|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
119-783 |
1.18e-16 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 85.11 E-value: 1.18e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 119 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTILQKK 198
Cdd:TIGR02168 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELE 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 199 HLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQH 278
Cdd:TIGR02168 355 SLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 279 CKEDSERLMEqqgaLLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQ------AQ 352
Cdd:TIGR02168 435 LKELQAELEE----LEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEgfsegvKA 510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 353 LRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEqlKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDL 432
Cdd:TIGR02168 511 LLKNQSGLSGILGVLSELISVDEGYEAAIEAALG--GRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQG 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 433 YVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVtdlvnqqqtleeKMREDRDSLVERLHRQTAEYSAFKLENERLK 512
Cdd:TIGR02168 589 NDREILKNIEGFLGVAKDLVKFDPKLRKALSYLLGGV------------LVVDDLDNALELAKKLRPGYRIVTLDGDLVR 656
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 513 ASF--------------------APMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENK 572
Cdd:TIGR02168 657 PGGvitggsaktnssilerrreiEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 573 ILKdemnKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKH 652
Cdd:TIGR02168 737 RLE----AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAEL 812
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 653 QASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAiEDARRQVEQTKEH 732
Cdd:TIGR02168 813 TLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL-LNERASLEEALAL 891
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|....
gi 310750408 733 ALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQS---RLQDLKDRL 783
Cdd:TIGR02168 892 LRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGlevRIDNLQERL 945
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
194-785 |
6.48e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.66 E-value: 6.48e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 194 ILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDL 273
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 274 LREQhcKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELlqeiqcekaqaktaselsksmesmrghlQAQL 353
Cdd:COG1196 311 RREL--EERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEA----------------------------EAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 354 RSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKgdrdKESLKKAIRAQKERAEKSEEYAEQLHVQLadkdly 433
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLEEELEELEEAL------ 430
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 434 vAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKA 513
Cdd:COG1196 431 -AELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEG 509
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 514 SFAP-MEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRL-EADEVAAQLERCDKENKilkdemnkeieAARRQFQS 591
Cdd:COG1196 510 VKAAlLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVvEDDEVAAAAIEYLKAAK-----------AGRATFLP 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 592 QLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELER 671
Cdd:COG1196 579 LDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSA 658
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 672 KLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQL 751
Cdd:COG1196 659 GGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELL 738
|
570 580 590 600
....*....|....*....|....*....|....*....|
gi 310750408 752 SRTKTELSQLRRSRDDADRR------YQSRLQDLKDRLEQ 785
Cdd:COG1196 739 EELLEEEELLEEEALEELPEppdleeLERELERLEREIEA 778
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
284-807 |
8.82e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 8.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 284 ERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRL 363
Cdd:TIGR02168 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEEL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 364 CMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHvQLADKdlyVAEALSTLES 443
Cdd:TIGR02168 322 EAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE-TLRSK---VAQLELQIAS 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 444 WRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLE-EKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKL 522
Cdd:TIGR02168 398 LNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAElKELQAELEELEEELEELQEELERLEEALEELREELEEAEQAL 477
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 523 NQAHLEVQQLKASVKNYEGMIDNYKS------QVMKTRLEAD----------EVAAQLERC--------------DKENK 572
Cdd:TIGR02168 478 DAAERELAQLQARLDSLERLQENLEGfsegvkALLKNQSGLSgilgvlseliSVDEGYEAAieaalggrlqavvvENLNA 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 573 ILKD-EMNKEIEAARRQF------------QSQLADLQQLPDILKITeAKLAECQDQLQGYERKNIDLTAIISDLRSRIE 639
Cdd:TIGR02168 558 AKKAiAFLKQNELGRVTFlpldsikgteiqGNDREILKNIEGFLGVA-KDLVKFDPKLRKALSYLLGGVLVVDDLDNALE 636
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 640 HQ-------------GDKL----------EMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQ 696
Cdd:TIGR02168 637 LAkklrpgyrivtldGDLVrpggvitggsAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQ 716
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 697 SQLRLEEKTRECGTLARQLESAiedarRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRL 776
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARL-----EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791
|
570 580 590
....*....|....*....|....*....|.
gi 310750408 777 QDLKDRLEQSESTNRSMQNYVQFLKSSYANV 807
Cdd:TIGR02168 792 EQLKEELKALREALDELRAELTLLNEEAANL 822
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
173-797 |
3.18e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 67.40 E-value: 3.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 173 EHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTC-TDINTLTR 251
Cdd:TIGR02169 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVkEKIGELEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 252 QKELLLQKLstfEETNRTLRDLL-REQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKA 330
Cdd:TIGR02169 302 EIASLERSI---AEKERELEDAEeRLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDK 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 331 QAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKA----- 405
Cdd:TIGR02169 379 EFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQewkle 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 406 -IRAQKERAEKS----EEYAEQLHVQLADKDLYVAEALSTLESWRSR------------------YNQV-----VKEKGD 457
Cdd:TIGR02169 459 qLAADLSKYEQElydlKEEYDRVEKELSKLQRELAEAEAQARASEERvrggraveevlkasiqgvHGTVaqlgsVGERYA 538
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 458 LELEI--------IVLND-----------------RVTDL----VNQQQTLEEKMRED---------------------- 486
Cdd:TIGR02169 539 TAIEVaagnrlnnVVVEDdavakeaiellkrrkagRATFLplnkMRDERRDLSILSEDgvigfavdlvefdpkyepafky 618
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 487 --RDSLV----ERLHRQTAEYSAFKLENERLKAS-------FAPMEDKLNQAHL--EVQQLKASVKNYEGMIDNYKSQVM 551
Cdd:TIGR02169 619 vfGDTLVvediEAARRLMGKYRMVTLEGELFEKSgamtggsRAPRGGILFSRSEpaELQRLRERLEGLKRELSSLQSELR 698
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 552 KTRLEADEVAAQLERCDKENKilkdEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAII 631
Cdd:TIGR02169 699 RIENRLDELSQELSDASRKIG----EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDL 774
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 632 SDLRSRIEHQGDKLEMAR-----EKHQASQKENKQLSLKVDELERKLEATS--------------AQNIEFLQVIAKREE 692
Cdd:TIGR02169 775 HKLEEALNDLEARLSHSRipeiqAELSKLEEEVSRIEARLREIEQKLNRLTlekeylekeiqelqEQRIDLKEQIKSIEK 854
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 693 AIHQSQLRLEEKTRECGTLA---RQLESAIEDARRQVEQTKEHAlskeRAAQNKILDLETQLSRTKTELSQLrrsrddad 769
Cdd:TIGR02169 855 EIENLNGKKEELEEELEELEaalRDLESRLGDLKKERDELEAQL----RELERKIEELEAQIEKKRKRLSEL-------- 922
|
730 740
....*....|....*....|....*...
gi 310750408 770 rryQSRLQDLKDRLEQSESTNRSMQNYV 797
Cdd:TIGR02169 923 ---KAKLEALEEELSEIEDPKGEDEEIP 947
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
465-788 |
2.18e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 2.18e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 465 LNDRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEYSAFKLEneRLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 542
Cdd:COG1196 191 LEDILGELERQLEPLERQAEkaERYRELKEELKELEAELLLLKLR--ELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 543 IDNYKSQVMKTRLEADEVAAQLERCDKEnkilKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 622
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAE----LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEE 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 623 KNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQniefLQVIAKREEAIHQSQLRLE 702
Cdd:COG1196 345 ELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQ----LEELEEAEEALLERLERLE 420
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 703 EKTRECGTLARQLESAIEDARRQVEQTKEHAL---SKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDL 779
Cdd:COG1196 421 EELEELEEALAELEEEEEEEEEALEEAAEEEAeleEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAE 500
|
....*....
gi 310750408 780 KDRLEQSES 788
Cdd:COG1196 501 ADYEGFLEG 509
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
252-703 |
2.60e-10 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 64.37 E-value: 2.60e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 252 QKELLLQKLSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLK-RLAEADSEKARLLLLLQDKDKEVEELL------- 322
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSELREaKRMYEDKIEELEKQLVLANsELTEARTERDQFSQESGNLDDQLQKLLadlhkre 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 323 QEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERS-GNQHKAEVEAI------MEQLKELKQKG 395
Cdd:pfam15921 391 KELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIqgknesLEKVSSLTAQL 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 396 DRDKESLKKAIR---AQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN------QVVKEKGD------LEL 460
Cdd:pfam15921 471 ESTKEMLRKVVEeltAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDlklqelQHLKNEGDhlrnvqTEC 550
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 461 EIIVLN---------------DRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQA 525
Cdd:pfam15921 551 EALKLQmaekdkvieilrqqiENMTQLVGQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDL 630
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 526 HLE--------VQQLKAsVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQ 597
Cdd:pfam15921 631 ELEkvklvnagSERLRA-VKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 598 QLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMA-REKHQASQKENK------QLSLKVDELE 670
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALQSKIQFLEEAMTNAnKEKHFLKEEKNKlsqelsTVATEKNKMA 789
|
490 500 510
....*....|....*....|....*....|...
gi 310750408 671 RKLEATSAQNIEFLQVIAKREEAIHQSQLRLEE 703
Cdd:pfam15921 790 GELEVLRSQERRLKEKVANMEVALDKASLQFAE 822
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
286-785 |
3.42e-10 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 64.09 E-value: 3.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 286 LMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-----SELSKSMESMRGHLQAQLRSKEAEN 360
Cdd:pfam12128 267 YKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAvakdrSELEALEDQHGAFLDADIETAAADQ 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 361 SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADkdlyvaeALST 440
Cdd:pfam12128 347 EQLPSWQSELENLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAED-------DLQA 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 441 LES-WRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQ-TLEEKMR-EDRDSLVER----LHRQTAEYSAFKLENERLKA 513
Cdd:pfam12128 420 LESeLREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATaTPELLLQlENFDERIERareeQEAANAEVERLQSELRQARK 499
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 514 SFAPMEDKLNQAHLEVQQLKASVKNYEGMID----------NYKSQVMKTRLEADEVAAQLERCDkenkiLKDEMNKEIE 583
Cdd:pfam12128 500 RRDQASEALRQASRRLEERQSALDELELQLFpqagtllhflRKEAPDWEQSIGKVISPELLHRTD-----LDPEVWDGSV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 584 AARRQFQSQLADLQQL--PDILKITEAklaecqdqlqgyerknidltaiisdLRSRIEHQGDKLEMAREKHQASQKENKQ 661
Cdd:pfam12128 575 GGELNLYGVKLDLKRIdvPEWAASEEE-------------------------LRERLDKAEEALQSAREKQAAAEEQLVQ 629
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 662 LSLKVDELERKLEatsaqnieflqvIAKReeAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKehalsKERAAQ 741
Cdd:pfam12128 630 ANGELEKASREET------------FART--ALKNARLDLRRLFDEKQSEKDKKNKALAERKDSANERL-----NSLEAQ 690
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 310750408 742 NKILDLETQ--LSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQ 785
Cdd:pfam12128 691 LKQLDKKHQawLEEQKEQKREARTEKQAYWQVVEGALDAQLALLKA 736
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
167-674 |
3.74e-10 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 63.50 E-value: 3.74e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 167 HELAETEHENTVLRHniERMKEEKDFTILQKKhlQQEKECLMSKLVEAEmdgaaaaKQVMALKDTIGKLKTEKQMTCTDI 246
Cdd:TIGR04523 180 KEKLNIQKNIDKIKN--KLLKLELLLSNLKKK--IQKNKSLESQISELK-------KQNNQLKDNIEKKQQEINEKTTEI 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 247 NTLTRQKELLLQklstfeETNRTLRDLLREQHCKEDSERLMEQqgaLLKRLAEADSE-KARLLLLLQDKDKEVEELLQEI 325
Cdd:TIGR04523 249 SNTQTQLNQLKD------EQNKIKKQLSEKQKELEQNNKKIKE---LEKQLNQLKSEiSDLNNQKEQDWNKELKSELKNQ 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 326 QCEKAQAKTasELSKSMESMrghlqaqlrskeaenSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKgdrdKESLKKA 405
Cdd:TIGR04523 320 EKKLEEIQN--QISQNNKII---------------SQLNEQISQLKKELTNSESENSEKQRELEEKQNE----IEKLKKE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 406 IRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLE---EK 482
Cdd:TIGR04523 379 NQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKEliiKN 458
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 483 MREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAA 562
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 563 QLErcDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKnidltaiISDLRSRIEHQG 642
Cdd:TIGR04523 539 KIS--DLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKE-------KKDLIKEIEEKE 609
|
490 500 510
....*....|....*....|....*....|..
gi 310750408 643 DKLEMAREKHQASQKENKQLSLKVDELERKLE 674
Cdd:TIGR04523 610 KKISSLEKELEKAKKENEKLSSIIKNIKSKKN 641
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
553-791 |
1.41e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 553 TRLEA--DEVAAQLERCDKE-------NKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 623
Cdd:COG1196 189 ERLEDilGELERQLEPLERQaekaeryRELKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAE 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 624 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEE 703
Cdd:COG1196 269 LEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 704 KTRECGTLARQLESAiEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRL 783
Cdd:COG1196 349 AEEELEEAEAELAEA-EEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELE 427
|
....*...
gi 310750408 784 EQSESTNR 791
Cdd:COG1196 428 EALAELEE 435
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
221-749 |
1.62e-08 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 58.51 E-value: 1.62e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 221 AAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETnrtlrdLLREQHCKEDSERLMEQQGALLKRLAEA 300
Cdd:PRK02224 197 EEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV------LEEHEERREELETLEAEIEDLRETIAET 270
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 301 DSEKARLLLLLQDKDKEVEELLQEiqcekaqaktaselsksmesmRGHLQAQLRSKEAENSRLCMQIKNLERSgnqhKAE 380
Cdd:PRK02224 271 EREREELAEEVRDLRERLEELEEE---------------------RDDLLAEAGLDDADAEAVEARREELEDR----DEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 381 VEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLH-------VQLADKDLYVAEALSTLESWRSRYNQVVK 453
Cdd:PRK02224 326 LRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELEseleearEAVEDRREEIEELEEEIEELRERFGDAPV 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 454 EKGDLE--LEIIV-----LNDRVTDLVNQQQTLEEKMREDRDSL-----------------VERLHRQTAEYSAFKLENE 509
Cdd:PRK02224 406 DLGNAEdfLEELReerdeLREREAELEATLRTARERVEEAEALLeagkcpecgqpvegsphVETIEEDRERVEELEAELE 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 510 RLKASFAPMEDKLNQA------HLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQlercdkenkilKDEMNKEIE 583
Cdd:PRK02224 486 DLEEEVEEVEERLERAedlveaEDRIERLEERREDLEELIAERRETIEEKRERAEELRER-----------AAELEAEAE 554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 584 AARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNiDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLS 663
Cdd:PRK02224 555 EKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIR-TLLAAIADAEDEIERLREKREALAELNDERRERLAEKR 633
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 664 LKVDELERKLEatsAQNIEFLQviAKREEAiHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEhaLSKERAA-QN 742
Cdd:PRK02224 634 ERKRELEAEFD---EARIEEAR--EDKERA-EEYLEQVEEKLDELREERDDLQAEIGAVENELEELEE--LRERREAlEN 705
|
....*..
gi 310750408 743 KILDLET 749
Cdd:PRK02224 706 RVEALEA 712
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
184-794 |
2.31e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 2.31e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 184 ERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTF 263
Cdd:pfam15921 92 RRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQ 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 264 EETNRTLRdLLREQHCKEDSERLMEQQGALLKRLAEADSekaRLLLLLQDKDKEVEELLQEIQCEkaqaktASELSKSME 343
Cdd:pfam15921 172 IEQLRKMM-LSHEGVLQEIRSILVDFEEASGKKIYEHDS---MSTMHFRSLGSAISKILRELDTE------ISYLKGRIF 241
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 344 SMRGHLQAqLRSKEAENSRLCMQIKN--LERSGNQHKAEVEAIMEQLKELKQKGDrdkeslkkAIRAQKERAEKSEEYAE 421
Cdd:pfam15921 242 PVEDQLEA-LKSESQNKIELLLQQHQdrIEQLISEHEVEITGLTEKASSARSQAN--------SIQSQLEIIQEQARNQN 312
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 422 QLHV-QLADKDLYVAEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEK---MREDRDSLVERLHRQ 497
Cdd:pfam15921 313 SMYMrQLSDLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERDQFSQEsgnLDDQLQKLLADLHKR 389
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 498 TAEYSAFKLENERL-------KASFAPMEDKLNQAHLEVQQLKASVKnyegmidnyksqVMKTRLEAdEVAAQLERCDKE 570
Cdd:pfam15921 390 EKELSLEKEQNKRLwdrdtgnSITIDHLRRELDDRNMEVQRLEALLK------------AMKSECQG-QMERQMAAIQGK 456
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 571 NKILK--DEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMA 648
Cdd:pfam15921 457 NESLEkvSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHL 536
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 649 R---EKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVI--------------AKREEAIHQSQLRLEE----KTRE 707
Cdd:pfam15921 537 KnegDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVgqhgrtagamqvekAQLEKEINDRRLELQEfkilKDKK 616
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 708 CGTLaRQLESAIED-----------------ARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADR 770
Cdd:pfam15921 617 DAKI-RELEARVSDlelekvklvnagserlrAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTN 695
|
650 660
....*....|....*....|....
gi 310750408 771 RYQSRLQDLKDRLEQSESTNRSMQ 794
Cdd:pfam15921 696 KLKMQLKSAQSELEQTRNTLKSME 719
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
467-802 |
3.17e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 3.17e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 467 DRVTDLVN----QQQTLEEKMRedrdsLVERLHRQTAEYSAfkLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 542
Cdd:TIGR02168 189 DRLEDILNelerQLKSLERQAE-----KAERYKELKAELRE--LELALLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 543 IDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNkEIEAARRQFQSQLADLQQlpdilkiteaKLAECQDQLQGYER 622
Cdd:TIGR02168 262 LQELEEKLEELRLEVSELEEEIEELQKELYALANEIS-RLEQQKQILRERLANLER----------QLEELEAQLEELES 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 623 KNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEAtsaqnieflqviAKREEAIHQSQLRLE 702
Cdd:TIGR02168 331 KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET------------LRSKVAQLELQIASL 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 703 EKTREcgtlarQLESAIEDARRQVEQTKEHALSKERAAQ-NKILDLETQLSRTKTELSQLRRSRDDAdrryQSRLQDLKD 781
Cdd:TIGR02168 399 NNEIE------RLEARLERLEDRRERLQQEIEELLKKLEeAELKELQAELEELEEELEELQEELERL----EEALEELRE 468
|
330 340
....*....|....*....|.
gi 310750408 782 RLEQSESTNRSMQNYVQFLKS 802
Cdd:TIGR02168 469 ELEEAEQALDAAERELAQLQA 489
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
557-792 |
1.08e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 1.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 557 ADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 636
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 637 RIEHQGDKL-EMAREKHQASQKENKQLSLKVDELERKLEATSAQNiEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQL 715
Cdd:COG4942 98 ELEAQKEELaELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLK-YLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 310750408 716 ESAIEDARRQVEQtkehaLSKERAAQNKIL-DLETQLSRTKTELSQLRRSrddadrryQSRLQDLKDRLEQSESTNRS 792
Cdd:COG4942 177 EALLAELEEERAA-----LEALKAERQKLLaRLEKELAELAAELAELQQE--------AEELEALIARLEAEAAAAAE 241
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
292-724 |
1.95e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 54.77 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 292 ALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLE 371
Cdd:COG4717 50 RLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLP 129
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 372 --RSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYN 449
Cdd:COG4717 130 lyQELEALEAELAELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLA 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 450 QVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPM----------- 518
Cdd:COG4717 210 ELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllall 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 519 -------EDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVM-KTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQ 590
Cdd:COG4717 290 flllareKASLGKEAEELQALPALEELEEEELEELLAALGlPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELE 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 591 SQLADLQQLPDIlkITEAKLAECQDQLQGYErkniDLTAIISDLRSRIEHQGDKLEMAREKHQAsqkenKQLSLKVDELE 670
Cdd:COG4717 370 QEIAALLAEAGV--EDEEELRAALEQAEEYQ----ELKEELEELEEQLEELLGELEELLEALDE-----EELEEELEELE 438
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 310750408 671 RKLEATSAQNIEFLQVIAKREEAIHQ--SQLRLEEKTRECGTLARQLESAIEDARR 724
Cdd:COG4717 439 EELEELEEELEELREELAELEAELEQleEDGELAELLQELEELKAELRELAEEWAA 494
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
388-683 |
2.02e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.07 E-value: 2.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 388 LKELKQKGDRDKESLKKAIRAQKERAEKSE-EYAEQLH------VQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLEL 460
Cdd:TIGR02169 193 IDEKRQQLERLRREREKAERYQALLKEKREyEGYELLKekealeRQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQ 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 461 EIIVLNDRVTDLV-NQQQTLEEKMREdRDSLVERLHRQTAEYsafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 539
Cdd:TIGR02169 273 LLEELNKKIKDLGeEEQLRVKEKIGE-LEAEIASLERSIAEK---ERELEDAEERLAKLEAEIDKLLAEIEELEREIEEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 540 EGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMN---KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQ 616
Cdd:TIGR02169 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKdyrEKLEKLKREINELKRELDRLQEELQRLSEELADLNAA 428
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 617 LQGYERKNIDLTAIISDLRSRIEHQGDKLEMA--------------REKHQASQKENKQLSLKVDELERKLEATSAQNIE 682
Cdd:TIGR02169 429 IAGIEAKINELEEEKEDKALEIKKQEWKLEQLaadlskyeqelydlKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
.
gi 310750408 683 F 683
Cdd:TIGR02169 509 G 509
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
294-706 |
3.68e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.38 E-value: 3.68e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 294 LKRLAEADSEKARLLLLLQDKDKEVEEL---------LQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLC 364
Cdd:PTZ00121 1396 AKKKAEEDKKKADELKKAAAAKKKADEAkkkaeekkkADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEA 1475
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 365 MQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDK--ESLKKAIRAQK-ERAEKSEEYAEQLHVQLADkDLYVAEALSTL 441
Cdd:PTZ00121 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKkaDEAKKAEEAKKaDEAKKAEEAKKADEAKKAE-EKKKADELKKA 1554
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 442 ESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQqqtLEEKMREDRDSLVERLHRQTAEySAFKLENERLKASfapmedk 521
Cdd:PTZ00121 1555 EELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKK---AEEARIEEVMKLYEEEKKMKAE-EAKKAEEAKIKAE------- 1623
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 522 lnqahlEVQQLKASVKNYEGMIDNYKSQVMKtrleadevAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQqlpD 601
Cdd:PTZ00121 1624 ------ELKKAEEEKKKVEQLKKKEAEEKKK--------AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE---D 1686
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 602 ILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELER-KLEATSAQN 680
Cdd:PTZ00121 1687 EKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKkKIAHLKKEE 1766
|
410 420
....*....|....*....|....*.
gi 310750408 681 IEFLQVIAKREEAIHQSQLRLEEKTR 706
Cdd:PTZ00121 1767 EKKAEEIRKEKEAVIEEELDEEDEKR 1792
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
277-804 |
4.02e-07 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 53.90 E-value: 4.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 277 QHCKEDSERLMEQQgallKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRS- 355
Cdd:TIGR00606 412 QLCADLQSKERLKQ----EQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAEREl 487
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 356 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEE-------YAEQLHVQLA 428
Cdd:TIGR00606 488 SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQirkiksrHSDELTSLLG 567
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 429 DKDlYVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMR------------EDRDSLVERLHR 496
Cdd:TIGR00606 568 YFP-NKKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSsyedklfdvcgsQDEESDLERLKE 646
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 497 Q--------------TAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKN----YEGMIDNYKSQVMKTRLEAD 558
Cdd:TIGR00606 647 EieksskqramlagaTAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSklrlAPDKLKSTESELKKKEKRRD 726
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 559 EVAAQLERcdKENKIlkDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTaIISDLRSRI 638
Cdd:TIGR00606 727 EMLGLAPG--RQSII--DLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVT-IMERFQMEL 801
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 639 EHQGDKLEMAREKHQAS--QKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQsqlrLEEKTRECGTLARQLE 716
Cdd:TIGR00606 802 KDVERKIAQQAAKLQGSdlDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH----LKSKTNELKSEKLQIG 877
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 717 SAIEDARRQVEQTKEhaLSKE--------RAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSES 788
Cdd:TIGR00606 878 TNLQRRQQFEEQLVE--LSTEvqslireiKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHG 955
|
570
....*....|....*.
gi 310750408 789 TNRSMQNYVQFLKSSY 804
Cdd:TIGR00606 956 YMKDIENKIQDGKDDY 971
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
497-738 |
4.20e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 53.23 E-value: 4.20e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKEnkilKD 576
Cdd:COG4942 18 QADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKE----IA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 577 EMNKEIEAARRQFQSQLADLQQLPdilKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQ 656
Cdd:COG4942 94 ELRAELEAQKEELAELLRALYRLG---RQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELE 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 657 KENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSK 736
Cdd:COG4942 171 AERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAA 250
|
..
gi 310750408 737 ER 738
Cdd:COG4942 251 LK 252
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
245-737 |
4.40e-07 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 53.62 E-value: 4.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 245 DINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQqgalLKRLAEADSEKARLLLLLQDKDKEVEELLQE 324
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEK----LLQLLPLYQELEALEAELAELPERLEELEER 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 325 IQCEKAQAKTASELSKSMESMRGHLQAQLR----SKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRdke 400
Cdd:COG4717 155 LEELRELEEELEELEAELAELQEELEELLEqlslATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQ--- 231
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 401 slkkaIRAQKERAEKSEEYAEQLHVQLAdkdlyVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLE 480
Cdd:COG4717 232 -----LENELEAAALEERLKEARLLLLI-----AAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 481 EKMREDRDSLVERlhrqtaeysafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYegmidnyksQVMKTRLEADEV 560
Cdd:COG4717 302 KEAEELQALPALE-----------ELEEEELEELLAALGLPPDLSPEELLELLDRIEEL---------QELLREAEELEE 361
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 561 AAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLpdilkitEAKLAECQDQLQGYERKNIDLTAIIS--DLRSRI 638
Cdd:COG4717 362 ELQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQEL-------KEELEELEEQLEELLGELEELLEALDeeELEEEL 434
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 639 EHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEatsaqnieflqvIAKREEAIHQSQLRLEEKTRECGTLaRQLESA 718
Cdd:COG4717 435 EELEEELEELEEELEELREELAELEAELEQLEEDGE------------LAELLQELEELKAELRELAEEWAAL-KLALEL 501
|
490
....*....|....*....
gi 310750408 719 IEDARRQVEQTKEHALSKE 737
Cdd:COG4717 502 LEEAREEYREERLPPVLER 520
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
263-798 |
5.72e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.38 E-value: 5.72e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 263 FEETNRTLRDLLREQHCKEDSERLMEQQGALLK---RLAEADSEKA-----RLLLLLQDKDKEVEELLQEIQCEKAQAKT 334
Cdd:COG4913 234 FDDLERAHEALEDAREQIELLEPIRELAERYAAareRLAELEYLRAalrlwFAQRRLELLEAELEELRAELARLEAELER 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 335 ASELSKSMESMRGHLQAQLRSKEAEN-SRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERA 413
Cdd:COG4913 314 LEARLDALREELDELEAQIRGNGGDRlEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALL 393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 414 EKSEEYAEQLHVQLADkdlyvaealstlesWRSRYNQVVKEKGDLELEIIVLNDRVT----DLVNQQQTLEEKMREDRDS 489
Cdd:COG4913 394 EALEEELEALEEALAE--------------AEAALRDLRRELRELEAEIASLERRKSnipaRLLALRDALAEALGLDEAE 459
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 490 L-------------------VER-LHRQtaeysAFKL--ENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMidnyk 547
Cdd:COG4913 460 LpfvgelievrpeeerwrgaIERvLGGF-----ALTLlvPPEHYAAALRWVNRLHLRGRLVYERVRTGLPDPERP----- 529
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 548 sqvmktRLEADEVAAQLERcdKENKI---LKDEMNKEIEAAR----RQFQ------------SQLADLQQLPDILKI--- 605
Cdd:COG4913 530 ------RLDPDSLAGKLDF--KPHPFrawLEAELGRRFDYVCvdspEELRrhpraitragqvKGNGTRHEKDDRRRIrsr 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 606 ------TEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAR--EKHQASQKENKQLSLKVDELERKLEATS 677
Cdd:COG4913 602 yvlgfdNRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQrlAEYSWDEIDVASAEREIAELEAELERLD 681
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 678 AQNIEfLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHAlskERAAQNKILDLETQLSRTKTE 757
Cdd:COG4913 682 ASSDD-LAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL---EAAEDLARLELRALLEERFAA 757
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 310750408 758 LSQlRRSRDDADRRYQSRLQDLKDRLEQSEST-NRSMQNYVQ 798
Cdd:COG4913 758 ALG-DAVERELRENLEERIDALRARLNRAEEElERAMRAFNR 798
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
465-784 |
5.89e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 5.89e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 465 LNDRVTDLVNQQQTLEEKMRE---DRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG 541
Cdd:TIGR02169 679 LRERLEGLKRELSSLQSELRRienRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 542 MIDNYKSQVMKTRLEADEVAAQLERC-DKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGY 620
Cdd:TIGR02169 759 ELKELEARIEELEEDLHKLEEALNDLeARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQEL 838
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 621 ERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLR 700
Cdd:TIGR02169 839 QEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 701 LEEKTRECGTLARQLeSAIEDARRQVEQTKEHALSKEraaqnkilDLETQLSRTKTELSQLRRSRDDADRRYQS---RLQ 777
Cdd:TIGR02169 919 LSELKAKLEALEEEL-SEIEDPKGEDEEIPEEELSLE--------DVQAELQRVEEEIRALEPVNMLAIQEYEEvlkRLD 989
|
....*..
gi 310750408 778 DLKDRLE 784
Cdd:TIGR02169 990 ELKEKRA 996
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
260-788 |
9.63e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.76 E-value: 9.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 260 LSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASEL 338
Cdd:PRK03918 157 LDDYENAYKNLGEVIKEiKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEEL 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 339 SKSMESmrghLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQ-KGDRDK-ESLKKAIRAQKERAEKS 416
Cdd:PRK03918 237 KEEIEE----LEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKElKEKAEEyIKLSEFYEEYLDELREI 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 417 EEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHR 496
Cdd:PRK03918 313 EKRLSRLEEEING----IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-----------MIDNYKSQVM-KTRLEADEVAAQL 564
Cdd:PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKakgkcpvcgreLTEEHRKELLeEYTAELKRIEKEL 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 565 ERCDKENKILKDEMnKEIEAARRQfQSQLADLQQLPDILKITEAKLAECQ--------DQLQGYERKNIDLTAIISDLRS 636
Cdd:PRK03918 469 KEIEEKERKLRKEL-RELEKVLKK-ESELIKLKELAEQLKELEEKLKKYNleelekkaEEYEKLKEKLIKLKGEIKSLKK 546
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 637 RIEhqgdKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQ-------SQLRLEEKTRECG 709
Cdd:PRK03918 547 ELE----KLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNeylelkdAEKELEREEKELK 622
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 710 TLARQLESA----------IEDARRQVEQ-TKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADrryqSRLQD 778
Cdd:PRK03918 623 KLEEELDKAfeelaetekrLEELRKELEElEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK----KTLEK 698
|
570
....*....|
gi 310750408 779 LKDRLEQSES 788
Cdd:PRK03918 699 LKEELEEREK 708
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
385-799 |
1.30e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.08 E-value: 1.30e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 385 MEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAE-QLHVQLADKDLyvaEALSTLESWRSRYnqvvKEKGDLELEII 463
Cdd:COG4717 70 LKELKELEEELKEAEEKEEEYAELQEELEELEEELEElEAELEELREEL---EKLEKLLQLLPLY----QELEALEAELA 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 464 VLNDRVTDLVNQQQTLEEKMREdrdslVERLHRQTAEYSAfKLENERLKASFApMEDKLNQAHLEVQQLKASVKNYEGMI 543
Cdd:COG4717 143 ELPERLEELEERLEELRELEEE-----LEELEAELAELQE-ELEELLEQLSLA-TEEELQDLAEELEELQQRLAELEEEL 215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 544 DNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADL--------------------------- 596
Cdd:COG4717 216 EEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLlsliltiagvlflvlgllallflllar 295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 597 QQLPDILKITEAKLAECQDQLQGYERKNI--DLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERK-- 672
Cdd:COG4717 296 EKASLGKEAEELQALPALEELEEEELEELlaALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAal 375
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 673 LEATSAQNIEFLQVIAKREEaihqsqlRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALskeraaQNKILDLETQLS 752
Cdd:COG4717 376 LAEAGVEDEEELRAALEQAE-------EYQELKEELEELEEQLEELLGELEELLEALDEEEL------EEELEELEEELE 442
|
410 420 430 440
....*....|....*....|....*....|....*....|....*..
gi 310750408 753 RTKTELSQLrrsrddadrryQSRLQDLKDRLEQSESTNRSMQNYVQF 799
Cdd:COG4717 443 ELEEELEEL-----------REELAELEAELEQLEEDGELAELLQEL 478
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
314-637 |
1.73e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.99 E-value: 1.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 314 KDKEVEELLQEIQCEKAQAKtASELSKSMESMRghlqAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL-- 391
Cdd:TIGR02169 205 REREKAERYQALLKEKREYE-GYELLKEKEALE----RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELnk 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 392 --KQKGDRDKESLKKAIR---AQKERAEKS----EEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEI 462
Cdd:TIGR02169 280 kiKDLGEEEQLRVKEKIGeleAEIASLERSiaekERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 463 IVLNDRVTDLVNQQQTLEEKMREDRDSLVERlhrqTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGM 542
Cdd:TIGR02169 360 AELKEELEDLRAELEEVDKEFAETRDELKDY----REKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 543 IdnyksqvmkTRLEADevaaqlercdkenkilKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYER 622
Cdd:TIGR02169 436 I---------NELEEE----------------KEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
330
....*....|....*
gi 310750408 623 KNIDLTAIISDLRSR 637
Cdd:TIGR02169 491 ELAEAEAQARASEER 505
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
219-777 |
3.33e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 3.33e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 219 AAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQhckEDSERLMEQQGALLKRLA 298
Cdd:TIGR00618 296 AAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQE---IHIRDAHEVATSIREISC 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 299 EADSEKARLLLLLQDK--DKEVEELL-QEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQ---IKNLER 372
Cdd:TIGR00618 373 QQHTLTQHIHTLQQQKttLTQKLQSLcKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCaaaITCTAQ 452
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 373 SGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQ--------LHVQLADKDLYVAEALStlesw 444
Cdd:TIGR00618 453 CEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcplcgscIHPNPARQDIDNPGPLT----- 527
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 445 rSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDS---LVERLHRQTAEYSAFKLENERLKaSFAPMEDK 521
Cdd:TIGR00618 528 -RRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSfsiLTQCDNRSKEDIPNLQNITVRLQ-DLTEKLSE 605
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 522 L-------NQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRqfQSQLA 594
Cdd:TIGR00618 606 AedmlaceQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASR--QLALQ 683
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 595 DLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKE-NKQLSLKVDELERKL 673
Cdd:TIGR00618 684 KMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKElMHQARTVLKARTEAH 763
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 674 EATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLArQLESAIEDARRQVEQTKE---HALSKERAA-QNKILDLET 749
Cdd:TIGR00618 764 FNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK-TLEAEIGQEIPSDEDILNlqcETLVQEEEQfLSRLEEKSA 842
|
570 580
....*....|....*....|....*...
gi 310750408 750 QLSRTKTELSQLRRSRDDADRRYQSRLQ 777
Cdd:TIGR00618 843 TLGEITHQLLKYEECSKQLAQLTQEQAK 870
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
349-738 |
5.59e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.02 E-value: 5.59e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 349 LQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKE----------------- 411
Cdd:TIGR04523 216 LESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQnnkkikelekqlnqlks 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 412 -----RAEKSEEYAEQLHVQLADKDlyvaEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEKMREd 486
Cdd:TIGR04523 296 eisdlNNQKEQDWNKELKSELKNQE----KKLEEIQNQISQNNKIISQ---LNEQISQLKKELTNSESENSEKQRELEE- 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 487 RDSLVERLHRQTAEYsafKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY-------EGMIDNYKSQVMKTRLEADE 559
Cdd:TIGR04523 368 KQNEIEKLKKENQSY---KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLqqekellEKEIERLKETIIKNNSEIKD 444
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 560 VA---AQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRS 636
Cdd:TIGR04523 445 LTnqdSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKE 524
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 637 RIEhqgdklEMAREKhqaSQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLE 716
Cdd:TIGR04523 525 KIE------KLESEK---KEKESKISDLEDELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKE 595
|
410 420
....*....|....*....|..
gi 310750408 717 SAIEDARRQVEQTKEHALSKER 738
Cdd:TIGR04523 596 KEKKDLIKEIEEKEKKISSLEK 617
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
543-806 |
1.05e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 1.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 543 IDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNK---EIEAARR--QFQSQLADLQQ--LPDILKITEAKLAECQD 615
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERlrrEREKAERyqALLKEKREYEGyeLLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 616 QLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQA-SQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAI 694
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDlGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 695 HQSQLRLEEKTREcgtlARQLESAIEDARRQVEQTKEHALSKE---RAAQNKILDLETQLSRTKTELSQlrrsrddadrr 771
Cdd:TIGR02169 325 AKLEAEIDKLLAE----IEELEREIEEERKRRDKLTEEYAELKeelEDLRAELEEVDKEFAETRDELKD----------- 389
|
250 260 270
....*....|....*....|....*....|....*
gi 310750408 772 YQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYAN 806
Cdd:TIGR02169 390 YREKLEKLKREINELKRELDRLQEELQRLSEELAD 424
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
238-783 |
1.17e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.18 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 238 EKQMTCTDINTLTRQKELLLQKLStfEETNRTLRDLLREQHCK-EDSERLMEQQGALLKRLAEADSEKARLLLLLqdkdK 316
Cdd:COG3096 240 ENRMTLEAIRVTQSDRDLFKHLIT--EATNYVAADYMRHANERrELSERALELRRELFGARRQLAEEQYRLVEMA----R 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 317 EVEELlqeiqcekaqAKTASELSKSMESMRGHL---QAQLRSKEAensrlcmqiknLERsgnqHKAEVEAIMEQLKElkQ 393
Cdd:COG3096 314 ELEEL----------SARESDLEQDYQAASDHLnlvQTALRQQEK-----------IER----YQEDLEELTERLEE--Q 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 394 KGDRdKESLKKAIRAQkERAEKSEEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVKEKGDL-------ELEIIVLN 466
Cdd:COG3096 367 EEVV-EEAAEQLAEAE-ARLEAAEEEVDSLKSQLAD----YQQALDVQQTRAIQYQQAVQALEKAralcglpDLTPENAE 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 467 DRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlkasfapmedklnqahleVQQLKASVknyegmid 544
Cdd:COG3096 441 DYLAAFRAKEQQATEEVLelEQKLSVADAARRQFEK--AYEL----------------------VCKIAGEV-------- 488
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 545 nyksqvmkTRLEADEVAAQLERCDKENKILkdemnkeieAARR-QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 623
Cdd:COG3096 489 --------ERSQAWQTARELLRRYRSQQAL---------AQRLqQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA 551
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 624 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELerkleatsaqnieflqviAKREEAIHQSQLRLEe 703
Cdd:COG3096 552 AEELEELLAELEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKEL------------------AARAPAWLAAQDALE- 612
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 704 ktrecgTLARQLESAIEDArRQVEQTKEHALSKERAAQNkildLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRL 783
Cdd:COG3096 613 ------RLREQSGEALADS-QEVTAAMQQLLEREREATV----ERDELAARKQALESQIERLSQPGGAEDPRLLALAERL 681
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
561-758 |
3.33e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.45 E-value: 3.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 561 AAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKnidltaiisdlRSRIEH 640
Cdd:COG4717 55 ADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREE-----------LEKLEK 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 641 QGDKLEMAREKHQAsQKENKQLSLKVDELERKLEATSaqniEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIE 720
Cdd:COG4717 124 LLQLLPLYQELEAL-EAELAELPERLEELEERLEELR----ELEEELEELEAELAELQEELEELLEQLSLATEEELQDLA 198
|
170 180 190
....*....|....*....|....*....|....*...
gi 310750408 721 DARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTEL 758
Cdd:COG4717 199 EELEELQQRLAELEEELEEAQEELEELEEELEQLENEL 236
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
513-741 |
6.16e-05 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.36 E-value: 6.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 513 ASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILK---DEMNKEIEAARRQF 589
Cdd:COG3883 9 PTPAFADPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQaeiAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 590 QSQLADLQQLPDILKITEAKLAecQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDEL 669
Cdd:COG3883 89 GERARALYRSGGSVSYLDVLLG--SESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAEL 166
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 310750408 670 ERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQ 741
Cdd:COG3883 167 EAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 238
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
162-802 |
6.77e-05 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 46.89 E-value: 6.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 162 LEEVAHELAE-----TEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEmdgaaaakqvMALKDTIGKLK 236
Cdd:pfam02463 178 LIEETENLAEliidlEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNE----------ERIDLLQELLR 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 237 TEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDK 316
Cdd:pfam02463 248 DEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKKKAE 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 317 EVEELLQEIQCEKAQAKTASELSKSM--ESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQK 394
Cdd:pfam02463 328 KELKKEKEEIEELEKELKELEIKREAeeEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEA 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 395 GDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLAD--KDLYVAEALSTLESWRSRYNQVVKEKGDLELEIivlndrvtdl 472
Cdd:pfam02463 408 QLLLELARQLEDLLKEEKKEELEILEEEEESIELKqgKLTEEKEELEKQELKLLKDELELKKSEDLLKET---------- 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 473 VNQQQTLEEKMREDRDSLVERLHRQTAeysafklENERLKASFAPMEDKLNQAHLEVQQLKasvKNYEGMIDNYKSQVMK 552
Cdd:pfam02463 478 QLVKLQEQLELLLSRQKLEERSQKESK-------ARSGLKVLLALIKDGVGGRIISAHGRL---GDLGVAVENYKVAIST 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 553 TRLEADEVAAQLERCDKENKILKDEMNkeIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTA--- 629
Cdd:pfam02463 548 AVIVEVSATADEVEERQKLVRALTELP--LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAkvv 625
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 630 -IISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTREC 708
Cdd:pfam02463 626 eGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKE 705
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 709 GTLARQLESAIEDARRQVEQTKEhalSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSES 788
Cdd:pfam02463 706 QREKEELKKLKLEAEELLADRVQ---EAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREK 782
|
650
....*....|....
gi 310750408 789 TNRSMQNYVQFLKS 802
Cdd:pfam02463 783 TEKLKVEEEKEEKL 796
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
312-503 |
7.05e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.91 E-value: 7.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 312 QDKDKEVEELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKEL 391
Cdd:COG4942 19 ADAAAEAEAELEQLQ---QEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 392 KQKGDRDKESLKKAIRAQKERAEKSE-------EYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIV 464
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPlalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAE 175
|
170 180 190
....*....|....*....|....*....|....*....
gi 310750408 465 LNDRVTDLVNQQQTLEEKMREdRDSLVERLHRQTAEYSA 503
Cdd:COG4942 176 LEALLAELEEERAALEALKAE-RQKLLARLEKELAELAA 213
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
366-617 |
8.93e-05 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 46.20 E-value: 8.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 366 QIKNLERSGNQHKAE-VEAIMEQLKELkqkgDRDKESLKKAIRAQK---ERAEKSEEYAEQLhVQLADKDLYVAEALSTl 441
Cdd:PRK10929 31 ELEQAKAAKTPAQAEiVEALQSALNWL----EERKGSLERAKQYQQvidNFPKLSAELRQQL-NNERDEPRSVPPNMST- 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 442 eswrsrynqvvkekGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPmEDK 521
Cdd:PRK10929 105 --------------DALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTP-NTP 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 522 LNQAHL-----EVQQLKASVKNYE--GMIDNYKSQVmkTRLEADEVAAQLERCDKENKILKDEMNkeieaARRQFQSQLA 594
Cdd:PRK10929 170 LAQAQLtalqaESAALKALVDELElaQLSANNRQEL--ARLRSELAKKRSQQLDAYLQALRNQLN-----SQRQREAERA 242
|
250 260
....*....|....*....|...
gi 310750408 595 dlqqlpdiLKITEaKLAECQDQL 617
Cdd:PRK10929 243 --------LESTE-LLAEQSGDL 256
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
637-792 |
9.30e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 9.30e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 637 RIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQnieflqvIAKREEAIHQSQLRLEEKTRECGTLARQLE 716
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLE-------LEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 310750408 717 SAIEDaRRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRS 792
Cdd:COG1196 306 RLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEE 380
|
|
| Crescentin |
pfam19220 |
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament ... |
507-761 |
1.17e-04 |
|
Crescentin protein; This entry represents a bacterial equivalent to Intermediate Filament proteins, named crescentin, whose cytoskeletal function is required for the vibrioid and helical shapes of Caulobacter crescentus. Without crescentin, the cells adopt a straight-rod morphology. Crescentin has characteriztic features of IF proteins including the ability to assemble into filaments in vitro without energy or cofactor requirements. In vivo, crescentin forms a helical structure that colocalizes with the inner cell curvatures beneath the cytoplasmic membrane.
Pssm-ID: 437057 [Multi-domain] Cd Length: 401 Bit Score: 45.44 E-value: 1.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 507 ENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENkilkdemnkeiEAAR 586
Cdd:pfam19220 4 RNELLRVRLGEMADRLE----DLRSLKADFSQLIEPIEAILRELPQAKSRLLELEALLAQERAAY-----------GKLR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 587 RQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKV 666
Cdd:pfam19220 69 RELAGLTRRLSAAEGELEELVARLAKLEAALREAEAAKEELRIELRDKTAQAEALERQLAAETEQNRALEEENKALREEA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 667 DELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLAR---QLESAIEDARRQVEQTkEHALSKERAAQNK 743
Cdd:pfam19220 149 QAAEKALQRAEGELATARERLALLEQENRRLQALSEEQAAELAELTRrlaELETQLDATRARLRAL-EGQLAAEQAERER 227
|
250
....*....|....*....
gi 310750408 744 IL-DLETQLSRTKTELSQL 761
Cdd:pfam19220 228 AEaQLEEAVEAHRAERASL 246
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
465-793 |
1.24e-04 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 44.91 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 465 LNDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAE----YSAFKLENERLKASF-------APMEDKLNQAHLEVQQLK 533
Cdd:pfam00038 9 LNDRLASYIDKVRFLEQQNKLLETKISELRQKKGAEpsrlYSLYEKEIEDLRRQLdtltverARLQLELDNLRLAAEDFR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 534 ASVKNYEGMIDNYKSQVMKTRLEADEvaAQLERCDKENKIlkDEMNKEIEAARRQFQSQLADLQqlpdilkiteAKLAEC 613
Cdd:pfam00038 89 QKYEDELNLRTSAENDLVGLRKDLDE--ATLARVDLEAKI--ESLKEELAFLKKNHEEEVRELQ----------AQVSDT 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 614 QDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENkqlslkvdelerkLEATSAQNIEFLQviAKREEa 693
Cdd:pfam00038 155 QVNVEMDAARKLDLTSALAEIRAQYEEIAAKNREEAEEWYQSKLEE-------------LQQAAARNGDALR--SAKEE- 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 694 IHQSQLRLEEKTRECGTLARQLESaIEDARRQVEQTKEHALSKeraAQNKILDLETQLSRTKTELSQLrrsrddaDRRYQ 773
Cdd:pfam00038 219 ITELRRTIQSLEIELQSLKKQKAS-LERQLAETEERYELQLAD---YQELISELEAELQETRQEMARQ-------LREYQ 287
|
330 340
....*....|....*....|
gi 310750408 774 SrLQDLKDRLEQSESTNRSM 793
Cdd:pfam00038 288 E-LLNVKLALDIEIATYRKL 306
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
131-627 |
1.25e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.88 E-value: 1.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 131 MNAVGCLKSEVKMQKGERQMAKRFLEERkeeleevaheLAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSK 210
Cdd:pfam15921 316 MRQLSDLESTVSQLRSELREAKRMYEDK----------IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLAD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 211 LVEAEMDGAAAAKQVMALKD-------TIGKLKTEkqmtCTDINTLTRQKELLLQKLSTfeetnrtlrdllreqHCKEDS 283
Cdd:pfam15921 386 LHKREKELSLEKEQNKRLWDrdtgnsiTIDHLRRE----LDDRNMEVQRLEALLKAMKS---------------ECQGQM 446
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 284 ERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRL 363
Cdd:pfam15921 447 ERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 364 CMQIKNLERSGNQ--HKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYA-------EQLHVQLADKDLYV 434
Cdd:pfam15921 527 DLKLQELQHLKNEgdHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAgamqvekAQLEKEINDRRLEL 606
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 435 AEALSTLESWRSRYNQVVKEKGDLELEIIVL----NDRVTDLVNQQQTLEEKMREDRDSLVErLHRQTAEYSA----FKL 506
Cdd:pfam15921 607 QEFKILKDKKDAKIRELEARVSDLELEKVKLvnagSERLRAVKDIKQERDQLLNEVKTSRNE-LNSLSEDYEVlkrnFRN 685
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 507 ENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG-------MIDNYKSQVMKTRLEADEVAAQLE-------RCDKENK 572
Cdd:pfam15921 686 KSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGsdghamkVAMGMQKQITAKRGQIDALQSKIQfleeamtNANKEKH 765
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 310750408 573 ILKDEMNK-----------------EIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDL 627
Cdd:pfam15921 766 FLKEEKNKlsqelstvateknkmagELEVLRSQERRLKEKVANMEVALDKASLQFAECQDIIQRQEQESVRL 837
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
484-787 |
1.67e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 484 REDRDSLVERLHRQTAEysafKLENERLKAsfapmedklnqahLEVQQLKASVKNYEGMIDNYKSQVMKTRLEA-DEVAA 562
Cdd:TIGR02169 185 NIERLDLIIDEKRQQLE----RLRREREKA-------------ERYQALLKEKREYEGYELLKEKEALERQKEAiERQLA 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 563 QLERCDKENKILKDEMNKEIEAARrqfqsqladlQQLPDILKITEAKLAECQDQLQgyeRKNIDLTAIISDLRSRIEHQG 642
Cdd:TIGR02169 248 SLEEELEKLTEEISELEKRLEEIE----------QLLEELNKKIKDLGEEEQLRVK---EKIGELEAEIASLERSIAEKE 314
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 643 DKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLesaiEDA 722
Cdd:TIGR02169 315 RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDEL----KDY 390
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 310750408 723 RRQVEQTKEHALSKERaAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSE 787
Cdd:TIGR02169 391 REKLEKLKREINELKR-ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE 454
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
161-757 |
1.77e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 45.44 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 161 ELEEVAHELAETEHENTVLRHNIERMKEEKdftilqkkhlqQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQ 240
Cdd:PRK03918 201 ELEEVLREINEISSELPELREELEKLEKEV-----------KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIE 269
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 241 MTCTDINTLtRQKELLLQKLSTFEETNRTLRDLLRE-----QHCKEDSERLMEQQGALLKRLAEADSEKARLllllqdkd 315
Cdd:PRK03918 270 ELKKEIEEL-EEKVKELKELKEKAEEYIKLSEFYEEyldelREIEKRLSRLEEEINGIEERIKELEEKEERL-------- 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 316 KEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQaQLRSKEAENS--RLCMQIKNLERSGNQHKAEVEAIMEQLKELKQ 393
Cdd:PRK03918 341 EELKKKLKELEKRLEELEERHELYEEAKAKKEELE-RLKKRLTGLTpeKLEKELEELEKAKEEIEEEISKITARIGELKK 419
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 394 KgdrdKESLKKAIRAQKE--------RAEKSEEYAEQLhvqLADKDLYVAEALSTLESWRSRYNQVVKEKGDLELEIIVL 465
Cdd:PRK03918 420 E----IKELKKAIEELKKakgkcpvcGRELTEEHRKEL---LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKE 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 466 ND--RVTDLVNQQQTLEEKMREDRdslVERLHRQTAEYSAFKLENERLKASFAPMEDKLNqahlEVQQLKASVKNYEGMI 543
Cdd:PRK03918 493 SEliKLKELAEQLKELEEKLKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSLKKELE----KLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 544 DNYKSqvmktrlEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSqladLQQLPDILKITEAKLAECQDQLQGYERK 623
Cdd:PRK03918 566 DELEE-------ELAELLKELEELGFESVEELEERLKELEPFYNEYLE----LKDAEKELEREEKELKKLEEELDKAFEE 634
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 624 NIDLTAIISDLRSRIEHQG-----DKLEMAREKHQASQKENKQLSLKVDELERKLEaTSAQNIEFLQviaKREEAIHQSQ 698
Cdd:PRK03918 635 LAETEKRLEELRKELEELEkkyseEEYEELREEYLELSRELAGLRAELEELEKRRE-EIKKTLEKLK---EELEEREKAK 710
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|....*....
gi 310750408 699 LRLEektrecgtlarQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTE 757
Cdd:PRK03918 711 KELE-----------KLEKALERVEELREKVKKYKALLKERALSKVGEIASEIFEELTE 758
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
238-783 |
1.81e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 45.33 E-value: 1.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 238 EKQMTCTDINTlTRQKELLLQKLSTfEETNRTLRDLLREQhckedSERLMEQQGALLKRLAEADSEKARLLLllqdkdke 317
Cdd:PRK04863 241 ENRMTLEAIRV-TQSDRDLFKHLIT-ESTNYVAADYMRHA-----NERRVHLEEALELRRELYTSRRQLAAE-------- 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 318 vEELLQEIQCE-KAQAKTASELSKSMESMRGHL---QAQLRSKEAENsrlcmqiknlersgnQHKAEVEAIMEQLKELKQ 393
Cdd:PRK04863 306 -QYRLVEMARElAELNEAESDLEQDYQAASDHLnlvQTALRQQEKIE---------------RYQADLEELEERLEEQNE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 394 KgdrDKESLKKAIRAQkERAEKSEEYAEQLHVQLADkdlyVAEALSTLESWRSRYNQVVK--EK-----GDLELEIIVLN 466
Cdd:PRK04863 370 V---VEEADEQQEENE-ARAEAAEEEVDELKSQLAD----YQQALDVQQTRAIQYQQAVQalERakqlcGLPDLTADNAE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 467 DRVTDLVNQQQTLEEKMR--EDRDSLVERLHRQTAEysAFKLenerlkasfapmedklnqahleVQQLKASVknyegmid 544
Cdd:PRK04863 442 DWLEEFQAKEQEATEELLslEQKLSVAQAAHSQFEQ--AYQL----------------------VRKIAGEV-------- 489
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 545 nyksqvmkTRLEADEVAAQLERCDKENKILkdemnkeieAARR-QFQSQLADLQQLPDILKITEAKLAECQDQLQGYERK 623
Cdd:PRK04863 490 --------SRSEAWDVARELLRRLREQRHL---------AEQLqQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDD 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 624 NIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELErkleatsaqnieflqviaKREEAIHQSQLRLEE 703
Cdd:PRK04863 553 EDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLA------------------ARAPAWLAAQDALAR 614
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 704 ktrecgtLARQLESAIEDArRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQLRRSRDDADrryqSRLQDLKDRL 783
Cdd:PRK04863 615 -------LREQSGEEFEDS-QDVTEYMQQLLERERELTVERDELAARKQALDEEIERLSQPGGSED----PRLNALAERF 682
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
166-416 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 166 AHELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTD 245
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 246 INTLTRQKELLLQKLSTFEETNRtLRDLLREQHCKEDSERLMeqqgaLLKRLAEADSEKArlllllqdkdkevEELlqei 325
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPP-LALLLSPEDFLDAVRRLQ-----YLKYLAPARREQA-------------EEL---- 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 326 qceKAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKA 405
Cdd:COG4942 156 ---RADLAELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
250
....*....|.
gi 310750408 406 IRAQKERAEKS 416
Cdd:COG4942 233 EAEAAAAAERT 243
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
579-802 |
3.44e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 3.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 579 NKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIehqgdklemarekhQASQKE 658
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQEL--------------AALEAE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 659 NKQLSLKVDELERKLEATSAQNIEFLQVIAKREEaihQSQLRLEEKTRECGTLARQLE--SAIEDARRQVEQTKEHALSK 736
Cdd:COG4942 85 LAELEKEIAELRAELEAQKEELAELLRALYRLGR---QPPLALLLSPEDFLDAVRRLQylKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 310750408 737 ERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKS 802
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEA 227
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
470-761 |
4.13e-04 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 43.79 E-value: 4.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 470 TDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERlkASFAPMEDKLNQAHLEVQQLKASVKNYEGMID----- 544
Cdd:COG5185 234 ALKGFQDPESELEDLAQTSDKLEKLVEQNTDLRLEKLGENA--ESSKRLNENANNLIKQFENTKEKIAEYTKSIDikkat 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 545 NYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKIT--EAKLAECQDQLqgyER 622
Cdd:COG5185 312 ESLEEQLAAAEAEQELEESKRETETGIQNLTAEIEQGQESLTENLEAIKEEIENIVGEVELSksSEELDSFKDTI---ES 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 623 KNIDLTAIISDLRSRIEhqgDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQNIEFLQVIAKRE-EAIHQSQLRL 701
Cdd:COG5185 389 TKESLDEIPQNQRGYAQ---EILATLEDTLKAADRQIEELQRQIEQATSSNEEVSKLLNELISELNKVMrEADEESQSRL 465
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 702 EEKTREcgtLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQL 761
Cdd:COG5185 466 EEAYDE---INRSVRSKKEDLNEELTQIESRVSTLKATLEKLRAKLERQLEGVRSKLDQV 522
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
276-778 |
4.67e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 43.94 E-value: 4.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 276 EQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASE----LSKSMESMRGHLQA 351
Cdd:pfam05483 228 EEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEkkdhLTKELEDIKMSLQR 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 352 QLRSKEAENSRLCMQIKNLersgNQHKAEVEAIMEQLKELK-------QKGDRDKESLKKAIRAQKERAEKSEEYAEQLH 424
Cdd:pfam05483 308 SMSTQKALEEDLQIATKTI----CQLTEEKEAQMEELNKAKaahsfvvTEFEATTCSLEELLRTEQQRLEKNEDQLKIIT 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 425 VQLADKDLYVAE----------ALSTLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLV--- 491
Cdd:pfam05483 384 MELQKKSSELEEmtkfknnkevELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTaik 463
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 492 --ERLHRQTAEYSAFKLENERLKASfaPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDK 569
Cdd:pfam05483 464 tsEEHYLKEVEDLKTELEKEKLKNI--ELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 570 ENKILKDEMnkeiEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAR 649
Cdd:pfam05483 542 KEMNLRDEL----ESVREEFIQKGDEVKCK---LDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELH 614
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 650 EKHQASQK----ENKQLS---LKVDELERKLEATSaqnieflqviAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDA 722
Cdd:pfam05483 615 QENKALKKkgsaENKQLNayeIKVNKLELELASAK----------QKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIA 684
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 310750408 723 RRQVEQTKEhalsKERAAQNKILDLETQLSRTKTELSQLRRSRDDADRRYQSRLQD 778
Cdd:pfam05483 685 DEAVKLQKE----IDKRCQHKIAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQE 736
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
581-746 |
6.75e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.22 E-value: 6.75e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 581 EIEAARRQFQSQLADLQQLpdiLKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMARekhqaSQKENK 660
Cdd:COG1579 21 RLEHRLKELPAELAELEDE---LAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQLGNVR-----NNKEYE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 661 QLSLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQtkehaLSKERAA 740
Cdd:COG1579 93 ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEE-----LEAEREE 167
|
....*.
gi 310750408 741 QNKILD 746
Cdd:COG1579 168 LAAKIP 173
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
590-789 |
7.67e-04 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 42.96 E-value: 7.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 590 QSQLAD-LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDE 668
Cdd:pfam07888 33 QNRLEEcLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEE 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 669 LERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTREcgtlarqLESAIEDARRQVEQTKEHAlSKERAAQNKILDLE 748
Cdd:pfam07888 113 LSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETE-------LERMKERAKKAGAQRKEEE-AERKQLQAKLQQTE 184
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 310750408 749 TQLSRTKTELSQLRRSRDDADRRYQsRLQDLKDRLEQSEST 789
Cdd:pfam07888 185 EELRSLSKEFQELRNSLAQRDTQVL-QLQDTITTLTQKLTT 224
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
379-689 |
8.35e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 43.12 E-value: 8.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 379 AEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQL---HVQLADKDLYVAE-ALSTLESWR--SRYNQVV 452
Cdd:TIGR01612 540 KEIEAGLKESYELAKNWKKLIHEIKKELEEENEDSIHLEKEIKDLfdkYLEIDDEIIYINKlKLELKEKIKniSDKNEYI 619
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 453 KEKGDLElEIIVLND------------RVTDLVNQQQT--------LEEKMREDRDSLVERLHRQTAEYSafkLENERLK 512
Cdd:TIGR01612 620 KKAIDLK-KIIENNNayidelakispyQVPEHLKNKDKiystikseLSKIYEDDIDALYNELSSIVKENA---IDNTEDK 695
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 513 ASFAPMEDKLNQAHLEVQQLK-ASVKNYEGMIDNYKSQVMKTRLEADEVAAQlERCDKENKILKDEMNKEieaarRQFQS 591
Cdd:TIGR01612 696 AKLDDLKSKIDKEYDKIQNMEtATVELHLSNIENKKNELLDIIVEIKKHIHG-EINKDLNKILEDFKNKE-----KELSN 769
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 592 QLADLQQLPDILKITEAKLAECQDQLQgyERKNIDLTaiisdlrsriehqgdKLEMAREKHQASQKENKQLSLKVDELER 671
Cdd:TIGR01612 770 KINDYAKEKDELNKYKSKISEIKNHYN--DQINIDNI---------------KDEDAKQNYDKSKEYIKTISIKEDEIFK 832
|
330
....*....|....*...
gi 310750408 672 KLEATSAQNIEFLQVIAK 689
Cdd:TIGR01612 833 IINEMKFMKDDFLNKVDK 850
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
281-743 |
8.96e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 281 EDSERLMEQQGALLKRLAEA-----DSEKARLLLLLQDKDKeVEELLQEIQCEKAQAKTASELSKSMESMRghlQAQLRS 355
Cdd:PTZ00121 1161 EDARKAEEARKAEDAKKAEAarkaeEVRKAEELRKAEDARK-AEAARKAEEERKAEEARKAEDAKKAEAVK---KAEEAK 1236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 356 KEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAiraqkERAEKSEEYAEQLHVQLADKDLYVA 435
Cdd:PTZ00121 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKA-----EEKKKADEAKKAEEKKKADEAKKKA 1311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 436 EALSTLESWRSRYNQVVKEKGDLeleiivlndrvtdlvnQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASF 515
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAA----------------KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE 1375
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 516 APME-DKLNQAHLEVQQLKASVKNYEGmiDNYKSQVMKTRLEADEVAAQLERcDKENKILKDEMNKEIEAARR--QFQSQ 592
Cdd:PTZ00121 1376 AKKKaDAAKKKAEEKKKADEAKKKAEE--DKKKADELKKAAAAKKKADEAKK-KAEEKKKADEAKKKAEEAKKadEAKKK 1452
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 593 LADLQQLPDILKITE--------AKLAECQDQLQGYERKNIDLTAIISDLRSRIE--HQGDKLEMAREKHQASQKENKQL 662
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEeakkadeaKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEakKKADEAKKAEEAKKADEAKKAEE 1532
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 663 SLKVDELERKLEATSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQN 742
Cdd:PTZ00121 1533 AKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEA 1612
|
.
gi 310750408 743 K 743
Cdd:PTZ00121 1613 K 1613
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
119-418 |
9.43e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 9.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 119 KMNRYDKKIDSLMNAVGCLKSEVKMQKGERqmAKRFLEERKEELEEVAHEL--AETEHENTVLRHNIERMKEEKDFTILQ 196
Cdd:PTZ00121 1491 KAEEAKKKADEAKKAAEAKKKADEAKKAEE--AKKADEAKKAEEAKKADEAkkAEEKKKADELKKAEELKKAEEKKKAEE 1568
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 197 KKHLQQEKECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDintlTRQKELLLQKLSTFEETNRTLRDLLRE 276
Cdd:PTZ00121 1569 AKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE----AKIKAEELKKAEEEKKKVEQLKKKEAE 1644
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 277 QHCKEDSERLMEQQGAL----LKRLAEADSEKARLLLLLQDKDKEVEELLQEiqcEKAQAKTASELSKSMESMRGHLQaQ 352
Cdd:PTZ00121 1645 EKKKAEELKKAEEENKIkaaeEAKKAEEDKKKAEEAKKAEEDEKKAAEALKK---EAEEAKKAEELKKKEAEEKKKAE-E 1720
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 310750408 353 LRSKEAENSrlcMQIKNLERSGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEE 418
Cdd:PTZ00121 1721 LKKAEEENK---IKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
462-663 |
1.14e-03 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 42.31 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 462 IIVLNDRVTDLVNQQQTLEEKMREDRDsLVERLHRQTAEysafklENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEG 541
Cdd:PHA02562 176 IRELNQQIQTLDMKIDHIQQQIKTYNK-NIEEQRKKNGE------NIARKQNKYDELVEEAKTIKAEIEELTDELLNLVM 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 542 MIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDemNKEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYE 621
Cdd:PHA02562 249 DIEDPSAALNKLNTAAAKIKSKIEQFQKVIKMYEK--GGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELE 326
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 310750408 622 RKNIDLTAI---ISDLRSRIEHQGDKLEMAREKHQASQKENKQLS 663
Cdd:PHA02562 327 EIMDEFNEQskkLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
579-800 |
1.21e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.31 E-value: 1.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 579 NKEIEAARRQFQSQLADLQQlpdilkiteaKLAECQDQLQGYERKN--IDLTAIISDLRSRIEHQGDKLEMAREKHQASQ 656
Cdd:COG3206 170 REEARKALEFLEEQLPELRK----------ELEEAEAALEEFRQKNglVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 657 KenkqlslKVDELERKLEATSAQNIEFLQ--VIAKREEAIHQSQLRLEEKTRECG--------------TLARQLESAIE 720
Cdd:COG3206 240 A-------RLAALRAQLGSGPDALPELLQspVIQQLRAQLAELEAELAELSARYTpnhpdvialraqiaALRAQLQQEAQ 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 721 DARRQVEQTKEHALSKERAAQNKILDLETQ---LSRTKTELSQLRRSRDDADRRYQSrlqdLKDRLEQSESTNRSMQNYV 797
Cdd:COG3206 313 RILASLEAELEALQAREASLQAQLAQLEARlaeLPELEAELRRLEREVEVARELYES----LLQRLEEARLAEALTVGNV 388
|
...
gi 310750408 798 QFL 800
Cdd:COG3206 389 RVI 391
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
380-807 |
1.22e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 1.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 380 EVEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHvqlADKDLYvAEAlstlESWRSRynqVVKEKGDLE 459
Cdd:pfam01576 6 EMQAKEEELQKVKERQQKAESELKELEKKHQQLCEEKNALQEQLQ---AETELC-AEA----EEMRAR---LAARKQELE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 460 LEIIVLNDRV---TDLVNQQQTLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASV 536
Cdd:pfam01576 75 EILHELESRLeeeEERSQQLQNEKKKMQQHIQDLEEQLDEEEAARQKLQLEKVTTEAKIKKLEEDILLLEDQNSKLSKER 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 537 KNYEGMIDNYKSQVM----------KTRLEADEVAAQLERCDKENKILKDEMNK---EIEAARRQFQSQLADLQQLPDIL 603
Cdd:pfam01576 155 KLLEERISEFTSNLAeeeekakslsKLKNKHEAMISDLEERLKKEEKGRQELEKakrKLEGESTDLQEQIAELQAQIAEL 234
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 604 KITEAK----LAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVD----ELERKLEA 675
Cdd:pfam01576 235 RAQLAKkeeeLQAALARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEalktELEDTLDT 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 676 TSAQNieflQVIAKREEAIHQSQLRLEEKTR----ECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNkildLETQL 751
Cdd:pfam01576 315 TAAQQ----ELRSKREQEVTELKKALEEETRsheaQLQEMRQKHTQALEELTEQLEQAKRNKANLEKAKQA----LESEN 386
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*....
gi 310750408 752 SRTKTE---LSQLRRSRDDADRRYQSRLQDLKDRLEQSESTNRSMQNYVQFLKSSYANV 807
Cdd:pfam01576 387 AELQAElrtLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESV 445
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
609-761 |
1.50e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 609 KLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEATSAQ-----NIEF 683
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrNNKE 90
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 310750408 684 LQVIAKREEAIHQSQLRLEEKTRECGTLARQLESAIEDARRQVEQTKEHALSKERAAQNKILDLETQLSRTKTELSQL 761
Cdd:COG1579 91 YEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAEREEL 168
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
193-429 |
2.47e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.58 E-value: 2.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 193 TILQKKHLQQEkeclmskLVEAEMD-GAAAAKQVMALKDTIGKLKTEKQmtctdinTLTRQKELLlQKLSTFEETNRTLR 271
Cdd:PRK10929 21 TAPDEKQITQE-------LEQAKAAkTPAQAEIVEALQSALNWLEERKG-------SLERAKQYQ-QVIDNFPKLSAELR 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 272 DLLREQHCKEDSERLMEQQGALLKRLAEADS---EKARLLLLLQDKDKEVEELLQEIQCEKAQAKTA-SELSKSMESMRG 347
Cdd:PRK10929 86 QQLNNERDEPRSVPPNMSTDALEQEILQVSSqllEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQlNEIERRLQTLGT 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 348 ----HLQAQLRSKEAENSRLCMQIKNLER---SGNQHKAEVEAIMEQLKELKQKGDRDKESLKKAIRAQKER-AEKSEEY 419
Cdd:PRK10929 166 pntpLAQAQLTALQAESAALKALVDELELaqlSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQReAERALES 245
|
250
....*....|
gi 310750408 420 AEQLHVQLAD 429
Cdd:PRK10929 246 TELLAEQSGD 255
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
184-455 |
2.61e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 41.26 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 184 ERMKEEKdFTILQKKHLQQEKECLMS------KLVEAEMDGAAAAKQVMALKDTIGKLKTEKQMTCTDINTLTRQKEL-- 255
Cdd:pfam17380 286 ERQQQEK-FEKMEQERLRQEKEEKAReverrrKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERKRELer 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 256 -LLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKT 334
Cdd:pfam17380 365 iRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEER 444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 335 ASELS--KSMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQ-LKELKQKG----------DRDKES 401
Cdd:pfam17380 445 AREMErvRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKeLEERKQAMieeerkrkllEKEMEE 524
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 310750408 402 LKKAIRAQKERAEKSEEYAEQLHVQLADKdlyVAEALSTLESWRSRYNQVVKEK 455
Cdd:pfam17380 525 RQKAIYEEERRREAEEERRKQQEMEERRR---IQEQMRKATEERSRLEAMERER 575
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
314-446 |
2.83e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 40.72 E-value: 2.83e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 314 KDKEVEELLQEIQcEKAQAKTASELSK-SMESMRGHLQAQLRSKEAENSRLCMQIKNLERSGNQHKAEVEAIMEQLKELK 392
Cdd:PRK09039 51 KDSALDRLNSQIA-ELADLLSLERQGNqDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEK 129
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 310750408 393 QKGDRDKESLK------KAIRAQKERAEK----SEEYAEQLHVQLAD--KDLYVAEA--LSTLESWRS 446
Cdd:PRK09039 130 QVSARALAQVEllnqqiAALRRQLAALEAaldaSEKRDRESQAKIADlgRRLNVALAqrVQELNRYRS 197
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
166-728 |
3.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.05 E-value: 3.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 166 AHELAETEHENTVLRHNIERMKEEKDftilqkkhlqqekeclmskLVEAEMDGAAAakqvmalkDTIGKLKTEkqmtctd 245
Cdd:COG4913 301 RAELARLEAELERLEARLDALREELD-------------------ELEAQIRGNGG--------DRLEQLERE------- 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 246 INTLTRQKELLLQKLSTFEETNRTL-------RDLLREQHckedsERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEV 318
Cdd:COG4913 347 IERLERELEERERRRARLEALLAALglplpasAEEFAALR-----AEAAALLEALEEELEALEEALAEAEAALRDLRREL 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 319 EELLQEIQcekAQAKTASELSKSMESMRGHLQAQLRSKEAENSRLC--MQIKNLERS---------GNQ---------HK 378
Cdd:COG4913 422 RELEAEIA---SLERRKSNIPARLLALRDALAEALGLDEAELPFVGelIEVRPEEERwrgaiervlGGFaltllvppeHY 498
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 379 AEVEAIMEQLKeLKQK--GDRDKESLKKAIRAQKER---AEKSE----EYAEQLHVQLADKDLYV----AEALS------ 439
Cdd:COG4913 499 AAALRWVNRLH-LRGRlvYERVRTGLPDPERPRLDPdslAGKLDfkphPFRAWLEAELGRRFDYVcvdsPEELRrhprai 577
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 440 TLE----SWRSRYnqvvkEKGD----LELEIIVLN--DRVTDLVNQQQTLEEKMREdRDSLVERLHRQTAEYSAFKLENE 509
Cdd:COG4913 578 TRAgqvkGNGTRH-----EKDDrrriRSRYVLGFDnrAKLAALEAELAELEEELAE-AEERLEALEAELDALQERREALQ 651
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 510 RLkASFAPMEDKLNQAHLEVQQLKASVKNYE---GMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDE---MNKEIE 583
Cdd:COG4913 652 RL-AEYSWDEIDVASAEREIAELEAELERLDassDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKEleqAEEELD 730
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 584 AARRQFQsQLADLQQLPDILKITEAKLAECQDQLQGYERKNidLTAIISDLRSRIEHQGDKLEMAREKHQASQKENkqls 663
Cdd:COG4913 731 ELQDRLE-AAEDLARLELRALLEERFAAALGDAVERELREN--LEERIDALRARLNRAEEELERAMRAFNREWPAE---- 803
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 310750408 664 lkVDELERKLEAtsaqNIEFLQVIAK-REEAIHQ-----SQLRLEEKTRECGTLARQLESAIEDARRQVEQ 728
Cdd:COG4913 804 --TADLDADLES----LPEYLALLDRlEEDGLPEyeerfKELLNENSIEFVADLLSKLRRAIREIKERIDP 868
|
|
| Tropomyosin |
pfam00261 |
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 ... |
596-787 |
3.70e-03 |
|
Tropomyosin; Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites. The protein is best known for its role in regulating the interaction between actin and myosin in muscle contraction, but is also involved in the organization and dynamics of the cytoskeleton in non-muscle cells. There are multiple cell-specific isoforms, expressed by alternative promoters and alternative RNA processing of at least four genes. Muscle isoforms of tropomyosin are characterized by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region.
Pssm-ID: 459736 [Multi-domain] Cd Length: 235 Bit Score: 40.01 E-value: 3.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 596 LQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDELERKLEA 675
Cdd:pfam00261 3 MQQIKEELDEAEERLKEAMKKLEEAEKRAEKAEAEVAALNRRIQLLEEELERTEERLAEALEKLEEAEKAADESERGRKV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 676 TSAQNIEFLQVIAKREEAIHQSQLRLEEKTRECGTLARQLesaiedarRQVEQTKEHALSKERAAQNKILDLETQLSRTK 755
Cdd:pfam00261 83 LENRALKDEEKMEILEAQLKEAKEIAEEADRKYEEVARKL--------VVVEGDLERAEERAELAESKIVELEEELKVVG 154
|
170 180 190
....*....|....*....|....*....|....*
gi 310750408 756 TELSQL---RRSRDDADRRYQSRLQDLKDRLEQSE 787
Cdd:pfam00261 155 NNLKSLeasEEKASEREDKYEEQIRFLTEKLKEAE 189
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
280-485 |
4.91e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 4.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 280 KEDSERLMEQQGALLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRSKEAE 359
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 360 NSRlcmQIKNLERSGNQHKAEV-------EAIMEQLKELKQKGDRDKESLkKAIRAQKERAEKSEEYAEQLHVQLADKDL 432
Cdd:COG4942 106 LAE---LLRALYRLGRQPPLALllspedfLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 310750408 433 YVAEALSTLESWRSRYNQVVKEkgdLELEIIVLNDRVTDLVNQQQTLEEKMRE 485
Cdd:COG4942 182 ELEEERAALEALKAERQKLLAR---LEKELAELAAELAELQQEAEELEALIAR 231
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
251-511 |
4.94e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 4.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 251 RQKELLLQKLSTFEETNRTLRDLLRE-QHCKEDSERLMEQQGALLKRLAEA-DSEKARLLLLLQDKDKEVEELLQEIQCE 328
Cdd:pfam12128 622 AAEEQLVQANGELEKASREETFARTAlKNARLDLRRLFDEKQSEKDKKNKAlAERKDSANERLNSLEAQLKQLDKKHQAW 701
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 329 KAQAK-TASELSKSMESMRGHLQAQLRSKEAensRLCMQIKNLErsgNQHKAEVEAIMEQLK-ELKQKG-DRDKES-LKK 404
Cdd:pfam12128 702 LEEQKeQKREARTEKQAYWQVVEGALDAQLA---LLKAAIAARR---SGAKAELKALETWYKrDLASLGvDPDVIAkLKR 775
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 405 AIR---AQKERAEKSEEYAEQLHVQLAdkdlyvaealstlESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEE 481
Cdd:pfam12128 776 EIRtleRKIERIAVRRQEVLRYFDWYQ-------------ETWLQRRPRLATQLSNIERAISELQQQLARLIADTKLRRA 842
|
250 260 270
....*....|....*....|....*....|
gi 310750408 482 KMREDRDSLVERLHRQTAEYSAFKLENERL 511
Cdd:pfam12128 843 KLEMERKASEKQQVRLSENLRGLRCEMSKL 872
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
340-599 |
5.54e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.39 E-value: 5.54e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 340 KSMESMRGHLQAQLRSKEAENSRLcMQIKnlERSGNQHKAE--VEAIMEQLkeLKQKGDRDKESLKKAIRAQKERAEKSE 417
Cdd:COG3206 114 ASREAAIERLRKNLTVEPVKGSNV-IEIS--YTSPDPELAAavANALAEAY--LEQNLELRREEARKALEFLEEQLPELR 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 418 EYAEQLHVQLADkdlYVAEA-LSTLESwrsRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERLhr 496
Cdd:COG3206 189 KELEEAEAALEE---FRQKNgLVDLSE---EAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPELL-- 260
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 497 QTAEYSAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMID--------NYKSQVMKTRLEADEVAAQLERCD 568
Cdd:COG3206 261 QSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQLQqeaqrilaSLEAELEALQAREASLQAQLAQLE 340
|
250 260 270
....*....|....*....|....*....|....*..
gi 310750408 569 KENKILKD------EMNKEIEAARRQFQSQLADLQQL 599
Cdd:COG3206 341 ARLAELPEleaelrRLEREVEVARELYESLLQRLEEA 377
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
125-587 |
8.02e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 8.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 125 KKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERKEELEEVAHELAETEHENTVLRHNIERMKEEKDFTILQKKHLQQEK 204
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 205 -ECLMSKLVEAEMDGAAAAKQVMALKDTIGKLKTEKQmtctdintltRQKELLLQKLSTFEETNRTLRDLLREQHCKEDS 283
Cdd:PTZ00121 1446 aDEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEA----------KKADEAKKKAEEAKKKADEAKKAAEAKKKADEA 1515
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 284 ERLMEQQGALLKRLAE----ADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLqaqlrSKEAE 359
Cdd:PTZ00121 1516 KKAEEAKKADEAKKAEeakkADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEE-----AKKAE 1590
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 360 NSRLCMQIKNLERSgNQHKAEvEAIMEQLKELKQKGDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALS 439
Cdd:PTZ00121 1591 EARIEEVMKLYEEE-KKMKAE-EAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 440 TLESWRSRYNQVVKEKGDLELEIIVLNDRVTDLVNQQQ----TLEEKMREDRDSLVERLHRQTAEYSAFKLENERLKASF 515
Cdd:PTZ00121 1669 KAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEElkkkEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEE 1748
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 310750408 516 APMEDKLNQahlEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLErCDKENKILKDEMNKEIEAARR 587
Cdd:PTZ00121 1749 AKKDEEEKK---KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRME-VDKKIKDIFDNFANIIEGGKE 1816
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
293-675 |
8.60e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 39.49 E-value: 8.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 293 LLKRLAEADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKtasELSKSMESMRGHLQAQLRSKEAENSRLCMQIKNLER 372
Cdd:pfam07888 32 LQNRLEECLQERAELLQAQEAANRQREKEKERYKRDREQWE---RQRRELESRVAELKEELRQSREKHEELEEKYKELSA 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 373 SGNQHKAEVEAIMEQLKELKQK---GDRDKESLKKAIRAQKERAEKSEEYAEQLHVQLADKDlyvaealSTLESWRSRYN 449
Cdd:pfam07888 109 SSEELSEEKDALLAQRAAHEARireLEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEE-------AERKQLQAKLQ 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 450 QVVKEKGDLELEIIVLNDRVTDLVNQQQTLEEKMREDRDSLVERlHRQTAeysafklENERLKASFAPMEDKLNQAHLEV 529
Cdd:pfam07888 182 QTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTA-HRKEA-------ENEALLEELRSLQERLNASERKV 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 530 QQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKILKDEMNKEIEAARRQFQSQLADLQQLPDILKITEAK 609
Cdd:pfam07888 254 EGLGEELSSMAAQRDRTQAELHQARLQAAQLTLQLADASLALREGRARWAQERETLQQSAEADKDRIEKLSAELQRLEER 333
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 310750408 610 LAECQDQLQGYErknIDLTAIISDLRSRIEHQGDKLEMAREKHQASQKENKQLSLKVDEL---ERKLEA 675
Cdd:pfam07888 334 LQEERMEREKLE---VELGREKDCNRVQLSESRRELQELKASLRVAQKEKEQLQAEKQELleyIRQLEQ 399
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
167-593 |
9.57e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 9.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 167 HELAETEHENTVLRHNIERMKEEKDF--TILQKKHLQQEKECLMSKLVEAEmdgaaaaKQVMALKDtigkLKTEKQMTCT 244
Cdd:COG4717 102 EELEELEAELEELREELEKLEKLLQLlpLYQELEALEAELAELPERLEELE-------ERLEELRE----LEEELEELEA 170
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 245 DINTLTRQKELLLQKLStfeetnrtLRDLLREQHCKEDSERLMEQQGALLKRLAEADSEKARLLLLLQD--KDKEVEELL 322
Cdd:COG4717 171 ELAELQEELEELLEQLS--------LATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQleNELEAAALE 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 323 QEIQCEKAQAKTAS----------ELSKSMESMRGHLQAQL-------RSKEAENSRLCMQIKNLERSGNQHKAEVEAIM 385
Cdd:COG4717 243 ERLKEARLLLLIAAallallglggSLLSLILTIAGVLFLVLgllallfLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 386 EQLKELKQKGDRDKESLKKAIRAQKE------RAEKSEEYAEQLHVQLADKDLYVAEALSTLESWRSRYNQVvkekgdle 459
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEElqellrEAEELEEELQLEELEQEIAALLAEAGVEDEEELRAALEQA-------- 394
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 310750408 460 leiivlnDRVTDLVNQQQTLEEKMREDRDSLVERLHRQTAEysAFKLENERLKASFAPMEDKLNQAHLEVQQLKASVKNY 539
Cdd:COG4717 395 -------EEYQELKEELEELEEQLEELLGELEELLEALDEE--ELEEELEELEEELEELEEELEELREELAELEAELEQL 465
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 310750408 540 EGmidnyKSQVMKTRLEADEVAAQLERCDKE---NKILKDEMNKEIEAARRQFQSQL 593
Cdd:COG4717 466 EE-----DGELAELLQELEELKAELRELAEEwaaLKLALELLEEAREEYREERLPPV 517
|
|
| |
