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Conserved domains on  [gi|564332742|ref|XP_006231047|]
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tetratricopeptide repeat protein 9C isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Spy super family cl27809
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-148 7.71e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG3914:

Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 7.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   2 EKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrGLDPSLPspipnlgpqgpaltpeqenilhtiqtDCYNNLAAC 81
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRAL----ALNPDNA--------------------------EALFNLGNL 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564332742  82 LLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG3914  122 LLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL 186
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-148 7.71e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 7.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   2 EKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrGLDPSLPspipnlgpqgpaltpeqenilhtiqtDCYNNLAAC 81
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRAL----ALNPDNA--------------------------EALFNLGNL 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564332742  82 LLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG3914  122 LLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL 186
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 82-152 4.21e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 4.21e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564332742   82 LLQMEPVKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQ 152
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 90-152 6.52e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 6.52e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564332742  90 YERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPkDANVRRYLQLTQ 152
Cdd:cd24142   16 FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-DGGYEKYLYLGQ 77
TPR_19 pfam14559
Tetratricopeptide repeat;
89-146 1.21e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 1.21e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 564332742   89 KYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRR 146
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
 
Name Accession Description Interval E-value
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 2-148 7.71e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 53.84  E-value: 7.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   2 EKRLQEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrGLDPSLPspipnlgpqgpaltpeqenilhtiqtDCYNNLAAC 81
Cdd:COG3914   72 AALLLLAALLELAALLLQALGRYEEALALYRRAL----ALNPDNA--------------------------EALFNLGNL 121

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564332742  82 LLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG3914  122 LLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNL 186
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 82-152 4.21e-08

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 51.62  E-value: 4.21e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564332742   82 LLQMEPVKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQ 152
Cdd:TIGR02917 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQ 339
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
6-155 7.10e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 50.30  E-value: 7.10e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   6 QEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrGLDPSLPspipnlgpqgpaltpeqenilhtiqtDCYNNLAACLLQM 85
Cdd:COG4785   71 DLAQLYYERGVAYDSLGDYDLAIADFDQAL----ELDPDLA--------------------------EAYNNRGLAYLLL 120

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  86 EpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSEL 155
Cdd:COG4785  121 G--DYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYLAERKL 188
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 1-145 2.07e-07

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 47.31  E-value: 2.07e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   1 MEKRLQE----AQLYKEEGNQRYREGKYRDAVSRYHRALlQLRGLDPSLpspipnlgpqgpaltpeqenilhtiqtdcYN 76
Cdd:COG4235    6 LRQALAAnpndAEGWLLLGRAYLRLGRYDEALAAYEKAL-RLDPDNADA-----------------------------LL 55

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564332742  77 NLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVR 145
Cdd:COG4235   56 DLAEALLAAG--DTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
73-158 2.19e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 46.15  E-value: 2.19e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  73 DCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQ 152
Cdd:COG0457    9 EAYNNLGLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86


                 ....*.
gi 564332742 153 SELSSY 158
Cdd:COG0457   87 QALGRY 92
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
7-158 3.98e-06

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 45.38  E-value: 3.98e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   7 EAQLYKEEGNQRYREGKYRDAVSRYHRALLqlrgLDPSLPSPIPNLG--------PQGPALTPEQENILHTIQTDCYNNL 78
Cdd:COG0457    7 DAEAYNNLGLAYRRLGRYEEAIEDYEKALE----LDPDDAEALYNLGlaylrlgrYEEALADYEQALELDPDDAEALNNL 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  79 AACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSY 158
Cdd:COG0457   83 GLALQALG--RYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 90-152 6.52e-06

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 44.93  E-value: 6.52e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564332742  90 YERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPkDANVRRYLQLTQ 152
Cdd:cd24142   16 FELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDP-DGGYEKYLYLGQ 77
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 75-148 6.34e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 40.76  E-value: 6.34e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564332742  75 YNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG4235   20 WLLLGRAYLRLG--RYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL 91
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 71-148 1.02e-04

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 40.18  E-value: 1.02e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564332742  71 QTDCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG4783    3 CAEALYALAQALLLAG--DYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
73-140 1.92e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 38.61  E-value: 1.92e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564332742  73 DCYNNLAACLLQMEpvKYERVREYsQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPK 140
Cdd:COG3063   27 DALNNLGLLLLEQG--RYDEAIAL-EKALKLDPNNAEALLNLAELLLELGDYDEALAYLERALELDPS 91
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 89-148 1.99e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.48  E-value: 1.99e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  89 KYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG2956   57 EYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL 116
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 73-148 2.61e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 2.61e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564332742  73 DCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG2956  111 EALRLLAEIYEQEG--DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL 184
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 78-148 4.50e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.51  E-value: 4.50e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564332742  78 LAACLLQMEPVKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPkDANVRRYL 148
Cdd:COG3071  228 LVRLYGRLQGGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRP-SAEAYAEL 297
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 68-146 7.88e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.28  E-value: 7.88e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  68 HTIQTDCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAK---ALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANV 144
Cdd:COG1729   26 SPLAPDALYWLGEAYYALG--DYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103


                 ..
gi 564332742 145 RR 146
Cdd:COG1729  104 KE 105
TPR_19 pfam14559
Tetratricopeptide repeat;
89-146 1.21e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 35.64  E-value: 1.21e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 564332742   89 KYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRR 146
Cdd:pfam14559   3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 89-165 1.71e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 37.25  E-value: 1.71e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564332742  89 KYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQL 165
Cdd:COG5010   69 DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAAL 145
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 98-148 1.76e-03

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 36.52  E-value: 1.76e-03
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 564332742  98 QKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG4235    7 RQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL 57
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
73-167 2.21e-03

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 37.29  E-value: 2.21e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  73 DCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQ 152
Cdd:COG0457  111 EALYNLGLALLELG--RYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAAL 188

                         90
                 ....*....|....*
gi 564332742 153 SELSSYHRKEKQLYL 167
Cdd:COG0457  189 ALAAAEVLLALLLAL 203
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 89-148 2.32e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.12  E-value: 2.32e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564332742  89 KYERVREYSQKVLERQPEN---AKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYL 148
Cdd:COG1729    8 DYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDAL 70
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 6-165 2.44e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 36.32  E-value: 2.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   6 QEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrgldpslpspipnlgpqgpALTPEQENIlhtiqtdcYNNLAACLLQM 85
Cdd:COG4783    2 ACAEALYALAQALLLAGDYDEAEALLEKAL----------------------ELDPDNPEA--------FALLGEILLQL 51

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  86 EpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQLTQSELSSYHRKEKQL 165
Cdd:COG4783   52 G--DLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAAL 129
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 75-150 4.35e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 36.63  E-value: 4.35e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 564332742  75 YNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQL 150
Cdd:COG2956  181 LLLLAELYLEQG--DYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLALADL 254
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 71-165 7.07e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 35.86  E-value: 7.07e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742  71 QTDCYNNLAACLLQMEpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKDANVRRYLQL 150
Cdd:COG2956  143 NAHAYCELAELYLEQG--DYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAE 220

                         90
                 ....*....|....*
gi 564332742 151 TQSELSSYHRKEKQL 165
Cdd:COG2956  221 LYEKLGDPEEALELL 235
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 6-141 7.98e-03

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 34.78  E-value: 7.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564332742   6 QEAQLYKEEGNQRYREGKYRDAVSRYHRALlqlrgldpslpspipnlgpqgpALTPEQENIlhtiqtdcYNNLAACLLQM 85
Cdd:COG4783   36 DNPEAFALLGEILLQLGDLDEAIVLLHEAL----------------------ELDPDEPEA--------RLNLGLALLKA 85

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 564332742  86 EpvKYERVREYSQKVLERQPENAKALYRAGVAFFHLQDYDQARHYLLAAVNRQPKD 141
Cdd:COG4783   86 G--DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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