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Conserved domains on  [gi|30409966|ref|NP_848486|]
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vexin [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Vexin super family cl48274
Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human ...
 42-120 3.61e-27

Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human homolog, C8orf46. Vexin is transiently expressed in differentiating progenitors in the developing central nervous system (CNS) and is required for neurogenesis in the neural plate and retina. This entry corresponds to a presumed SH3 domain.


The actual alignment was detected with superfamily member pfam15505:

Pssm-ID: 464753  Cd Length: 80  Bit Score: 98.78  E-value: 3.61e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409966    42 VVIESDLYPPPRPLELLpQRCERRD--TGDRRWLQTGRLQTARPPGAHPTKTPSRPVGISEPKTSNLCGNRAYGKSLIPP 119
Cdd:pfam15505   1 VVIESDLYAHRPLELLP-HRTDRRQvlYREGRVHRFGRLQNGRQPGPHPAKTPARPVGISEPKPSNLCGNRAYGKSLIPP 79


                  .
gi 30409966   120 V 120
Cdd:pfam15505  80 V 80
 
Name Accession Description Interval E-value
Vexin pfam15505
Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human ...
 42-120 3.61e-27

Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human homolog, C8orf46. Vexin is transiently expressed in differentiating progenitors in the developing central nervous system (CNS) and is required for neurogenesis in the neural plate and retina. This entry corresponds to a presumed SH3 domain.


Pssm-ID: 464753  Cd Length: 80  Bit Score: 98.78  E-value: 3.61e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409966    42 VVIESDLYPPPRPLELLpQRCERRD--TGDRRWLQTGRLQTARPPGAHPTKTPSRPVGISEPKTSNLCGNRAYGKSLIPP 119
Cdd:pfam15505   1 VVIESDLYAHRPLELLP-HRTDRRQvlYREGRVHRFGRLQNGRQPGPHPAKTPARPVGISEPKPSNLCGNRAYGKSLIPP 79


                  .
gi 30409966   120 V 120
Cdd:pfam15505  80 V 80
 
Name Accession Description Interval E-value
Vexin pfam15505
Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human ...
 42-120 3.61e-27

Vexin domain; Proteins containing this domain include Xenopus laevis Vexin and its human homolog, C8orf46. Vexin is transiently expressed in differentiating progenitors in the developing central nervous system (CNS) and is required for neurogenesis in the neural plate and retina. This entry corresponds to a presumed SH3 domain.


Pssm-ID: 464753  Cd Length: 80  Bit Score: 98.78  E-value: 3.61e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30409966    42 VVIESDLYPPPRPLELLpQRCERRD--TGDRRWLQTGRLQTARPPGAHPTKTPSRPVGISEPKTSNLCGNRAYGKSLIPP 119
Cdd:pfam15505   1 VVIESDLYAHRPLELLP-HRTDRRQvlYREGRVHRFGRLQNGRQPGPHPAKTPARPVGISEPKPSNLCGNRAYGKSLIPP 79


                  .
gi 30409966   120 V 120
Cdd:pfam15505  80 V 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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