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Conserved domains on  [gi|307344690|ref|NP_796353|]
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rho GTPase-activating protein 32 isoform 2 [Mus musculus]

Protein Classification

Rho GTPase-activating protein( domain architecture ID 10138166)

Rho GTPase-activating protein for Rho/Rac/Cdc42-like small GTPases that act as molecular switches, active in their GTP-bound form but inactive when bound to GDP

CATH:  1.10.555.10
Gene Ontology:  GO:0007165|GO:0005096
PubMed:  17222083|12480336
SCOP:  4001255

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
19-213 1.58e-128

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


:

Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 399.18  E-value: 1.58e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCK 98
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 307344690  179 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
PHA03247 super family cl33720
large tegument protein UL36; Provisional
888-1270 1.05e-05

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  888 SPMPSTLPRDK-AHHPLSGSPEENSSTATMAYMMATPARAEPSNSEA-SRV----LAEQPSAADFVAATLQRthrtnrpl 961
Cdd:PHA03247 2611 PAPPSPLPPDThAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApGRVsrprRARRLGRAAQASSPPQR-------- 2682
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  962 ppppsQRPAEQPPVVGQVQEApsiglnnshkvqGTAPAPERPPESR----AMGDPAPIFLSDGTAAAQCPMGASAPQPGL 1037
Cdd:PHA03247 2683 -----PRRRAARPTVGSLTSL------------ADPPPPPPTPEPAphalVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1038 PEKVRESSRAPPLHLRAESFPGHSCGFAAPV-PPTRTMESKMAAALHSSAADATSSSN---YHSFVPSSASVDDVMPVPL 1113
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAaGPPRRLTRPAVASLSESRESLPSPWDpadPPAAVLAPAAALPPAASPA 2825
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1114 PVSQPKHASQKIAyssfarPDVTAEPFGPENCLHFNMTPNCQFRPQsvPPHHnklEPHQVYGARSEPPASMGPRyntyVA 1193
Cdd:PHA03247 2826 GPLPPPTSAQPTA------PPPPPGPPPPSLPLGGSVAPGGDVRRR--PPSR---SPAAKPAAPARPPVRRLAR----PA 2890
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307344690 1194 PGRNMSGHHSKPCSRveyvsslgSSVRNPCCPEDILPYPTIrRVQSLHAPPPsmiRSVPISRTEVPPDDEPAYCPRP 1270
Cdd:PHA03247 2891 VSRSTESFALPPDQP--------ERPPQPQAPPPPQPQPQP-PPPPQPQPPP---PPPPRPQPPLAPTTDPAGAGEP 2955
 
Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
19-213 1.58e-128

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 399.18  E-value: 1.58e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCK 98
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 307344690  179 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
37-188 1.80e-57

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 425782  Cd Length: 152  Bit Score: 195.48  E-value: 1.80e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690    37 PQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLtkEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 115
Cdd:pfam00620    1 PLIVRKCVEYLEKRGLdTEGIFRVSGSASRIKELREAFDSGEDVDL--DLEEEDVHDVASLLKLFLRELPEPLLTFELYE 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307344690   116 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 188
Cdd:pfam00620   79 EFIEAAKSEDEEERIEALRELLEKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPDSES 151
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
35-214 3.58e-56

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 192.87  E-value: 3.58e-56
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690     35 EVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYvqDIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:smart00324    2 PIPIIVEKCIEYLEKRGLdTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEY--DVHDVAGLLKLFLRELPEPLITYEL 79
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690    114 YEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESacfsg 193
Cdd:smart00324   80 YEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV----- 154
                           170       180
                    ....*....|....*....|.
gi 307344690    194 tAAFMEVRIQSVVVEFILNHV 214
Cdd:smart00324  155 -ASLKDIRHQNTVIEFLIENA 174
PHA03247 PHA03247
large tegument protein UL36; Provisional
888-1270 1.05e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  888 SPMPSTLPRDK-AHHPLSGSPEENSSTATMAYMMATPARAEPSNSEA-SRV----LAEQPSAADFVAATLQRthrtnrpl 961
Cdd:PHA03247 2611 PAPPSPLPPDThAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApGRVsrprRARRLGRAAQASSPPQR-------- 2682
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  962 ppppsQRPAEQPPVVGQVQEApsiglnnshkvqGTAPAPERPPESR----AMGDPAPIFLSDGTAAAQCPMGASAPQPGL 1037
Cdd:PHA03247 2683 -----PRRRAARPTVGSLTSL------------ADPPPPPPTPEPAphalVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1038 PEKVRESSRAPPLHLRAESFPGHSCGFAAPV-PPTRTMESKMAAALHSSAADATSSSN---YHSFVPSSASVDDVMPVPL 1113
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAaGPPRRLTRPAVASLSESRESLPSPWDpadPPAAVLAPAAALPPAASPA 2825
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1114 PVSQPKHASQKIAyssfarPDVTAEPFGPENCLHFNMTPNCQFRPQsvPPHHnklEPHQVYGARSEPPASMGPRyntyVA 1193
Cdd:PHA03247 2826 GPLPPPTSAQPTA------PPPPPGPPPPSLPLGGSVAPGGDVRRR--PPSR---SPAAKPAAPARPPVRRLAR----PA 2890
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307344690 1194 PGRNMSGHHSKPCSRveyvsslgSSVRNPCCPEDILPYPTIrRVQSLHAPPPsmiRSVPISRTEVPPDDEPAYCPRP 1270
Cdd:PHA03247 2891 VSRSTESFALPPDQP--------ERPPQPQAPPPPQPQPQP-PPPPQPQPPP---PPPPRPQPPLAPTTDPAGAGEP 2955
 
Name Accession Description Interval E-value
RhoGAP_CdGAP cd04384
RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
19-213 1.58e-128

RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239849 [Multi-domain]  Cd Length: 195  Bit Score: 399.18  E-value: 1.58e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCK 98
Cdd:cd04384     1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGIVDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLCK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04384    81 LYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVIQQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVWAP 160
                         170       180       190
                  ....*....|....*....|....*....|....*
gi 307344690  179 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04384   161 NLLRSKQIESACFSGTAAFMEVRIQSVVVEFILNH 195
RhoGAP pfam00620
RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.
37-188 1.80e-57

RhoGAP domain; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases.


Pssm-ID: 425782  Cd Length: 152  Bit Score: 195.48  E-value: 1.80e-57
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690    37 PQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLtkEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYE 115
Cdd:pfam00620    1 PLIVRKCVEYLEKRGLdTEGIFRVSGSASRIKELREAFDSGEDVDL--DLEEEDVHDVASLLKLFLRELPEPLLTFELYE 78
                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 307344690   116 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIES 188
Cdd:pfam00620   79 EFIEAAKSEDEEERIEALRELLEKLPPANRDTLRYLLAHLNRVAQNSDVNKMNAHNLAIVFGPTLLRPPDSES 151
RhoGAP smart00324
GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac ...
35-214 3.58e-56

GTPase-activator protein for Rho-like GTPases; GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.


Pssm-ID: 214618  Cd Length: 174  Bit Score: 192.87  E-value: 3.58e-56
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690     35 EVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYvqDIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:smart00324    2 PIPIIVEKCIEYLEKRGLdTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEY--DVHDVAGLLKLFLRELPEPLITYEL 79
                            90       100       110       120       130       140       150       160
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690    114 YEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESacfsg 193
Cdd:smart00324   80 YEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV----- 154
                           170       180
                    ....*....|....*....|.
gi 307344690    194 tAAFMEVRIQSVVVEFILNHV 214
Cdd:smart00324  155 -ASLKDIRHQNTVIEFLIENA 174
RhoGAP cd00159
RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like ...
37-213 6.52e-52

RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.


Pssm-ID: 238090  Cd Length: 169  Bit Score: 180.19  E-value: 6.52e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   37 PQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEpyvQDIHSVGSLCKLYFRELPNPLLTYQLYE 115
Cdd:cd00159     1 PLIIEKCIEYLEKNGLnTEGIFRVSGSASKIEELKKKFDRGEDIDDLED---YDVHDVASLLKLYLRELPEPLIPFELYD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  116 KFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQiesacfSGTA 195
Cdd:cd00159    78 EFIELAKIEDEEERIEALKELLKSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPD------SDDE 151
                         170
                  ....*....|....*...
gi 307344690  196 AFMEVRIQSVVVEFILNH 213
Cdd:cd00159   152 LLEDIKKLNEIVEFLIEN 169
RhoGAP_fRGD1 cd04398
RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
21-218 9.32e-44

RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239863  Cd Length: 192  Bit Score: 157.95  E-value: 9.32e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSE--HVPDLTKEPYVQDIHSVGSLC 97
Cdd:cd04398     1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLnLEGIYRLSGNVSRVNKLKELFDKDplNVLLISPEDYESDIHSVASLL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   98 KLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 177
Cdd:cd04398    81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLINDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIWG 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 307344690  178 PNLLRSKqiesacfSGTAAfmEVRIQSVVVEFILNHVDVLF 218
Cdd:cd04398   161 PTLMNAA-------PDNAA--DMSFQSRVIETLLDNAYQIF 192
RhoGAP_nadrin cd04386
RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
19-220 5.14e-42

RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239851  Cd Length: 203  Bit Score: 153.38  E-value: 5.14e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHEFDSEHVpDLTKEPYVQDIHSVGSLC 97
Cdd:cd04386     3 PVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEeGLFRVGGGASKLKRLKAALDAGTF-SLPLDEFYSDPHAVASAL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   98 KLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 177
Cdd:cd04386    82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRILNKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLA 161
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 307344690  178 PNLLRSKqIESACFSGTAAfMEVRIqSVVVEFILNHVDVLFSG 220
Cdd:cd04386   162 PNLLWAK-NEGSLAEMAAG-TSVHV-VAIVELIISHADWFFPG 201
RhoGAP_chimaerin cd04372
RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
21-218 1.67e-36

RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239837  Cd Length: 194  Bit Score: 137.26  E-value: 1.67e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIV-DGIYRLSGVASNIQRLRHEFDSE-HVPDLTKEPYvQDIHSVGSLCK 98
Cdd:cd04372     1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQsEGLYRVSGFAEEIEDVKMAFDRDgEKADISATVY-PDINVITGALK 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04372    80 LYFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEALMLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 307344690  179 NLLRSKQIesacfSGTAAFMEVRIQSVVVEFILNHVDVLF 218
Cdd:cd04372   160 TLMRPPED-----SALTTLNDMRYQILIVQLLITNEDVLF 194
RhoGAP_ARHGAP27_15_12_9 cd04403
RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
21-211 2.06e-36

RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239868 [Multi-domain]  Cd Length: 187  Bit Score: 136.75  E-value: 2.06e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYvQDIHSVGSLCKL 99
Cdd:cd04403     1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLdVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKW-EDIHVITGALKL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  100 YFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPN 179
Cdd:cd04403    80 FFRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLIKSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159
                         170       180       190
                  ....*....|....*....|....*....|..
gi 307344690  180 LLRSKQiesacFSGTAAFMEVrIQSVVVEFIL 211
Cdd:cd04403   160 LLRPEQ-----ETGNIAVHMV-YQNQIVELIL 185
RhoGAP_ARHGAP21 cd04395
RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
36-218 6.72e-35

RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239860  Cd Length: 196  Bit Score: 132.52  E-value: 6.72e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLY 114
Cdd:cd04395    18 VPLIVEVCCNIVEARGLeTVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLLKSFFRKLPEPLFTNELY 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  115 EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIesacfSGT 194
Cdd:cd04395    98 PDFIEANRIEDPVERLKELRRLIHSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVFGPTLVRTSDD-----NME 172
                         170       180
                  ....*....|....*....|....
gi 307344690  195 AAFMEVRIQSVVVEFILNHVDVLF 218
Cdd:cd04395   173 TMVTHMPDQCKIVETLIQHYDWFF 196
RhoGAP_myosin_IX cd04377
RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
21-182 5.70e-31

RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239842  Cd Length: 186  Bit Score: 121.01  E-value: 5.70e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEhLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEhvPDLTK-EPYvqDIHSVGSLCK 98
Cdd:cd04377     1 FGVSLSS-LTSEDRSVPLVLEKLLEHIEMHGLyTEGIYRKSGSANKIKELRQGLDTD--PDSVNlEDY--PIHVITSVLK 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04377    76 QWLRELPEPLMTFELYENFLRAMELEEKQERVRALYSVLEQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAP 155

                  ....
gi 307344690  179 NLLR 182
Cdd:cd04377   156 CILR 159
RhoGAP_GMIP_PARG1 cd04378
RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
21-213 2.91e-30

RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239843  Cd Length: 203  Bit Score: 119.45  E-value: 2.91e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEHLLNSGFEVPQVLQSCTAFIE-RYGIVDGIYRLSGVASNIQRLRHEFD--------SEHVPdltkepyvqdiH 91
Cdd:cd04378     1 FGVDFSQVPRDFPDEVPFIIKKCTSEIEnRALGVQGIYRVSGSKARVEKLCQAFEngkdlvelSELSP-----------H 69
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   92 SVGSLCKLYFRELPNPLLTYQLYEKFSD-------------AVSAATDEERLI-KIHDVIQQLPPPHYRTLEFLMRHLSL 157
Cdd:cd04378    70 DISSVLKLFLRQLPEPLILFRLYNDFIAlakeiqrdteedkAPNTPIEVNRIIrKLKDLLRQLPASNYNTLQHLIAHLYR 149
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 307344690  158 LADYCSITNMHAKNLAIVWAPNLLRSKQIESACfsGTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04378   150 VAEQFEENKMSPNNLGIVFGPTLIRPRPGDADV--SLSSLVDYGYQARLVEFLITN 203
RhoGAP_Bcr cd04387
RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr ...
36-213 3.26e-28

RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239852 [Multi-domain]  Cd Length: 196  Bit Score: 113.48  E-value: 3.26e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVqDIHSVGSLCKLYFRELPNPLLTYQLY 114
Cdd:cd04387    16 VPYIVRQCVEEVERRGMEEvGIYRISGVATDIQALKAAFDTNNKDVSVMLSEM-DVNAIAGTLKLYFRELPEPLFTDELY 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  115 EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSGT 194
Cdd:cd04387    95 PNFAEGIALSDPVAKESCMLNLLLSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPTLLRPSEKESKIPTNT 174
                         170       180
                  ....*....|....*....|..
gi 307344690  195 AAF---MEVRIQSVVVEFILNH 213
Cdd:cd04387   175 MTDswsLEVMSQVQVLLYFLQL 196
RhoGAP_Graf cd04374
RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase ...
26-213 3.85e-28

RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239839  Cd Length: 203  Bit Score: 113.26  E-value: 3.85e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   26 GEHLLNS-GFevpQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHE-FDSEHVP--DLTKEPYVQDIHSVGSLCKLY 100
Cdd:cd04374    20 GEAQLDDiGF---KFVRKCIEAVETRGINEqGLYRVVGVNSKVQKLLSLgLDPKTSTpgDVDLDNSEWEIKTITSALKTY 96
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  101 FRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNL 180
Cdd:cd04374    97 LRNLPEPLMTYELHNDFINAAKSENLESRVNAIHSLVHKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTL 176
                         170       180       190
                  ....*....|....*....|....*....|...
gi 307344690  181 LRSKQiESacfsgTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04374   177 LRPQE-ET-----VAAIMDIKFQNIVVEILIEN 203
RhoGAP_ARHGAP6 cd04376
RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
35-226 1.27e-27

RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239841  Cd Length: 206  Bit Score: 112.15  E-value: 1.27e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   35 EVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEpyvQDIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:cd04376     8 QVPRLVESCCQHLEKHGLqTVGIFRVGSSKKRVRQLREEFDRGIDVVLDEN---HSVHDVAALLKEFFRDMPDPLLPREL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  114 YEKFSDAVSAATDeERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSIT-----------NMHAKNLAIVWAPNLLR 182
Cdd:cd04376    85 YTAFIGTALLEPD-EQLEALQLLIYLLPPCNCDTLHRLLKFLHTVAEHAADSidedgqevsgnKMTSLNLATIFGPNLLH 163
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*
gi 307344690  183 SKQIESACFSGTAAFMEVRIQSV-VVEFILNHVDVLFsgKISAVM 226
Cdd:cd04376   164 KQKSGEREFVQASLRIEESTAIInVVQTMIDNYEELF--MVSPEL 206
RhoGAP_ARAP cd04385
RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
26-189 8.97e-27

RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239850  Cd Length: 184  Bit Score: 108.93  E-value: 8.97e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   26 GEHLLN---SGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEF--DSEHVpDLTKEPYvqDIHSVGSLCKL 99
Cdd:cd04385     2 GPALEDqqlTDNDIPVIVDKCIDFITQHGLmSEGIYRKNGKNSSVKKLLEAFrkDARSV-QLREGEY--TVHDVADVLKR 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  100 YFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPN 179
Cdd:cd04385    79 FLRDLPDPLLTSELHAEWIEAAELENKDERIARYKELIRRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPT 158
                         170
                  ....*....|
gi 307344690  180 LLRSKQIESA 189
Cdd:cd04385   159 LFQTDEHSVG 168
RhoGAP_fBEM3 cd04400
RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of ...
20-180 1.12e-26

RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239865 [Multi-domain]  Cd Length: 190  Bit Score: 108.60  E-value: 1.12e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   20 VFGCDLGEHL-LNS----GFEVPQVLQSCTAFIERYGIV--DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHS 92
Cdd:cd04400     1 IFGSPLEEAVeLSShkynGRDLPSVVYRCIEYLDKNRAIyeEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   93 VGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDE-ERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKN 171
Cdd:cd04400    81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRsQRALELKDLVSQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLRN 160

                  ....*....
gi 307344690  172 LAIVWAPNL 180
Cdd:cd04400   161 VCIVFSPTL 169
RhoGAP_PARG1 cd04409
RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
21-213 4.37e-25

RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239874  Cd Length: 211  Bit Score: 104.89  E-value: 4.37e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEHLLNSGFEVPQVLQSCTAFIE-RYGIVDGIYRLSGVASNIQRLRHEFDS-EHVPDLTkEPYVQDIHSVgslCK 98
Cdd:cd04409     1 FGADFAQVAKKSPDGIPFIIKKCTSEIEsRALCLKGIYRVNGAKSRVEKLCQAFENgKDLVELS-ELSPHDISNV---LK 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKF------------SDAVSAATDEER----------LIKIHDVIQQLPPPHYRTLEFLMRHLS 156
Cdd:cd04409    77 LYLRQLPEPLILFRLYNEFiglakesqhvneTQEAKKNSDKKWpnmctelnriLLKSKDLLRQLPAPNYNTLQFLIVHLH 156
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 307344690  157 LLADYCSITNMHAKNLAIVWAPNLLRSKQIESACfsGTAAFMEVRIQSVVVEFILNH 213
Cdd:cd04409   157 RVSEQAEENKMSASNLGIIFGPTLIRPRPTDATV--SLSSLVDYPHQARLVELLITY 211
RhoGAP_p190 cd04373
RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
35-212 8.44e-25

RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239838  Cd Length: 185  Bit Score: 103.30  E-value: 8.44e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   35 EVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVqdIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:cd04373    14 PIPIFLEKCVEFIEATGLeTEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFT--VNAVAGALKSFFSELPDPLIPYSM 91
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  114 YEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSG 193
Cdd:cd04373    92 HLELVEAAKINDREQRLHALKELLKKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLMRPDFTSMEALSA 171
                         170
                  ....*....|....*....
gi 307344690  194 TAAFmevriQSVVVEFILN 212
Cdd:cd04373   172 TRIY-----QTIIETFIQQ 185
RhoGAP_FAM13A1a cd04393
RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
19-180 3.97e-24

RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.


Pssm-ID: 239858 [Multi-domain]  Cd Length: 189  Bit Score: 101.38  E-value: 3.97e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEhLLNSGF---EVPQVLQSCTAFIERYGIV-DGIYRLSGVASNIQRLRHEFDS-EHVpDLTKEpyvQDIHSV 93
Cdd:cd04393     1 KVFGVPLQE-LQQAGQpenGVPAVVRHIVEYLEQHGLEqEGLFRVNGNAETVEWLRQRLDSgEEV-DLSKE---ADVCSA 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   94 GSLCKLYFRELPNPLLT-------YQLYEKFSDavsaatDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITN 166
Cdd:cd04393    76 ASLLRLFLQELPEGLIPaslqirlMQLYQDYNG------EDEFGRKLRDLLQQLPPVNYSLLKFLCHFLSNVASQHHENR 149
                         170
                  ....*....|....
gi 307344690  167 MHAKNLAIVWAPNL 180
Cdd:cd04393   150 MTAENLAAVFGPDV 163
RhoGAP-p50rhoGAP cd04404
RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
21-218 9.40e-24

RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239869  Cd Length: 195  Bit Score: 100.49  E-value: 9.40e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLgEHLLNSGFE---VPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKepyVQDIHSVGSL 96
Cdd:cd04404     6 FGVSL-QFLKEKNPEqepIPPVVRETVEYLQAHALtTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQ---YEDVHLPAVI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   97 CKLYFRELPNPLLTYQLYEKFSdAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVW 176
Cdd:cd04404    82 LKTFLRELPEPLLTFDLYDDIV-GFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVF 160
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 307344690  177 APNLLRSKqiesacfSGTAAFMEVRIQSVVVEFILNHVDVLF 218
Cdd:cd04404   161 GPNLLWAK-------DASMSLSAINPINTFTKFLLDHQDEIF 195
RhoGAP_ARHGAP22_24_25 cd04390
RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
15-213 1.22e-23

RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239855 [Multi-domain]  Cd Length: 199  Bit Score: 100.21  E-value: 1.22e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   15 ILKERVFGCDLgehllnsgfeVPQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHEFDSEHVPDLTKEpyvQDIHSV 93
Cdd:cd04390    11 VAYERKFGPRL----------VPILVEQCVDFIREHGLKEeGLFRLPGQANLVKQLQDAFDAGERPSFDSD---TDVHTV 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   94 GSLCKLYFRELPNPLLTYQLYEKF--SDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKN 171
Cdd:cd04390    78 ASLLKLYLRELPEPVIPWAQYEDFlsCAQLLSKDEEKGLGELMKQVSILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQN 157
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 307344690  172 LAIVWAPNLLRSKqIESAcfsgtAAFME--VRIQSVVVEFILNH 213
Cdd:cd04390   158 LATVFGPNILRPK-VEDP-----ATIMEgtPQIQQLMTVMISKH 195
RhoGAP_srGAP cd04383
RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
19-182 1.56e-23

RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239848  Cd Length: 188  Bit Score: 99.80  E-value: 1.56e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   19 RVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGIV-DGIYRLSGVASNIQRLRHEFDSEHVPdLTKEPYVQDIHSVGSLC 97
Cdd:cd04383     1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQhQGIFRVSGSQVEVNDIKNAFERGEDP-LADDQNDHDINSVAGVL 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   98 KLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 177
Cdd:cd04383    80 KLYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREILSTLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159

                  ....*
gi 307344690  178 PNLLR 182
Cdd:cd04383   160 PTLMP 164
RhoGAP_myosin_IXB cd04407
RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
21-182 1.86e-22

RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239872 [Multi-domain]  Cd Length: 186  Bit Score: 96.60  E-value: 1.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEhLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEhvPDLTK-EPYvqDIHSVGSLCK 98
Cdd:cd04407     1 FGVRVGS-LTSNKTSVPIVLEKLLEHVEMHGLyTEGIYRKSGSANRMKELHQLLQAD--PENVKlENY--PIHAITGLLK 75
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   99 LYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAP 178
Cdd:cd04407    76 QWLRELPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVLEQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAP 155

                  ....
gi 307344690  179 NLLR 182
Cdd:cd04407   156 CLLR 159
RhoGap_RalBP1 cd04381
RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
33-191 8.54e-22

RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239846 [Multi-domain]  Cd Length: 182  Bit Score: 94.42  E-value: 8.54e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   33 GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLtkEPYvqDIHSVGSLCKLYFRELPNPLLTY 111
Cdd:cd04381    17 GIDLPLVFRECIDYVEKHGMkCEGIYKVSGIKSKVDELKAAYNRRESPNL--EEY--EPPTVASLLKQYLRELPEPLLTK 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  112 QLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACF 191
Cdd:cd04381    93 ELMPRFEEACGRPTEAEREQELQRLLKELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSPTVQISNRLLYALL 172
RhoGAP_MgcRacGAP cd04382
RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
36-212 1.15e-21

RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239847  Cd Length: 193  Bit Score: 94.28  E-value: 1.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYGIVD-GIYRLSGVASNIQRLRHEF-DSEHVPDLTKepyvQDIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:cd04382    17 IPALIVHCVNEIEARGLTEeGLYRVSGSEREVKALKEKFlRGKTVPNLSK----VDIHVICGCLKDFLRSLKEPLITFAL 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  114 YEKFSDAVSAAtDEERLIK-IHDVIQQLPPPHYRTLEFLMRHLSLLADyCSITNMHAKNLAIVWAPNLLRSKQIESacfS 192
Cdd:cd04382    93 WKEFMEAAEIL-DEDNSRAaLYQAISELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP---D 167
                         170       180
                  ....*....|....*....|
gi 307344690  193 GTAAFMEVRIQSVVVEFILN 212
Cdd:cd04382   168 PMTILQDTVRQPRVVERLLE 187
RhoGAP_ARHGAP20 cd04402
RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
36-218 2.32e-21

RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239867  Cd Length: 192  Bit Score: 93.52  E-value: 2.32e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYG-IVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPyvqdIHSVGSLCKLYFRELPNPLLTYQLY 114
Cdd:cd04402    15 LPKPILDMLSLLYQKGpSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEP----VLLLASVLKDFLRNIPGSLLSSDLY 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  115 EKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSkqieSACFSGT 194
Cdd:cd04402    91 EEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWP----PASSELQ 166
                         170       180
                  ....*....|....*....|....
gi 307344690  195 AAFMEVriQSVVVEFILNHVDVLF 218
Cdd:cd04402   167 NEDLKK--VTSLVQFLIENCQEIF 188
RhoGAP_GMIP cd04408
RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP ...
35-213 3.24e-21

RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239873  Cd Length: 200  Bit Score: 93.34  E-value: 3.24e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   35 EVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFD--------SEHVPdltkepyvqdiHSVGSLCKLYFRELP 105
Cdd:cd04408    15 EVPFVVVRCTAEIENRALgVQGIYRISGSKARVEKLCQAFEngrdlvdlSGHSP-----------HDITSVLKHFLKELP 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  106 NPLLTYQLYEKF------------SDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLA 173
Cdd:cd04408    84 EPVLPFQLYDDFialakelqrdseKAAESPSIVENIIRSLKELLGRLPVSNYNTLRHLMAHLYRVAERFEDNKMSPNNLG 163
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 307344690  174 IVWAPNLLR---SKQIESACfsgtaaFMEVRIQSVVVEFILNH 213
Cdd:cd04408   164 IVFGPTLLRplvGGDVSMIC------LLDTGYQAQLVEFLISN 200
RhoGAP_myosin_IXA cd04406
RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
21-182 4.75e-21

RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239871  Cd Length: 186  Bit Score: 92.37  E-value: 4.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   21 FGCDLGEhLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEhVPDLTKEPYvqDIHSVGSLCKL 99
Cdd:cd04406     1 FGVELSR-LTSEDRSVPLVVEKLINYIEMHGLyTEGIYRKSGSTNKIKELRQGLDTD-ANSVNLDDY--NIHVIASVFKQ 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  100 YFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPN 179
Cdd:cd04406    77 WLRDLPNPLMTFELYEEFLRAMGLQERRETVRGVYSVIDQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPC 156

                  ...
gi 307344690  180 LLR 182
Cdd:cd04406   157 ILR 159
RhoGAP_SYD1 cd04379
RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
36-185 8.61e-20

RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239844  Cd Length: 207  Bit Score: 89.45  E-value: 8.61e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVP-DLTKEPYvQDIHSVGSLCKLYFRELPNPLLTYQL 113
Cdd:cd04379    18 VPIVLQKCVQEIERRGLdVIGLYRLCGSAAKKKELRDAFERNSAAvELSEELY-PDINVITGVLKDYLRELPEPLITPQL 96
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307344690  114 YEKFSDAVSAATDEERLIKIHD---VIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQ 185
Cdd:cd04379    97 YEMVLEALAVALPNDVQTNTHLtlsIIDCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQ 171
RhoGAP_fLRG1 cd04397
RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
53-184 4.47e-19

RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239862  Cd Length: 213  Bit Score: 87.42  E-value: 4.47e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   53 VDGIYRLSGvasNIQRLR---HEFDSE--HVPDLTKEPYVQdihsVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDE 127
Cdd:cd04397    45 VEGVFRKNG---NIRRLKeltEEIDKNptEVPDLSKENPVQ----LAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEE 117
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 307344690  128 ERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITN-----MHAKNLAIVWAPNLLRSK 184
Cdd:cd04397   118 ERKRVLHLVYCLLPKYHRDTMEVLFSFLKWVSSFSHIDEetgskMDIHNLATVITPNILYSK 179
RhoGAP_ARHGAP18 cd04391
RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
20-218 5.59e-18

RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239856  Cd Length: 216  Bit Score: 84.32  E-value: 5.59e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   20 VFGCDLGEHLLNS-----GFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQdIHSV 93
Cdd:cd04391     1 LFGVPLSTLLERDqkkvpGSKVPLIFQKLINKLEERGLeTEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVK-QHDA 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   94 GSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLA 173
Cdd:cd04391    80 ASLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLVLLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 307344690  174 IVWAPNLLRSKQIESACFSGTAAFMEVRIQ-SVVVEFILNHVDVLF 218
Cdd:cd04391   160 MIMAPNLFPPRGKHSKDNESLQEEVNMAAGcANIMRLLIRYQDLLW 205
RhoGAP_DLC1 cd04375
RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
20-180 6.66e-17

RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239840  Cd Length: 220  Bit Score: 81.31  E-value: 6.66e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   20 VFGCDLGEHLLNSGFEVPQVLQSCTAFIeRYGIVD--GIYRLSGVASNIQRLRHEFDSEHVPDLTKEpyvQDIHSVGSLC 97
Cdd:cd04375     4 VFGVPLLVNLQRTGQPLPRSIQQAMRWL-RNNALDqvGLFRKSGVKSRIQKLRSMIESSTDNVNYDG---QQAYDVADML 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   98 KLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWA 177
Cdd:cd04375    80 KQYFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAILLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLA 159

                  ...
gi 307344690  178 PNL 180
Cdd:cd04375   160 PSL 162
RhoGAP-ARHGAP11A cd04394
RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
20-208 1.58e-16

RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239859 [Multi-domain]  Cd Length: 202  Bit Score: 79.82  E-value: 1.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   20 VFGCDL----GEHLLNSGfEVPQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYvqdihSVGS 95
Cdd:cd04394     1 VFGVPLhslpHSTVPEYG-NVPKFLVDACTFLLDHLSTEGLFRKSGSVVRQKELKAKLEGGEACLSSALPC-----DVAG 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   96 LCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIV 175
Cdd:cd04394    75 LLKQFFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLLTCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVI 154
                         170       180       190
                  ....*....|....*....|....*....|...
gi 307344690  176 WAPNLLRSKQIESACFSGTAafMEVRIQSVVVE 208
Cdd:cd04394   155 FAPNLFQSEEGGEKMSSSTE--KRLRLQAAVVQ 185
RhoGAP_KIAA1688 cd04389
RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ...
54-182 1.13e-15

RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239854  Cd Length: 187  Bit Score: 77.05  E-value: 1.13e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   54 DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEpyvqDIHSVGSLCKLYFRELPNPLLTYQLYEkfsDAVSAATDEERLIKI 133
Cdd:cd04389    41 EGIFRVPGDIDEVNELKLRVDQWDYPLSGLE----DPHVPASLLKLWLRELEEPLIPDALYQ---QCISASEDPDKAVEI 113
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 307344690  134 hdvIQQLPPPHYRTLEFLMRHLSLLA--DYCSITNMHAKNLAIVWAPNLLR 182
Cdd:cd04389   114 ---VQKLPIINRLVLCYLINFLQVFAqpENVAHTKMDVSNLAMVFAPNILR 161
RhoGAP_fSAC7_BAG7 cd04396
RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
36-217 1.03e-12

RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239861  Cd Length: 225  Bit Score: 69.36  E-value: 1.03e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   36 VPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEhvPDLTK----EPYvqDIHSVGSLCKLYFRELPNPLLT 110
Cdd:cd04396    32 IPVVVAKCGVYLKENATeVEGIFRVAGSSKRIRELQLIFSTP--PDYGKsfdwDGY--TVHDAASVLRRYLNNLPEPLVP 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  111 YQLYEKFSDAVSAATDEERLIKIH-----------------DVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLA 173
Cdd:cd04396   108 LDLYEEFRNPLRKRPRILQYMKGRineplntdidqaikeyrDLITRLPNLNRQLLLYLLDLLAVFARNSDKNLMTASNLA 187
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 307344690  174 IVWAPNLLRSKQIESACfsgtaafMEVRIQSVVVEFILNHVDVL 217
Cdd:cd04396   188 AIFQPGILSHPDHEMDP-------KEYKLSRLVVEFLIEHQDKF 224
RhoGAP_ARHGAP19 cd04392
RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
38-203 1.94e-08

RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239857  Cd Length: 208  Bit Score: 56.32  E-value: 1.94e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   38 QVLQsCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYvqDIHSVGSLCKLYFRELPNPLLT---YQLY 114
Cdd:cd04392    12 QIYQ-LIEYLEKNLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGF--HAHDCATVLKGFLGELPEPLLThahYPAH 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  115 EKFSD--------AVSAATDEERLIK-IHDVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQ 185
Cdd:cd04392    89 LQIADlcqfdekgNKTSAPDKERLLEaLQLLLLLLPEENRNLLKLILDLLYQTAKHEDKNKMSADNLALLFTPHLICPRN 168
                         170       180
                  ....*....|....*....|....*
gi 307344690  186 I-------ESACFSGTAAFMEVRIQ 203
Cdd:cd04392   169 LtpedlheNAQKLNSIVTFMIKHSQ 193
RhoGAP_OCRL1 cd04380
RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain ...
34-212 4.73e-08

RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239845  Cd Length: 220  Bit Score: 55.42  E-value: 4.73e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   34 FEVPQVLQSCTAFIERYGIVD-GIYRLSGVASN----IQRLRHEFDSEHVPDLTKepyvqDIHSVGSlCKLYF-RELPNP 107
Cdd:cd04380    48 LSIPKEIWRLVDYLYTRGLAQeGLFEEPGLPSEpgelLAEIRDALDTGSPFNSPG-----SAESVAE-ALLLFlESLPDP 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  108 LLTYQLYEKFSDAVsaATDEERLIKIhdVIQQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKqiE 187
Cdd:cd04380   122 IIPYSLYERLLEAV--ANNEEDKRQV--IRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDP--P 195
                         170       180
                  ....*....|....*....|....*
gi 307344690  188 SACFSGTAAFMEvRIQSVVVEFILN 212
Cdd:cd04380   196 RAGGKERRAERD-RKRAFIEQFLLN 219
RhoGAP_fRGD2 cd04399
RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ...
93-219 3.48e-06

RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239864  Cd Length: 212  Bit Score: 49.64  E-value: 3.48e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   93 VGSLCKLYFRELPNPLLTYQLYEKFSDAVSA------ATDEERLIKIHDVIQQLPPPHYRTLEFLMRHLSLLADycsITN 166
Cdd:cd04399    81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAyppsqeDSDTARIQGLQSTLSQLPKSHIATLDAIITHFYRLIE---ITK 157
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 307344690  167 M------HAKNLAIVWAPNLLRskqiesaCFSGTAAFMEVRIQSVVVEFILNHVDVLFS 219
Cdd:cd04399   158 MgeseeeYADKLATSLSREILR-------PIIESLLTIGDKHGYKFFRDLLTHKDQIFS 209
PHA03247 PHA03247
large tegument protein UL36; Provisional
888-1270 1.05e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 50.71  E-value: 1.05e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  888 SPMPSTLPRDK-AHHPLSGSPEENSSTATMAYMMATPARAEPSNSEA-SRV----LAEQPSAADFVAATLQRthrtnrpl 961
Cdd:PHA03247 2611 PAPPSPLPPDThAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApGRVsrprRARRLGRAAQASSPPQR-------- 2682
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  962 ppppsQRPAEQPPVVGQVQEApsiglnnshkvqGTAPAPERPPESR----AMGDPAPIFLSDGTAAAQCPMGASAPQPGL 1037
Cdd:PHA03247 2683 -----PRRRAARPTVGSLTSL------------ADPPPPPPTPEPAphalVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1038 PEKVRESSRAPPLHLRAESFPGHSCGFAAPV-PPTRTMESKMAAALHSSAADATSSSN---YHSFVPSSASVDDVMPVPL 1113
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAaGPPRRLTRPAVASLSESRESLPSPWDpadPPAAVLAPAAALPPAASPA 2825
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1114 PVSQPKHASQKIAyssfarPDVTAEPFGPENCLHFNMTPNCQFRPQsvPPHHnklEPHQVYGARSEPPASMGPRyntyVA 1193
Cdd:PHA03247 2826 GPLPPPTSAQPTA------PPPPPGPPPPSLPLGGSVAPGGDVRRR--PPSR---SPAAKPAAPARPPVRRLAR----PA 2890
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 307344690 1194 PGRNMSGHHSKPCSRveyvsslgSSVRNPCCPEDILPYPTIrRVQSLHAPPPsmiRSVPISRTEVPPDDEPAYCPRP 1270
Cdd:PHA03247 2891 VSRSTESFALPPDQP--------ERPPQPQAPPPPQPQPQP-PPPPQPQPPP---PPPPRPQPPLAPTTDPAGAGEP 2955
RhoGAP_p85 cd04388
RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present ...
37-204 2.90e-05

RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.


Pssm-ID: 239853  Cd Length: 200  Bit Score: 46.79  E-value: 2.90e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690   37 PQVLQSCTAFIERYGIVDGIYRLSGVASNIQRLRHEFDSEhVPDLTKEPYvqDIHSVGSLCKLYFRELPNPLLTYQLY-E 115
Cdd:cd04388    16 PPLLIKLVEAIEKKGLESSTLYRTQSSSSLTELRQILDCD-AASVDLEQF--DVAALADALKRYLLDLPNPVIPAPVYsE 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  116 KFSDAVSAATDEERLIKIHDVIQ--QLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESACFSG 193
Cdd:cd04388    93 MISRAQEVQSSDEYAQLLRKLIRspNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQPASSDSPEF 172
                         170
                  ....*....|.
gi 307344690  194 TAAFMEVRIQS 204
Cdd:cd04388   173 HIRIIEVLITS 183
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
891-1070 3.06e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 45.64  E-value: 3.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  891 PSTLPRDKAHHPLSGSPEENSSTATMAymmATPARAEPSNSEASRVLAEQPSAADFVAATLQRTHRTNRPLPPPPSQRP- 969
Cdd:PRK12323  381 PVAQPAPAAAAPAAAAPAPAAPPAAPA---AAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAa 457
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  970 --AEQPPVVGQVQEAPSIGLN---NSHKVQGTAPAPERPPESRAM-GDPAPIFLSDGTAAAQCPMGASAPQPG--LPEKV 1041
Cdd:PRK12323  458 paAAARPAAAGPRPVAAAAAAapaRAAPAAAPAPADDDPPPWEELpPEFASPAPAQPDAAPAGWVAESIPDPAtaDPDDA 537
                         170       180
                  ....*....|....*....|....*....
gi 307344690 1042 RESSRAPPLHLRAESFPGHSCGFAAPVPP 1070
Cdd:PRK12323  538 FETLAPAPAAAPAPRAAAATEPVVAPRPP 566
PHA03247 PHA03247
large tegument protein UL36; Provisional
732-1262 6.89e-04

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 44.54  E-value: 6.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  732 PSEEKLPSSYSSLTldKTCFQTDRPAEQFHPQ----INGL--------GNCNQPLPEAAAMGGPTQSNTTDSGEQLHQVD 799
Cdd:PHA03247 2503 PPDPDAPPAPSRLA--PAILPDEPVGEPVHPRmltwIRGLeelasddaGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEP 2580
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  800 LIGNSLHRNHISGDPEKARSTSAPLTDSEKS--------DDHGSFPEDHAGKSSVSTVSFLEQDQSPLHFSCGDQPLsyl 871
Cdd:PHA03247 2581 AVTSRARRPDAPPQSARPRAPVDDRGDPRGPappsplppDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA--- 2657
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  872 GTSVDKPHHSSELTDKSPMPSTL--PRDKAHHPLSGS---------PEENSSTATMAYMMATPAraePSNSEASRVLAEQ 940
Cdd:PHA03247 2658 PGRVSRPRRARRLGRAAQASSPPqrPRRRAARPTVGSltsladpppPPPTPEPAPHALVSATPL---PPGPAAARQASPA 2734
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  941 PSAADFVAATlqrthrTNRPLPPPPSQRPAEQPPVVGQVQEAPSiglnnshKVQGTAPAPERPPESRAMGDPAPIFLSDG 1020
Cdd:PHA03247 2735 LPAAPAPPAV------PAGPATPGGPARPARPPTTAGPPAPAPP-------AAPAAGPPRRLTRPAVASLSESRESLPSP 2801
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1021 TAAAQCPMGASAPQPGLPEKVRESSRAPPlhlRAESFPGHSCGFAAPVPPTRTMESKMAAALHSSAADATSSSnyhSFVP 1100
Cdd:PHA03247 2802 WDPADPPAAVLAPAAALPPAASPAGPLPP---PTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSP---AAKP 2875
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1101 SSASVDDVMPVPLPVSQPKHASQKIAYSSFARPDVTAEPFGPENCLHFNMTPNCQFRPQSVPPHHNKLEPHQVYGARSEP 1180
Cdd:PHA03247 2876 AAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690 1181 PASMGPRYNTYVAPGRnmsghhsKPCSRVEyVSSLGSSVRNPCCPEDILPYPTIRRVQS------LH---APPPsmirsV 1251
Cdd:PHA03247 2956 SGAVPQPWLGALVPGR-------VAVPRFR-VPQPAPSREAPASSTPPLTGHSLSRVSSwasslaLHeetDPPP-----V 3022
                         570
                  ....*....|.
gi 307344690 1252 PISRTEVPPDD 1262
Cdd:PHA03247 3023 SLKQTLWPPDD 3033
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
933-1073 8.36e-03

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 40.74  E-value: 8.36e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 307344690  933 ASRVLAeqPSAADFVAATLQRTHRTNRPLPPPPSQRPAeQPPVVGQVQEAPSIGLNNSH----KVQGTAPAPERPPESRA 1008
Cdd:PRK07764  359 CARMLL--PSASDDERGLLARLERLERRLGVAGGAGAP-AAAAPSAAAAAPAAAPAPAAaapaAAAAPAPAAAPQPAPAP 435
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 307344690 1009 MGDPAPIFLSDGTAAAQCPMGASAPQPGLPEKVRESSRAPPLHLRAESFPGHSCGFAAPVPPTRT 1073
Cdd:PRK07764  436 APAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAP 500
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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