKESKTTR 175
Cdd:cd19481 93 EIDAI------GRKRDSSGESGELR 111
|
|
| Rad17 |
pfam03215 |
Rad17 P-loop domain; |
39-100 |
6.83e-07 |
|
Rad17 P-loop domain;
Pssm-ID: 367398 [Multi-domain] Cd Length: 186 Bit Score: 49.19 E-value: 6.83e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 21703948 39 PWVEKYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-----LLFYGPPGTGKTSTILAAARELfGPEL 100
Cdd:pfam03215 8 QWYEKYKPNCLEQLAVHKRKIKDVQEWLDAMFLENakhriLLISGPSGCGKSTVIKELSKEL-GPKY 73
|
|
| COG2842 |
COG2842 |
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons]; ... |
75-262 |
8.39e-07 |
|
Bacteriophage DNA transposition protein, AAA+ family ATPase [Mobilome: prophages, transposons];
Pssm-ID: 442090 [Multi-domain] Cd Length: 254 Bit Score: 49.57 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 75 LFYGPPGTGKTSTILAAARE-----------LFGP-ELFRLRVLELNASDERG-----IQVVREKVKNFAQLtvsgsrsd 137
Cdd:COG2842 54 VVYGESGVGKTTAAREYANRnpnviyvtaspSWTSkELLEELAEELGIPAPPGtiadlRDRILERLAGTGRL-------- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 138 gkpcppfkiVILDEADSMTSAAQAALRR------------TMEK-ESKTTRFCLIcnyVSRIIEpltsrcsKFRFKPLSD 204
Cdd:COG2842 126 ---------LIIDEADHLKPKALEELRDihdetgvgvvliGMERlPAKLKRYEQL---YSRIGF-------WVEFKPLSL 186
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 21703948 205 KiQQERLLDIAekENVKIGnEEIAYLVKISEGDLR---KAITFLQSATRLTGGKEVSEDVI 262
Cdd:COG2842 187 E-DVRALAEAW--GELTDP-DLLELLHRITRGNLRrldRTLRLAARAAKRNGLTKITLDHV 243
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
43-255 |
1.11e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 50.48 E-value: 1.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKT--STILAAARELFGPE-------------------- 99
Cdd:PRK14951 9 KYRPRSFSEMVGQEHVVQALTNALTQQRLHHaYLFTGTRGVGKTtvSRILAKSLNCQGPDgqggitatpcgvcqacrdid 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 100 --LFrLRVLELNASDERGIQVVREKVKNFAQLTVSGSrsdgkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFC 177
Cdd:PRK14951 89 sgRF-VDYTELDAASNRGVDEVQQLLEQAVYKPVQGR---------FKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFV 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 178 LICNYVSRIiePLT--SRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGK 255
Cdd:PRK14951 159 LATTDPQKV--PVTvlSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQ 236
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
55-220 |
2.23e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 48.77 E-value: 2.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 55 QDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTSTILAAARELFGPELFR----------LRVLELN-------ASDERGI 116
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHaYLFEGAKGTGKKATALWLAKSLFCLERNGvepcgtctncKRIDSGNhpdvhlvAPDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 117 QV--VREKVKNFAQLTVSGSRsdgkpcppfKIVILDEADSMT-SAAQAALRRTMEKESKTTRFCLICNYvSRIIEPLTSR 193
Cdd:PRK08058 91 KKdqIRYLKEEFSKSGVESNK---------KVYIIEHADKMTaSAANSLLKFLEEPSGGTTAILLTENK-HQILPTILSR 160
|
170 180
....*....|....*....|....*..
gi 21703948 194 CSKFRFKPLsdkiQQERLLDIAEKENV 220
Cdd:PRK08058 161 CQVVEFRPL----PPESLIQRLQEEGI 183
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
74-242 |
2.40e-06 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 49.14 E-value: 2.40e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARELFGPelfrlrVLELNASDERGiQVVREKVKNFAQL--TVSGSrsdgKPCppfkIVILDE 151
Cdd:COG0464 194 LLLYGPPGTGKTLLARALAGELGLP------LIEVDLSDLVS-KYVGETEKNLREVfdKARGL----APC----VLFIDE 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 152 ADSMTSAAQAALRRTMEK---------ESKTTRFCLIC--NYVSRIIEPLTSRC-SKFRFkPLSDKIQQERLLDIAEKEN 219
Cdd:COG0464 259 ADALAGKRGEVGDGVGRRvvntlltemEELRSDVVVIAatNRPDLLDPALLRRFdEIIFF-PLPDAEERLEIFRIHLRKR 337
|
170 180
....*....|....*....|....*..
gi 21703948 220 VKIGNEEIAYLVKISEG----DLRKAI 242
Cdd:COG0464 338 PLDEDVDLEELAEATEGlsgaDIRNVV 364
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
45-95 |
2.43e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 47.11 E-value: 2.43e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 21703948 45 RPKCVDEVAFQDEVVAVLRKSLEGAD-----LPNLLFYGPPGTGKTSTILAAAREL 95
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKqrgeaLDHVLLYGPPGLGKTTLANIIANEM 57
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
43-262 |
2.83e-06 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 49.17 E-value: 2.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 43 KYRPKCVDEVAFQDEVVAVLRKSLEGADLPN-LLFYGPPGTGKTST--ILAAA----RELFGPELFR------------- 102
Cdd:PRK14954 9 KYRPSKFADITAQEHITHTIQNSLRMDRVGHgYIFSGLRGVGKTTAarVFAKAvncqRMIDDPVYLQevtepcgecescr 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 103 -------LRVLELNASDERG---IQVVREKVKNFAQltvsgsrsDGKpcppFKIVILDEADSMTSAAQAALRRTMEKESK 172
Cdd:PRK14954 89 dfdagtsLNISEFDAASNNSvddIRQLRENVRYGPQ--------KGR----YRVYIIDEVHMLSTAAFNAFLKTLEEPPP 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 173 TTRFCLICNYVSRIIEPLTSRCSKFRFK--PLsDKIQQErLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATR 250
Cdd:PRK14954 157 HAIFIFATTELHKIPATIASRCQRFNFKriPL-DEIQSQ-LQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234
|
250
....*....|..
gi 21703948 251 LTGGKEvSEDVI 262
Cdd:PRK14954 235 FSVGSE-AEKVI 245
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
145-310 |
1.64e-05 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 46.01 E-value: 1.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 145 KIVILDEADSMT--SAAQAALRRTMEKESKTTRFCLICNYV---SRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKEN 219
Cdd:COG1466 64 RLVIVRNAEFLKkpGEGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLKAAG 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 220 VKIGNEEIAYLVKISEGDLRKAITFLQS-ATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Cdd:COG1466 144 LRIDPDAAQLLAERVGGDLLALAQELEKlALYAGDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRRLLA 223
|
170
....*....|..
gi 21703948 299 EGHAATQLVNQL 310
Cdd:COG1466 224 EGEEPVLILAAL 235
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
45-95 |
2.28e-05 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 45.89 E-value: 2.28e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 21703948 45 RPKCVDEVAFQDEVVAVLRKSLEGAD-----LPNLLFYGPPGTGKTStiLAA--AREL 95
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEAAKkrgeaLDHVLLYGPPGLGKTT--LANiiANEM 75
|
|
| RecA-like_CDC48_r2-like |
cd19511 |
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase ... |
53-158 |
3.84e-05 |
|
second of two ATPase domains of CDC48/p97, PEX1 and -6, VAT and NVL, and similar ATPase domains; This subfamily includes the second of two ATPase domains of the molecular chaperone CDC48 in yeast and p97 or VCP in metazoans, Peroxisomal biogenesis factor 1 (PEX1) and -6 (PEX6), Valosin-containing protein-like ATPase (VAT), and nuclear VCP-like protein (NVL). This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410919 [Multi-domain] Cd Length: 159 Bit Score: 43.43 E-value: 3.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 53 AFQDEVVAVLRKSLE----GADLPN-LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVR 120
Cdd:cd19511 4 ELKEAVEWPLKHPDAfkrlGIRPPKgVLLYGPPGCGKTLLAKALASEaglnfisVKGPELFSKYVGE----SERAVREIF 79
|
90 100 110
....*....|....*....|....*....|....*...
gi 21703948 121 EKVKnfaqltvsgsrsDGKPCppfkIVILDEADSMTSA 158
Cdd:cd19511 80 QKAR------------QAAPC----IIFFDEIDSLAPR 101
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
50-95 |
4.16e-05 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 45.00 E-value: 4.16e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 21703948 50 DEVAFQDEVVAVLRKSLE------------GADLPN-LLFYGPPGTGKTSTILAAAREL 95
Cdd:COG1222 78 DDIGGLDEQIEEIREAVElplknpelfrkyGIEPPKgVLLYGPPGTGKTLLAKAVAGEL 136
|
|
| McrB |
COG1401 |
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB ... |
56-151 |
4.58e-05 |
|
5-methylcytosine-specific restriction endonuclease McrBC, GTP-binding regulatory subunit McrB [Defense mechanisms];
Pssm-ID: 441011 [Multi-domain] Cd Length: 477 Bit Score: 45.15 E-value: 4.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 56 DEVVAVLRKSlegadlPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNAS--DERGIQ-----------VVREK 122
Cdd:COG1401 212 EAFLAALKTK------KNVILAGPPGTGKTYLARRLAEALGGEDNGRIEFVQFHPSwsYEDFLLgyrpsldegkyEPTPG 285
|
90 100
....*....|....*....|....*....
gi 21703948 123 VknFAQLTVSGSRSDGKPCppfkIVILDE 151
Cdd:COG1401 286 I--FLRFCLKAEKNPDKPY----VLIIDE 308
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
78-162 |
8.94e-05 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 42.94 E-value: 8.94e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 78 GPPGTGKTsTILAAARELFGPELFRLRVLelnASDERGIQVVRE----KVKNFAQLTvsGSRSDGKPCPPFKIVILDEAd 153
Cdd:pfam13604 25 GPAGTGKT-TALKALREAWEAAGYRVIGL---APTGRAAKVLGEelgiPADTIAKLL--HRLGGRAGLDPGTLLIVDEA- 97
|
....*....
gi 21703948 154 SMTSAAQAA 162
Cdd:pfam13604 98 GMVGTRQMA 106
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
143-264 |
1.00e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 43.63 E-value: 1.00e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRfkplsdkiqqerlldIAEKENVKI 222
Cdd:PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH---------------IPMEEKTLV 159
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 21703948 223 GNEEIAYLVKISEGDlrkaITFLQSATRLTGGKEVSEDVITD 264
Cdd:PRK05917 160 SKEDIAYLIGYAQGK----ESVTEVGQIVKGSADTDKQVLRD 197
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
74-220 |
1.44e-04 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 43.15 E-value: 1.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTS-------TILAAARELFG----------------PELFRLRVLElnASDERGIQVVREKVkNFAQLT 130
Cdd:PRK05707 25 YLLHGPAGIGKRAlaerlaaALLCEAPQGGGacgsckgcqllragshPDNFVLEPEE--ADKTIKVDQVRELV-SFVVQT 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 131 vsgSRSDGkpcppFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFkPLSDKIQ--- 207
Cdd:PRK05707 102 ---AQLGG-----RKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC-PLPSNEEslq 172
|
170
....*....|....*
gi 21703948 208 --QERLLDIAEKENV 220
Cdd:PRK05707 173 wlQQALPESDERERI 187
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
45-95 |
1.80e-04 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 43.15 E-value: 1.80e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 21703948 45 RPKCVDEVAFQDEVVAVLRKSLEGAD-----LPNLLFYGPPGTGKT--STILaaAREL 95
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKkrgeaLDHVLLYGPPGLGKTtlAHII--ANEM 78
|
|
| RecA-like_ClpB_Hsp104-like |
cd19499 |
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and ... |
50-114 |
2.39e-04 |
|
Chaperone protein ClpB/Hsp104 subfamily; Bacterial Caseinolytic peptidase B (ClpB) and eukaryotic Heat shock protein 104 (Hsp104) are ATP-dependent molecular chaperones and essential proteins of the heat-shock response. ClpB/Hsp104 ATPases, in concert with the DnaK/Hsp70 chaperone system, disaggregate and reactivate aggregated proteins. This RecA-like_ClpB_Hsp104_like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410907 [Multi-domain] Cd Length: 178 Bit Score: 41.39 E-value: 2.39e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21703948 50 DEVAFQDE----VVAVLRKSLEGADLPN-----LLFYGPPGTGKTSTILAAARELFGPELFRLRVlELNASDER 114
Cdd:cd19499 11 ERVVGQDEavkaVSDAIRRARAGLSDPNrpigsFLFLGPTGVGKTELAKALAELLFGDEDNLIRI-DMSEYMEK 83
|
|
| RecA-like_PEX6_r2 |
cd19527 |
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as ... |
74-155 |
2.67e-04 |
|
second of two ATPase domains of Peroxisomal biogenesis factor 6 (PEX6); PEX6(also known as Peroxin61)/PEX1 is a protein unfoldase; PEX6 and PEX1 form a heterohexameric Type-2 AAA-ATPase complex and are essential for peroxisome biogenesis as they are required for the import of folded proteins into the peroxisomal matrix. This subfamily represents the second ATPase domain of PEX6. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410935 [Multi-domain] Cd Length: 160 Bit Score: 40.96 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVREKVKnfaqltvsgsrsDGKPCppfkI 146
Cdd:cd19527 29 ILLYGPPGTGKTLLAKAIATEcslnflsVKGPELINMYIGE----SEANVREVFQKAR------------DAKPC----V 88
|
....*....
gi 21703948 147 VILDEADSM 155
Cdd:cd19527 89 IFFDELDSL 97
|
|
| RecA-like_CDC48_r2-like |
cd19528 |
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or ... |
74-158 |
3.47e-04 |
|
second of two ATPase domains of CDC48 and similar ATPase domains; CDC48 in yeast and p97 or VCP in metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the second of the two ATPase domains. CDC48's roles include in the fragmentation of Golgi stacks during mitosis and for their reassembly after mitosis, and in the formation of the nuclear envelope, and of the transitional endoplasmic reticulum (tER). This RecA-like_cdc48_r2-like subfamily belongs to the RecA-like family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410936 [Multi-domain] Cd Length: 161 Bit Score: 40.57 E-value: 3.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVREKVKNFAqltvsgsrsdgkPCppfkI 146
Cdd:cd19528 30 VLFYGPPGCGKTLLAKAIANEcqanfisVKGPELLTMWFGE----SEANVRDIFDKARAAA------------PC----V 89
|
90
....*....|..
gi 21703948 147 VILDEADSMTSA 158
Cdd:cd19528 90 LFFDELDSIAKA 101
|
|
| RecA-like_CDC48_NLV2_r1-like |
cd19503 |
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and ... |
74-169 |
3.49e-04 |
|
first of two ATPase domains of CDC48 and NLV2, and similar ATPase domains; CDC48 in yeast and p97 or VCP metazoans is an ATP-dependent molecular chaperone which plays an essential role in many cellular processes, by segregating polyubiquitinated proteins from complexes or membranes. Cdc48/p97 consists of an N-terminal domain and two ATPase domains; this subfamily represents the first of the two ATPase domains. This subfamily also includes the first of the two ATPase domains of NVL (nuclear VCP-like protein) 2, an isoform of NVL mainly present in the nucleolus, which is involved in ribosome biogenesis, in telomerase assembly and the regulation of telomerase activity, and in pre-rRNA processing. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410911 [Multi-domain] Cd Length: 165 Bit Score: 40.74 E-value: 3.49e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVREKVKNFAqltvsgsrsdgkPCppfkI 146
Cdd:cd19503 37 VLLHGPPGTGKTLLARAVANEaganflsISGPSIVSKYLGE----SEKNLREIFEEARSHA------------PS----I 96
|
90 100
....*....|....*....|...
gi 21703948 147 VILDEADSMTSaAQAALRRTMEK 169
Cdd:cd19503 97 IFIDEIDALAP-KREEDQREVER 118
|
|
| DEXXQc_Upf1-like |
cd17934 |
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, ... |
78-106 |
5.01e-04 |
|
DEXXQ-box helicase domain of Upf1-like helicase; The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), coronavirus Nsp13, and similar proteins. They belong to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 438708 [Multi-domain] Cd Length: 121 Bit Score: 39.53 E-value: 5.01e-04
10 20
....*....|....*....|....*....
gi 21703948 78 GPPGTGKTSTILAAARELFGPELFRlRVL 106
Cdd:cd17934 6 GPPGTGKTTTIAAIVLQLLKGLRGK-RVL 33
|
|
| cdc6 |
PRK00411 |
ORC1-type DNA replication protein; |
57-248 |
5.12e-04 |
|
ORC1-type DNA replication protein;
Pssm-ID: 234751 [Multi-domain] Cd Length: 394 Bit Score: 41.76 E-value: 5.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 57 EVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELfGPELFRLRVLELNasdergIQVVREKVKNFAQLtvsGSRS 136
Cdd:PRK00411 41 ELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL-EEIAVKVVYVYIN------CQIDRTRYAIFSEI---ARQL 110
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 137 DGKPCP----PFK-----------------IVILDEADSM--TSAAQA--ALRRTMEkESKTTRFCLICnyVSR---IIE 188
Cdd:PRK00411 111 FGHPPPssglSFDelfdkiaeylderdrvlIVALDDINYLfeKEGNDVlySLLRAHE-EYPGARIGVIG--ISSdltFLY 187
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 21703948 189 PLTSRC-SKFR-----FKP-----LSDkIQQERlLDIAEKENVkIGNEEIAYLVKI---SEGDLRKAITFLQSA 248
Cdd:PRK00411 188 ILDPRVkSVFRpeeiyFPPytadeIFD-ILKDR-VEEGFYPGV-VDDEVLDLIADLtarEHGDARVAIDLLRRA 258
|
|
| TIGR02928 |
TIGR02928 |
orc1/cdc6 family replication initiation protein; Members of this protein family are found ... |
56-95 |
6.95e-04 |
|
orc1/cdc6 family replication initiation protein; Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274354 [Multi-domain] Cd Length: 365 Bit Score: 41.08 E-value: 6.95e-04
10 20 30 40
....*....|....*....|....*....|....*....|
gi 21703948 56 DEVVAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Cdd:TIGR02928 25 EELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64
|
|
| RecA-like_BCS1 |
cd19510 |
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of ... |
75-95 |
7.44e-04 |
|
Mitochondrial chaperone BCS1; Mitochondrial chaperone BCS1 is necessary for the assembly of mitochondrial respiratory chain complex III and plays an important role in the maintenance of mitochondrial tubular networks, respiratory chain assembly and formation of the LETM1 complex. RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410918 [Multi-domain] Cd Length: 153 Bit Score: 39.64 E-value: 7.44e-04
|
| RecA-like_NVL_r2-like |
cd19530 |
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
68-156 |
7.58e-04 |
|
second of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410938 [Multi-domain] Cd Length: 161 Bit Score: 39.78 E-value: 7.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 68 GADLP-NLLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVREKVKNFAqltvsgsrsdgk 139
Cdd:cd19530 26 GIDLPtGVLLYGPPGCGKTLLAKAVANEsganfisVKGPELLNKYVGE----SERAVRQVFQRARASA------------ 89
|
90
....*....|....*..
gi 21703948 140 PCppfkIVILDEADSMT 156
Cdd:cd19530 90 PC----VIFFDEVDALV 102
|
|
| RecA-like_NVL_r1-like |
cd19518 |
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL ... |
74-169 |
8.59e-04 |
|
first of two ATPase domains of NVL (nuclear VCP-like protein) and similar ATPase domains; NVL exists in two forms with N-terminal extensions of different lengths in mammalian cells. NVL has two alternatively spliced isoforms, a short form, NVL1, and a long form, NVL2. NVL2, the major species, is mainly present in the nucleolus, whereas NVL1 is nucleoplasmic. Each has an N-terminal domain, followed by two tandem ATPase domains; this subfamily includes the first of the two ATPase domains. NVL2 is involved in the biogenesis of the 60S ribosome subunit by associating specifically with ribosome protein L5 and modulating the function of DOB1. NVL2 is also required for telomerase assembly and the regulation of telomerase activity, and is involved in pre-rRNA processing. The role of NVL1 is unclear. This RecA-like_NVL_r1-like subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410926 [Multi-domain] Cd Length: 169 Bit Score: 39.70 E-value: 8.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARELFGPeLFRLRVLEL-----NASDERgIQVVREKVKNFAqltvsgsrsdgkPCppfkIVI 148
Cdd:cd19518 37 VLLHGPPGCGKTMLANAIAGELKVP-FLKISATEIvsgvsGESEEK-IRELFDQAISNA------------PC----IVF 98
|
90 100
....*....|....*....|.
gi 21703948 149 LDEADSMTSAAQAAlRRTMEK 169
Cdd:cd19518 99 IDEIDAITPKRESA-QREMER 118
|
|
| DEXXQc_Helz-like |
cd18038 |
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and ... |
56-95 |
9.60e-04 |
|
DEXXQ/H-box helicase domain of Helz-like helicase; This subfamily contains HELZ, Mov10L1, and similar proteins. Helicase with zinc finger (HELZ) acts as a helicase that plays a role in RNA metabolism during development. Moloney leukemia virus 10-like protein 1 (Mov10L1) binds Piwi-interacting RNA (piRNA) precursors to initiate piRNA processing. All are members of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350796 [Multi-domain] Cd Length: 229 Bit Score: 40.30 E-value: 9.60e-04
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 21703948 56 DEVVAVLRKSLEGA-DLPNLLFYGPPGTGKTSTILAAAREL 95
Cdd:cd18038 4 DEQKLAVRNIVTGTsRPPPYIIFGPPGTGKTVTLVEAILQV 44
|
|
| HLD_clamp_RarA |
cd18139 |
helical lid domain of recombination factor protein RarA; Recombination factor RarA ... |
217-267 |
1.15e-03 |
|
helical lid domain of recombination factor protein RarA; Recombination factor RarA (Replication associated recombination gene/protein A, also known as MgsA (Maintenance of genome stability A) or Mgs1 in yeast and WRNIP1 in mammals) is a member of the clamp-loader clade of the AAA+ superfamily. It functions as a tetramer. RarA co-localize with the replication fork throughout the cell cycle and may play a role in the rescue of stalled replication forks.
Pssm-ID: 350841 [Multi-domain] Cd Length: 75 Bit Score: 37.23 E-value: 1.15e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 21703948 217 KENVKIGNEEIAYLVKISEGDLRKAITFLQ---SATRLTGGKEVSEDVITDIAG 267
Cdd:cd18139 22 DRKVTIDDEALELLAEAADGDARSALNLLElavLSAEEDGGIVITLEDLEEVLQ 75
|
|
| AAA_22 |
pfam13401 |
AAA domain; |
74-179 |
1.26e-03 |
|
AAA domain;
Pssm-ID: 379165 [Multi-domain] Cd Length: 129 Bit Score: 38.48 E-value: 1.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARELfgpELFRLRVLELNASDERGIQVVREKVknFAQLTVSGSRSDGKP------------C 141
Cdd:pfam13401 8 LVLTGESGTGKTTLLRRLLEQL---PEVRDSVVFVDLPSGTSPKDLLRAL--LRALGLPLSGRLSKEellaalqqlllaL 82
|
90 100 110
....*....|....*....|....*....|....*...
gi 21703948 142 PPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Cdd:pfam13401 83 AVAVVLIIDEAQHLSLEALEELRDLLNLSSKLLQLILV 120
|
|
| RecA-like_Lon |
cd19500 |
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an ... |
57-105 |
1.31e-03 |
|
lon protease homolog 2 peroxisomal; Lon protease (also known as Lon peptidase) is an evolutionarily conserved ATP-dependent serine protease, present in bacteria and eukaryotic mitochondria and peroxisomes, which mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Lon protease is both an ATP-dependent peptidase and a protein-activated ATPase. This RecA-like Lon domain subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410908 [Multi-domain] Cd Length: 182 Bit Score: 39.46 E-value: 1.31e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 21703948 57 EVVAV--LRKSLEGadlPNLLFYGPPGTGKTSTILAAARELfGPELFRLRV 105
Cdd:cd19500 24 EYLAVrkLKGSMKG---PILCLVGPPGVGKTSLGKSIARAL-GRKFVRISL 70
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
144-201 |
1.54e-03 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 40.17 E-value: 1.54e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 21703948 144 FKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP 201
Cdd:PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTP 166
|
|
| DEXXQc_HELZ2-N |
cd18076 |
N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known ... |
55-95 |
4.72e-03 |
|
N-terminal DEXXQ-box helicase domain of HELZ2; Helicase with zinc finger 2 (HELZ2, also known as PPAR-alpha-interacting complex protein 285 or PRIC285 and PPAR-gamma DBD-interacting protein 1 or PDIP1) acts as a transcriptional coactivator for a number of nuclear receptors including PPARA, PPARG, THRA, THRB, and RXRA. It belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350834 [Multi-domain] Cd Length: 230 Bit Score: 37.95 E-value: 4.72e-03
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 21703948 55 QDEVVA-VLRKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Cdd:cd18076 6 QQLAFNfIAGKPSEARFVPPLLIYGPFGTGKTFTLAMAALEV 47
|
|
| RecA-like_VCP_r2 |
cd19529 |
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ... |
74-155 |
6.44e-03 |
|
second of two ATPase domains of Valosin-containing protein-like ATPase (VAT) and similar ATPase domains; The Valosin-containing protein-like ATPase of Thermoplasma acidophilum (VAT), is an archaeal homolog of the ubiquitous Cdc48/p97. It is a protein unfoldase that functions in concert with the 20S proteasome by unfolding proteasome substrates and passing them on for degradation. VAT forms a homohexamer, each monomer contains two tandem ATPase domains, referred to as D1 and D2, and an N-terminal domain. This subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410937 [Multi-domain] Cd Length: 159 Bit Score: 37.09 E-value: 6.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 74 LLFYGPPGTGKTSTILAAARE-------LFGPELFRLRVLElnasDERGIQVVREKVKNFAqltvsgsrsdgkPCppfkI 146
Cdd:cd19529 30 ILLYGPPGTGKTLLAKAVATEsnanfisVKGPELLSKWVGE----SEKAIREIFRKARQVA------------PC----V 89
|
....*....
gi 21703948 147 VILDEADSM 155
Cdd:cd19529 90 IFFDEIDSI 98
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
56-165 |
7.06e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.10 E-value: 7.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 56 DEVVAVLRKSLEGaDLPNLLFYGPPGTGKTSTILAAARELFGPelfRLRVLELNASDERGIQVVREKVKNFAQLTVSGSR 135
Cdd:pfam13191 10 EQLLDALDRVRSG-RPPSVLLTGEAGTGKTTLLRELLRALERD---GGYFLRGKCDENLPYSPLLEALTREGLLRQLLDE 85
|
90 100 110
....*....|....*....|....*....|
gi 21703948 136 SDGKPCPPFKIVILDEADSMTSAAQAALRR 165
Cdd:pfam13191 86 LESSLLEAWRAALLEALAPVPELPGDLAER 115
|
|
| RepA |
COG3598 |
RecA-family ATPase [Replication, recombination and repair]; |
75-192 |
8.06e-03 |
|
RecA-family ATPase [Replication, recombination and repair];
Pssm-ID: 442817 [Multi-domain] Cd Length: 313 Bit Score: 37.96 E-value: 8.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 75 LFYGPPGTGKTSTIL------AAARELFGPELFRLRVLELNAsdERGIQVVREKVKNFAQltvsgSRSDGKPCPPFKIVI 148
Cdd:COG3598 17 LLAGPPGTGKSFLALqlaaavAAGGPWLGRRVPPGKVLYLAA--EDDRGELRRRLKALGA-----DLGLPFADLDGRLRL 89
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 21703948 149 LDEADSMTSaaqAALRRTMEKESKTTRFCLIcnyvsrIIEPLTS 192
Cdd:COG3598 90 LSLAGDLDD---TDDLEALERAIEEEGPDLV------VIDPLAR 124
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
78-162 |
9.05e-03 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 36.38 E-value: 9.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 21703948 78 GPPGTGKTsTILAAARELFGPELFRLRVLelnASDERGIQVVREKVKNFAQlTV----------SGSRSDGKPCPPFKIV 147
Cdd:cd17933 19 GGAGTGKT-TTLKALLAALEAEGKRVVLA---APTGKAAKRLSESTGIEAS-TIhrllginpggGGFYYNEENPLDADLL 93
|
90
....*....|....*
gi 21703948 148 ILDEAdSMTSAAQAA 162
Cdd:cd17933 94 IVDEA-SMVDTRLMA 107
|
|
| Lon |
COG0466 |
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, ... |
60-86 |
9.40e-03 |
|
ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440234 [Multi-domain] Cd Length: 785 Bit Score: 38.07 E-value: 9.40e-03
10 20
....*....|....*....|....*....
gi 21703948 60 AV--LRKSLEGadlPNLLFYGPPGTGKTS 86
Cdd:COG0466 342 AVrkLKKKLKG---PILCLVGPPGVGKTS 367
|
|
| |
