NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|158303335|ref|NP_796314|]
View 

synaptopodin isoform A [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 576-848 1.69e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  576 SRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYT-APVQDSLQPTAVS----------- 643
Cdd:PHA03247 2467 SLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPdEPVGEPVHPRMLTwirgleelasd 2546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  644 ------PTYSSDISPVSPSRAwSPRAKQAPRP------SFSTRNAGIEAQDRPE------------SLPTSPPWTPAASR 699
Cdd:PHA03247 2547 dagdppPPLPPAAPPAAPDRS-VPPPRPAPRPsepavtSRARRPDAPPQSARPRapvddrgdprgpAPPSPLPPDTHAPD 2625

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  700 PPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRSETEARPPSRQLQALL---ARNIINAARRKSAS 776
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAArptVGSLTSLADPPPPP 2705

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158303335  777 PRPAPAETLRPFSPPQGPPPPPARMRSPQ-------PASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFP 848
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPAlpaapapPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
PRK13914 super family cl36314
invasion associated endopeptidase;
15-132 3.30e-06

invasion associated endopeptidase;


The actual alignment was detected with superfamily member PRK13914:

Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 50.57  E-value: 3.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  15 EKVASEEEEVPLVvylKENAALLTANGLHLSQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTA 94
Cdd:PRK13914 259 EAPAAEKQAAPVV---KENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSK 335

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 158303335  95 DINQNPPAAITPVPqNSSQAQCSPNGTLDSKPGTLCAD 132
Cdd:PRK13914 336 NTNTNTNSNTNTNS-NTNANQGSSNNNSNSSASAIIAE 372
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 52-344 2.19e-04

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335   52 QSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPAAITPVPQNSSQAQCSPNGTLDSKPGtlca 131
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA---- 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  132 dDGQSPVPAeevRSSILLIDKVSAPPSAASTFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPghvAVTTP 211
Cdd:PHA03247 2806 -DPPAAVLA---PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA---KPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  212 TKVYSEvhlTLAKPAsvVNRTARPFGIQSPGTSQIEQSPMMGRRQfgEKAWAPPASSMADRSPQPQRHIMSRSPMVERRL 291
Cdd:PHA03247 2879 ARPPVR---RLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQ--PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 158303335  292 LGQRSPVLERRPLGNFTPPPTYA-ETLSTAPVASRVRSPPSYSTLYPSSDPKPS 344
Cdd:PHA03247 2952 AGEPSGAVPQPWLGALVPGRVAVpRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 576-848 1.69e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  576 SRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYT-APVQDSLQPTAVS----------- 643
Cdd:PHA03247 2467 SLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPdEPVGEPVHPRMLTwirgleelasd 2546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  644 ------PTYSSDISPVSPSRAwSPRAKQAPRP------SFSTRNAGIEAQDRPE------------SLPTSPPWTPAASR 699
Cdd:PHA03247 2547 dagdppPPLPPAAPPAAPDRS-VPPPRPAPRPsepavtSRARRPDAPPQSARPRapvddrgdprgpAPPSPLPPDTHAPD 2625

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  700 PPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRSETEARPPSRQLQALL---ARNIINAARRKSAS 776
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAArptVGSLTSLADPPPPP 2705

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158303335  777 PRPAPAETLRPFSPPQGPPPPPARMRSPQ-------PASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFP 848
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPAlpaapapPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
PRK13914 PRK13914
invasion associated endopeptidase;
15-132 3.30e-06

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 50.57  E-value: 3.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  15 EKVASEEEEVPLVvylKENAALLTANGLHLSQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTA 94
Cdd:PRK13914 259 EAPAAEKQAAPVV---KENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSK 335

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 158303335  95 DINQNPPAAITPVPqNSSQAQCSPNGTLDSKPGTLCAD 132
Cdd:PRK13914 336 NTNTNTNSNTNTNS-NTNANQGSSNNNSNSSASAIIAE 372
PHA03247 PHA03247
large tegument protein UL36; Provisional
 52-344 2.19e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335   52 QSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPAAITPVPQNSSQAQCSPNGTLDSKPGtlca 131
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA---- 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  132 dDGQSPVPAeevRSSILLIDKVSAPPSAASTFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPghvAVTTP 211
Cdd:PHA03247 2806 -DPPAAVLA---PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA---KPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  212 TKVYSEvhlTLAKPAsvVNRTARPFGIQSPGTSQIEQSPMMGRRQfgEKAWAPPASSMADRSPQPQRHIMSRSPMVERRL 291
Cdd:PHA03247 2879 ARPPVR---RLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQ--PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 158303335  292 LGQRSPVLERRPLGNFTPPPTYA-ETLSTAPVASRVRSPPSYSTLYPSSDPKPS 344
Cdd:PHA03247 2952 AGEPSGAVPQPWLGALVPGRVAVpRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
 576-848 1.69e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  576 SRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYT-APVQDSLQPTAVS----------- 643
Cdd:PHA03247 2467 SLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPdEPVGEPVHPRMLTwirgleelasd 2546

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  644 ------PTYSSDISPVSPSRAwSPRAKQAPRP------SFSTRNAGIEAQDRPE------------SLPTSPPWTPAASR 699
Cdd:PHA03247 2547 dagdppPPLPPAAPPAAPDRS-VPPPRPAPRPsepavtSRARRPDAPPQSARPRapvddrgdprgpAPPSPLPPDTHAPD 2625

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  700 PPSSLDGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRSETEARPPSRQLQALL---ARNIINAARRKSAS 776
Cdd:PHA03247 2626 PPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAArptVGSLTSLADPPPPP 2705

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 158303335  777 PRPAPAETLRPFSPPQGPPPPPARMRSPQ-------PASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFP 848
Cdd:PHA03247 2706 PTPEPAPHALVSATPLPPGPAAARQASPAlpaapapPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLT 2784
PRK13914 PRK13914
invasion associated endopeptidase;
15-132 3.30e-06

invasion associated endopeptidase;


Pssm-ID: 237555 [Multi-domain]  Cd Length: 481  Bit Score: 50.57  E-value: 3.30e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  15 EKVASEEEEVPLVvylKENAALLTANGLHLSQSRETQQSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTA 94
Cdd:PRK13914 259 EAPAAEKQAAPVV---KENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSK 335

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 158303335  95 DINQNPPAAITPVPqNSSQAQCSPNGTLDSKPGTLCAD 132
Cdd:PRK13914 336 NTNTNTNSNTNTNS-NTNANQGSSNNNSNSSASAIIAE 372
PHA03247 PHA03247
large tegument protein UL36; Provisional
 491-853 4.85e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 4.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  491 SGHAELARCPSPTMSLPSSWKYTTNAPGGFRVASLSPARTPPASlyHGYLPENGVLRPEPTKQQPYQMRPSLYALSPVKE 570
Cdd:PHA03247 2578 SEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDT--HAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDD 2655

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  571 PA----KASSRATSSRTPSRTVSP--RAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYTAPVQDSLQPTAVSP 644
Cdd:PHA03247 2656 PApgrvSRPRRARRLGRAAQASSPpqRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPAL 2735

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  645 TYS--------------------SDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRPESLPTSP---PWTPAASRPP 701
Cdd:PHA03247 2736 PAApappavpagpatpggparpaRPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWdpaDPPAAVLAPA 2815

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  702 SSLDGWVSPGPWEP---GRGSSMSSPPPLPPPPPMSPSWSERSVSPLRSeteaRPPSRQLQALLARNIINAARRKSASPR 778
Cdd:PHA03247 2816 AALPPAASPAGPLPpptSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRR----RPPSRSPAAKPAAPARPPVRRLARPAV 2891

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 158303335  779 PAPAETLRPFSPPQGPPPPPARMRSPQPASPARnfrgAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSP 853
Cdd:PHA03247 2892 SRSTESFALPPDQPERPPQPQAPPPPQPQPQPP----PPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
486-706 3.38e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 47.54  E-value: 3.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 486 YVIESSGHAELARCPSP----TMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPyqmrPS 561
Cdd:PRK07003 328 YQIATVGRGELGLAPDEyagfTMTLLRMLAFEPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTA----VT 403

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 562 LYALSPVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYTAPVQDSLQPTA 641
Cdd:PRK07003 404 GAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 158303335 642 VSPTYSSDISP--VSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRPEslPTSPPWTPAASRPPSSLDG 706
Cdd:PRK07003 484 APPDAAFEPAPraAAPSAATPAAVPDARAPAAASREDAPAAAAPPA--PEARPPTPAAAAPAARAGG 548
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 490-863 1.10e-04

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 46.32  E-value: 1.10e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  490 SSGHAELARCPSPTMSLPSSWKYTTNAPGGFR--VASLSPARTPPAslyhgylPENGVLRPEPTKQQPYQMRPSLYALSP 567
Cdd:PHA03307   74 GPGTEAPANESRSTPTWSLSTLAPASPAREGSptPPGPSSPDPPPP-------TPPPASPPPSPAPDLSEMLRPVGSPGP 146

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  568 VKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGlytAPVQDSLQPTAVSPTYS 647
Cdd:PHA03307  147 PPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP---PRRSSPISASASSPAPA 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  648 SDISPVSPSRA--WSPRAKQAPRPSFSTRNAGIEAQDRPESLPTsPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPP 725
Cdd:PHA03307  224 PGRSAADDAGAssSDSSSSESSGCGWGPENECPLPRPAPITLPT-RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSS 302

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  726 PLPPPPPMSPSWSERSVSPLRSETEARPPSrqlqallarniiNAARRKSASPRPAPaetlRPFSPPQGPPPPPARMRSPQ 805
Cdd:PHA03307  303 PGSGPAPSSPRASSSSSSSRESSSSSTSSS------------SESSRGAAVSPGPS----PSRSPSPSRPPPPADPSSPR 366

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 158303335  806 PASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSPTDSDVSLDSE 863
Cdd:PHA03307  367 KRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRFPAGRPRPSPLDAGAASG 424
PHA03247 PHA03247
large tegument protein UL36; Provisional
 52-344 2.19e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 45.31  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335   52 QSSPNPPDTEVPSPAADINQNPSSPNATLTTLASSSHHSQPTADINQNPPAAITPVPQNSSQAQCSPNGTLDSKPGtlca 131
Cdd:PHA03247 2730 QASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPA---- 2805

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  132 dDGQSPVPAeevRSSILLIDKVSAPPSAASTFSREATPLSSSGPPAADLMSSSLLIDMQPSTLVAPAEQEVPghvAVTTP 211
Cdd:PHA03247 2806 -DPPAAVLA---PAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAA---KPAAP 2878

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  212 TKVYSEvhlTLAKPAsvVNRTARPFGIQSPGTSQIEQSPMMGRRQfgEKAWAPPASSMADRSPQPQRHIMSRSPMVERRL 291
Cdd:PHA03247 2879 ARPPVR---RLARPA--VSRSTESFALPPDQPERPPQPQAPPPPQ--PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAG 2951

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 158303335  292 LGQRSPVLERRPLGNFTPPPTYA-ETLSTAPVASRVRSPPSYSTLYPSSDPKPS 344
Cdd:PHA03247 2952 AGEPSGAVPQPWLGALVPGRVAVpRFRVPQPAPSREAPASSTPPLTGHSLSRVS 3005
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 549-717 6.71e-04

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 43.52  E-value: 6.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 549 EPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRaaSPAKPSSLDLVPNLPRAGLPPSPALPRPSrsspgl 628
Cdd:PTZ00449 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPK--SPKLPELLDIPKSPKRPESPKSPKRPPPP------ 639

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 629 yTAPVQDSLQPTAVSPTYSSdiSPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRPESLPTSPPWTPAASRPPSSLDGWV 708
Cdd:PTZ00449 640 -QRPSSPERPEGPKIIKSPK--PPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFT 716


                 ....*....
gi 158303335 709 SPGPWEPGR 717
Cdd:PTZ00449 717 TPRPLPPKL 725
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 566-754 7.31e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 43.44  E-value: 7.31e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 566 SPVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGlPPSPALPRPSRSSPGLYTAPVQDSLQPTAVSPT 645
Cdd:PRK07764 603 PASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA-APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAP 681

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 646 YSSDISPVSPSRAWSPRAKQAPRPSFSTRnagIEAQDRPESLPTSPPWTPAASRPPSSLDGWVSPGPWEPGRGSSMSSPP 725
Cdd:PRK07764 682 PPAPAPAAPAAPAGAAPAQPAPAPAATPP---AGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

                        170       180
                 ....*....|....*....|....*....
gi 158303335 726 PLPPPPPMSPSWSERSVSPLRSETEARPP 754
Cdd:PRK07764 759 PPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787
dnaA PRK14086
chromosomal replication initiator protein DnaA;
581-718 2.45e-03

chromosomal replication initiator protein DnaA;


Pssm-ID: 237605 [Multi-domain]  Cd Length: 617  Bit Score: 41.73  E-value: 2.45e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335 581 SRTPSRTVSP--RAASPAKPSSLDLVPNLPRAGLPPSPALPRPSRSSPGLYTAPVQDSLQPTAVSPTYSSDISPVSPSRA 658
Cdd:PRK14086  71 SETLSRELGRpiRIAITVDPSAGEPAPPPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPTARPAYPAYQ 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 158303335 659 WSPRAKQAPRPSFS-----TRNAGIEAQDRPEslPTSPPWTPAASRPPSSLDGWVSPGPWEPGRG 718
Cdd:PRK14086 151 QRPEPGAWPRAADDygwqqQRLGFPPRAPYAS--PASYAPEQERDREPYDAGRPEYDQRRRDYDH 213
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
35-126 4.56e-03

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 40.61  E-value: 4.56e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  35 ALLTANGLHLSQSRETQQSSPNPP-----DTEVPSPAADINQNPSSPNATLTtlaSSSHHSQPTADINQNPPAAITPVpQ 109
Cdd:PRK11907  16 ALLTASNPKLAQAEEIVTTTPATSteaeqTTPVESDATEEADNTETPVAATT---AAEAPSSSETAETSDPTSEATDT-T 91

                         90
                 ....*....|....*..
gi 158303335 110 NSSQAQCSPNGTLDSKP 126
Cdd:PRK11907  92 TSEARTVTPAATETSKP 108
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
 548-859 4.82e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 40.92  E-value: 4.82e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  548 PEPTKQQPYQMRPSLYALSPVKEPAKASSRATSSRTPSRTVSPRAASPAKPSSLDLVPNLPRAGLPP-------SPALPR 620
Cdd:PHA03307   61 ACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPpspapdlSEMLRP 140

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  621 PSRSSPGLYTAPVQDSLQPTAV--SPTYSSDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRPeslptSPPWTPAAS 698
Cdd:PHA03307  141 VGSPGPPPAASPPAAGASPAAVasDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRP-----PRRSSPISA 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  699 RPPSSldgwvSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRSETEARPPSRQLQAllARNIINAARRKSASPR 778
Cdd:PHA03307  216 SASSP-----APAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEA--SGWNGPSSRPGPASSS 288

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  779 PAPAEtlrpfsPPQGPPPPPARMRSPQPASPARNFRGAAFSPIPRSPLPIGPSSCASPRSPQAAPSRPFPYRRSPTDSDV 858
Cdd:PHA03307  289 SSPRE------RSPSPSPSSPGSGPAPSSPRASSSSSSSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADP 362


                  .
gi 158303335  859 S 859
Cdd:PHA03307  363 S 363
PHA03247 PHA03247
large tegument protein UL36; Provisional
 500-782 8.12e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 40.31  E-value: 8.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  500 PSPTMSLPSSWKYTTNAPGGFRVASLSPARTPPASLYHGYLPENGVLRPEPTKQQPYQMRPSLYALSPvkePAKASSRAT 579
Cdd:PHA03247 2712 PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP---PRRLTRPAV 2788

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  580 SSRTPSRTVSPRAASPAKPssldlvpnlPRAGLPPSPALPRPSRSSPGLytaPVQDSLQPTAVSPTYSSDISPVSPSRAW 659
Cdd:PHA03247 2789 ASLSESRESLPSPWDPADP---------PAAVLAPAAALPPAASPAGPL---PPPTSAQPTAPPPPPGPPPPSLPLGGSV 2856

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 158303335  660 SPRAKQAPRPSFSTRNAGIEAQDRPeslPTSPPWTPAASRPPSSL----DGWVSPGPWEPGRGSSMSSPPPLPPPPPMSP 735
Cdd:PHA03247 2857 APGGDVRRRPPSRSPAAKPAAPARP---PVRRLARPAVSRSTESFalppDQPERPPQPQAPPPPQPQPQPPPPPQPQPPP 2933

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 158303335  736 SWSERSVSPLRSETEARP--------PSRQLQALLARNIINAARR--KSASPRPAPA 782
Cdd:PHA03247 2934 PPPPRPQPPLAPTTDPAGagepsgavPQPWLGALVPGRVAVPRFRvpQPAPSREAPA 2990
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH