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Conserved domains on  [gi|30424800|ref|NP_780399|]
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DNA repair protein SWI5 homolog isoform b [Mus musculus]

Protein Classification

Swi5 domain-containing protein (domain architecture ID 10537184)

Swi5 domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. ...
13-88 1.68e-23

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. It is known to interact with Swi2, Rhp51 and Swi6.


:

Pssm-ID: 399800  Cd Length: 79  Bit Score: 84.92  E-value: 1.68e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30424800   13 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 88
Cdd:pfam07061  1 LEAEIAELEAQLEELEKELAELKAELKnpdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVEMN 79
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. ...
13-88 1.68e-23

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 399800  Cd Length: 79  Bit Score: 84.92  E-value: 1.68e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30424800   13 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 88
Cdd:pfam07061  1 LEAEIAELEAQLEELEKELAELKAELKnpdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVEMN 79
 
Name Accession Description Interval E-value
Swi5 pfam07061
Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. ...
13-88 1.68e-23

Swi5; Swi5 is involved in meiotic DNA repair synthesis and meiotic joint molecule formation. It is known to interact with Swi2, Rhp51 and Swi6.


Pssm-ID: 399800  Cd Length: 79  Bit Score: 84.92  E-value: 1.68e-23
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30424800   13 LSSDIKKLKEKHDMLDKEISQLIAEGY---RVIELEKHISLLHEYNDIKDVSQMLLGKLAVTRGVTTKELYPDFDLNLN 88
Cdd:pfam07061  1 LEAEIAELEAQLEELEKELAELKAELKnpdPKETVKRHIKLLHEYNEIKDVGQGLIGLIADERGVTIKEVYEEFGVEMN 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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