NCBI Conserved Domain Search

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...

1474-2013

5.02e-11

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 69.13 E-value: 5.02e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1474 YTPENQHHPALPPLAAARRIDWGPAFGAAAEtyaemfrvdTEPLARLLRITGGLLDLAQAGGGFIDYHEAVSRLAEDLNG 1553
Cdd:COG3321  853 YPGRGRRRVPLPTYPFQREDAAAALLAAALA---------AALAAAAALGALLLAALAAALAAALLALAAAAAAALALAA 923

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1554 VPSLRHYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAA 1633
Cdd:COG3321  924 AALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALA 1003

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1634 CVGALERVDQAPVKDTAYAEHVAFVARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLL 1713
Cdd:COG3321 1004 LLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAA 1083

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1714 RVAAIPAAAAkTLEQARSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDAL 1793
Cdd:COG3321 1084 LALAAALAAA-ALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAA 1162

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1794 GETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIG 1873
Cdd:COG3321 1163 LAAALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAA 1242

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1874 AKSAERAGAVEELGVAVERHDGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLY 1953
Cdd:COG3321 1243 AAVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALA 1322

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1954 SAYAKARAQTGAGGTPPPAPAPLLVDVRALEARARSPGERHEPDPRTVRGRGEAYLRARG 2013
Cdd:COG3321 1323 AALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALA 1382

Streccoc_I_II

NF033804

antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins ...

453-552

2.87e-06

antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins with a glucan-binding domain, two types of repetitive regions, an isopeptide bond-forming domain associated with shear resistance, and a C-terminal LPXTG motif for anchoring to the cell wall. They occur in oral Streptococci, and tend to be major cell surface adhesins. Members of this family include SspA and SspB from Streptococcus gordonii, antigen I/II from S. mutans, etc.

Pssm-ID: 468188 [Multi-domain] Cd Length: 1552 Bit Score: 53.41 E-value: 2.87e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAgRPPTPANPTASSEP---PTPAG-------RPPTPAGRPPT 522
Cdd:NF033804  876 EPSKPEEPTYETEKPLEPAPVAPTYENEPTPPVKTPDQP-EPSKPEEPTYETEKplePAPVApsyenepTPPVKTPDQPE 954

                          90       100       110
                  ....*....|....*....|....*....|
gi 30984464   523 PANPTASSEPPTPNPEGAPAPSSNEQPPAA 552
Cdd:NF033804  955 PSKPVEPTYDPLPTPPVAPTPKQLPTPPAV 984

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

476-572

1.76e-04

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 (BAC70047.1) whose C-terminal region suggests restriction enzyme activity (PMID: 18456708), and with other proteins with unrelated C-terminal regions. A member protein was also identified in a kanamycin biosynthetic gene cluster (PMID:16766657), while N-terminal regions of two other member proteins were named Trypco1 in a bioinformatic study (PMID:32101166) of predicted bacterial conflict systems.

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 46.92 E-value: 1.76e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   476 ASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQP-----P 550
Cdd:NF041121   17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvrvpaP 96

                          90       100
                  ....*....|....*....|..
gi 30984464   551 AAASTDEATQKALDALRDRQPP 572
Cdd:NF041121   97 PALPNPLELARALRPLKRRVPS 118

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

454-545

5.53e-04

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, as described in Streptococcus pneumoniae, is a repetitive and highly variable protein, recognized by a conserved N-terminal domain and also by genomic location. This form, subgroup 2, is anchored covalently after cleavage by sortase at a C-terminal LPXTG site. The other form, subgroup 1, has variable numbers of a choline-binding repeat in the C-terminal region, and is also known as choline-binding protein A.

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.53 E-value: 5.53e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTassepPTPAGPTTASSEPPTPAGRPPTPagrPPTPANPTASSEPPTPAgrpPTPAGRPPTPaNPTASSEPP 533
Cdd:NF033839  281 QDTPKEPGN-----KKPSAPKPGMQPSPQPEKKEVKP---EPETPKPEVKPQLEKPK---PEVKPQPEKP-KPEVKPQLE 348

                          90
                  ....*....|..
gi 30984464   534 TPNPEGAPAPSS 545
Cdd:NF033839  349 TPKPEVKPQPEK 360

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

455-543

1.85e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.85e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTA-SSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPtassEPPTPAGRP----PTPAGRP-PTPANPTA 528
Cdd:NF033839  290 KKPSAPKPGmQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQP----EKPKPEVKPqletPKPEVKPqPEKPKPEV 365

                          90
                  ....*....|....*
gi 30984464   529 SSEPPTPNPEGAPAP 543
Cdd:NF033839  366 KPQPEKPKPEVKPQP 380

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

453-574

1.95e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.95e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPagptTASSEPPTPAGRP-PTPAGR----PPTPANPTASSEP----PTPAGRP----PTPAGR 519
Cdd:NF033839  302 SPQPEKKEVKPEPETPKP----EVKPQLEKPKPEVkPQPEKPkpevKPQLETPKPEVKPqpekPKPEVKPqpekPKPEVK 377

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   520 P-PTPANPTASSEPPTPNPEGAPAPssnEQPPAAASTDEATQKAlDALRDRQPPEP 574
Cdd:NF033839  378 PqPETPKPEVKPQPEKPKPEVKPQP---EKPKPEVKPQPEKPKP-EVKPQPEKPKP 429

KREPA2

cd23959

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...

453-576

2.42e-03

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of the parasitic protozoan's KREPA RNA editing catalytic complex (RECC). Kinetoplastid RNA editing (KRE) proteins occur as pairs or sets of related proteins in multiple complexes. KREPA complex is composed of six components (KREPA1-6), which share a conserved C-terminal region containing an oligonucleotide-binding (OB)-fold-like domain. KREPAs are responsible for the site-specific insertion and deletion of U nucleotides in the kinetoplastid mitochondria pre-messenger RNA. Apart from the conserved C-terminal OB-fold domain, KREPA1, KREPA2, and KREPA3 contain two conserved C2H2 zinc-finger domains. KREPA2 and kinetoplastid RNA editing ligase 1 (KREL1) are specific for ligation post-U-deletion and are paralogous to KREL2 and KREPA1 that are specific for ligation post-U-insertion. KREPA2, is critical for RECC stability and KREL1 integration into the complex.

Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 43.32 E-value: 2.42e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  453 EPPTPAGPTTASSEPPTPagPTTASSEPPTPaGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEP 532
Cdd:cd23959  128 ETHKTAQVAPPKAEPQTA--PVTPFGQLPMF-GQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAP 204

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 30984464  533 PTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPC 576
Cdd:cd23959  205 SSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPTHAC 248

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

474-546

2.74e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.96 E-value: 2.74e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464    474 TTASSEPPTPAGRPPTPAgrPPTPANPTASSEPPTPAGRPPtpaGRPPTPANPTASSEPPTPN-PEGAPAPSSN 546
Cdd:TIGR00601   81 TGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSvPSSGSDAAST 149

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

494-575

2.97e-03

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 43.07 E-value: 2.97e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   494 PPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPE 573
Cdd:NF041121   16 GRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPA 95


                  ..
gi 30984464   574 PP 575
Cdd:NF041121   96 PP 97

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

390-595

3.19e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.22 E-value: 3.19e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   390 TPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAgpTTASSEPPT 469
Cdd:NF033839  283 TPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPK--PEVKPQPEK 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   470 PAGPTTASSEPPTPAGRP----PTPAGRP-PTPANPTASSEP--PTPAGRP----PTPAGRP-PTPANPTASSEPPTPNP 537
Cdd:NF033839  361 PKPEVKPQPEKPKPEVKPqpetPKPEVKPqPEKPKPEVKPQPekPKPEVKPqpekPKPEVKPqPEKPKPEVKPQPEKPKP 440

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464   538 EGAPAPSSN--EQPPAAASTDEATQKALDALRDRQPPEP----PCGSLTELLGRHPDTDGGVSR 595
Cdd:NF033839  441 EVKPQPEKPkpEVKPQPETPKPEVKPQPEKPKPEVKPQPekpkPDNSKPQADDKKPSTPNNLSK 504

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

400-603

5.46e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.45 E-value: 5.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   400 EQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPagptTASSE 479
Cdd:NF033839  359 EKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKP----EVKPQ 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   480 PPTPAgrpPTPAGRPPTPaNPTASSEPPTPAgrpPTPAGRPPTPaNPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEAT 559
Cdd:NF033839  435 PEKPK---PEVKPQPEKP-KPEVKPQPETPK---PEVKPQPEKP-KPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDK 506

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 30984464   560 QKALDALRDRQPPEPPCGSLtellgrhPDTdGGVSRLAAHEAGI 603
Cdd:NF033839  507 QPSNQASTNEKATNKPKKSL-------PST-GSISNLALEIAGL 542

Name

Accession

Description

Interval

E-value

PHA03247

large tegument protein UL36; Provisional

1-3288

0e+00

large tegument protein UL36; Provisional

Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 4248.23 E-value: 0e+00

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464     1 MAQRGDRGIVVTGARNQFAPDLEPGGAVSCMRSSLSFLSLVFDAGLRDALSAEAVDGCLVEGGAWTRASAGSDPPRMCSA 80
Cdd:PHA03247    1 MARRGDRGIVVTGARNQFAPDLEPGGAVSCMRSSLSFLSLVFDAGLRDALSAEAVDGCLVEGGAWTRASAGSGPPRMCSI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    81 VELPTFLEYPSGRGLRCVFSRLYGEVAFFGKPAPGLLETQCPAHDFFAGPWARRPLSYTLVTIGALGMGLYRDGDEAYLF 160
Cdd:PHA03247   81 VELPTFLEYPSGRGLRCVFSRVYGEVAFFGEPAPGLLETQCPAHDFFAGPWARRPLSYTLVTIGALGMGLYRDGDTAYLF 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   161 DPHGLREGSPAFVAKIRAGEVYTYLTYYTQEHPEARWAGAMVFFVPAGPGPPATAALTAAVLQLYGASETYLQDEPFVER 240
Cdd:PHA03247  161 DPHGLREGSPAFVAKVRAGEVYTYLTYYTQDHPEARWAGAMVFFVPSGPGPAAPADLTAAALHLYGASETYLQDEPFVER 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   241 RVVVSHPLRGDDVAPAGAVAVGEEAGRAPAAARKAPPQTPPPKAAAPEPAGAADAGVWGAA---LAGAPLALPAPAPSDS 317
Cdd:PHA03247  241 RVVISHPLRGDIAAPAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAAlagAPLALPAPPDPPPPAP 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   318 AGGDDAEDDEDGAMEVVSPLPRPNQHYPLGFSKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSG 397
Cdd:PHA03247  321 AGDAEEEDDEDGAMEVVSPLPRPRQHYPLGFPKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRKRRSARHAATPFARGPG 400

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   398 GDEQTRPaagpRPPTPASrpptpgapptpgapptpgapptpgapptpagpttassepptpagpttassepptpagpttas 477
Cdd:PHA03247  401 GDDQTRP----AAPVPAS-------------------------------------------------------------- 414

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   478 sePPTPaGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPtassepptpnpegapapssneqpPAAASTDE 557
Cdd:PHA03247  415 --VPTP-APTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPATE-----------------------PAPDDPDD 468

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   558 ATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAGIAREVTECSRLTINALRSPFPGSPGLLQHCIVFLF 637
Cdd:PHA03247  469 ATRKALDALRERRPPEPPGADLAELLGRHPDTAGTVVRLAAREAAIAREVAECSRLTINALRSPFPASPGLLQHCVIFLF 548

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   638 ERVLAFLIENGARTHAGAGAEGPASGLLDLTVSLLPRRTAVGDFLASTRMTLADVAAHLPLIQPVLDEGSIVGRLALAKL 717
Cdd:PHA03247  549 ERVLAFLIENGARTHAGAGAEGPAAALLDLTLSLLPRRTAVGDFLASTRMTLADVAAHLPLIQPVLDEGSGVGRLALAKL 628

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   718 VLVARDVIRTTDDFHGELAELERRLRATPPTEVYARLSEWLLERSKAGPDTLFAPATPTHPEPLLQRIQALAGFARREEV 797
Cdd:PHA03247  629 VLVARDVIRETDAFHGELAELERQLRATPPAEVYARLSEWLLERSRAGPDTLFAPATPTHPEPLLQRVQALAGFARGEEI 708

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   798 RAAAEDREVRGALDALARGVDAVARRSGPLTVAAVSPEEPGEGGGRPHPLSPEAIRVRLEQLRADGQKAVEGATREYFHR 877
Cdd:PHA03247  709 RAAAEDREVRGALDALARGVDAVARRAGPLTVAPAPAAPGGQGAPRPPPLSPEAIRVRLEQVRAQGQRAIEGAVKEYFHR 788

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   878 GAVYSAKALLAGDARDRRYHVASAPVVPVVQLLESLPAFDAHVQEVARRARVPAPPPLATSPPAELLRELVQRGRDLEAP 957
Cdd:PHA03247  789 GAVYSAKALLAGDARDRRFHVASAPVVPVVQLLESLPAFDAHVREVAQRARVPAPPPLATSPQAILLRELLQRGQDLEAP 868

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   958 ADLAAWLASLGDAAGQGLVVRKELDELAQAIYKINERTVRRSSGLAELERFEALDAALRGELESEAAFEPGGGDGAAAGG 1037
Cdd:PHA03247  869 ADLAAWLASLGDAAGQGLVERKELDELARAIHKINERQVRRSSGLAELERFEALDAALRQELESEAAFVPAPGAAPYADA 948

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1038 --LPAETRRLAEDALHQAKAMAAAKLTDELSPEARERLAARVRAIEAMLEEARARAEAAKAALARFFQKLQGVLRPLPDF 1115
Cdd:PHA03247  949 ggLSPETRRLAEDALRQAKAMAAAKLTDELSPEARERLRARARAIEAMLEEARERAEAARAARERFFQKLQGVLRPLPDF 1028

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1116 GGLRVAPAVLATLRADIPGGWTCLPDAAQAAPPEVRAALRADLWGLLGQYRGALEHPTADTAAALSGLHPNFAEVLRDLF 1195
Cdd:PHA03247 1029 GGLRAAPAVLATLRADLPGGWTDLPDAAQAAPPEVRAALRADLWGLLGQYREALEHPTPDTATALSGLHPNFVEVLRDLF 1108

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1196 PAAPETPLLVSFFSDHAPRVAQAVSEAIAAGSAAVATASPESTVEAAVRAQGVLADTVAALSPAVRDPACPLAFLVALAD 1275
Cdd:PHA03247 1109 PAAPETPLLVQFFSDHAPRIARAVSEAINAGSAAVATASPESTVDAAVRAHGVLADAVAALSPAVRDPACPLAFLVALAD 1188

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1276 SAAGYVKATRLALGARRAIARLGALGAAAADLAVAVRRENPQADGDRAALLEAAARAVEAARAGLAACEGEFGGLLHAEG 1355
Cdd:PHA03247 1189 SAAGYVKATRLALDARRAIARLGALGAAAADLAVAVRRENPQAEGDRAALLEAAARAVTAAREGLAACEGEFGGLLHAEG 1268

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1356 SAGDPSPSGRALQELGKVVAATRRRADELEAAAADLAEKLADRDARAGRERWAADVEAALDRVENRAEFDAVELRRLQAL 1435
Cdd:PHA03247 1269 SAGDPSPSGRALQELGKVVGATRRRADELEAAAADLAEKMAARRARASRERWAADVEAALDRVENRAEFDAVELRRLQAL 1348

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1436 AAQNKYNPRDFRKRAEQALAANAKTATLALEAAFAFNPYTPENQHHPALPPLAAARRIDWGPAFGAAAETYAEMFRVDTE 1515
Cdd:PHA03247 1349 AATHGYNPRDFRKRAEQALAANAKTATLALEAAFAFNPYTPENQRHPMLPPLAAIHRIDWGPAFGAAAETYAEMFRVDTE 1428

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1516 PLARLLRITGGLLDLAQAGGGFIDYHEAVSRLAEDLNGVPSLRHYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLD 1595
Cdd:PHA03247 1429 PLARLLRLAGGLLELAQAGGGFIDYHEAVSRLAEDLNGVPSLRRYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLD 1508

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1596 LAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAACVGALERVDQAPVKDTAYAEHVAFVARRDLGEAKDALVRAKQ 1675
Cdd:PHA03247 1509 LAAAAEQTSRLRNDPAAAAELVRTGVTLACPSEDALAACVGALERVDQSPVKDTAYAEYVAFVARRDLAEAKDALVRAKQ 1588

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1676 QRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTLEQARSVAEIVDQIELLLEQTEKAAELDQA 1755
Cdd:PHA03247 1589 QRAEATDRVTAALREALAAHERRAQSEAESLANLKTLLRVAAIPATAAKTLDQARSVAEIVDQIELLLEQTEKAAELDVA 1668

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1756 AVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDALGETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSPEAL 1835
Cdd:PHA03247 1669 AVDWLEHARRVFEAHPLTAARGGGPDPLARLHARLDALGETRRRTEALRRSLEAAEAEWDEVWGRFGRVRGGAWKSPEAL 1748

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1836 GAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIGAKSAERAGAVEELGVAVERHDGLLARLREDVVARVPWEMNAD 1915
Cdd:PHA03247 1749 RAAREQLRALQTATNTVLGLRADAHYERLPAKYQGALGAKSAERAGAVEELGAAVARHDGLLARLREEVVARVPWEMNAD 1828

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1916 ALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQtgAGGTPPPAPAPLLVDVRALEARARSPGERHE 1995
Cdd:PHA03247 1829 ALGRLLAEFDALAGDLAPWAVDEFRGARALVQHRLGLYSAYAKARAQ--TGAGGAAPPAPLLVDLRALEARARSPPERHE 1906

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1996 PDPRTVRGRGEAYLRARGDPGPLELREATSDLDLPFATSYLTPDGTPLQYVVCFPAVTDKLGALLMRAEAARARPPLPPE 2075
Cdd:PHA03247 1907 PDPRMVRRRGEAYLRASGDPGPLELREATSELDLPFATSYLAPDGTPLQYALCFPAVTDKLGALLMRPEAARARPPLPTE 1986

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2076 GLDSTQTLAAMCTVPLITQLQLALSDAQGDGFRLFGRFVRHRQPGWRDSAAAAAELYAALTATTLTREFGCRWDELGWER 2155
Cdd:PHA03247 1987 GLESTQTLAAMCTVPLITRLQLALSDAQGAGFRLFGRFVRHRQPAWRDSMAAAAELYAALVATTLTREFGCRWDELGWAR 2066

                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2156 GAPAPAPLAEPAGTRRPRVTFNMNDVMVALVAGTPEHIYNFWRLDLVLQHEYMHLTLPAAWETGAGAILFVQRLTPHPSP 2235
Cdd:PHA03247 2067 GAAAPAPLAEPAGSRRPRVTFNENDVMVALVAGTPEHIYNFWRLDLVLQHEYMHLTLPAAWETGAGSILFVQRLTPHPDP 2146

                        2250      2260      2270      2280      2290      2300      2310      2320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2236 EVRVLPAVAAGPPPATGLLFGTRLADWRHGKLSSSDPLAPWRAAPELAAGGAAAALGGLGGPRALVAVSVLGRMCLPSAA 2315
Cdd:PHA03247 2147 EVRVLPAVPAGPPPATGLLFGTRLADWRHGKLSESDPLAPWRAAPELAAGGAAAALGGLSGPRALVAVSVLGRMCLPSAA 2226

                        2330      2340      2350      2360      2370      2380      2390      2400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2316 LAALWSCMFPEGYSEYDSLDALLAARLGAGRPPDPQGGREDVPAPPAHALYRPSGQRVLVRGGAPDPAARVTVMDLVLAA 2395
Cdd:PHA03247 2227 LAALWSCMFPDGYSEYDSLDALLAARLGSGRTPDPQGGREDSPAPPAHALYRPSGQRVLVRGGAPDPAARVTVMDLVLAA 2306

                        2410      2420      2430      2440      2450      2460      2470      2480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2396 TLLGAPVVVALRSDPAFSKGSELELCVTLFDSRERGADAALREVVSSDVETWATDLLHADLNAIENACLAAQLPALSALI 2475
Cdd:PHA03247 2307 TLLGAPVVVALRSDPAFSRGSELELCVTLFDSRARGADAALREVVSSDVETWAVDLLHADLNPIENACLAAQLPALSALI 2386

                        2490      2500      2510      2520      2530      2540      2550      2560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2476 AARPLAGSPPCLVLVDISMAPLFVLWEQPDPPGPPDVRFVGSDEIEELPFVSPGADVLAGLAAEGDPFFARTILGAPFSL 2555
Cdd:PHA03247 2387 AARPLARSPPCLVLVDISMAPLFVLWEQPDPPGPPDVRFVGSEEIEELPFVSPGGDVLAGLAADGDPFFARTILGAPFSL 2466

                        2570      2580      2590      2600      2610      2620      2630      2640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2556 SRLLHETFPGAPVHRRPPEARFPFAAGAGPDPGGGAPPDPEAPPPPSHQTPAILPDEPVGETVHPRMLTWIRGLEELASD 2635
Cdd:PHA03247 2467 SLLLGELFPGAPVYRRPAEARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEPVHPRMLTWIRGLEELASD 2546

                        2650      2660      2670      2680      2690      2700      2710      2720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2636 DAGDPPPPLPPAARPAAPDRSVPPPRPAPRPSEPAVQSRARRPDAPPQSARPRTPRDDPGPPAApsTLPPSPPPPAPHPP 2715
Cdd:PHA03247 2547 DAGDPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRG--PAPPSPLPPDTHAP 2624

                        2730      2740      2750      2760      2770      2780      2790      2800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2716 DPPPPDPSPRPNELGGGETaaapsapdppppqtVPAPERPRDDRAPAPGRVSLPRRASRQGRPA-PSSPLQRPRRRAARP 2794
Cdd:PHA03247 2625 DPPPPSPSPAANEPDPHPP--------------PTVPPPERPRDDPAPGRVSRPRRARRLGRAAqASSPPQRPRRRAARP 2690

                        2810      2820      2830      2840      2850      2860      2870      2880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2795 AVGSLTNLADPHPPGPETPTptsptanphattasatpapppvaatgPTRPTSPATPTPTVAAAGRASappapaapAAPAA 2874
Cdd:PHA03247 2691 TVGSLTSLADPPPPPPTPEP--------------------------APHALVSATPLPPGPAAARQA--------SPALP 2736

                        2890      2900      2910      2920      2930      2940      2950      2960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2875 PAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPVVVPAPTATLTATTTT 2954
Cdd:PHA03247 2737 AAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAA 2816

                        2970      2980      2990      3000      3010      3020      3030      3040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2955 SPAPAATPASPVPTPTSSLPTPPSKPPAFFQPSLATGGSVAPGGDFRRRAPSRPTAAVPAAPSRPPARRLARPAVSRSTE 3034
Cdd:PHA03247 2817 ALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896

                        3050      3060      3070      3080      3090      3100      3110      3120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  3035 SFALPPDELARPRTPEAPAPPTETEEAPVAERPAPPEPPQGRPPSPAAPDAGPAAASGPSGGVPAPRLGALVPGRVAVPR 3114
Cdd:PHA03247 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPR 2976

                        3130      3140      3150      3160      3170      3180      3190      3200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  3115 RQIPPPA-PPREIPAPSPPPPRSHAPRVSSWASSLALHEEPDAGPVSLKQTLWPPDELDDASDDSSLDSDPERLDLGSLD 3193
Cdd:PHA03247 2977 FRVPQPApSREAPASSTPPLTGHSLSRVSSWASSLALHEETDPPPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALD 3056

                        3210      3220      3230      3240      3250      3260      3270      3280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  3194 PETDPETDPFAHPPDPRAPEAGDRASPSSYFGPPPLSANAALSRRYVRSTGRSALAVLIEACWRIRRQLRMTRHALLNRS 3273
Cdd:PHA03247 3057 PLPPEPHDPFAHEPDPATPEAGARESPSSQFGPPPLSANAALSRRYVRSTGRSALAVLIEACRRIRRQLRRTRHALLDRS 3136

                        3290
                  ....*....|....*
gi 30984464  3274 GAVLTGLYHVRMLLG 3288
Cdd:PHA03247 3137 GAVLTGLYHVRMLLG 3151

PHA03246

large tegument protein UL36; Provisional

6-2539

0e+00

large tegument protein UL36; Provisional

Pssm-ID: 223020 [Multi-domain] Cd Length: 3095 Bit Score: 922.84 E-value: 0e+00

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464     6 DRGIVVTGARNQFAPDLEPGGAVSCMRSSLSFLSLVFDAGLRDALSAEAVDGCLVEGGAWTRASAGSDPPRMCSAVELPT 85
Cdd:PHA03246   73 DFTIVAVGIRNQFAPDLSPGSSVSCLRSSLAFLRIVFAYGLDTVLSADAIDRLLLQGKDWTIHTSDDGVYTTCVPHDLPN 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    86 FLEYPSGRGLRCV-FSRLYGEVAFF-GKPAPGLLETQCPAHDFFAGPWA-RRPLSYTLVTIGALGMGLYRDGDEAYLFDP 162
Cdd:PHA03246  153 RILSKDPGGNLCVaFSSSYGESEFYlDENTPTILDTQISARTFIERVWKqKRGDIYCLIVIGVLGIGVYRSEDGIYIFDP 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   163 HGLREGSPAFVAKIRAGEVYTYLTYYTQEHPEARWAGAMVFFVPAGPGPPATAALTAAVLQLYGASETYLQ----DEPfv 238
Cdd:PHA03246  233 HGHGHIGQACIVRVSEGYFYQYLTSYADPSGMPDWSATFVYFVSTASSAPPKEEIISAVSRLYGTADIVLDlgraDEE-- 310

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   239 ERRVVVSHplrgdDVAPagavavgeeagrapaaarkappqtpppkaaapepagaadagvwgaalagaplalpapapsdsa 318
Cdd:PHA03246  311 DNLKVVSA-----DFDP--------------------------------------------------------------- 322

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   319 ggddaeddedgamevvSPLPRPNQ-HYPLGFSKRR-RPTWTPPSSLEDLSAgrhhpkraslptrtrrsarHAATPF--SR 394
Cdd:PHA03246  323 ----------------PSRPQPWQtKIVIGTADSYaDSSPKLHSESTDLTP-------------------HEHGEYdpST 367

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   395 GSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAG--PTTASSEPPTPAG 472
Cdd:PHA03246  368 LVGGASTNINISDPPARTDCRRYSEGSVIHESVDSHIEDVTEATSVVAAWSDAFSDISEDYSHLTrpDLPATAHDVSKNG 447

                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   473 PTTASSEPPTPAG---RPPTPAGRPPTpANPTASSEPPT--PAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSS-- 545
Cdd:PHA03246  448 HDTKSDRRSRGSNsrhKRRRPSWTPPS-SSENVSSDGPTfsQSRKPSRKSKRALDLDYGHLSNEPSDVDGENSDSPAGai 526

                         570       580       590       600       610       620       630       640
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   546 ---------NEQPPAAASTDEATQKALdaLRDRQP--PEPPCGSLTELL--GRHPDTDGGVSRLAAHEAGIarEVTECS- 611
Cdd:PHA03246  527 snipdnvsfNEFISSQARAEDSIEHLS--LRNRPVfnPHTVTGNLDNTLrdSLWNDEYSGSYPLSDISDMI--DDITESi 602

                         650       660       670       680       690       700       710       720
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   612 ----RLTINaLRSPFPGSPGLLQHCIVFLFERVLAFLIENGARTHAGAGAEGPASgLLDLTVSLlPRRTAVGDFLASTRM 687
Cdd:PHA03246  603 adgmRLVVH-TSHRGDYDGGLLDVCIMDVFTRLFNYIIENGARTTTDRASVVEPE-MAALTKAF-TTPSHFSTFISSTGM 679

                         730       740       750       760       770       780       790       800
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   688 TLADVAAHLPLIQPVLDEGSIVGRLALAKLVLVARDVIRTTDDFHGELAELERRLRATPPTEVYARLSEWLLERSKAGPD 767
Cdd:PHA03246  680 SLSEASESADLIESVLTENSKIGKLALSKLTLVALEVEEATDTLHKSLDAIEREASTADPDRIYERMATVLVDTFYRNSG 759

                         810       820       830       840       850       860       870       880
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   768 TLFAPATPTHPE-PLLQRIQALAGFARREEVRAAAEDREVRGALDALARGVDAVARRSGPLTVAAVSPEEPGEGGGRPHP 846
Cdd:PHA03246  760 KLYSETTSYNSDqTLTDRVVSLCEFIRDRENVATRKAELILAEIEALDAGVRWMNTKFDAFIMGGSGGMSPAKGLSAIAK 839

                         890       900       910       920       930       940       950       960
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   847 LSPEAIRVRLEQLRADGQKAVEGATREYFHRGAVYSAKALLAGDARDRRYH-VASAPVVPVVQLLESLPAFDAHVQEVAR 925
Cdd:PHA03246  840 TSTDVVTQRLESIGKAAIDIVGNALREYYLKCALYSAKALRADMKETSRFKiVVTEQLEKMTRLLSSLSVIDDVILLIAS 919

                         970       980       990      1000      1010      1020      1030      1040
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   926 RARVPAPPPLATSPPAELLRELVQRGRDLEAPADLAAWLASLGDAAGQGLVVRKELDELAQAIYKINERTVRRSSGLAEL 1005
Cdd:PHA03246  920 RSDARVPVPVSKALESQLLGDLLEIGSHLDVPENLVTWKGLMVSVQTGGWISRRELDLLLKEVDAVNDNAARRETALTEL 999

                        1050      1060      1070      1080      1090      1100      1110      1120
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1006 ERFEALDAALRGELESEAAFEPGGGDgaaagglpaETRRLAEDALHQAKAMAAAKLTDELSPEARERLAARVRAIEAMLE 1085
Cdd:PHA03246 1000 ERLHELESRIASYTDLETTVDLQKLD---------EALKLANSIVKLTKGLDGAKLASSLSSDIREKIRQKRSETETLIA 1070

                        1130      1140      1150      1160      1170      1180      1190      1200
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1086 EARARAEAAKAALARFFQKLQGVLRPLPDFGGLRVAPAVLATLRADIPGGWTCLPDAAQAAPPEVRAALRADLWGLLGQY 1165
Cdd:PHA03246 1071 RLSARYAEVKAAVDGLYSSIRKLLRPLQNFAGLRALDSTVKTITDSIPPGMGSFESFLASAPPDVIGALRSDLWVLFTQY 1150

                        1210      1220      1230      1240      1250      1260      1270      1280
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1166 RGALEHPTADTAAALSGLHPNFAEVLRDLFPAAPETPLLVSFFSDHAPRVAQAVSEAIAAGSAAVATASPESTVEAAV-- 1243
Cdd:PHA03246 1151 KTILSRPSTGTAAELSGLGGPFALAIRVILGPEGEYPAASVFFGKHADVLSAALAAAASEPMSVEKTSAAVSVLKEAIsd 1230

                        1290      1300      1310      1320      1330      1340      1350      1360
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1244 --RAQGVLADT-VAALSPAVRDPAcpLAFLVAL---ADSAAGYVKATRLALGARRAIARLGALGAAAADLAVAVRRENPQ 1317
Cdd:PHA03246 1231 inRADATIPQQgIMADLSTERADA--FSFLHALlsdAEGAADVASRGAYLSTLIRTVRDSLEAVIDSITKIKSLDPKTYT 1308

                        1370      1380      1390      1400      1410      1420      1430      1440
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1318 ADGDRAAlleaaaraveaaragLAACEGEFGgllHAEGSAGDPSPSGRALQ---------------ELGKVVAATRRRAD 1382
Cdd:PHA03246 1309 YNTDASV---------------IVSAKAEVS---AATQQAGDCKDALTALEnepltynphiqrkiaELNKLIESVNQRVG 1370

                        1450      1460      1470      1480      1490      1500      1510      1520
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1383 ELEAAAADLAEKLADRDARAGRERWAADVEAALDRVENRAEFDAVELRRLQALAAQNKYNPRDFRKRAEQALAANAKTAT 1462
Cdd:PHA03246 1371 ELDIALQTYERNRISAERSRSEDLWTSSITSLLVNAEIKSEFDAMEINSLEETARNAGYDTIRFKSRAEKIVSAHARVVE 1450

                        1530      1540      1550      1560      1570      1580      1590      1600
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1463 LALEAAFAFNPYTPENQHHPALPPLAAARRIDWGPAFGAAAETYAEMFRVDTEPLARLLRITGGLLDLAQAGGGFIDYHE 1542
Cdd:PHA03246 1451 NAIETVLKFNPYSTTNIIHGLKPPIAALKNITWGDAFFAAAPYYTKLFGVNCDVLISLLKILFAILRHASAHPGNLDYYF 1530

                        1610      1620      1630      1640      1650      1660      1670      1680
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1543 AVSRLAEDLNGVPSLRHYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTVRLRgDPAAAAELVRTGVT 1622
Cdd:PHA03246 1531 LVGEIESDLRAIPSLAKYVDFYRRGHDSFEGFLARLEQMRVEALHASGRVSIEISDALETLARTH-SPEGARRALEYGVS 1609

                        1690      1700      1710      1720      1730      1740      1750      1760
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1623 LACPSEDALAACVGALERVDQAPVKDTAYAEHVAFVARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSE 1702
Cdd:PHA03246 1610 IVIPSANTIMSIADALQKEKITELDGTAYAEYSAHILRRDNDAIKSITQRVTTAIEAAKSRGESILKDLAEASYAADRET 1689

                        1770      1780      1790      1800      1810      1820      1830      1840
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1703 AESLANLKTLLRVAAIPAAAAKTLEQARSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSpDP 1782
Cdd:PHA03246 1690 AEQLANLKNLLRLVAMPAHIAKAIDKAETANDIVTQAALLLTKVEETKELDTQTVEWLKHAESVIDSHDLTVRIDES-GP 1768

                        1850      1860      1870      1880      1890      1900      1910      1920
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1783 LARLHARLDALGETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYP 1862
Cdd:PHA03246 1769 MTIYAERIDALVRLENRLAELKSELALAEVAWDDTWSTFIHDKDRIDKSSEGFSAARESAARAKVSTNAINALRNNAEYN 1848

                        1930      1940      1950      1960      1970      1980      1990      2000
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1863 RLPAKYQGAIGAKSAERAGAVEELGVAVERHDGLLARLrEDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGA 1942
Cdd:PHA03246 1849 RLPAKIIGLIDSKYRDRTVVLDAFLDSMKEIEDTQKQM-EILCSKIPLTFSLNDLRAISSQFDDIAKRLPKWYVKQVGRY 1927

                        2010      2020      2030      2040      2050      2060      2070      2080
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  1943 RALVQHRLGLYSAYAKAraqtgaGGTPPPAPAPLLVDVRALEArarspGERHEPDPRTV----RGRGEAYLRARgdpGPL 2018
Cdd:PHA03246 1928 SRLIKLRLALYAAYSNA------STGPIGDPPLLPFDTGRANI-----AANMAPSVGLVdrylKHRVAAWIRPK---VVA 1993

                        2090      2100      2110      2120      2130      2140      2150      2160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2019 ELREATSDLDLPFATSYLTPDGTPLQYVVCFPAVTDKLGALLMRAEAARARPPLPPEGLDSTQTLAAMCTVPLITQLQLA 2098
Cdd:PHA03246 1994 TLQEAFSEIDMPGLTTYLDSTDTPLRYSICYRTVGEKLAACLCEPSAVNIKPRIPTNLISTVEMESAAGMLNDIMILRLG 2073

                        2170      2180      2190      2200      2210      2220      2230      2240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2099 LSDAQGDGFRLFGRFVRHRQPGW--RDSAAAAAELYAALTATTLTREFGCRWDELGWERGAPAPAPLA------EPAGTR 2170
Cdd:PHA03246 2074 FVQACADRFQLFTKYVRTGIHDWspDYCIKAHGTIYCALIAITLTRKTGSNLSDIYFIPGQYGPTIDKkelkkfAANGRR 2153

                        2250      2260      2270      2280      2290      2300      2310      2320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2171 RPRVTFNMNDVMVALVAGTPEHIYNFWRLDLVLQHEYMHLTLPAAWETGAGAILFVQRLTPH------PSPEVRVLPAVA 2244
Cdd:PHA03246 2154 RQVVRLDPADVMVTIMACTPGHVLTFSKLDLINQYDFMDKTLYNVLTDSISTVAFVNCLSTQlskdgkVDPNCRPLSLTG 2233

                        2330      2340      2350      2360      2370      2380      2390      2400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2245 AGPPPATGLLFGTRLADWRHGKLSSSDPLAPWRAApELAAGGAAAALGGLGGPRALVAVSVLGRMCLPSAALAALWSCMF 2324
Cdd:PHA03246 2234 GEWDPSGGSLFAIRYSDWKQGRLSDTDPLKPWEDI-SGDEGAGLAKIRAVVPSSLLTTTTVLARMCIPPTALAVMWSSLL 2312

                        2410      2420      2430      2440      2450      2460      2470      2480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2325 PEGYSEY-DSLDALLAARLGAGRPPDPQGGREDVPA-------PPAHALYRPSGQRV--LVRGGAPDPAARVTVMDLVLA 2394
Cdd:PHA03246 2313 PDGIEQTcKSYDDVVTARGDGASTLDVTTSTIDHTGvkniqtnLDCPNLYEYTGTATtfTVVSTPPSRVLKVNAMDIAAC 2392

                        2490      2500      2510      2520      2530      2540      2550      2560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  2395 ATLLGAPVVVALRSDPAFSKGSELELCVTLFDSRErGADAALRE--VVSSDVETWATDLLHADLNAIENACLAAQLPALS 2472
Cdd:PHA03246 2393 ATLFGARIVIAAECPEAYSSDSGLSLCIRLFDSRS-GSKGCFLEpgAVSSDITSWGAKLLAADSNPIENACLGQQLEHLS 2471

                        2570      2580      2590      2600      2610      2620
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464  2473 ALIAARPLAGSPPCLVLVDISMAPLFVLWEQPDPPGPPDVRFVGSDE--IEELPFVSPGADVLAGLAAE 2539
Cdd:PHA03246 2472 HLIASKPLSSAPPCLVIVDAGMVPVKVLWAKEELDPIPIIRLTSADDalISELPYIDAGIRGETGADFQ 2540

Herpes_UL36

pfam03586

Herpesvirus UL36 tegument protein; The UL36 open reading frame (ORF) encodes the largest ...

1405-1654

1.55e-92

Pssm-ID: 427378 [Multi-domain] Cd Length: 251 Bit Score: 301.01 E-value: 1.55e-92

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   1405 ERWAADVEAALDRVENRAEFDAVELRRLQALAAQNKYNPRDFRKRAEQALAANAKTATLALEAAFAFNPYTPENQHhpAL 1484
Cdd:pfam03586    3 ERWRSDIRALLERDEDDGEFDLDELDRLRDEAETGGYDAVDLIKRARQVVDARAQLGLRALETVFAFNPYTPQNSQ--AL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   1485 PPLAAARRIDWGPAFGAAAETYAEMFRVDTEPLARLLRITGGLLDLAQAG-GGFIDYHEAVSRLAEDLNGVPSLRHYVPF 1563
Cdd:pfam03586   81 PPLALLESITWIDAFPGAADTYTYLFGVSVEKLKALLRIGEEILEAADAAnDGNIDYHAFVLTLSGDLFQVPALTEYVDF 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   1564 FRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAACVGALERVDQ 1643
Cdd:pfam03586  161 YVRSYELFLDIRAALAELRADARGALGRVALEQLAALEEAAEVRRDPEAAKEALERGVRITLPSEDALTAMREGLKLEDK 240

                          250
                   ....*....|.
gi 30984464   1644 APVKDTAYAEH 1654
Cdd:pfam03586  241 KQFEGTAYLEY 251

Herpes_teg_N

pfam04843

Herpesvirus tegument protein, N-terminal conserved region;

15-185

2.06e-56

Herpesvirus tegument protein, N-terminal conserved region;

Pssm-ID: 461453 [Multi-domain] Cd Length: 183 Bit Score: 194.64 E-value: 2.06e-56

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464     15 RNQFAPDLEPGGAVSCMRSSLSFLSLVFDAGLRDALSAEAVDGCLVEGGAW--TRASAGSDPPR-MCSAVELPTFLEYPS 91
Cdd:pfam04843    2 RNQFDCKFGPRAGSQCLSNCVSFLHSSYLNGERPVLSREALDAVLEEGARLdaLLRTSGRLPPRqYAQLHEIPGVIITGA 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464     92 GRGLRCVFSRLYGEVA------FFGKPAPGLLETQCPAHDFFAGPWARRPLSYTLVTIGALGMGLYRDGDEAYLFDPHGL 165
Cdd:pfam04843   82 WGCLIYRSSEIYGLVGhelsrnFNGTPQTGLLDTQCPAGTFFAYPWAKRPPSYTLIICNSLAGAIVIKDDTYYLFDPHCT 161

                          170       180
                   ....*....|....*....|..
gi 30984464    166 REGS--PAFVAKIRAGEVYTYL 185
Cdd:pfam04843  162 PEGNstAAVIVTVDAGDVYPYL 183

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

455-608

6.62e-13

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 74.95 E-value: 6.62e-13

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    455 PTPAGPT--TASSEPPTPAG------PTTASSEP---------------------PTPAGRPPTPAGRPPTP-------- 497
Cdd:pfam05109  461 PASTGPTvsTADVTSPTPAGttsgasPVTPSPSPrdngteskapdmtsptsavttPTPNATSPTPAVTTPTPnatsptlg 540

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    498 -ANPTASSEPPTPAGRPPTPAGRPPTP---------ANPTASSEPPTPNpegAPAPSSNEQPPAAASTDEATQKALDALR 567
Cdd:pfam05109  541 kTSPTSAVTTPTPNATSPTPAVTTPTPnatiptlgkTSPTSAVTTPTPN---ATSPTVGETSPQANTTNHTLGGTSSTPV 617

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|.
gi 30984464    568 DRQPPEPPCGSLTEllGRHPDTDGGVSRLAAHEAGIAREVT 608
Cdd:pfam05109  618 VTSPPKNATSAVTT--GQHNITSSSTSSMSLRPSSISETLS 656

PHA03269

envelope glycoprotein C; Provisional

455-574

8.61e-13

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 74.38 E-value: 8.61e-13

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPA-GPTTASSEPPTPAGRPPTPAGRPPTPAN-PT-ASSEPPTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PHA03269   27 PIPELHTSAATQKPDPApAPHQAASRAPDPAVAPTSAASRKPDLAQaPTpAASEKFDPAPAPHQAASRAPDPAVAPQLAA 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 30984464   532 PPTPNPEGAPAPSSNEQP-PAAASTDEATQKALDALRDRQPPEP 574
Cdd:PHA03269  107 APKPDAAEAFTSAAQAHEaPADAGTSAASKKPDPAAHTQHSPPP 150

PksD

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...

1474-2013

5.02e-11

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 69.13 E-value: 5.02e-11

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1474 YTPENQHHPALPPLAAARRIDWGPAFGAAAEtyaemfrvdTEPLARLLRITGGLLDLAQAGGGFIDYHEAVSRLAEDLNG 1553
Cdd:COG3321  853 YPGRGRRRVPLPTYPFQREDAAAALLAAALA---------AALAAAAALGALLLAALAAALAAALLALAAAAAAALALAA 923

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1554 VPSLRHYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAA 1633
Cdd:COG3321  924 AALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALA 1003

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1634 CVGALERVDQAPVKDTAYAEHVAFVARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLL 1713
Cdd:COG3321 1004 LLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAA 1083

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1714 RVAAIPAAAAkTLEQARSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDAL 1793
Cdd:COG3321 1084 LALAAALAAA-ALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAA 1162

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1794 GETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIG 1873
Cdd:COG3321 1163 LAAALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAA 1242

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1874 AKSAERAGAVEELGVAVERHDGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLY 1953
Cdd:COG3321 1243 AAVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALA 1322

                        490       500       510       520       530       540
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1954 SAYAKARAQTGAGGTPPPAPAPLLVDVRALEARARSPGERHEPDPRTVRGRGEAYLRARG 2013
Cdd:COG3321 1323 AALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALALAALA 1382

PHA03269

envelope glycoprotein C; Provisional

455-563

5.35e-11

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 68.22 E-value: 5.35e-11

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAgPTTASSEPPTPA-GPTTASSEPPTPAGRPPTPAGRPPTPA-NPT-ASSEPPTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PHA03269   42 PAPA-PHQAASRAPDPAvAPTSAASRKPDLAQAPTPAASEKFDPApAPHqAASRAPDPAVAPQLAAAPKPDAAEAFTSAA 120

                          90       100       110
                  ....*....|....*....|....*....|..
gi 30984464   532 PPTPNPEGAPAPSSNEQPPAAASTDEATQKAL 563
Cdd:PHA03269  121 QAHEAPADAGTSAASKKPDPAAHTQHSPPPFA 152

PHA03269

envelope glycoprotein C; Provisional

451-534

7.89e-10

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 64.75 E-value: 7.89e-10

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPA-GPTTASSEPPTPA-GPTTASSEPPTPAGRPPTPAGRPPTPANP--TASSEPPTPAGRPPTPAGRPPTPANP 526
Cdd:PHA03269   64 ASRKPDLAqAPTPAASEKFDPApAPHQAASRAPDPAVAPQLAAAPKPDAAEAftSAAQAHEAPADAGTSAASKKPDPAAH 143


                  ....*...
gi 30984464   527 TASSEPPT 534
Cdd:PHA03269  144 TQHSPPPF 151

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

1398-1962

1.45e-09

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 64.17 E-value: 1.45e-09

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1398 RDARAGRERWAADVEAALDRVEN-RAEFDAVELRRLQALAAQNKYNPRDFRKRAEQALAANAKTATLAL-----EAAFAf 1471
Cdd:COG4913  305 ARLEAELERLEARLDALREELDElEAQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLplpasAEEFA- 383

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1472 npytpENQHHpalpplAAARRIDWGPAFGAAAETYAEMfRVDTEPLARLLRITGGLLDLAQAGGGFID--YHEAVSRLAE 1549
Cdd:COG4913  384 -----ALRAE------AAALLEALEEELEALEEALAEA-EAALRDLRRELRELEAEIASLERRKSNIParLLALRDALAE 451

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1550 DLnGVPSLRhyVPFFrrghAEYLELCDRLDALRADVHRALGGVPLDL-------AAAAE------QTVRLRGDpaaAAEL 1616
Cdd:COG4913  452 AL-GLDEAE--LPFV----GELIEVRPEEERWRGAIERVLGGFALTLlvppehyAAALRwvnrlhLRGRLVYE---RVRT 521

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1617 VRTGVTLACPSEDALAacvgalERVDqapVKDTAYAEHV-AFVARR----------DLGEAKDALVRAKQQRAEAT---- 1681
Cdd:COG4913  522 GLPDPERPRLDPDSLA------GKLD---FKPHPFRAWLeAELGRRfdyvcvdspeELRRHPRAITRAGQVKGNGTrhek 592

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1682 ---DRVTAAL------REALAAHERQARSEAESLANLKtllrvaaipaaaaktlEQARSVAEIVDQIELLLEQTEKAAEL 1752
Cdd:COG4913  593 ddrRRIRSRYvlgfdnRAKLAALEAELAELEEELAEAE----------------ERLEALEAELDALQERREALQRLAEY 656

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1753 DQAAVDWLEHARRvfeahpltaardgspdpLARLHARLDALGETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSP 1832
Cdd:COG4913  657 SWDEIDVASAERE-----------------IAELEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLE 719

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1833 EALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIGAKSAERagAVEELGVAVERHDGLLARLREDVV------- 1905
Cdd:COG4913  720 KELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAVERE--LRENLEERIDALRARLNRAEEELEramrafn 797

                        570       580       590       600       610       620
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464 1906 -----ARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGA--RALVQHRLGLYSAYAKARAQ 1962
Cdd:COG4913  798 rewpaETADLDADLESLPEYLALLDRLEEDGLPEYEERFKELlnENSIEFVADLLSKLRRAIRE 861

PHA03269

envelope glycoprotein C; Provisional

451-552

2.32e-09

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 63.21 E-value: 2.32e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPA-GPTTASSEPPTPA-GPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTP-AGRPPTPAG-RPPTPANP 526
Cdd:PHA03269   50 ASRAPDPAvAPTSAASRKPDLAqAPTPAASEKFDPAPAPHQAASRAPDPAVAPQLAAAPKPdAAEAFTSAAqAHEAPADA 129

                          90       100
                  ....*....|....*....|....*.
gi 30984464   527 TASSEPPTPNPegaPAPSSNEQPPAA 552
Cdd:PHA03269  130 GTSAASKKPDP---AAHTQHSPPPFA 152

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

455-614

2.35e-09

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 63.19 E-value: 2.35e-09

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTAssePPTPAGRPPTPAGRPPTPANPTASSEPPTP-AGRPPTPAGRPPTPANPTASSEPP 533
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAA---APAAAPVAQAAAAPAPAAAPAAAASAPAAPpAAAPPAPVAAPAAAAPAAAPAAAP 442

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   534 TPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSL--TELlgrHPDTDGGVSRLAAHEA--GIAREVTE 609
Cdd:PRK14951  443 AAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLtpTEE---GDVWHATVQQLAAAEAitALARELAL 519


                  ....*
gi 30984464   610 CSRLT 614
Cdd:PRK14951  520 QSELV 524

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

468-553

1.18e-08

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 61.44 E-value: 1.18e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   468 PTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNE 547
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                  ....*....
gi 30984464   548 QP---PAAA 553
Cdd:PRK12270  118 TPlrgAAAA 126

PHA03378

EBNA-3B; Provisional

455-575

1.30e-08

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 61.24 E-value: 1.30e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTT--------ASSEPPtPAGPTTAS--SEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPA 524
Cdd:PHA03378  676 PSPTGANTmlpiqwapGTMQPP-PRAPTPMRppAAPPGRAQRPAAATGRARPPAAAPGRARPPAAAPGRARPPAAAPGRA 754

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30984464   525 NPTASSEPPTPNPEGAPAPSSNEQPPAAASTdeATQKALDALRDRQPPEPP 575
Cdd:PHA03378  755 RPPAAAPGRARPPAAAPGAPTPQPPPQAPPA--PQQRPRGAPTPQPPPQAG 803

PHA03269

envelope glycoprotein C; Provisional

488-594

2.12e-08

envelope glycoprotein C; Provisional

Pssm-ID: 165527 [Multi-domain] Cd Length: 566 Bit Score: 60.13 E-value: 2.12e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   488 PTPAgrPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQP-PAAASTDEATQK----- 561
Cdd:PHA03269   23 NTNI--PIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLAQAPTPAASEKFdPAPAPHQAASRApdpav 100

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 30984464   562 --ALDALRDRQPPEPPCGSLTellgRHPDT-DGGVS 594
Cdd:PHA03269  101 apQLAAAPKPDAAEAFTSAAQ----AHEAPaDAGTS 132

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

451-540

2.37e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 59.82 E-value: 2.37e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPtpagrPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:PRK14950  372 TAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATP-----PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTP 446

                          90
                  ....*....|
gi 30984464   531 EPPTPNPEGA 540
Cdd:PRK14950  447 PAPPKEEEKA 456

PRK07764

DNA polymerase III subunits gamma and tau; Validated

366-573

2.55e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 60.00 E-value: 2.55e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   366 SAGRHHPKRASLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASrpptPGAPPTPGAPPTPGAPPTPGAPPTPA 445
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEAS----AAPAPGVAAPEHHPKHVAVPDASDGG 666

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   446 GPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEP-PTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPA 524
Cdd:PRK07764  667 DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPaPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30984464   525 NPTASSEPP--TPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPE 573
Cdd:PRK07764  747 DPPDPAGAPaqPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

487-575

3.36e-08

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 59.44 E-value: 3.36e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   487 PPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDAL 566
Cdd:PRK14950  363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKP 442


                  ....*....
gi 30984464   567 RDRQPPEPP 575
Cdd:PRK14950  443 KYTPPAPPK 451

PRK12323

DNA polymerase III subunit gamma/tau;

386-602

3.55e-08

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 59.50 E-value: 3.55e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   386 RHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTA-- 463
Cdd:PRK12323  359 RMLAFRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAArq 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   464 --SSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAP 541
Cdd:PRK12323  439 asARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAP 518

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 30984464   542 APSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAG 602
Cdd:PRK12323  519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDG 579

PRK07764

DNA polymerase III subunits gamma and tau; Validated

349-568

3.93e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 59.23 E-value: 3.93e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   349 SKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGA 428
Cdd:PRK07764  592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   429 PPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 508
Cdd:PRK07764  672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   509 PAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRD 568
Cdd:PRK07764  752 AGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAEEVAMELLEE 811

PRK07764

DNA polymerase III subunits gamma and tau; Validated

454-571

3.99e-08

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 59.23 E-value: 3.99e-08

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTASSEPPTPAGPTTASSEPPT---PAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRP-PTPANPTAS 529
Cdd:PRK07764  399 PSAAAAAPAAAPAPAAAAPAAAAAPAPAAapqPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPaPAAAPEPTA 478

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 30984464   530 SEPPTPNPEGAPAPSsnEQPPAAASTDEATQkALDALRDRQP 571
Cdd:PRK07764  479 APAPAPPAAPAPAAA--PAAPAAPAAPAGAD-DAATLRERWP 517

PRK07764

DNA polymerase III subunits gamma and tau; Validated

384-575

1.42e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 57.69 E-value: 1.42e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   384 SARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTA 463
Cdd:PRK07764  594 AAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   464 SSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAP 543
Cdd:PRK07764  674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAG 753

                         170       180       190
                  ....*....|....*....|....*....|..
gi 30984464   544 SSNEQPPAAASTDEATQKALDALRDRQPPEPP 575
Cdd:PRK07764  754 APAQPPPPPAPAPAAAPAAAPPPSPPSEEEEM 785

PksD

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...

1187-1828

1.61e-07

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 57.57 E-value: 1.61e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1187 FAEVLRDLFPAAPETPLLVSFFSDHAP-----------------RVAQAVSEAIAAGSAAVATASPESTVEAAVRAQGVL 1249
Cdd:COG3321  734 FRAALAGVTPRAPRIPLISNVTGTWLTgealdadywvrhlrqpvRFADAVEALLADGVRVFLEVGPGPVLTGLVRQCLAA 813

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1250 ADTVAALSPAVRDPACPLAFLVALADSAAGYVKATRLALGARRAIARLGALGAAAADLAVAVRRENPQADGDRAALLEAA 1329
Cdd:COG3321  814 AGDAVVLPSLRRGEDELAQLLTALAQLWVAGVPVDWSALYPGRGRRRVPLPTYPFQREDAAAALLAAALAAALAAAAALG 893

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1330 ARAVEAARAGLAACEGEFGGLLHAEGSAGDPSPSGRALQELGKVVAATRRRADELEAAAADLAEKLADRDARAGRERWAA 1409
Cdd:COG3321  894 ALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAA 973

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1410 DVEAALDRVENRAEFDAVELRRLQALAAQNKYNPRDFRKRAEQALAANAKTATLALEAAFAFNPYTPENQHHPALPPLAA 1489
Cdd:COG3321  974 AAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAAAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAA 1053

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1490 ARRIDWGPAFGAAAETYAEMFRVDTEPLARLLRITGGLLDLAQAGGGFIDYHEAVSRLAEDLNGVPSLRHYVPFFRRGHA 1569
Cdd:COG3321 1054 AAAAAAALALALAALLLLAALAELALAAAALALAAALAAAALALALAALAAALLLLALLAALALAAAAAALLALAALLAA 1133

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1570 EylelcdRLDALRADVHRALGGVPLDLAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAACVGALERVDQAPVKDT 1649
Cdd:COG3321 1134 A------AAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALLLALALALAAALAAALAGLAALLLAALLAALLAA 1207

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1650 AYAEHVAFVARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTLEQA 1729
Cdd:COG3321 1208 LLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAALLAALAALALLAAAAGLAALAAAAAAAAAALAL 1287

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1730 RSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDALGETRRRTAALRRSLEA 1809
Cdd:COG3321 1288 AAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALAAAVAAALALAAAAAAAAAAAAAAAAAAALAAAA 1367

                        650
                 ....*....|....*....
gi 30984464 1810 AEAEWDEVWARFGRARGGA 1828
Cdd:COG3321 1368 GAAAAAAALALAALAAAVA 1386

PHA03378

EBNA-3B; Provisional

454-566

1.65e-07

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 57.38 E-value: 1.65e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTASSEP-PTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEP-PTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PHA03378  710 PPGRAQRPAAATGRaRPPAAAPGRARPPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQR 789

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 30984464   532 P-----PTPNPEGAPAPSSnEQPPAAASTDEATQKALDAL 566
Cdd:PHA03378  790 PrgaptPQPPPQAGPTSMQ-LMPRAAPGQQGPTKQILRQL 828

PRK12323

DNA polymerase III subunit gamma/tau;

385-572

1.81e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 57.19 E-value: 1.81e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   385 ARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTAS 464
Cdd:PRK12323  375 ATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAP 454

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   465 SEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPT------------ASSEP 532
Cdd:PRK12323  455 AAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAApagwvaesipdpATADP 534

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 30984464   533 PTPNPEGAPAPSSNEQPPAAASTDE-ATQKALDALRDRQPP 572
Cdd:PRK12323  535 DDAFETLAPAPAAAPAPRAAAATEPvVAPRPPRASASGLPD 575

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

1659-1988

2.56e-07

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 56.87 E-value: 2.56e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1659 ARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTL-----EQARSVA 1733
Cdd:COG1196  377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALeeaaeEEAELEE 456

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1734 EIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDALGETRRRTAALrrsleAAEAE 1813
Cdd:COG1196  457 EEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV-----AVLIG 531

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1814 WDEVWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIGAKSAERAGAVEELGVAVERH 1893
Cdd:COG1196  532 VEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREA 611

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1894 DGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQTGAGGTPPPAP 1973
Cdd:COG1196  612 DARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEE 691

                        330
                 ....*....|....*
gi 30984464 1974 APLLVDVRALEARAR 1988
Cdd:COG1196  692 ELELEEALLAEEEEE 706

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

480-559

2.67e-07

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 56.82 E-value: 2.67e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   480 PPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEAT 559
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PRK07764

DNA polymerase III subunits gamma and tau; Validated

455-592

2.68e-07

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 56.53 E-value: 2.68e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 534
Cdd:PRK07764  615 PAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA 694

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 30984464   535 PNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGG 592
Cdd:PRK07764  695 GAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPA 752

PHA03291

envelope glycoprotein I; Provisional

452-576

2.78e-07

envelope glycoprotein I; Provisional

Pssm-ID: 223033 [Multi-domain] Cd Length: 401 Bit Score: 55.73 E-value: 2.78e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTASSEPptpAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPP-TPAGRPPTPANPTASS 530
Cdd:PHA03291  173 AAPPLGEGSADGSCDP---ALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSPPStTIPAPSTTIAAPQAGT 249

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 30984464   531 EPPTPNPEGAPAPSSNEQPPAAAS-TDEATQKALDALRDRQPPEPPC 576
Cdd:PHA03291  250 TPEAEGTPAPPTPGGGEAPPANATpAPEASRYELTVTQIIQIAIPAS 296

PRK14950

DNA polymerase III subunits gamma and tau; Provisional

461-553

5.28e-07

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 55.59 E-value: 5.28e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   461 TTASSEPPTPAGPTTASSEP----PTPAGRPPTPAGRPPTPANPTAssEPPTPAGRPPTPAGRPPTPANPTASSEPPTPN 536
Cdd:PRK14950  359 LLVPVPAPQPAKPTAAAPSPvrptPAPSTRPKAAAAANIPPKEPVR--ETATPPPVPPRPVAPPVPHTPESAPKLTRAAI 436

                          90
                  ....*....|....*..
gi 30984464   537 PEGAPAPSSNEQPPAAA 553
Cdd:PRK14950  437 PVDEKPKYTPPAPPKEE 453

PRK12323

DNA polymerase III subunit gamma/tau;

452-606

6.11e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 55.27 E-value: 6.11e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPA-NPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:PRK12323  383 AQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPApEALAAARQASARGPGGAPAPAPAPAAAPAAAA 462

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30984464   531 EPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLGRHPDTDG-GVSRLAAHEAGIARE 606
Cdd:PRK12323  463 RPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAeSIPDPATADPDDAFE 539

PRK07003

DNA polymerase III subunit gamma/tau;

403-568

6.46e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 55.63 E-value: 6.46e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   403 RPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAG---------PTTASSEPPTPAGP 473
Cdd:PRK07003  380 VPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATAdrgddaadgDAPVPAKANARASA 459

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   474 TTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRP-PTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAA 552
Cdd:PRK07003  460 DSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPsAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAA 539

                         170
                  ....*....|....*....
gi 30984464   553 ASTDE---ATQKALDALRD 568
Cdd:PRK07003  540 AAPAAragGAAAALDVLRN 558

PksD

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...

781-1437

7.25e-07

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 55.65 E-value: 7.25e-07

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  781 LLQRIQALAGFARREEVRAAAEDREVRGALDALARGVDAVARRSG------PLTVAAVSPEEPGEGGGRPHPLSPEAIRV 854
Cdd:COG3321  702 LAARLEARGIRARRLPVSHAFHSPLMEPALEEFRAALAGVTPRAPriplisNVTGTWLTGEALDADYWVRHLRQPVRFAD 781

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  855 RLEQLRADGQKA-VE-GAtreyfHRGAVYSAKALLAGDARDRRYHVASAPVVPVVQLLESL------------PAFDAHV 920
Cdd:COG3321  782 AVEALLADGVRVfLEvGP-----GPVLTGLVRQCLAAAGDAVVLPSLRRGEDELAQLLTALaqlwvagvpvdwSALYPGR 856

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  921 QevARRARVPAPP------PLATSPPAELLRELVQRGRDLEAPADLAAWLASLGDAAGQGLVVRKELDELAQAIYKINER 994
Cdd:COG3321  857 G--RRRVPLPTYPfqredaAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALVA 934

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  995 TVRRSSGLAELERFEALDAALRGELESEAAFEPGGGDGAAAGGLPAETRRLAEDALHQAKAMAAAKLTDELSPEARERLA 1074
Cdd:COG3321  935 LAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLAA 1014

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1075 ARVRAIEAMLEEARARAEAAKAALARFFQKLQGVLRPLPDFGGLRVAPAVLATLRADIPGGWTCLPDAAQAAPPEVRAAL 1154
Cdd:COG3321 1015 AAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAAA 1094

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1155 RADLWGLLGQYRGALEHPTADTAAALSGLHPNFAEVLRDLFPAAPETPLLVSFFSDHAPRVAQAVSEAIAAGSAAVATAS 1234
Cdd:COG3321 1095 LALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAALL 1174

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1235 PESTVEAAVRAQGVLADTVAALSPAVRDPACPLAFLVALADSAAGYVKATRLALGARRAIARLGALGAAAADLAVAVRRE 1314
Cdd:COG3321 1175 LALALALAAALAAALAGLAALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAAA 1254

                        570       580       590       600       610       620       630       640
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1315 NPQADGDRAALLEAAARAVEAARAGLAACEGEFGGLLHAEGSAGDPSPSGRALQELGKVVAATRRRADELEAAAADLAEK 1394
Cdd:COG3321 1255 LLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAALA 1334

                        650       660       670       680
                 ....*....|....*....|....*....|....*....|...
gi 30984464 1395 LADRDARAGRERWAADVEAALDRVENRAEFDAVELRRLQALAA 1437
Cdd:COG3321 1335 AAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAAAAALA 1377

FAP

pfam07174

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...

454-523

8.23e-07

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix.

Pssm-ID: 429334 Cd Length: 301 Bit Score: 53.78 E-value: 8.23e-07

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    454 PPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTP 523
Cdd:pfam07174   42 EPAPPPPSTATAPPAPPPPPPAPAAPAPPPPPAAPNAPNAPPPPADPNAPPPPPADPNAPPPPAVDPNAP 111

PRK12323

DNA polymerase III subunit gamma/tau;

451-628

8.51e-07

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 54.88 E-value: 8.51e-07

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPT--PAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTA 528
Cdd:PRK12323  400 AAPPAAPAAAPAAAAAARAVAAAPARRSPAPEalAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   529 ssePPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALrDRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAGIAREVT 608
Cdd:PRK12323  480 ---PARAAPAAAPAPADDDPPPWEELPPEFASPAPAQP-DAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAA 555

                         170       180
                  ....*....|....*....|
gi 30984464   609 ECSRLTinALRSPFPGSPGL 628
Cdd:PRK12323  556 ATEPVV--APRPPRASASGL 573

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

451-529

1.01e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 54.90 E-value: 1.01e-06

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTAS 529
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118

PRK07764

DNA polymerase III subunits gamma and tau; Validated

393-575

1.02e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 54.61 E-value: 1.02e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   393 SRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAG 472
Cdd:PRK07764  591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWP 670

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   473 PTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTP-NPEGAPAPSSNEQPPA 551
Cdd:PRK07764  671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPaADDPVPLPPEPDDPPD 750

                         170       180
                  ....*....|....*....|....
gi 30984464   552 AASTDEATQKALDALRDRQPPEPP 575
Cdd:PRK07764  751 PAGAPAQPPPPPAPAPAAAPAAAP 774

PHA03378

EBNA-3B; Provisional

455-575

2.09e-06

EBNA-3B; Provisional

Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 53.92 E-value: 2.09e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEP----PTPAGPTTasSEPPTPAGRPPTPAGRPPTPANPTASsePPTPAGRPPTPAGR-PPTPANPTAS 529
Cdd:PHA03378  659 ITPYKPTWTQIGHipyqPSPTGANT--MLPIQWAPGTMQPPPRAPTPMRPPAA--PPGRAQRPAAATGRaRPPAAAPGRA 734

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 30984464   530 SEP---PTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPP 575
Cdd:PHA03378  735 RPPaaaPGRARPPAAAPGRARPPAAAPGRARPPAAAPGAPTPQPPPQAP 783

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

470-534

2.28e-06

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 53.15 E-value: 2.28e-06

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30984464   470 PAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 534
Cdd:PTZ00144  125 PAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189

Streccoc_I_II

NF033804

antigen I/II family LPXTG-anchored adhesin; Members of the antigen I/II family are adhesins ...

453-552

2.87e-06

Pssm-ID: 468188 [Multi-domain] Cd Length: 1552 Bit Score: 53.41 E-value: 2.87e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAgRPPTPANPTASSEP---PTPAG-------RPPTPAGRPPT 522
Cdd:NF033804  876 EPSKPEEPTYETEKPLEPAPVAPTYENEPTPPVKTPDQP-EPSKPEEPTYETEKplePAPVApsyenepTPPVKTPDQPE 954

                          90       100       110
                  ....*....|....*....|....*....|
gi 30984464   523 PANPTASSEPPTPNPEGAPAPSSNEQPPAA 552
Cdd:NF033804  955 PSKPVEPTYDPLPTPPVAPTPKQLPTPPAV 984

FAP

pfam07174

Fibronectin-attachment protein (FAP); This family contains bacterial fibronectin-attachment ...

461-550

3.37e-06

Pssm-ID: 429334 Cd Length: 301 Bit Score: 51.85 E-value: 3.37e-06

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    461 TTASSEPPTPAGPTTASSEPPtPAGRPPTPAGRPPTPANPTA--SSEPPTPAGRPPTPAGRPPTPANPTASSEPPT-PNP 537
Cdd:pfam07174   22 AVAGASAVAVALPAVAHADPE-PAPPPPSTATAPPAPPPPPPapAAPAPPPPPAAPNAPNAPPPPADPNAPPPPPAdPNA 100

                           90
                   ....*....|...
gi 30984464    538 EGAPAPSSNEQPP 550
Cdd:pfam07174  101 PPPPAVDPNAPEP 113

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

454-535

4.37e-06

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 52.97 E-value: 4.37e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPP 533
Cdd:PRK12270   38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEV 117


                  ..
gi 30984464   534 TP 535
Cdd:PRK12270  118 TP 119

PRK07764

DNA polymerase III subunits gamma and tau; Validated

470-575

5.01e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.68 E-value: 5.01e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   470 PAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQP 549
Cdd:PRK07764  386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQ 465

                          90       100
                  ....*....|....*....|....*.
gi 30984464   550 PAAASTDEATQKALDALRDRQPPEPP 575
Cdd:PRK07764  466 PAPAPAAAPEPTAAPAPAPPAAPAPA 491

PRK07764

DNA polymerase III subunits gamma and tau; Validated

455-602

5.40e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 52.30 E-value: 5.40e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGrPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEP-P 533
Cdd:PRK07764  590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAA-PAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGdG 668

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   534 TPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAG 602
Cdd:PRK07764  669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADD 737

PRK07764

DNA polymerase III subunits gamma and tau; Validated

397-598

7.78e-06

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 51.91 E-value: 7.78e-06

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   397 GGDEQTRPAAGPRPPTPASRPPTPGAPPTPGapptpgapptpgapptpagpTTASSEPPTPAGPTTASSEPPTPAGPTTA 476
Cdd:PRK07764  589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPA--------------------APAAPAAPAPAGAAAAPAEASAAPAPGVA 648

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   477 SSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTD 556
Cdd:PRK07764  649 APEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 30984464   557 EATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGGVSRLAA 598
Cdd:PRK07764  729 SAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAP 770

PHA03307

transcriptional regulator ICP4; Provisional

353-578

1.02e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 51.71 E-value: 1.02e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   353 RPTWTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSR---GSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAP 429
Cdd:PHA03307  193 PPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGAsssDSSSSESSGCGWGPENECPLPRPAPITLPTRIWEA 272

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   430 PTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGP------------TTASSEPPTPAGRPPTPA-GRPPT 496
Cdd:PHA03307  273 SGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSsssssresssssTSSSSESSRGAAVSPGPSpSRSPS 352

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   497 PANPTASSEPPTPAGRPPtPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPA-----AASTDEATQKALDALRDRQP 571
Cdd:PHA03307  353 PSRPPPPADPSSPRKRPR-PSRAPSSPAASAGRPTRRRARAAVAGRARRRDATGRfpagrPRPSPLDAGAASGAFYARYP 431


                  ....*..
gi 30984464   572 PEPPCGS 578
Cdd:PHA03307  432 LLTPSGE 438

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

356-569

1.07e-05

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 51.46 E-value: 1.07e-05

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    356 WTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSGgdeqTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAP 435
Cdd:pfam05109  439 FAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPAG----TTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVT 514

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    436 PTPGAPPTPAGPTtaSSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPT--PANPTASSEPPTPAGRP 513
Cdd:pfam05109  515 TPTPNATSPTPAV--TTPTPNATSPTLGKTSPTSAVTTPTPNATSPTPAVTTPTPNATIPTlgKTSPTSAVTTPTPNATS 592

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464    514 PTpAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDR 569
Cdd:pfam05109  593 PT-VGETSPQANTTNHTLGGTSSTPVVTSPPKNATSAVTTGQHNITSSSTSSMSLR 647

PTZ00449

104 kDa microneme/rhoptry antigen; Provisional

451-574

1.09e-05

104 kDa microneme/rhoptry antigen; Provisional

Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 51.61 E-value: 1.09e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRP--PTPAGRPPTPANPTA 528
Cdd:PTZ00449  517 SGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPefPKDPKHPKDPEEPKK 596

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 30984464   529 SSEPPTPN-PEGAPAPssneQPPAAASTDEATQKALDALRDRQPPEP 574
Cdd:PTZ00449  597 PKRPRSAQrPTRPKSP----KLPELLDIPKSPKRPESPKSPKRPPPP 639

PLN02217

probable pectinesterase/pectinesterase inhibitor

451-554

1.36e-05

probable pectinesterase/pectinesterase inhibitor

Pssm-ID: 215130 [Multi-domain] Cd Length: 670 Bit Score: 50.86 E-value: 1.36e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTP-AGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTAS 529
Cdd:PLN02217  563 AGNPGSTNSTPTGSAASSNTTFSSDSPSTVVAPSTSPPAGhLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKV 642

                          90       100
                  ....*....|....*....|....*
gi 30984464   530 SEPPTPNPEGAPAPSSNEQPPAAAS 554
Cdd:PLN02217  643 ASTETASPESSIKVASTESSVSMVS 667

PRK14948

DNA polymerase III subunit gamma/tau;

464-549

3.00e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 49.96 E-value: 3.00e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   464 SSEPPTPAGPTTASSEPPTPAgrPPTPAGRPPTPANPTASSEPPTPAGRPPTPAgrppTPANPTASSEPPTPNPEGAPAP 543
Cdd:PRK14948  515 GSASNTAKTPPPPQKSPPPPA--PTPPLPQPTATAPPPTPPPPPPTATQASSNA----PAQIPADSSPPPPIPEEPTPSP 588


                  ....*.
gi 30984464   544 SSNEQP 549
Cdd:PRK14948  589 TKDSSP 594

PRK07003

DNA polymerase III subunit gamma/tau;

337-574

3.56e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.85 E-value: 3.56e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   337 LPRPNQHYPLGFSKRRRPTWTPPSSLedlSAGRHHPKRASLPTRTRRSARHAATPfsRGSGGDEQTRPAAGPRPPTPASR 416
Cdd:PRK07003  380 VPAPGARAAAAVGASAVPAVTAVTGA---AGAALAPKAAAAAAATRAEAPPAAPA--PPATADRGDDAADGDAPVPAKAN 454

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   417 PPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPT--PAGPTTASSEPPTPAGRPPTPAGRP 494
Cdd:PRK07003  455 ARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVpdARAPAAASREDAPAAAAPPAPEARP 534

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   495 PTPANPTA----------------------SSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPeGAPAPSSNEQPPAA 552
Cdd:PRK07003  535 PTPAAAAPaaraggaaaaldvlrnagmrvsSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP-RARAATGDAPPNGA 613

                         250       260
                  ....*....|....*....|..
gi 30984464   553 ASTDEATQkaldalrDRQPPEP 574
Cdd:PRK07003  614 ARAEQAAE-------SRGAPPP 628

PRK14971

DNA polymerase III subunit gamma/tau;

461-570

3.76e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 49.39 E-value: 3.76e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   461 TTASSEPPTPAGPTTASSEPPT-PAGRPPTPAGRPPTPANPTASSEPPTPAGRP-PTPAGRPPT-PANPTASSE---PPT 534
Cdd:PRK14971  363 TQKGDDASGGRGPKQHIKPVFTqPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSaTQPAGTPPTvSVDPPAAVPvnpPST 442

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 30984464   535 PNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQ 570
Cdd:PRK14971  443 APQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQEKA 478

PRK14971

DNA polymerase III subunit gamma/tau;

458-558

4.13e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 49.39 E-value: 4.13e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   458 AGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTpanptASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNP 537
Cdd:PRK14971  388 AAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPT-----VSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSK 462

                          90       100
                  ....*....|....*....|...
gi 30984464   538 EGAPAPSSNE--QPPAAASTDEA 558
Cdd:PRK14971  463 VSSLGPSTLRpiQEKAEQATGNI 485

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

1659-2013

4.29e-05

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 49.55 E-value: 4.29e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1659 ARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTLEQA-----RSVA 1733
Cdd:COG1196  293 LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAeeallEAEA 372

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1734 EIVDQIELLLEQTEKAAELDQAAvdwLEHARRvfEAHPLTAARDGspdpLARLHARLDALGETRRRTAALRRSLEAAEAE 1813
Cdd:COG1196  373 ELAEAEEELEELAEELLEALRAA---AELAAQ--LEELEEAEEAL----LERLERLEEELEELEEALAELEEEEEEEEEA 443

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1814 WDEVWARFGRARggawkspEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAigAKSAERAGAVEELGVAVERH 1893
Cdd:COG1196  444 LEEAAEEEAELE-------EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLL--LLLEAEADYEGFLEGVKAAL 514

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1894 DGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQTGAGGTPPPAP 1973
Cdd:COG1196  515 LLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALAR 594

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 30984464 1974 APLLVDVRALEARARSPGERHEPDPRTVRGRGEAYLRARG 2013
Cdd:COG1196  595 GAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEA 634

PksD

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites ...

378-895

4.55e-05

Acyl transferase domain in polyketide synthase (PKS) enzymes [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 442550 [Multi-domain] Cd Length: 1386 Bit Score: 49.49 E-value: 4.55e-05

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  378 PTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTP 457
Cdd:COG3321  854 PGRGRRRVPLPTYPFQREDAAAALLAAALAAALAAAAALGALLLAALAAALAAALLALAAAAAAALALAAAALAALLALV 933

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  458 AGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNP 537
Cdd:COG3321  934 ALAAAAAALLALAAAAAAAAAALAAAEAGALLLLAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAALALLAAAALLLA 1013

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  538 EGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAGIAREVTECSRLTINA 617
Cdd:COG3321 1014 AAAAAAALLALAALLAAAAAALAAAAAAAAAAAALAALAAAAAAAAALALALAALLLLAALAELALAAAALALAAALAAA 1093

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  618 LRSPFPGSPGLLQHCIVFLFERVLAFLIENGARTHAGAGAEGPASGLLDLTVSLLPRRTAVGDFLASTRMTLADVAAHLP 697
Cdd:COG3321 1094 ALALALAALAAALLLLALLAALALAAAAAALLALAALLAAAAAAAALAAAAAAAAALALAAAAAALAAALAAALLAAAAL 1173

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  698 LIQPVLDEGSIVGRLALAK-LVLVARDVIRTTDDFHGELAELERRLRATPPTEVYARLSEWLLERSKAGPDTLFAPATPT 776
Cdd:COG3321 1174 LLALALALAAALAAALAGLaALLLAALLAALLAALLALALAALAAAAAALLAAAAAAAALALLALAAAAAAVAALAAAAA 1253

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  777 HPEPLLQRIQALAGFARREEVRAAAEDREVRGALDALARGVDAVARRSGPLTVAAVSPEEPGEGGGRPHPLSPEAIRVRL 856
Cdd:COG3321 1254 ALLAALAALALLAAAAGLAALAAAAAAAAAALALAAAAAAAAAALAALLAAAAAAAAAAAAAAAAAALAAALLAAALAAL 1333

                        490       500       510
                 ....*....|....*....|....*....|....*....
gi 30984464  857 EQLRADGQKAVEGATREYFHRGAVYSAKALLAGDARDRR 895
Cdd:COG3321 1334 AAAVAAALALAAAAAAAAAAAAAAAAAAALAAAAGAAAA 1372

PRK07003

DNA polymerase III subunit gamma/tau;

395-554

4.79e-05

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 49.46 E-value: 4.79e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   395 GSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPT--PAGPTTASSEPPTPAG 472
Cdd:PRK07003  366 GAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPaaPAPPATADRGDDAADG 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   473 PTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAA 552
Cdd:PRK07003  446 DAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAA 525


                  ..
gi 30984464   553 AS 554
Cdd:PRK07003  526 AP 527

Pneumo_att_G

pfam05539

Pneumovirinae attachment membrane glycoprotein G;

451-574

5.87e-05

Pneumovirinae attachment membrane glycoprotein G;

Pssm-ID: 114270 [Multi-domain] Cd Length: 408 Bit Score: 48.51 E-value: 5.87e-05

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSE------PPTPAGPTTASSEPPTPAGP---TTASSEPPTPagRPPTpagrPPTPANPTASSEPPTPAGRPPTPAGRPP 521
Cdd:pfam05539  228 SNPepqtepPPSQRGPSGSPQHPPSTTSQdqsTTGDGQEHTQ--RRKT----PPATSNRRSPHSTATPPPTTKRQETGRP 301

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|...
gi 30984464    522 TPANPTASSEPPTPNPEGAPAPSSNEQppaaastdeaTQKALDAlRDRQPPEP 574
Cdd:pfam05539  302 TPRPTATTQSGSSPPHSSPPGVQANPT----------TQNLVDC-KELDPPKP 343

PHA03307

transcriptional regulator ICP4; Provisional

393-578

6.04e-05

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 49.01 E-value: 6.04e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   393 SRGSGGDEQTRPAA--GPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEP-----------PTPAG 459
Cdd:PHA03307   13 AAAEGGEFFPRPPAtpGDAADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGteapanesrstPTWSL 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   460 PTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEG 539
Cdd:PHA03307   93 STLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQA 172

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 30984464   540 APAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGS 578
Cdd:PHA03307  173 ALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

493-573

7.46e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 7.46e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   493 RPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPnPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPP 572
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAA-PAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115


                  .
gi 30984464   573 E 573
Cdd:PRK12270  116 E 116

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

487-565

7.78e-05

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.73 E-value: 7.78e-05

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   487 PPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSneqPPAAASTDEATQKALDA 565
Cdd:PRK12270   40 STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAA---PPAAAAAAAPAAAAVED 115

PRK07994

DNA polymerase III subunits gamma and tau; Validated

451-574

8.06e-05

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 48.32 E-value: 8.06e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:PRK07994  365 LPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSEPA 444

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 30984464   531 EPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEP 574
Cdd:PRK07994  445 AASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVE 488

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

452-555

8.65e-05

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 48.03 E-value: 8.65e-05

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    452 SEPPTPAGP--TTASSEPPTPAG--PTTASSEPPTPAGRPPTPAGRPPTPANPTAssePPTPAGRPPTPAGRPPTPANPT 527
Cdd:pfam17823   98 SEPATREGAadGAASRALAAAASssPSSAAQSLPAAIAALPSEAFSAPRAAACRA---NASAAPRAAIAAASAPHAASPA 174

                           90       100
                   ....*....|....*....|....*...
gi 30984464    528 ASSEPPTPNPEGAPAPSSNEQPPAAAST 555
Cdd:pfam17823  175 PRTAASSTTAASSTTAASSAPTTAASSA 202

PRK12495

hypothetical protein; Provisional

452-540

8.99e-05

hypothetical protein; Provisional

Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 46.79 E-value: 8.99e-05

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTaSSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PRK12495   88 SDAGSQASPDD-DAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQPATPDERRSPRQRPPVSGE 166


                  ....*....
gi 30984464   532 PPTPNPEGA 540
Cdd:PRK12495  167 PPTPSTPDA 175

DUF3729

pfam12526

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...

452-520

1.08e-04

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important.

Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 44.30 E-value: 1.08e-04

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464    452 SEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRP 520
Cdd:pfam12526   38 DPPPPVGDPRPPVVDTPPPVSAVWVLPPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKPPLPPPRP 106

PRK07003

DNA polymerase III subunit gamma/tau;

404-578

1.09e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 48.31 E-value: 1.09e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   404 PAAGPRPPTP-ASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEPPT 482
Cdd:PRK07003  368 PGGGVPARVAgAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDA 447

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   483 PAgRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAgrPPTPANPTASSEPPT-PNPEGAPAPSSNEQPPAAASTDEATQK 561
Cdd:PRK07003  448 PV-PAKANARASADSRCDERDAQPPADSGSASAPA--SDAPPDAAFEPAPRAaAPSAATPAAVPDARAPAAASREDAPAA 524

                         170
                  ....*....|....*..
gi 30984464   562 ALDALRDRQPPEPPCGS 578
Cdd:PRK07003  525 AAPPAPEARPPTPAAAA 541

PHA03246

large tegument protein UL36; Provisional

3189-3287

1.10e-04

large tegument protein UL36; Provisional

Pssm-ID: 223020 [Multi-domain] Cd Length: 3095 Bit Score: 48.43 E-value: 1.10e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  3189 LGSLDPETDpetDPFAHPPDPRAPEAgDRASPSSYfgpppLSANAALSRRYVRSTGRSALAVLIEACWRIRRQLRMTRHA 3268
Cdd:PHA03246 3004 LSSTDSDSD---DSRSTVYNSNSTDT-DMSSTSRV-----IIADTLLTRRDFRKASRGALYALTKACEKIARQITQTRDQ 3074

                          90
                  ....*....|....*....
gi 30984464  3269 LLNRSGAVLTGLYHVRMLL 3287
Cdd:PHA03246 3075 LRSRVITLAIEIFKIKMLL 3093

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

486-564

1.14e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 48.35 E-value: 1.14e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   486 RPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALD 564
Cdd:PRK12270   37 GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

PRK14948

DNA polymerase III subunit gamma/tau;

465-546

1.47e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 47.65 E-value: 1.47e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   465 SEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPAnPTASSEPPTPAgrPPTPAGRPPTPANPTASSEPPTPNPEGAPAPS 544
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA-PKTKQAATTPS--PPPAKASPPIPVPAEPTEPSPTPPANAANAPP 437


                  ..
gi 30984464   545 SN 546
Cdd:PRK14948  438 SL 439

dnaA

PRK14086

chromosomal replication initiator protein DnaA;

455-627

1.49e-04

chromosomal replication initiator protein DnaA;

Pssm-ID: 237605 [Multi-domain] Cd Length: 617 Bit Score: 47.51 E-value: 1.49e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTP-ANPTASSE--PPTPAGRPPTPAGRPP--TPANPTAS 529
Cdd:PRK14086   98 PPPHARRTSEPELPRPGRRPYEGYGGPRADDRPPGLPRQDQLPtARPAYPAYqqRPEPGAWPRAADDYGWqqQRLGFPPR 177

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   530 SEPPTPNPEgAPAPSSNEQPPAAASTDEATQKAlDALRDRQPPEPPCGSLTELLGRHPDTDGgvsrlAAHEAGIAREVTE 609
Cdd:PRK14086  178 APYASPASY-APEQERDREPYDAGRPEYDQRRR-DYDHPRPDWDRPRRDRTDRPEPPPGAGH-----VHRGGPGPPERDD 250

                         170
                  ....*....|....*...
gi 30984464   610 CSRLTInalRSPFPGSPG 627
Cdd:PRK14086  251 APVVPI---RPSAPGPLA 265

PRK14948

DNA polymerase III subunit gamma/tau;

476-604

1.70e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 47.26 E-value: 1.70e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   476 ASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPagrpPTPAGRPPTPANPTASSEPPTPNPegAPAPSSNEQPPAAAST 555
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA----PKTKQAATTPSPPPAKASPPIPVP--AEPTEPSPTPPANAAN 434

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   556 DEAT-------QKALDALrdrqppEPPcgSLTELLGRHpdtdGGVSRLAAHEAGIA 604
Cdd:PRK14948  435 APPSlnleelwQQILAKL------ELP--STRMLLSQQ----AELVSLDSNRAVIA 478

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

476-572

1.76e-04

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 46.92 E-value: 1.76e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   476 ASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQP-----P 550
Cdd:NF041121   17 RAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPvrvpaP 96

                          90       100
                  ....*....|....*....|..
gi 30984464   551 AAASTDEATQKALDALRDRQPP 572
Cdd:NF041121   97 PALPNPLELARALRPLKRRVPS 118

PTZ00436

60S ribosomal protein L19-like protein; Provisional

458-558

1.82e-04

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 46.87 E-value: 1.82e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   458 AGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPP--TPANPTASSEPPTPAGRPPTPAGRPPTPAnPTASSEPPTP 535
Cdd:PTZ00436  227 AAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPakAAAPPAKAAAPPAKAAAPPAKAAAPPAKA-AAAPAKAAAA 305

                          90       100
                  ....*....|....*....|...
gi 30984464   536 NPEGAPAPSSNEQPPAAASTDEA 558
Cdd:PTZ00436  306 PAKAAAAPAKAAAPPAKAAAPPA 328

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

453-574

1.91e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 47.23 E-value: 1.91e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPaGPTTASSEPPTP-----AGRPPTPAGRPPTPAnPTASSEPPTPAGR-----PPT-PAGRPP 521
Cdd:PLN03209  381 KPPTSPIPTPPSSSPASS-KSVDAVAKPAEPdvvpsPGSASNVPEVEPAQV-EAKKTRPLSPYARyedlkPPTsPSPTAP 458

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   522 TPANPTA---SSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEP 574
Cdd:PLN03209  459 TGVSPSVsstSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPSP 514

PRK10856

cytoskeleton protein RodZ;

474-563

1.96e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 46.56 E-value: 1.96e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   474 TTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPAN--PTASSEPPTPNPEGAPAPSSNEQppA 551
Cdd:PRK10856  165 DTSTTTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANvdTAATPAPAAPATPDGAAPLPTDQ--A 242

                          90
                  ....*....|..
gi 30984464   552 AASTDEATQKAL 563
Cdd:PRK10856  243 GVSTPAADPNAL 254

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

453-534

2.05e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 47.19 E-value: 2.05e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAgrPPTPANPTASSEPPTPAGRPPT------PAGRppTPANP 526
Cdd:PRK12270   56 SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAA--APAAPPAAAAAAAPAAAAVEDEvtplrgAAAA--VAKNM 131


                  ....*...
gi 30984464   527 TASSEPPT 534
Cdd:PRK12270  132 DASLEVPT 139

PRK14954

DNA polymerase III subunits gamma and tau; Provisional

455-567

2.06e-04

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 47.25 E-value: 2.06e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTpagRPPTPAGRPPTPANPTASsepPTPAGRPPTPagrPPTPANPTASSEPPT 534
Cdd:PRK14954  382 PSPAGSPDVKKKAPEPDLPQPDRHPGPA---KPEAPGARPAELPSPASA---PTPEQQPPVA---RSAPLPPSPQASAPR 452

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30984464   535 PNPEGAP---------------------APSSNEQPPAAASTDEATQKALDALR 567
Cdd:PRK14954  453 NVASGKPgvdlgswqgkfmnftrngsrkQPVQASSSDAAQTGVFEGVAELEKLR 506

PRK07003

DNA polymerase III subunit gamma/tau;

453-574

2.07e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 47.15 E-value: 2.07e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE- 531
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADr 438

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 30984464   532 --PPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEP 574
Cdd:PRK07003  439 gdDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASD 483

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

451-579

2.12e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 46.84 E-value: 2.12e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGP--TTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTpagrPPTPAGRPPTPANPTA 528
Cdd:PLN03209  451 TSPSPTAPTGvsPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPT----SPSPAAPVGKVAPSST 526

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 30984464   529 SSEPPTPNPEGAPAPSSNEQppaaasTDEATQKALDAL---RDRQPPEPPCGSL 579
Cdd:PLN03209  527 NEVVKVGNSAPPTALADEQH------HAQPKPRPLSPYtmyEDLKPPTSPTPSP 574

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

452-575

2.64e-04

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 46.84 E-value: 2.64e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTAssEPPTPAGPTTASSEPPTPAGR--PPTPAGRPPTPANPTASSE---PPTpAGRPPTPAGRPPTPANP 526
Cdd:PLN03209  325 SQRVPPKESDAA--DGPKPVPTKPVTPEAPSPPIEeePPQPKAVVPRPLSPYTAYEdlkPPT-SPIPTPPSSSPASSKSV 401

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 30984464   527 TASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALD---ALRDRQPPEPP 575
Cdd:PLN03209  402 DAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSpyaRYEDLKPPTSP 453

PRK07994

DNA polymerase III subunits gamma and tau; Validated

457-575

2.69e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 46.78 E-value: 2.69e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   457 PAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAgrPPTPANPTASSEPPTPN 536
Cdd:PRK07994  361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ--LLAARQQLQRAQGATKA 438

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 30984464   537 PEGAPAPSSNEQPPAAASTDEAtqkALDALRDRQPPEPP 575
Cdd:PRK07994  439 KKSEPAAASRARPVNSALERLA---SVRPAPSALEKAPA 474

flhF

PRK06995

flagellar biosynthesis protein FlhF;

456-561

2.86e-04

flagellar biosynthesis protein FlhF;

Pssm-ID: 235904 [Multi-domain] Cd Length: 484 Bit Score: 46.50 E-value: 2.86e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   456 TPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTpaNPTASSEPPTP-AGRPPTPAGRPPTPANPTASSEPPT 534
Cdd:PRK06995   52 APPAAAAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAK--RLTAQREQLVArAAAPAAPEAQAPAAPAERAAAENAA 129

                          90       100
                  ....*....|....*....|....*....
gi 30984464   535 PNPEGAP--APSSNEQPPAAASTDEATQK 561
Cdd:PRK06995  130 RRLARAAaaAPRPRVPADAAAAVADAVKA 158

PRK13042

superantigen-like protein SSL4; Reviewed;

461-538

3.01e-04

superantigen-like protein SSL4; Reviewed;

Pssm-ID: 183854 [Multi-domain] Cd Length: 291 Bit Score: 45.78 E-value: 3.01e-04

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   461 TTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTP-AGRPPTPANPTASSEPPTPNPE 538
Cdd:PRK13042   24 TTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPsSTKVETPQSPTTKQVPTEINPK 102

PLN02983

biotin carboxyl carrier protein of acetyl-CoA carboxylase

463-550

3.16e-04

biotin carboxyl carrier protein of acetyl-CoA carboxylase

Pssm-ID: 215533 [Multi-domain] Cd Length: 274 Bit Score: 45.60 E-value: 3.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   463 ASSEPPTPAgpTTASSEPPTPAGRPPTPagrpPTPANPTASSEPPTPAGRPPTPAgrpptPANPTASSEPPTPNPEG--- 539
Cdd:PLN02983  140 ALPQPPPPA--PVVMMQPPPPHAMPPAS----PPAAQPAPSAPASSPPPTPASPP-----PAKAPKSSHPPLKSPMAgtf 208

                          90
                  ....*....|...
gi 30984464   540 --APAPSsneQPP 550
Cdd:PLN02983  209 yrSPAPG---EPP 218

PRK07764

DNA polymerase III subunits gamma and tau; Validated

404-569

3.47e-04

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 46.52 E-value: 3.47e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   404 PAAGPRPPTPASRPPTpgapptpgapptpgapptpgapptpagpttASSEPPTPAGPTTASSEPPTPAGPTTA-SSEPPT 482
Cdd:PRK07764  392 GAPAAAAPSAAAAAPA------------------------------AAPAPAAAAPAAAAAPAPAAAPQPAPApAPAPAP 441

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   483 PAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNeqPPAAASTDEATQKA 562
Cdd:PRK07764  442 PSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAG--ADDAATLRERWPEI 519


                  ....*..
gi 30984464   563 LDALRDR 569
Cdd:PRK07764  520 LAAVPKR 526

kgd

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine ...

502-583

3.48e-04

multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit;

Pssm-ID: 237030 [Multi-domain] Cd Length: 1228 Bit Score: 46.42 E-value: 3.48e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   502 ASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTE 581
Cdd:PRK12270   39 GSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118


                  ..
gi 30984464   582 LL 583
Cdd:PRK12270  119 PL 120

PHA02682

ORF080 virion core protein; Provisional

461-571

3.49e-04

ORF080 virion core protein; Provisional

Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 45.62 E-value: 3.49e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   461 TTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPT-------PAGRPPTPANPTASSE-- 531
Cdd:PHA02682   69 NSACMQRPSGQSPLAPSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTcpppavcPAPARPAPACPPSTRQcp 148

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|.
gi 30984464   532 --PPTPNPEGAPAP---------SSNEQPPAAASTDEATQKALDALRDRQP 571
Cdd:PHA02682  149 paPPLPTPKPAPAAkpiflhnqlPPPDYPAASCPTIETAPAASPVLEPRIP 199

Pro-rich

pfam15240

Proline-rich protein; This family includes several eukaryotic proline-rich proteins.

454-526

3.53e-04

Proline-rich protein; This family includes several eukaryotic proline-rich proteins.

Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 43.87 E-value: 3.53e-04

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30984464    454 PPTPAGPTTASSE---PPTPAGPTTASS-EPPTPAGRPPTPAGRPPTPANPtaSSEPPTPAGRPPTPAGRPPTPANP 526
Cdd:pfam15240   88 PPPQGGPRPPPGKpqgPPPQGGNQQQGPpPPGKPQGPPPQGGGPPPQGGNQ--QGPPPPPPGNPQGPPQRPPQPGNP 162

PRK07003

DNA polymerase III subunit gamma/tau;

466-575

3.58e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 46.38 E-value: 3.58e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   466 EPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGrpPTPANPTASSEPPTPNPEGAPAPSS 545
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVPAPGARAAAAVGASAVPAVTAVTGAAGAALA--PKAAAAAAATRAEAPPAAPAPPATA 436

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 30984464   546 NE-----QPPAAASTDEATQKALDALRDRQPPEPP 575
Cdd:PRK07003  437 DRgddaaDGDAPVPAKANARASADSRCDERDAQPP 471

DUF4045

pfam13254

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...

451-575

3.59e-04

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length.

Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 45.93 E-value: 3.59e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSEPPTPAGPTTASSEPPTPAGPTTASSEP-PTPAGRPPTPagrPPTPANPTASSEPPTPAGRPPTPagrpPTPANPTAS 529
Cdd:pfam13254  221 PSVSGISADSSPTKEEPSEEADTLSTDKEQsPAPTSASEPP---PKTKELPKDSEEPAAPSKSAEAS----TEKKEPDTE 293

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 30984464    530 SEPPTPNPEGAPAPSSneqPPAAASTDE-ATQKALDALRDRQPPEPP 575
Cdd:pfam13254  294 SSPETSSEKSAPSLLS---PVSKASIDKpLSSPDRDPLSPKPKPQSP 337

PRK10856

cytoskeleton protein RodZ;

455-546

3.71e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 45.79 E-value: 3.71e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEpPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 534
Cdd:PRK10856  161 SVPLDTSTTTDPATTPAPAAPVDTT-PTNSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAPLPT 239

                          90
                  ....*....|...
gi 30984464   535 PN-PEGAPAPSSN 546
Cdd:PRK10856  240 DQaGVSTPAADPN 252

Pro-rich

pfam15240

Proline-rich protein; This family includes several eukaryotic proline-rich proteins.

453-578

3.95e-04

Proline-rich protein; This family includes several eukaryotic proline-rich proteins.

Pssm-ID: 464580 [Multi-domain] Cd Length: 167 Bit Score: 43.87 E-value: 3.95e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEP 532
Cdd:pfam15240   36 EGQSQQGGQGPQGPPPGGFPPQPPASDDPPGPPPPGGPQQPPPQGGKQKPQGPPPQGGPRPPPGKPQGPPPQGGNQQQGP 115

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 30984464    533 PTPNPEGAPAPSSNEQPPAAASTdeatqkaldalrdRQPPEPPCGS 578
Cdd:pfam15240  116 PPPGKPQGPPPQGGGPPPQGGNQ-------------QGPPPPPPGN 148

PHA03307

transcriptional regulator ICP4; Provisional

358-584

3.98e-04

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 46.32 E-value: 3.98e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   358 PPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFsrGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPtpgappt 437
Cdd:PHA03307   31 AADDLLSGSQGQLVSDSAELAAVTVVAGAAACDRF--EPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPA------- 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   438 pgaPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPA 517
Cdd:PHA03307  102 ---REGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSS 178

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30984464   518 GRPPTPANPTASSEPPT-PNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPCGSLTELLG 584
Cdd:PHA03307  179 PEETARAPSSPPAEPPPsTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSG 246

PRK14948

DNA polymerase III subunit gamma/tau;

475-557

5.14e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 45.72 E-value: 5.14e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   475 TASSEPPTPAGRPPTPAGRPPTPAnPTASSEPPTPAGRPPTPAGRPPtPANPTASSEPPTPNPEGAPAPSSNEQPPAAAS 554
Cdd:PRK14948  512 SQSGSASNTAKTPPPPQKSPPPPA-PTPPLPQPTATAPPPTPPPPPP-TATQASSNAPAQIPADSSPPPPIPEEPTPSPT 589


                  ...
gi 30984464   555 TDE 557
Cdd:PRK14948  590 KDS 592

PRK10856

cytoskeleton protein RodZ;

471-554

5.17e-04

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 45.02 E-value: 5.17e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   471 AGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAG-RPPTPANPTASSEPPTPNPegAPAPSSNEQP 549
Cdd:PRK10856  169 TTDPATTPAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQANvDTAATPAPAAPATPDGAAP--LPTDQAGVST 246


                  ....*
gi 30984464   550 PAAAS 554
Cdd:PRK10856  247 PAADP 251

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

454-545

5.53e-04

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 45.53 E-value: 5.53e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTassepPTPAGPTTASSEPPTPAGRPPTPagrPPTPANPTASSEPPTPAgrpPTPAGRPPTPaNPTASSEPP 533
Cdd:NF033839  281 QDTPKEPGN-----KKPSAPKPGMQPSPQPEKKEVKP---EPETPKPEVKPQLEKPK---PEVKPQPEKP-KPEVKPQLE 348

                          90
                  ....*....|..
gi 30984464   534 TPNPEGAPAPSS 545
Cdd:NF033839  349 TPKPEVKPQPEK 360

PRK12323

DNA polymerase III subunit gamma/tau;

338-526

5.73e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 45.64 E-value: 5.73e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   338 PRPNQHYPLGFSKRRRPTWTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRP 417
Cdd:PRK12323  385 PAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARP 464

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   418 PTPGAPPTPGapptPGAPPTPGAPPTPAGPTTASSEPP---TPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRP 494
Cdd:PRK12323  465 AAAGPRPVAA----AAAAAPARAAPAAAPAPADDDPPPweeLPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFET 540

                         170       180       190
                  ....*....|....*....|....*....|..
gi 30984464   495 PTPAnPTASSEPPTPAGRPPTPAGRPPTPANP 526
Cdd:PRK12323  541 LAPA-PAAAPAPRAAAATEPVVAPRPPRASAS 571

PRK14948

DNA polymerase III subunit gamma/tau;

451-532

6.68e-04

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 45.34 E-value: 6.68e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:PRK14948  513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTKDS 592


                  ..
gi 30984464   531 EP 532
Cdd:PRK14948  593 SP 594

PRK10905

cell division protein DamX; Validated

461-562

7.16e-04

cell division protein DamX; Validated

Pssm-ID: 236792 [Multi-domain] Cd Length: 328 Bit Score: 44.54 E-value: 7.16e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   461 TTASSEPPTPAgPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPagrPPTPANPTASSEPPTPN-PEG 539
Cdd:PRK10905  121 STLPTEPATVA-PVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTE---PKPVAQTPKRTEPAAPVaSTK 196

                          90       100
                  ....*....|....*....|...
gi 30984464   540 APAPSSNEQPPAAASTDEATQKA 562
Cdd:PRK10905  197 APAATSTPAPKETATTAPVQTAS 219

MISS

pfam15822

MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic ...

376-554

7.42e-04

MAPK-interacting and spindle-stabilising protein-like; MISS is a family of eukaryotic MAPK-interacting and spindle-stabilising protein-like proteins. MISS is rich in prolines and has four potential MAPK-phosphorylation sites, a MAPK-docking site, a PEST sequence (PEST motif) and a bipartite nuclear localization signal. The endogenous protein accumulates during mouse meiotic maturation and is found as discrete dots on the MII spindle. MISS is the first example of a physiological MAPK-substrate that is stabilized in MII that specifically regulates MII spindle integrity during the CSF arrest.

Pssm-ID: 318115 [Multi-domain] Cd Length: 238 Bit Score: 44.21 E-value: 7.42e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    376 SLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPP 455
Cdd:pfam15822   44 AVPSGLPPSTAPSTVPFGPAPTGMYPSIPLTGPSPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPIGPYPTPNMPFPELP 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    456 TPAGPTT--ASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGR-PPTPANPTASSEP 532
Cdd:pfam15822  124 RPYGAPTdpAAAAPSGPWGSMSSGPWAPGMGGQYPAPNMPYPSPGPYPAVPPPQSPGAAPPVPWGTvPPGPWGPPAPYPD 203

                          170       180
                   ....*....|....*....|....*
gi 30984464    533 PT---PNPEGAPAPSSNEQPPAAAS 554
Cdd:pfam15822  204 PTgsyPMPGLYPTPNNPFQVPSGPS 228

Pneumo_att_G

pfam05539

Pneumovirinae attachment membrane glycoprotein G;

451-561

7.48e-04

Pneumovirinae attachment membrane glycoprotein G;

Pssm-ID: 114270 [Multi-domain] Cd Length: 408 Bit Score: 45.04 E-value: 7.48e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSEPPTPAGPTTASSEPPTPAGPTTASSeppTPAGRPPTPAGRPPTPANPTASSEP-PTPAGRPPTPAGRPPTPA---NP 526
Cdd:pfam05539  184 VSHPTYPSQVTPQSQPATQGHQTATANQ---RLSSTEPVGTQGTTTSSNPEPQTEPpPSQRGPSGSPQHPPSTTSqdqST 260

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 30984464    527 TASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQK 561
Cdd:pfam05539  261 TGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKR 295

PTZ00436

60S ribosomal protein L19-like protein; Provisional

456-565

7.49e-04

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 44.94 E-value: 7.49e-04

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   456 TPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPAN--PTASSEPPTPAGRPPTPAGRPPTPANPTASSEPP 533
Cdd:PTZ00436  232 AAAPPAKAAAAPAKAAAAPAKAAAPPAKAAAPPAKAAAPPAKAAapPAKAAAPPAKAAAPPAKAAAAPAKAAAAPAKAAA 311

                          90       100       110
                  ....*....|....*....|....*....|..
gi 30984464   534 TPNPEGAPaPSSNEQPPAAASTDEATQKALDA 565
Cdd:PTZ00436  312 APAKAAAP-PAKAAAPPAKAATPPAKAAAPPA 342

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

451-558

9.06e-04

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 44.95 E-value: 9.06e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSEPPTPAGPTTASSEPPT---PAGPTTASSEPPTPAGRPPTPAG-RPPTPANPTASSEPPTPAGRPPTPAGRPP----T 522
Cdd:pfam17823  128 QSLPAAIAALPSEAFSAPRaaaCRANASAAPRAAIAAASAPHAASpAPRTAASSTTAASSTTAASSAPTTAASSApatlT 207

                           90       100       110
                   ....*....|....*....|....*....|....*.
gi 30984464    523 PANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEA 558
Cdd:pfam17823  208 PARGISTAATATGHPAAGTALAAVGNSSPAAGTVTA 243

Herpes_BLLF1

pfam05109

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...

465-554

9.46e-04

Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.91 E-value: 9.46e-04

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    465 SEPPTPAGPTTASSEPPTPAGRP-----PTPAGRPPT--PANPTASSEPPTPAG-----RPPTPAGRP---------PTP 523
Cdd:pfam05109  427 STTTSPTLNTTGFAAPNTTTGLPssthvPTNLTAPAStgPTVSTADVTSPTPAGttsgaSPVTPSPSPrdngteskaPDM 506

                           90       100       110
                   ....*....|....*....|....*....|.
gi 30984464    524 ANPTASSEPPTPNPEgAPAPSSNEQPPAAAS 554
Cdd:pfam05109  507 TSPTSAVTTPTPNAT-SPTPAVTTPTPNATS 536

COG3903

Predicted ATPase [General function prediction only];

1573-1990

9.93e-04

Predicted ATPase [General function prediction only];

Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 45.01 E-value: 9.93e-04

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1573 ELCDRLDALRADVHRALGGVPLDLAAAAEQTVRLRGDPAAAAELVRTGVTLACPSEDALAACVGALERVDQAPVKDTAYA 1652
Cdd:COG3903  524 EHDNLRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAA 603

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1653 EHVAFVARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTLEQARSV 1732
Cdd:COG3903  604 AAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAA 683

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1733 AEivdqiellLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARDGSPDPLARLHARLDALGETRRRTAALRRSLEAAEA 1812
Cdd:COG3903  684 AA--------ALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAA 755

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1813 EWDEVWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQGAIGAKSAERAGAVEELGVAVER 1892
Cdd:COG3903  756 AAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALA 835

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1893 HDGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQTGAGGTPPPA 1972
Cdd:COG3903  836 AAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAA 915

                        410
                 ....*....|....*...
gi 30984464 1973 PAPLLVDVRALEARARSP 1990
Cdd:COG3903  916 ALAAAAAAAAAAAAAAAA 933

PRK14948

DNA polymerase III subunit gamma/tau;

456-538

1.12e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 44.57 E-value: 1.12e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   456 TPAGPTTASSEPPTPAGPTTASSEPPTPagrPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTP 535
Cdd:PRK14948  514 SGSASNTAKTPPPPQKSPPPPAPTPPLP---QPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590


                  ...
gi 30984464   536 NPE 538
Cdd:PRK14948  591 DSS 593

DUF4045

pfam13254

Domain of unknown function (DUF4045); This presumed domain is functionally uncharacterized. ...

452-572

1.25e-03

Pssm-ID: 433066 [Multi-domain] Cd Length: 415 Bit Score: 44.39 E-value: 1.25e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    452 SEPPTPAgPTTASSEPPTPAGPTTASSEPPTPAGRPPTPagrpPTPANPTASSEPPTPAGRpptpagRPPTPANPTASSE 531
Cdd:pfam13254  247 DKEQSPA-PTSASEPPPKTKELPKDSEEPAAPSKSAEAS----TEKKEPDTESSPETSSEK------SAPSLLSPVSKAS 315

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 30984464    532 PPTPNPEGAPAPSSNEQPPAAASTDEATQkaldaLRDRQPP 572
Cdd:pfam13254  316 IDKPLSSPDRDPLSPKPKPQSPPKDFRAN-----LRSREVP 351

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

455-535

1.26e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 44.29 E-value: 1.26e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRpptpANPTASSEPPT 534
Cdd:PTZ00144  120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVAR----ADPRETRVPMS 195


                  .
gi 30984464   535 P 535
Cdd:PTZ00144  196 R 196

PRK07003

DNA polymerase III subunit gamma/tau;

454-581

1.32e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 44.46 E-value: 1.32e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTP----ANPTASSEPPTPAGRPPTPAGRPPTPANPTAS 529
Cdd:PRK07003  383 PGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPpaapAPPATADRGDDAADGDAPVPAKANARASADSR 462

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 30984464   530 SEPPTPNPEGAPAPSS---NEQPPAAASTDE--ATQKALDALRDRQPPEPPCGSLTE 581
Cdd:PRK07003  463 CDERDAQPPADSGSASapaSDAPPDAAFEPAprAAAPSAATPAAVPDARAPAAASRE 519

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

401-575

1.32e-03

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteriztic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.76 E-value: 1.32e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    401 QTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEP 480
Cdd:pfam03154  168 QTQPPVLQAQSGAASPPSPPPPGTTQAATAGPTPSAPSVPPQGSPATSQPPNQTQSTAAPHTLIQQTPTLHPQRLPSPHP 247

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    481 P-TPAGRPPTPAGRPPTPANPTASSEPPTPAGRP----------PTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQP 549
Cdd:pfam03154  248 PlQPMTQPPPPSQVSPQPLPQPSLHGQMPPMPHSlqtgpshmqhPVPPQPFPLTPQSSQSQVPPGPSPAAPGQSQQRIHT 327

                          170       180
                   ....*....|....*....|....*.
gi 30984464    550 PAAASTDEATQKAldalrdRQPPEPP 575
Cdd:pfam03154  328 PPSQSQLQSQQPP------REQPLPP 347

PTZ00436

60S ribosomal protein L19-like protein; Provisional

458-565

1.44e-03

60S ribosomal protein L19-like protein; Provisional

Pssm-ID: 185616 [Multi-domain] Cd Length: 357 Bit Score: 43.79 E-value: 1.44e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   458 AGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPAN--PTASSEPPTPAGRPPTPAGRPPTPAnptasSEPPTp 535
Cdd:PTZ00436  220 AAPAKAAAAPAKAAAPPAKAAAAPAKAAAAPAKAAAPPAKAAapPAKAAAPPAKAAAPPAKAAAPPAKA-----AAPPA- 293

                          90       100       110
                  ....*....|....*....|....*....|
gi 30984464   536 npEGAPAPSSNEQPPAAASTDEATQKALDA 565
Cdd:PTZ00436  294 --KAAAAPAKAAAAPAKAAAAPAKAAAPPA 321

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

340-572

1.51e-03

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.37 E-value: 1.51e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    340 PNQHYPLgfskRRRPTWTPPS--SLEDLSAGRHHPKRASLPTRTRRSARHAATPF-SRGSGGDEQTRPAAGPRPPTPASR 416
Cdd:pfam03154  243 PSPHPPL----QPMTQPPPPSqvSPQPLPQPSLHGQMPPMPHSLQTGPSHMQHPVpPQPFPLTPQSSQSQVPPGPSPAAP 318

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    417 PPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTT------ASSEPPTPAGPT---TASSEPPTPAGRP 487
Cdd:pfam03154  319 GQSQQRIHTPPSQSQLQSQQPPREQPLPPAPLSMPHIKPPPTTPIPqlpnpqSHKHPPHLSGPSpfqMNSNLPPPPALKP 398

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    488 --------PTPAGRPPTPANPTASSEPPTPA---------GRPPTPAGRPPTPANPTASSEPPTPN----PEGAPAPSSN 546
Cdd:pfam03154  399 lsslsthhPPSAHPPPLQLMPQSQQLPPPPAqppvltqsqSLPPPAASHPPTSGLHQVPSQSPFPQhpfvPGGPPPITPP 478

                          250       260
                   ....*....|....*....|....*.
gi 30984464    547 EQPPAAASTdeatqkaldALRDRQPP 572
Cdd:pfam03154  479 SGPPTSTSS---------AMPGIQPP 495

EntF

COG1020

EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites ...

734-1192

1.62e-03

EntF, seryl-AMP synthase component of non-ribosomal peptide synthetase [Secondary metabolites biosynthesis, transport and catabolism];

Pssm-ID: 440643 [Multi-domain] Cd Length: 1329 Bit Score: 44.46 E-value: 1.62e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  734 ELAELERRLRATPP-TEVYArlsewLLERSKAGPDTLFAPATPTHPEPLLQRIQALAGFARREEVRAAAEDREVRGALDA 812
Cdd:COG1020  884 ELGEIEAALLQHPGvREAVV-----VAREDAPGDKRLVAYVVPEAGAAAAAALLRLALALLLPPYMVPAAVVLLLPLPLT 958

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  813 LARGVDAVARRSGPLTVAAVSPEEPGEgggrphplsPEAIRVRLEQLRADGQKAVEGATREYFHRGAVYSAKALLAGDAR 892
Cdd:COG1020  959 GNGKLDRLALPAPAAAAAAAAAAPPAE---------EEEEEAALALLLLLVVVVGDDDFFFFGGGLGLLLLLALARAARL 1029

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  893 DRRYHVASAPVVPVVQLLESLPAFDAHVQEVARRARVPAPPPLATSPPAELLRELVQRGRDLEAPADLAAWLASLGDAAG 972
Cdd:COG1020 1030 LLLLLLLLLLFLAAAAAAAAAAAAAAAAAAAAPLAAAAAPLPLPPLLLSLLALLLALLLLLALLALLALLLLLLLLLLLL 1109

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  973 QGLVVRKELDELAQAIYKINERTVRRSSGLAELERFEALDAALRGELESEAAFEPGGGDGAAAGGLPAETRRLAEDALHQ 1052
Cdd:COG1020 1110 ALLLLLALLLALLAALRARRAVRQEGPRLRLLVALAAALALAALLALLLAAAAAAAELLAAAALLLLLALLLLALLLLLL 1189

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1053 AKAMAAAKLTDELSPEARERLAARVRAIEAMLEEARARAEAAKAALARFFQKLQGVLRPLPDFGGLRVAPAVLATLRADI 1132
Cdd:COG1020 1190 LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLAAAAAALLALALLLALLALAALLALAALAALAAALLALALALLAL 1269

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1133 PGGWTCLPDAAQAAPPEVRAALRADLWGLLGQYRGALEHPTADTAAALSGLHPNFAEVLR 1192
Cdd:COG1020 1270 ALLLLALALLLPALARARAARTARALALLLLLALLLLLALALALLLLLLLLLALLLLALL 1329

PRK11633

cell division protein DedD; Provisional

454-567

1.62e-03

cell division protein DedD; Provisional

Pssm-ID: 236940 [Multi-domain] Cd Length: 226 Bit Score: 42.68 E-value: 1.62e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTassePPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPagrPPTPagrPPTPANPTASSEPP 533
Cdd:PRK11633   58 AATQALPTQ----PPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKP---KPVE---KPKPKPKPQQKVEA 127

                          90       100       110
                  ....*....|....*....|....*....|....
gi 30984464   534 TPNPEGAPAPSSNEQPpaaASTDEATQKALDALR 567
Cdd:PRK11633  128 PPAPKPEPKPVVEEKA---APTGKAYVVQLGALK 158

Atrophin-1

pfam03154

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...

451-564

1.64e-03

Pssm-ID: 460830 [Multi-domain] Cd Length: 991 Bit Score: 44.37 E-value: 1.64e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPP-TPAGRPPT------PAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTP 523
Cdd:pfam03154  444 AASHPPTSGLHQVPSQSPFPQHPFVPGGPPPiTPPSGPPTstssamPGIQPPSSASVSSSGPVPAAVSCPLPPVQIKEEA 523

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 30984464    524 ANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALD 564
Cdd:pfam03154  524 LDEAEEPESPPPPPRSPSPEPTVVNTPSHASQSARFYKHLD 564

PHA02682

ORF080 virion core protein; Provisional

455-568

1.66e-03

ORF080 virion core protein; Provisional

Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 43.31 E-value: 1.66e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPA-GPTTASSEPPTPAGPTTASSEPPTpagrPPTPAGRPPTPANPTASsepPTPAGRPPTPAGRPPTPANPTASsepp 533
Cdd:PHA02682  112 PAPAcPPATAPTCPPPAVCPAPARPAPAC----PPSTRQCPPAPPLPTPK---PAPAAKPIFLHNQLPPPDYPAAS---- 180

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*.
gi 30984464   534 TPNPEGAPAPSSNEQP-------PAAASTDEATQKAL----DALRD 568
Cdd:PHA02682  181 CPTIETAPAASPVLEPripdkiiDADNDDKDLIKKELadiaDSVRD 226

PHA03255

BDLF3; Provisional

457-544

1.69e-03

BDLF3; Provisional

Pssm-ID: 165513 [Multi-domain] Cd Length: 234 Bit Score: 42.97 E-value: 1.69e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   457 PAGPTTASSEPPTPAGPTTASSEPPTPAGrpptPAGRPPTPANPTASSEPPTPAGRPPTPAGR-PPTPANPTAS------ 529
Cdd:PHA03255   89 TPVPTTSNASTINVTTKVTAQNITATEAG----TGTSTGVTSNVTTRSSSTTSATTRITNATTlAPTLSSKGTSnatktt 164

                          90
                  ....*....|....*
gi 30984464   530 SEPPTPNPEGAPAPS 544
Cdd:PHA03255  165 AELPTVPDERQPSLS 179

PRK12495

hypothetical protein; Provisional

454-539

1.76e-03

hypothetical protein; Provisional

Pssm-ID: 183558 [Multi-domain] Cd Length: 226 Bit Score: 42.93 E-value: 1.76e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   454 PPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPtPAGRPPTPANPTASSEPP 533
Cdd:PRK12495   96 PDDDAQPAAEAEAADQSAPPEASSTSATDEAATDPPATAAARDGPTPDPTAQPATPDERRS-PRQRPPVSGEPPTPSTPD 174


                  ....*.
gi 30984464   534 TPNPEG 539
Cdd:PRK12495  175 AHVAGT 180

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

451-508

1.77e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 43.90 E-value: 1.77e-03

                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAgpttASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 508
Cdd:PTZ00144  136 KAEKTTPEKPKAAAPTPEPPA----ASKPTPPAAAKPPEPAPAAKPPPTPVARADPRE 189

PHA00666

putative protease

461-564

1.83e-03

putative protease

Pssm-ID: 222808 [Multi-domain] Cd Length: 233 Bit Score: 42.72 E-value: 1.83e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   461 TTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPanptaSSEPPTPAGRPPTPAGRPPTPaNPTASSEPPTPNPEGA 540
Cdd:PHA00666   10 RRLCNEQPGDGGSQPAASEPAAGAGDNPAPQGDPTQE-----EGDKPQPAAGADKPEGDKKAD-GDKPEEKKPGEKPEGA 83

                          90       100
                  ....*....|....*....|....
gi 30984464   541 PApSSNEQPPAAASTDEATQKALD 564
Cdd:PHA00666   84 PE-KYEFQAAEGVELDTGALGAFE 106

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

455-543

1.85e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.85e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTA-SSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPtassEPPTPAGRP----PTPAGRP-PTPANPTA 528
Cdd:NF033839  290 KKPSAPKPGmQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQP----EKPKPEVKPqletPKPEVKPqPEKPKPEV 365

                          90
                  ....*....|....*
gi 30984464   529 SSEPPTPNPEGAPAP 543
Cdd:NF033839  366 KPQPEKPKPEVKPQP 380

PRK10856

cytoskeleton protein RodZ;

451-533

1.87e-03

cytoskeleton protein RodZ;

Pssm-ID: 236776 [Multi-domain] Cd Length: 331 Bit Score: 43.48 E-value: 1.87e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPA-GPTTASSEPPTPAGRPPTPAGRPPTPAN-PTASSEPPTPAGRPPTPAGRPPTPANPTA 528
Cdd:PRK10856  167 STTTDPATTPAPAAPVDTTPTnSQTPAVATAPAPAVDPQQNAVVAPSQANvDTAATPAPAAPATPDGAAPLPTDQAGVST 246


                  ....*
gi 30984464   529 SSEPP 533
Cdd:PRK10856  247 PAADP 251

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

453-574

1.95e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.99 E-value: 1.95e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   453 EPPTPAGPTTASSEPPTPagptTASSEPPTPAGRP-PTPAGR----PPTPANPTASSEP----PTPAGRP----PTPAGR 519
Cdd:NF033839  302 SPQPEKKEVKPEPETPKP----EVKPQLEKPKPEVkPQPEKPkpevKPQLETPKPEVKPqpekPKPEVKPqpekPKPEVK 377

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   520 P-PTPANPTASSEPPTPNPEGAPAPssnEQPPAAASTDEATQKAlDALRDRQPPEP 574
Cdd:NF033839  378 PqPETPKPEVKPQPEKPKPEVKPQP---EKPKPEVKPQPEKPKP-EVKPQPEKPKP 429

PAT1

pfam09770

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...

451-550

1.97e-03

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.

Pssm-ID: 401645 [Multi-domain] Cd Length: 846 Bit Score: 43.87 E-value: 1.97e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:pfam09770  207 AKKPAQQPAPAPAQPPAAPPAQQAQQQQQFPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQ 286

                           90       100
                   ....*....|....*....|
gi 30984464    531 EPPTPNPEGAPAPSSNEQPP 550
Cdd:pfam09770  287 QFHQQPPPVPVQPTQILQNP 306

MukB

COG3096

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ...

1649-1962

1.97e-03

Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.17 E-value: 1.97e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1649 TAY--AEHVAFVARRD-----LGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAE------SLANLKTLLR- 1714
Cdd:COG3096  266 TNYvaADYMRHANERRelserALELRRELFGARRQLAEEQYRLVEMARELEELSARESDLEQDyqaasdHLNLVQTALRq 345

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1715 -------VAAIPAAAAKTLEQARSVAEIVDQIELLLEQTEKAAE---------------LD---------QAAVDWLEHA 1763
Cdd:COG3096  346 qekieryQEDLEELTERLEEQEEVVEEAAEQLAEAEARLEAAEEevdslksqladyqqaLDvqqtraiqyQQAVQALEKA 425

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1764 RRVFEAHPLTAarDGSPDPLARLHARLDALGETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAWKSpEALGAAREQLR 1843
Cdd:COG3096  426 RALCGLPDLTP--ENAEDYLAAFRAKEQQATEEVLELEQKLSVADAARRQFEKAYELVCKIAGEVERS-QAWQTARELLR 502

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1844 alqtatntvlglvaDAHYPRLPAKYQGAIGAKSAERAGAVEELGVAVERHDGLLARLREDVVArvpwemnADALGRLLAE 1923
Cdd:COG3096  503 --------------RYRSQQALAQRLQQLRAQLAELEQRLRQQQNAERLLEEFCQRIGQQLDA-------AEELEELLAE 561

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 30984464 1924 FDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQ 1962
Cdd:COG3096  562 LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAAR 600

PHA03381

tegument protein VP22; Provisional

452-554

2.28e-03

tegument protein VP22; Provisional

Pssm-ID: 177618 [Multi-domain] Cd Length: 290 Bit Score: 43.08 E-value: 2.28e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTASSEPPTPAGPTTASSEPPTPaGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PHA03381   69 ADYPYYTGSSSEDERPADPRPSRRPHAQPEAS-GPGPARGARGPAGSRGRGRRAESPSPRDPPNPKGASAPRGRKSACAD 147

                          90       100
                  ....*....|....*....|...
gi 30984464   532 PPTPNPEGAPAPSSNEQPPAAAS 554
Cdd:PHA03381  148 SAALLDAPAPAAPKRQKTPAGLA 170

KREPA2

cd23959

Kinetoplastid RNA Editing Protein A2 (KREPA2); The KREPA2 (TbMP63) protein is a component of ...

453-576

2.42e-03

Pssm-ID: 467780 [Multi-domain] Cd Length: 424 Bit Score: 43.32 E-value: 2.42e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  453 EPPTPAGPTTASSEPPTPagPTTASSEPPTPaGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEP 532
Cdd:cd23959  128 ETHKTAQVAPPKAEPQTA--PVTPFGQLPMF-GQHPPPAKPLPAAAAAQQSSASPGEVASPFASGTVSASPFATATDTAP 204

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 30984464  533 PTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEPPC 576
Cdd:cd23959  205 SSGAPDGFPAEASAPSPFAAPASAASFPAAPVANGEAATPTHAC 248

PRK08691

DNA polymerase III subunits gamma and tau; Validated

451-577

2.54e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 43.54 E-value: 2.54e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   451 SSEPPTPAGPTTASSEPPTPAGPT------TASSEPPTPAGRPPTPAGR------PPTPANPtasSEPPTPAGRPPTPA- 517
Cdd:PRK08691  379 SPSAQTAEKETAAKKPQPRPEAETaqtpvqTASAAAMPSEGKTAGPVSNqenndvPPWEDAP---DEAQTAAGTAQTSAk 455

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   518 -----GRPPTPANPTASSEPPTPNPEGAP-APSSNEQPPAAASTDEATQKALDALRDRQPPEPPCG 577
Cdd:PRK08691  456 siqtaSEAETPPENQVSKNKAADNETDAPlSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYG 521

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

474-546

2.74e-03

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.96 E-value: 2.74e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464    474 TTASSEPPTPAGRPPTPAgrPPTPANPTASSEPPTPAGRPPtpaGRPPTPANPTASSEPPTPN-PEGAPAPSSN 546
Cdd:TIGR00601   81 TGKVAPPAATPTSAPTPT--PSPPASPASGMSAAPASAVEE---KSPSEESATATAPESPSTSvPSSGSDAAST 149

PHA03307

transcriptional regulator ICP4; Provisional

351-558

2.75e-03

transcriptional regulator ICP4; Provisional

Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 43.62 E-value: 2.75e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   351 RRRPTWTPPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPP 430
Cdd:PHA03307   64 RFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGS 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   431 TPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEPP--TPAGRPPTPAGRPPTPANPTASSEPPT 508
Cdd:PHA03307  144 PGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPpsTPPAAASPRPPRRSSPISASASSPAPA 223

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30984464   509 PA-------------------------GRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEA 558
Cdd:PHA03307  224 PGrsaaddagasssdssssessgcgwgPENECPLPRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSP 298

PRK12438

hypothetical protein; Provisional

497-570

2.81e-03

hypothetical protein; Provisional

Pssm-ID: 171499 [Multi-domain] Cd Length: 991 Bit Score: 43.70 E-value: 2.81e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464   497 PANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNpegAPAPSSNEQPPAAAStdeATQKALDALRDRQ 570
Cdd:PRK12438  897 PGTGRVATAPGGDAASAPPPGAGPPAPPQAVPPPRTTQPP---AAPPRGPDVPPAAVA---ELRETLADLRSAQ 964

PRK08691

DNA polymerase III subunits gamma and tau; Validated

460-627

2.84e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 43.54 E-value: 2.84e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   460 PTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRP-PTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEppTPNPE 538
Cdd:PRK08691  360 PLAAASCDANAVIENTELQSPSAQTAEKETAAKKPqPRPEAETAQTPVQTASAAAMPSEGKTAGPVSNQENND--VPPWE 437

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   539 GAPAPSSNEQPPAAASTdEATQKAldalrdRQPPEPPCGSLTELLGRHPDTDGGVSRLAAHEAGIAREVTECSRLTINAL 618
Cdd:PRK08691  438 DAPDEAQTAAGTAQTSA-KSIQTA------SEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAH 510


                  ....*....
gi 30984464   619 RSPFPGSPG 627
Cdd:PRK08691  511 EAPAEPFYG 519

SAV_2336_NTERM

SAV_2336 family N-terminal domain; This HMM describes an N-terminal domain shared by SAV_2336 ...

494-575

2.97e-03

Pssm-ID: 469044 [Multi-domain] Cd Length: 473 Bit Score: 43.07 E-value: 2.97e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   494 PPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPE 573
Cdd:NF041121   16 GRAAAPPSPEGPAPTAASQPATPPPPAAPPSPPGDPPEPPAPEPAPLPAPYPGSLAPPPPPPPGPAGAAPGAALPVRVPA 95


                  ..
gi 30984464   574 PP 575
Cdd:NF041121   96 PP 97

PRK14959

DNA polymerase III subunits gamma and tau; Provisional

455-549

2.99e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 43.13 E-value: 2.99e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE-PP 533
Cdd:PRK14959  398 PTPGTQGPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVPGAPDSVASASDaPP 477

                          90
                  ....*....|....*.
gi 30984464   534 TPNPEGAPAPSSNEQP 549
Cdd:PRK14959  478 TLGDPSDTAEHTPSGP 493

PHA03377

EBNA-3C; Provisional

455-574

3.05e-03

EBNA-3C; Provisional

Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 43.50 E-value: 3.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGR------------------------------------------------ 486
Cdd:PHA03377  468 LTPVEHTTVILHQPPQSPPTVAIKPAPPPSRRrrgacvvydddiievidvetteeeesvtqpakphrkvqdgfqrsgrrq 547

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   487 ----PPT--PAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNE-QPPAAASTDEAT 559
Cdd:PHA03377  548 kratPPKvsPSDRGPPKASPPVMAPPSTGPRVMATPSTGPRDMAPPSTGPRQQAKCKDGPPASGPHEkQPPSSAPRDMAP 627

                         170
                  ....*....|....*
gi 30984464   560 QKALDALRDRQPPEP 574
Cdd:PHA03377  628 SVVRMFLRERLLEQS 642

PHA03264

envelope glycoprotein D; Provisional

480-554

3.07e-03

envelope glycoprotein D; Provisional

Pssm-ID: 223029 [Multi-domain] Cd Length: 416 Bit Score: 43.07 E-value: 3.07e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   480 PPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE-----------PPTPNPEGAPA-PSSNE 547
Cdd:PHA03264  267 PPAPSGGSPAPPGDDRPEAKPEPGPVEDGAPGRETGGEGEGPEPAGRDGAAGgepkpgpprpaPDADRPEGWPSlEAITF 346


                  ....*..
gi 30984464   548 QPPAAAS 554
Cdd:PHA03264  347 PPPTPAT 353

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

390-595

3.19e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 43.22 E-value: 3.19e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   390 TPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAgpTTASSEPPT 469
Cdd:NF033839  283 TPKEPGNKKPSAPKPGMQPSPQPEKKEVKPEPETPKPEVKPQLEKPKPEVKPQPEKPKPEVKPQLETPK--PEVKPQPEK 360

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   470 PAGPTTASSEPPTPAGRP----PTPAGRP-PTPANPTASSEP--PTPAGRP----PTPAGRP-PTPANPTASSEPPTPNP 537
Cdd:NF033839  361 PKPEVKPQPEKPKPEVKPqpetPKPEVKPqPEKPKPEVKPQPekPKPEVKPqpekPKPEVKPqPEKPKPEVKPQPEKPKP 440

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464   538 EGAPAPSSN--EQPPAAASTDEATQKALDALRDRQPPEP----PCGSLTELLGRHPDTDGGVSR 595
Cdd:NF033839  441 EVKPQPEKPkpEVKPQPETPKPEVKPQPEKPKPEVKPQPekpkPDNSKPQADDKKPSTPNNLSK 504

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

451-509

3.31e-03

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.96 E-value: 3.31e-03

                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 30984464    451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRP---PTPANPTASSEPPTP 509
Cdd:TIGR00601   83 KVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESataTAPESPSTSVPSSGS 144

YhaN

COG4717

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];

1565-1962

3.75e-03

Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];

Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.83 E-value: 3.75e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1565 RRGHAEYLELCDRLDALRADVHRALggvplDLAAAAEQTVRLRGDPAAAAELVRTGVTLacpsEDALAACVGALERVDQa 1644
Cdd:COG4717   84 EEKEEEYAELQEELEELEEELEELE-----AELEELREELEKLEKLLQLLPLYQELEAL----EAELAELPERLEELEE- 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1645 pvKDTAYAEhvafvARRDLGEAKDALVRAKQQRAEATDRVTAALREALAAHERQARSEAESLANLKTLLRVAAipaaaak 1724
Cdd:COG4717  154 --RLEELRE-----LEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQ------- 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1725 tlEQARSVAEIVDQIELLLEQTEKAAELDQAAVDWL-------------EHARRVFEAHPLTAARDGSPDPLARLHARLD 1791
Cdd:COG4717  220 --EELEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggSLLSLILTIAGVLFLVLGLLALLFLLLAREK 297

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1792 ALGETRRRTAALRRSLEA-AEAEWDEVWARFGRARGgawKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQ- 1869
Cdd:COG4717  298 ASLGKEAEELQALPALEElEEEELEELLAALGLPPD---LSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAa 374

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1870 --GAIGAKSAE----RAGAVEELGVAVERHDGLLARLRE------DVVARVPWEMNADALGRLLAEFDALAEDLtpwavD 1937
Cdd:COG4717  375 llAEAGVEDEEelraALEQAEEYQELKEELEELEEQLEEllgeleELLEALDEEELEEELEELEEELEELEEEL-----E 449

                        410       420
                 ....*....|....*....|....*...
gi 30984464 1938 EFRGARALVQHRLGLYS---AYAKARAQ 1962
Cdd:COG4717  450 ELREELAELEAELEQLEedgELAELLQE 477

PLN02983

biotin carboxyl carrier protein of acetyl-CoA carboxylase

453-521

3.77e-03

biotin carboxyl carrier protein of acetyl-CoA carboxylase

Pssm-ID: 215533 [Multi-domain] Cd Length: 274 Bit Score: 42.13 E-value: 3.77e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30984464   453 EPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTA--SSEPP--TP-AG---RPPTPaGRPP 521
Cdd:PLN02983  143 QPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKApkSSHPPlkSPmAGtfyRSPAP-GEPP 218

PHA02682

ORF080 virion core protein; Provisional

493-575

3.95e-03

ORF080 virion core protein; Provisional

Pssm-ID: 177464 [Multi-domain] Cd Length: 280 Bit Score: 42.16 E-value: 3.95e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   493 RPPTPANPTAssepPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPP 572
Cdd:PHA02682   74 QRPSGQSPLA----PSPACAAPAPACPACAPAAPAPAVTCPAPAPACPPATAPTCPPPAVCPAPARPAPACPPSTRQCPP 149


                  ...
gi 30984464   573 EPP 575
Cdd:PHA02682  150 APP 152

rad23

UV excision repair protein Rad23; All proteins in this family for which functions are known ...

461-530

4.01e-03

Pssm-ID: 273167 [Multi-domain] Cd Length: 378 Bit Score: 42.57 E-value: 4.01e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    461 TTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:TIGR00601   80 GTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAAST 149

PRK12373

NADH-quinone oxidoreductase subunit E;

460-569

4.05e-03

NADH-quinone oxidoreductase subunit E;

Pssm-ID: 237082 [Multi-domain] Cd Length: 400 Bit Score: 42.48 E-value: 4.05e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   460 PTTASSEPPTPAGPTTA---SSEPPTPAGRPPTPAGRPPTPANPTASSEPPT-PAGRPPTPAGRPPTpANPTASSEPPTP 535
Cdd:PRK12373  205 RYNASKALAEDIGDTVKridGTEVPLLAPWQGDAAPVPPSEAARPKSADAETnAALKTPATAPKAAA-KNAKAPEAQPVS 283

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 30984464   536 NPEGA-PAPSSNEQPPAAASTDEATQKALDALRDR 569
Cdd:PRK12373  284 GTAAAePAPKEAAKAAAAAAKPALEDKPRPLGIAR 318

PRK14948

DNA polymerase III subunit gamma/tau;

457-537

4.29e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 42.64 E-value: 4.29e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   457 PAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPagrpPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPN 536
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA----PKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAP 436


                  .
gi 30984464   537 P 537
Cdd:PRK14948  437 P 437

Chi1

COG3469

Chitinase [Carbohydrate transport and metabolism];

451-537

4.70e-03

Chitinase [Carbohydrate transport and metabolism];

Pssm-ID: 442692 [Multi-domain] Cd Length: 534 Bit Score: 42.43 E-value: 4.70e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  451 SSEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:COG3469  124 STTSSTAGSTTTSGASATSSAGSTTTTTTVSGTETATGGTTTTSTTTTTTSASTTPSATTTATATTASGATTPSATTTAT 203


                 ....*..
gi 30984464  531 EPPTPNP 537
Cdd:COG3469  204 TTGPPTP 210

PLN03209

translocon at the inner envelope of chloroplast subunit 62; Provisional

409-560

5.02e-03

translocon at the inner envelope of chloroplast subunit 62; Provisional

Pssm-ID: 178748 [Multi-domain] Cd Length: 576 Bit Score: 42.61 E-value: 5.02e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   409 RPPTPASrpptpGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSE--PPTPAGPTTASSEPPTPagr 486
Cdd:PLN03209  327 RVPPKES-----DAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDlkPPTSPIPTPPSSSPASS--- 398

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   487 PPTPAGRPPTPANPTASSEP------------PTPAGRPPTPAGR-----PPTPANPTASSEPPTPNPEGAPAPSSNEQP 549
Cdd:PLN03209  399 KSVDAVAKPAEPDVVPSPGSasnvpevepaqvEAKKTRPLSPYARyedlkPPTSPSPTAPTGVSPSVSSTSSVPAVPDTA 478

                         170
                  ....*....|.
gi 30984464   550 PAAASTDEATQ 560
Cdd:PLN03209  479 PATAATDAAAP 489

TALPID3

pfam15324

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for ...

455-557

5.30e-03

Hedgehog signalling target; TALPID3 is a family of eukaryotic proteins that are targets for Hedgehog signalling. Mutations in this gene noticed first in chickens lead to multiple abnormalities of development.

Pssm-ID: 434634 [Multi-domain] Cd Length: 1288 Bit Score: 42.57 E-value: 5.30e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    455 PTPAgPTTASSEPPTPAGPTTASSEPPTPAGRP-PTPAGRPPTPANPTASSEPPTPAGRP-PTPAGRPPTPANPTASSEP 532
Cdd:pfam15324  985 PTPV-PTPQPTPPCSPPSPLKEPSPVKTPDSSPcVSEHDFFPVKEIPPEKGADTGPAVSLvITPTVTPIATPPPAATPTP 1063

                           90       100
                   ....*....|....*....|....*
gi 30984464    533 PTPNPEGAPAPSSNEQPPAAASTDE 557
Cdd:pfam15324 1064 PLSENSIDKLKSPSPELPKPWEDSD 1088

Smc

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ...

1653-2012

5.39e-03

Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];

Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.62 E-value: 5.39e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1653 EHVAFVARRDLGEAKDALVRAKQQRAEAT---DRVTAALREALAAHERQARSEAESLANLKTllrvaaiPAAAAKTLEQA 1729
Cdd:COG1196  226 EAELLLLKLRELEAELEELEAELEELEAEleeLEAELAELEAELEELRLELEELELELEEAQ-------AEEYELLAELA 298

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1730 RSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHARRVFEAHPLTAARdgspdpLARLHARLDALGETRRRTAALRRSLEA 1809
Cdd:COG1196  299 RLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEE------LEEAEEELEEAEAELAEAEEALLEAEA 372

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1810 AEAEWDEVWARfgrarggawkspealgAAREQLRALQTAtntvlglvadahyprlpAKYQGAIGAKSAERAGAVEELGVA 1889
Cdd:COG1196  373 ELAEAEEELEE----------------LAEELLEALRAA-----------------AELAAQLEELEEAEEALLERLERL 419

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1890 VERHDGLLARLREDVVARVPWEMNADALGRLLAEFDALAEDLTPWAVDEFRGARALVQHRLGLYSAYAKARAQTGAGGTP 1969
Cdd:COG1196  420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEA 499

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 30984464 1970 PPAPAPLLVDVRALEARARSPG-ERHEPDPRTVRGRGEAYLRAR 2012
Cdd:COG1196  500 EADYEGFLEGVKAALLLAGLRGlAGAVAVLIGVEAAYEAALEAA 543

PspC_subgroup_2

pneumococcal surface protein PspC, LPXTG-anchored form; The pneumococcal surface protein PspC, ...

400-603

5.46e-03

Pssm-ID: 468202 [Multi-domain] Cd Length: 557 Bit Score: 42.45 E-value: 5.46e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   400 EQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPagptTASSE 479
Cdd:NF033839  359 EKPKPEVKPQPEKPKPEVKPQPETPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKPEVKPQPEKPKP----EVKPQ 434

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   480 PPTPAgrpPTPAGRPPTPaNPTASSEPPTPAgrpPTPAGRPPTPaNPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEAT 559
Cdd:NF033839  435 PEKPK---PEVKPQPEKP-KPEVKPQPETPK---PEVKPQPEKP-KPEVKPQPEKPKPDNSKPQADDKKPSTPNNLSKDK 506

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 30984464   560 QKALDALRDRQPPEPPCGSLtellgrhPDTdGGVSRLAAHEAGI 603
Cdd:NF033839  507 QPSNQASTNEKATNKPKKSL-------PST-GSISNLALEIAGL 542

PRK14948

DNA polymerase III subunit gamma/tau;

452-530

5.64e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 42.26 E-value: 5.64e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   452 SEPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASS 530
Cdd:PRK14948  361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEPSPTPPANAANAPPSL 439

PRK10672

endolytic peptidoglycan transglycosylase RlpA;

456-559

5.68e-03

endolytic peptidoglycan transglycosylase RlpA;

Pssm-ID: 236733 [Multi-domain] Cd Length: 361 Bit Score: 41.97 E-value: 5.68e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   456 TPAGPTTASSEPPTPAGPTTASSEPPTPagrPPTPAGRPPTpaNPTASSEPPTPAGRPPTPAGRPPTPANP--TASSEPP 533
Cdd:PRK10672  186 TVAKQSYALPARPDLSGGMGTPSVQPAP---APQGDVLPVS--NSTLKSEDPTGAPVTSSGFLGAPTTLAPgvLEGSEPT 260

                          90       100
                  ....*....|....*....|....*.
gi 30984464   534 TPNPEGAPAPSSNEQPPAAASTDEAT 559
Cdd:PRK10672  261 PTAPSSAPATAPAAAAPQAAATSSSA 286

PRK14965

DNA polymerase III subunits gamma and tau; Provisional

491-568

5.75e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 42.42 E-value: 5.75e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 30984464   491 AGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTA-SSEPPTPNPEGAPAPSsneqPPAAASTDEATQKALDALRD 568
Cdd:PRK14965  378 ERGAPAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARpAAARPAPAPAPPAAAA----PPARSADPAAAASAGDRWRA 452

COG4913

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

1661-1880

5.87e-03

Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];

Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 5.87e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1661 RDLGEAKDALVRAKQQRaeatdrvtAALREALAAHER--QARSEAESLANLKTLLRVaaipaaaaktLEQARSVAEIVDQ 1738
Cdd:COG4913  235 DDLERAHEALEDAREQI--------ELLEPIRELAERyaAARERLAELEYLRAALRL----------WFAQRRLELLEAE 296

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1739 IELLLEQTEKA-AELDQAAVDWLEHARRVFEAHpltAARDGSP-DPLARLHARLDALGEtrrrtaalrrSLEAAEAEWDE 1816
Cdd:COG4913  297 LEELRAELARLeAELERLEARLDALREELDELE---AQIRGNGgDRLEQLEREIERLER----------ELEERERRRAR 363

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464 1817 VWARFGRARGGAWKSPEALGAAREQLRALQTATNTVLGLVADAHYPRLPAKYQG--AIGAKSAERA 1880
Cdd:COG4913  364 LEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLrrELRELEAEIA 429

PHA03418

hypothetical E4 protein; Provisional

495-582

5.97e-03

hypothetical E4 protein; Provisional

Pssm-ID: 177646 [Multi-domain] Cd Length: 230 Bit Score: 41.26 E-value: 5.97e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   495 PTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPPEP 574
Cdd:PHA03418   37 PAPHHPNPQEDPDKNPSPPPDPPLTPRPPAQPNGHNKPPVTKQPGGEGTEEDHQAPLAADADDDPRPGKRSKADEHGPAP 116


                  ....*...
gi 30984464   575 PCGSLTEL 582
Cdd:PHA03418  117 GRAALAPF 124

PTZ00144

dihydrolipoamide succinyltransferase; Provisional

488-570

6.06e-03

dihydrolipoamide succinyltransferase; Provisional

Pssm-ID: 240289 [Multi-domain] Cd Length: 418 Bit Score: 41.98 E-value: 6.06e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   488 PTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAPSSneqPPAAASTDEATQKALDALR 567
Cdd:PTZ00144  120 TGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP---PPTPVARADPRETRVPMSR 196


                  ...
gi 30984464   568 DRQ 570
Cdd:PTZ00144  197 MRQ 199

PRK14965

DNA polymerase III subunits gamma and tau; Provisional

455-519

6.21e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 42.04 E-value: 6.21e-03

                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAgRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGR 519
Cdd:PRK14965  382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPA-APARPAAARPAPAPAPPAAAAPPARSADPAAAAS 445

PRK14948

DNA polymerase III subunit gamma/tau;

488-561

6.57e-03

DNA polymerase III subunit gamma/tau;

Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 42.26 E-value: 6.57e-03

                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464   488 PTPAGRPPTPANPTASSEPPTPAGRPPTPAgRPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQK 561
Cdd:PRK14948  518 SNTAKTPPPPQKSPPPPAPTPPLPQPTATA-PPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPTPSPTK 590

DUF5585

pfam17823

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

370-594

6.91e-03

Family of unknown function (DUF5585); This is a family of unknown function found in chordata.

Pssm-ID: 465521 [Multi-domain] Cd Length: 506 Bit Score: 41.87 E-value: 6.91e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    370 HHPKRASLPTRTRR-------SARHAATPFSRGSGGDEQTRPAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPP 442
Cdd:pfam17823   90 HTPHGTDLSEPATRegaadgaASRALAAAASSSPSSAAQSLPAAIAALPSEAFSAPRAAACRANASAAPRAAIAAASAPH 169

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    443 TPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSepPTPAGRPPTPAGRPPTPANPTASSEPP--TPAGRPPTPAGRP 520
Cdd:pfam17823  170 AASPAPRTAASSTTAASSTTAASSAPTTAASSAPAT--LTPARGISTAATATGHPAAGTALAAVGnsSPAAGTVTAAVGT 247

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    521 PTPAN-----------PTASSEPPTPNPEG---APA---PSSNEQPPAAASTDEATQKALDALRDRQP-----PEP-PCG 577
Cdd:pfam17823  248 VTPAAlatlaaaagtvASAAGTINMGDPHArrlSPAkhmPSDTMARNPAAPMGAQAQGPIIQVSTDQPvhntaGEPtPSP 327

                          250
                   ....*....|....*..
gi 30984464    578 SLTELLGRHPDTDGGVS 594
Cdd:pfam17823  328 SNTTLEPNTPKSVASTN 344

PRK07764

DNA polymerase III subunits gamma and tau; Validated

485-574

7.09e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 42.28 E-value: 7.09e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   485 GRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAgrpptPANPTASSEPPTPNPEGAPAPSsnEQPPAAASTDEATQKALD 564
Cdd:PRK07764  384 RLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAA-----PAAAAAPAPAAAPQPAPAPAPA--PAPPSPAGNAPAGGAPSP 456

                          90
                  ....*....|
gi 30984464   565 ALRDRQPPEP 574
Cdd:PRK07764  457 PPAAAPSAQP 466

PRK14965

DNA polymerase III subunits gamma and tau; Provisional

477-571

7.49e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 42.04 E-value: 7.49e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   477 SSEPPTPAGRPPTPagRPPTPANPTASSEPPTPAGRPptPAGRPPTPAnptassePPTPNPEGAPAPSSNEQppAAASTD 556
Cdd:PRK14965  381 APAPPSAAWGAPTP--AAPAAPPPAAAPPVPPAAPAR--PAAARPAPA-------PAPPAAAAPPARSADPA--AAASAG 447

                          90
                  ....*....|....*
gi 30984464   557 EATQKALDALRDRQP 571
Cdd:PRK14965  448 DRWRAFVAFVKGKKP 462

DUF3729

pfam12526

Protein of unknown function (DUF3729); This family of proteins is found in viruses. Proteins ...

470-543

7.60e-03

Pssm-ID: 372164 [Multi-domain] Cd Length: 115 Bit Score: 38.91 E-value: 7.60e-03

                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 30984464    470 PAGPTTASSEPPTPAGRPPTPAGRPPTPANPT----ASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPNPEGAPAP 543
Cdd:pfam12526   29 FSPPESAHPDPPPPVGDPRPPVVDTPPPVSAVwvlpPPSEPAAPEPDLVPPVTGPAGPPSPLAPPAPAQKPPLPPPRP 106

PHA03369

capsid maturational protease; Provisional

452-550

7.79e-03

capsid maturational protease; Provisional

Pssm-ID: 223061 [Multi-domain] Cd Length: 663 Bit Score: 41.91 E-value: 7.79e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   452 SEPPTPAGPTTASSEPPTPAGPTtassePPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSE 531
Cdd:PHA03369  357 SRVLAAAAKVAVIAAPQTHTGPA-----DRQRPQRPDGIPYSVPARSPMTAYPPVPQFCGDPGLVSPYNPQSPGTSYGPE 431

                          90
                  ....*....|....*....
gi 30984464   532 PPTPNPegaPAPSSNEQPP 550
Cdd:PHA03369  432 PVGPVP---PQPTNPYVMP 447

PRK08691

DNA polymerase III subunits gamma and tau; Validated

455-605

8.60e-03

DNA polymerase III subunits gamma and tau; Validated

Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 42.00 E-value: 8.60e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPTPANPTASSEPPT 534
Cdd:PRK08691  451 QTSAKSIQTASEAETPPENQVSKNKAADNETDAPLSEVPSENPIQATPNDEAVETETFAHEAPAEPFYGYGFPDNDCPPE 530

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 30984464   535 PNPEGAPAPSSNEQPPAAA---STDEATQKALDalRDRQPPEPPCGSLTE---LLGRHPDTDGGVSRLAAHEAGIAR 605
Cdd:PRK08691  531 DGAEIPPPDWEHAAPADTAgggADEEAEAGGIG--GNNTPSAPPPEFSTEnwaAIVRHFARKLGAAQMPAQHSAWTE 605

SPT5

COG5164

Transcription elongation factor SPT5 [Transcription];

456-561

8.80e-03

Transcription elongation factor SPT5 [Transcription];

Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 41.55 E-value: 8.80e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464  456 TPAGPTTASSePPTP-------------AGPTTASSEPP-----TPAGRPPTPAGRPPTPANPTASSEPPTPAGR----- 512
Cdd:COG5164  100 TPAGDGGATG-PPDDggatgppddggstTPPSGGSTTPPgdggsTPPGPGSTGPGGSTTPPGDGGSTTPPGPGGSttppd 178

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464  513 ------PPTPAG-RPPTPANPTASSEPPTPNPEGAPAPSSNEQPPAAASTDEATQK 561
Cdd:COG5164  179 dggsttPPNKGEtGTDIPTGGTPRQGPDGPVKKDDKNGKGNPPDDRGGKTGPKDQR 234

COG3903

Predicted ATPase [General function prediction only];

1365-1829

8.91e-03

Predicted ATPase [General function prediction only];

Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 41.93 E-value: 8.91e-03

                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1365 RALQELGKVVAATRRRADELEAAAADLAEKLADRDARAGRERWAADVEAALDR-VENRAEFDAVELRRLQALAAQNKYNP 1443
Cdd:COG3903  482 AEAGERAAARRRHADYYLALAERAAAELRGPDQLAWLARLDAEHDNLRAALRWaLAHGDAELALRLAAALAPFWFLRGLL 561

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1444 RDFRKRAEQALAANAKTATLALEAAFAfnpytpenqhhpalppLAAARRIDWGPAFGAAAETYAEMFRVDTEPLARLLRI 1523
Cdd:COG3903  562 REGRRWLERALAAAGEAAAALAAAAAL----------------AAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLL 625

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1524 TGGLLDLAQAGGGFIDYHEAVSRLAEDLNGVPSLRHYVPFFRRGHAEYLELCDRLDALRADVHRALGGVPLDLAAAAEQT 1603
Cdd:COG3903  626 LAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAA 705

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1604 VRLRGDPAAAAELVRTGVTLACPSEDALAACVGALERVDQAPVKDTAYAEHVAFVARRDLGEAKDALVRAKQQRAEATDR 1683
Cdd:COG3903  706 AAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAAAAA 785

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464 1684 VTAALREALAAHERQARSEAESLANLKTLLRVAAIPAAAAKTLEQARSVAEIVDQIELLLEQTEKAAELDQAAVDWLEHA 1763
Cdd:COG3903  786 LAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAA 865

                        410       420       430       440       450       460
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464 1764 RRVFEAHPLTAARDGSPDPLARLHARLDALGETRRRTAALRRSLEAAEAEWDEVWARFGRARGGAW 1829
Cdd:COG3903  866 AAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAAAAAAAAAAAA 931

KAR9

pfam08580

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal ...

452-572

9.55e-03

Yeast cortical protein KAR9; The KAR9 protein in Saccharomyces cerevisiae is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules. KAR9 localizes at the shmoo tip in mating cells and at the tip of the growing bud in anaphase.

Pssm-ID: 430088 [Multi-domain] Cd Length: 684 Bit Score: 41.74 E-value: 9.55e-03

                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464    452 SEPPTPAG-PTTASSEPPTPAGPTTASS------------EPPTPAGRPPTP-AGRPPTPANPTAS------SEPPTPAG 511
Cdd:pfam08580  514 SETPTPALrPPSRPQPPPPGNRPRWNAStntndldvghnfKPLTLTTPSPTPsRSSRSSSTLPPVSplsrdkSRSPAPTC 593

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 30984464    512 RPPTPAGRPPTPANPTAS----------SEPPTPN---PEGAPAPSSNEQPPAAASTDEATQKALDALRDRQPP 572
Cdd:pfam08580  594 RSVSRASRRRASRKPTRIgspnsrtsllDEPPYPKltlSKGLPRTPRNRQSYAGTSPSRSVSVSSGLGPQTRPG 667

PRK13855

type IV secretion system protein VirB10; Provisional

466-577

9.66e-03

type IV secretion system protein VirB10; Provisional

Pssm-ID: 172376 Cd Length: 376 Bit Score: 41.43 E-value: 9.66e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   466 EPPTPAGPTTASSEPPTPAgrpptPAGRPPTPAnptassepptpagrPPTPAGRPPTPANPTASSEPPTPNPEGAP--AP 543
Cdd:PRK13855   58 EPAPPSTMIATNTKPFHPA-----PIDVPPDPP--------------AAQEAVQPTAPPSAQSEPERNEPRPEETPifAY 118

                          90       100       110
                  ....*....|....*....|....*....|....
gi 30984464   544 SSNEQPPAAASTDEATQKALDAlrDRQPPEPPCG 577
Cdd:PRK13855  119 SSGDQGGSKRAGHGDTDRRQDD--NREDNSLPAG 150

PRK14951

DNA polymerase III subunits gamma and tau; Provisional

404-539

9.76e-03

DNA polymerase III subunits gamma and tau; Provisional

Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 41.62 E-value: 9.76e-03

                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 30984464   404 PAAGPRPPTPASRPPTPGAPPTPGAPPTPGAPPTPGAPPTPAGPTTASSEPPTPAGPTTASSEPPTPAGPTTASSEPPTP 483
Cdd:PRK14951  367 AAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVA 446

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 30984464   484 AGRPPTPAGRPPTPANPTASSEPPTPAGRPPTPAGRPPtpanptasSEPPTPNPEG 539
Cdd:PRK14951  447 LAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA--------AARLTPTEEG 494

Smc