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Conserved domains on  [gi|564352294|ref|XP_006238695|]
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kinesin-like protein KIF2C isoform X2 [Rattus norvegicus]

Protein Classification

kinesin family protein( domain architecture ID 10102678)

kinesin family protein is a microtubule-dependent molecular motor that plays an important role in intracellular transport and in cell division and has ATPase-containing motor domain; such as KIF2, a plus end-directed microtubule-dependent motor expressed in neurons that has been associated with axonal transport, neuron development, and lysosomal translocation (splice variants)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
207-535 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


:

Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 599.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 286
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRsLNLEVYVTFFEIYNGKVFDLLNKKA 366
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 367 KLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR--AKGRLHGKFSLVDLAG 444
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 445 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 524
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 564352294 525 LNTLRYADRVK 535
Cdd:cd01367  318 LNTLRYADRVK 328
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
207-535 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 599.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 286
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRsLNLEVYVTFFEIYNGKVFDLLNKKA 366
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 367 KLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR--AKGRLHGKFSLVDLAG 444
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 445 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 524
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 564352294 525 LNTLRYADRVK 535
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
213-536 1.26e-135

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 400.80  E-value: 1.26e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  213 RKRPLNKQELAKKEIDVISVPSkcllLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 292
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  293 CFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRSlNLEVYVTFFEIYNGKVFDLL----NKKAKL 368
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERS-EFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  369 RVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR--------LHGKFSLV 440
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  441 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISPGIS 519
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 564352294  520 SCEYTLNTLRYADRVKE 536
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
207-537 1.46e-118

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 357.27  E-value: 1.46e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   207 RICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 283
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   284 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRsLNLEVYVTFFEIYNGKVFDLLN 363
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREEG-WQFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   364 K-KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR-------LHG 435
Cdd:smart00129 147 PsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   436 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIAM 513
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 564352294   514 ISPGISSCEYTLNTLRYADRVKEL 537
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
247-604 5.81e-60

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.14  E-value: 5.81e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 247 VDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMA 326
Cdd:COG5059   48 VSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLS 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 327 SRDVFlLKNQPRYRSLNLEVYVTFFEIYNGKVFDLL-NKKAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACR 405
Cdd:COG5059  121 LKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 406 TSGQTFANSNSSRSHACFQILLRAKGRLHG-----KFSLVDLAGNERGADTssADRQTRM-EGAEINKSLLALKECIRAL 479
Cdd:COG5059  200 TTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVDLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINAL 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 480 GQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEM- 556
Cdd:COG5059  278 GDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIk 356
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564352294 557 -DASSHGASLTG-NEEEELSSQMSSFNE--AMTQIRELEERAMEELREIIQQ 604
Cdd:COG5059  357 fDLSEDRSEIEIlVFREQSQLSQSSLSGifAYMQSLKKETETLKSRIDLIMK 408
PLN03188 PLN03188
kinesin-12 family protein; Provisional
210-535 1.33e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 144.69  E-value: 1.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  210 VCVRKRPLNKQELAKKEIDVISVPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 289
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  290 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVF------LLKNQPRY--RSLNLEVYVTFFEIYNGKVFDL 361
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFerlfarINEEQIKHadRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  362 LNKKAK-LRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RAKGRLHG--- 435
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  436 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 506
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 564352294  507 RTCMIAMISPGISSCEYTLNTLRYADRVK 535
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
 
Name Accession Description Interval E-value
KISc_KIF2_like cd01367
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ...
207-535 0e+00

Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276818 [Multi-domain]  Cd Length: 328  Bit Score: 599.28  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 286
Cdd:cd01367    1 KIKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHEPKLKVDLTKYIENHTFRFDYVFDESSSNETVYRSTVKPLVPHIF 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDLSGksQNASKGIYAMASRDVFLLKNQPRYRsLNLEVYVTFFEIYNGKVFDLLNKKA 366
Cdd:cd01367   81 EGGKATCFAYGQTGSGKTYTMGGDFSG--QEESKGIYALAARDVFRLLNKLPYK-DNLGVTVSFFEIYGGKVFDLLNRKK 157
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 367 KLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLR--AKGRLHGKFSLVDLAG 444
Cdd:cd01367  158 RVRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQIILRdrGTNKLHGKLSFVDLAG 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 445 NERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGENSRTCMIAMISPGISSCEYT 524
Cdd:cd01367  238 SERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHIPFRGSKLTQVLKDSFIGENSKTCMIATISPGASSCEHT 317
                        330
                 ....*....|.
gi 564352294 525 LNTLRYADRVK 535
Cdd:cd01367  318 LNTLRYADRVK 328
Kinesin pfam00225
Kinesin motor domain;
213-536 1.26e-135

Kinesin motor domain;


Pssm-ID: 459720 [Multi-domain]  Cd Length: 326  Bit Score: 400.80  E-value: 1.26e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  213 RKRPLNKQELAKKEIDVISVPSkcllLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKAT 292
Cdd:pfam00225   1 RVRPLNEREKERGSSVIVSVES----VDSETVESSHLTNKNRTKTFTFDKVFDPEATQEDVYEETAKPLVESVLEGYNVT 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  293 CFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRSlNLEVYVTFFEIYNGKVFDLL----NKKAKL 368
Cdd:pfam00225  77 IFAYGQTGSGKTYTMEGS------DEQPGIIPRALEDLFDRIQKTKERS-EFSVKVSYLEIYNEKIRDLLspsnKNKRKL 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  369 RVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR--------LHGKFSLV 440
Cdd:pfam00225 150 RIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRstggeesvKTGKLNLV 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  441 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISPGIS 519
Cdd:pfam00225 230 DLAGSERASKTGAAGGQRLKEAANINKSLSALGNVISALADKKSkHIPYRDSKLTRLLQDSLGG-NSKTLMIANISPSSS 308
                         330
                  ....*....|....*..
gi 564352294  520 SCEYTLNTLRYADRVKE 536
Cdd:pfam00225 309 NYEETLSTLRFASRAKN 325
KISc cd00106
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ...
207-535 3.23e-122

Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276812 [Multi-domain]  Cd Length: 326  Bit Score: 366.58  E-value: 3.23e-122
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQElAKKEIDVISVPSKCLLLVHEPKlkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 286
Cdd:cd00106    1 NVRVAVRVRPLNGRE-ARSAKSVISVDGGKSVVLDPPK-----NRVAPPKTFAFDAVFDSTSTQEEVYEGTAKPLVDSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDLSGksqnaSKGIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLN--K 364
Cdd:cd00106   75 EGYNGTIFAYGQTGSGKTYTMLGPDPE-----QRGIIPRALEDIFERIDKRKETKSSFSVSASYLEIYNEKIYDLLSpvP 149
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 365 KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRL-------HGKF 437
Cdd:cd00106  150 KKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREksgesvtSSKL 229
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 438 SLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSFIGeNSRTCMIAMISP 516
Cdd:cd00106  230 NLVDLAGSERAKKT-GAEGDRLKEGGNINKSLSALGKVISALADGQNkHIPYRDSKLTRLLQDSLGG-NSKTIMIACISP 307
                        330
                 ....*....|....*....
gi 564352294 517 GISSCEYTLNTLRYADRVK 535
Cdd:cd00106  308 SSENFEETLSTLRFASRAK 326
KISc smart00129
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ...
207-537 1.46e-118

Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.


Pssm-ID: 214526 [Multi-domain]  Cd Length: 335  Bit Score: 357.27  E-value: 1.46e-118
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   207 RICVCVRKRPLNKQELAKKEIDVISVPSKC---LLLVHEPKLKVDLTkylenqaFCFDFAFDETASNEVVYRFTARPLVQ 283
Cdd:smart00129   1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVgktLTVRSPKNRQGEKK-------FTFDKVFDATASQEDVFEETAAPLVD 73
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   284 TIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRsLNLEVYVTFFEIYNGKVFDLLN 363
Cdd:smart00129  74 SVLEGYNATIFAYGQTGSGKTYTMIGT------PDSPGIIPRALKDLFEKIDKREEG-WQFSVKVSYLEIYNEKIRDLLN 146
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   364 K-KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR-------LHG 435
Cdd:smart00129 147 PsSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKnsssgsgKAS 226
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294   436 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN--KAHTPFRESKLTQVLRDSFiGENSRTCMIAM 513
Cdd:smart00129 227 KLNLVDLAGSERAKKT-GAEGDRLKEAGNINKSLSALGNVINALAQHskSRHIPYRDSKLTRLLQDSL-GGNSKTLMIAN 304
                          330       340
                   ....*....|....*....|....
gi 564352294   514 ISPGISSCEYTLNTLRYADRVKEL 537
Cdd:smart00129 305 VSPSSSNLEETLSTLRFASRAKEI 328
KISc_KIP3_like cd01370
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ...
207-537 1.27e-88

Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276821 [Multi-domain]  Cd Length: 345  Bit Score: 280.38  E-value: 1.27e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKcLLLVHEPKLKVDLTKYLEN------------QAFCFDFAFDETASNEVVY 274
Cdd:cd01370    1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDN-HMLVFDPKDEEDGFFHGGSnnrdrrkrrnkeLKYVFDRVFDETSTQEEVY 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 275 RFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGksqnasKGIYAMASRDVF----LLKNQPRYrslnlEVYVTF 350
Cdd:cd01370   80 EETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQE------PGLMVLTMKELFkrieSLKDEKEF-----EVSMSY 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 351 FEIYNGKVFDLLNKKAK-LRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRA 429
Cdd:cd01370  149 LEIYNETIRDLLNPSSGpLELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQ 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 430 KGRLH--------GKFSLVDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNK---AHTPFRESKLTQVL 497
Cdd:cd01370  229 QDKTAsinqqvrqGKLSLIDLAGSERASATN--NRGQRLkEGANINRSLLALGNCINALADPGkknKHIPYRDSKLTRLL 306
                        330       340       350       360
                 ....*....|....*....|....*....|....*....|
gi 564352294 498 RDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 537
Cdd:cd01370  307 KDS-LGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
KISc_KIF4 cd01372
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ...
210-533 2.01e-78

Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276823 [Multi-domain]  Cd Length: 341  Bit Score: 253.41  E-value: 2.01e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 210 VCVRKRPLNKQELAKKEIDVISVPSKclllvhEPKLKVDltkylENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 289
Cdd:cd01372    5 VAVRVRPLLPKEIIEGCRICVSFVPG------EPQVTVG-----TDKSFTFDYVFDPSTEQEEVYNTCVAPLVDGLFEGY 73
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 290 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRyRSLNLEVYVTFFEIYNGKVFDLLN----KK 365
Cdd:cd01372   74 NATVLAYGQTGSGKTYTMGTAYTAEEDEEQVGIIPRAIQHIFKKIEKKK-DTFEFQLKVSFLEIYNEEIRDLLDpetdKK 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 366 AKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR------------- 432
Cdd:cd01372  153 PTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKKngpiapmsaddkn 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 433 --LHGKFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALG---QNKAHTPFRESKLTQVLRDSfIGENSR 507
Cdd:cd01372  233 stFTSKFHFVDLAGSERLKRTGATGDRLK-EGISINSGLLALGNVISALGdesKKGAHVPYRDSKLTRLLQDS-LGGNSH 310
                        330       340
                 ....*....|....*....|....*.
gi 564352294 508 TCMIAMISPGISSCEYTLNTLRYADR 533
Cdd:cd01372  311 TLMIACVSPADSNFEETLNTLKYANR 336
KISc_KIF1A_KIF1B cd01365
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ...
207-535 9.38e-78

Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.


Pssm-ID: 276816 [Multi-domain]  Cd Length: 361  Bit Score: 252.66  E-value: 9.38e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKL-KVDLTKYLENQAFCFDFAF------DET-ASNEVVYRFTA 278
Cdd:cd01365    2 NVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQAdKNNKATREVPKSFSFDYSYwshdseDPNyASQEQVYEDLG 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 279 RPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKV 358
Cdd:cd01365   82 EELLQHAFEGYNVCLFAYGQTGSGKSYTMMGT------QEQPGIIPRLCEDLFSRIADTTNQNMSYSVEVSYMEIYNEKV 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 359 FDLLNKKAK-----LRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAK--- 430
Cdd:cd01365  156 RDLLNPKPKknkgnLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKrhd 235
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 431 ---GRLHGKFS---LVDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHT--------PFRESKLTQV 496
Cdd:cd01365  236 aetNLTTEKVSkisLVDLAGSER-ASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGKskkkssfiPYRDSVLTWL 314
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 564352294 497 LRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 535
Cdd:cd01365  315 LKEN-LGGNSKTAMIAAISPADINYEETLSTLRYADRAK 352
KISc_CENP_E cd01374
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ...
208-537 4.28e-77

Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276825 [Multi-domain]  Cd Length: 321  Bit Score: 249.17  E-value: 4.28e-77
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 208 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 287
Cdd:cd01374    2 ITVTVRVRPLNSREIGINEQVAWEIDNDTIYLVEPP-----------STSFTFDHVFGGDSTNREVYELIAKPVVKSALE 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 288 GGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFllknQPRYRSLNLE--VYVTFFEIYNGKVFDLLN-K 364
Cdd:cd01374   71 GYNGTIFAYGQTSSGKTFTMSGD------EDEPGIIPLAIRDIF----SKIQDTPDREflLRVSYLEIYNEKINDLLSpT 140
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 365 KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RAKGRLHGK------ 436
Cdd:cd01374  141 SQNLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITIesSERGELEEGtvrvst 220
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 437 FSLVDLAGNERGADT-SSADRqtRMEGAEINKSLLALKECIRAL--GQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIAM 513
Cdd:cd01374  221 LNLIDLAGSERAAQTgAAGVR--RKEGSHINKSLLTLGTVISKLseGKVGGHIPYRDSKLTRILQPSLGG-NSRTAIICT 297
                        330       340
                 ....*....|....*....|....
gi 564352294 514 ISPGISSCEYTLNTLRYADRVKEL 537
Cdd:cd01374  298 ITPAESHVEETLNTLKFASRAKKI 321
KISc_C_terminal cd01366
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ...
208-535 1.43e-71

Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276817 [Multi-domain]  Cd Length: 329  Bit Score: 235.18  E-value: 1.43e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 208 ICVCVRKRPLNKQELAKkEIDVISVPSkclllvhEPKLKVDLT-KYLENQAFCFDFAFDETASNEVVYRfTARPLVQTIF 286
Cdd:cd01366    4 IRVFCRVRPLLPSEENE-DTSHITFPD-------EDGQTIELTsIGAKQKEFSFDKVFDPEASQEDVFE-EVSPLVQSAL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFDLLNKKA 366
Cdd:cd01366   75 DGYNVCIFAYGQTGSGKTYTMEGPPE------SPGIIPRALQELFNTIKELKEKGWSYTIKASMLEIYNETIRDLLAPGN 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 367 ----KLRVLEDS-KQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKG-----RLHGK 436
Cdd:cd01366  149 apqkKLEIRHDSeKGDTTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHISGRNlqtgeISVGK 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 437 FSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSFIGeNSRTCMIAMISP 516
Cdd:cd01366  229 LNLVDLAGSERLNKSGATGDRLK-ETQAINKSLSALGDVISALRQKQSHIPYRNSKLTYLLQDSLGG-NSKTLMFVNISP 306
                        330
                 ....*....|....*....
gi 564352294 517 GISSCEYTLNTLRYADRVK 535
Cdd:cd01366  307 AESNLNETLNSLRFASKVN 325
KISc_KIF3 cd01371
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ...
210-535 9.89e-71

Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276822 [Multi-domain]  Cd Length: 334  Bit Score: 233.12  E-value: 9.89e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 210 VCVRKRPLNKQELAKKEIDVISV-PSKCLLLVHEPKLKV-DLTKylenqAFCFDFAFDETASNEVVYRFTARPLVQTIFE 287
Cdd:cd01371    5 VVVRCRPLNGKEKAAGALQIVDVdEKRGQVSVRNPKATAnEPPK-----TFTFDAVFDPNSKQLDVYDETARPLVDSVLE 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 288 GGKATCFAYGQTGSGKTHTMGGDlsgKSQNASKGIYAMASRDVF--LLKNQPRYRSLnleVYVTFFEIYNGKVFDLLNK- 364
Cdd:cd01371   80 GYNGTIFAYGQTGTGKTYTMEGK---REDPELRGIIPNSFAHIFghIARSQNNQQFL---VRVSYLEIYNEEIRDLLGKd 153
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 365 -KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRA-----KGRLH---G 435
Cdd:cd01371  154 qTKRLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECsekgeDGENHirvG 233
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 436 KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQNKA-HTPFRESKLTQVLRDSfIGENSRTCMIAMI 514
Cdd:cd01371  234 KLNLVDLAGSERQSKT-GATGERLKEATKINLSLSALGNVISALVDGKStHIPYRDSKLTRLLQDS-LGGNSKTVMCANI 311
                        330       340
                 ....*....|....*....|.
gi 564352294 515 SPGISSCEYTLNTLRYADRVK 535
Cdd:cd01371  312 GPADYNYDETLSTLRYANRAK 332
KISc_KHC_KIF5 cd01369
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ...
208-535 1.35e-68

Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276820 [Multi-domain]  Cd Length: 325  Bit Score: 227.21  E-value: 1.35e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 208 ICVCVRKRPLNKQELAKKEIDVISVPskclllvhePKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFE 287
Cdd:cd01369    4 IKVVCRFRPLNELEVLQGSKSIVKFD---------PEDTVVIATSETGKTFSFDRVFDPNTTQEDVYNFAAKPIVDDVLN 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 288 GGKATCFAYGQTGSGKTHTMGGdlsGKSQNASKGIYAMASRDVFllkNQPRYRSLNLE--VYVTFFEIYNGKVFDLLN-K 364
Cdd:cd01369   75 GYNGTIFAYGQTSSGKTYTMEG---KLGDPESMGIIPRIVQDIF---ETIYSMDENLEfhVKVSYFEIYMEKIRDLLDvS 148
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 365 KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR-----LHGKFSL 439
Cdd:cd01369  149 KTNLSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQENVetekkKSGKLYL 228
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 440 VDLAGNERgADTSSADRQTRMEGAEINKSLLALKECIRALGQ-NKAHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGI 518
Cdd:cd01369  229 VDLAGSEK-VSKTGAEGAVLDEAKKINKSLSALGNVINALTDgKKTHIPYRDSKLTRILQDS-LGGNSRTTLIICCSPSS 306
                        330
                 ....*....|....*..
gi 564352294 519 SSCEYTLNTLRYADRVK 535
Cdd:cd01369  307 YNESETLSTLRFGQRAK 323
KISc_BimC_Eg5 cd01364
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ...
205-535 5.69e-67

Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276815 [Multi-domain]  Cd Length: 353  Bit Score: 223.74  E-value: 5.69e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 205 EHRICVCVRKRPLNKQELAKKEIDVISV--PSKCLLLVHEPKLKVDLTKylenqAFCFDFAFDETASNEVVYRFTARPLV 282
Cdd:cd01364    1 GKNIQVVVRCRPFNLRERKASSHSVVEVdpVRKEVSVRTGGLADKSSTK-----TYTFDMVFGPEAKQIDVYRSVVCPIL 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 283 QTIFEGGKATCFAYGQTGSGKTHTMGGDLS-----GKSQNASKGIYAMASRDVF--LLKNQPRYrslnlEVYVTFFEIYN 355
Cdd:cd01364   76 DEVLMGYNCTIFAYGQTGTGKTYTMEGDRSpneeyTWELDPLAGIIPRTLHQLFekLEDNGTEY-----SVKVSYLEIYN 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 356 GKVFDLL----NKKAKLRVLEDSKQQ--VQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI---- 425
Cdd:cd01364  151 EELFDLLspssDVSERLRMFDDPRNKrgVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVFSItihi 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 426 ---------LLRAkgrlhGKFSLVDLAGNErGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 496
Cdd:cd01364  231 kettidgeeLVKI-----GKLNLVDLAGSE-NIGRSGAVDKRAREAGNINQSLLTLGRVITALVERAPHVPYRESKLTRL 304
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 564352294 497 LRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 535
Cdd:cd01364  305 LQDS-LGGRTKTSIIATISPASVNLEETLSTLEYAHRAK 342
KIP1 COG5059
Kinesin-like protein [Cytoskeleton];
247-604 5.81e-60

Kinesin-like protein [Cytoskeleton];


Pssm-ID: 227392 [Multi-domain]  Cd Length: 568  Bit Score: 211.14  E-value: 5.81e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 247 VDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSgksqnaSKGIYAMA 326
Cdd:COG5059   48 VSLEKSKEGT-YAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEE------EPGIIPLS 120
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 327 SRDVFlLKNQPRYRSLNLEVYVTFFEIYNGKVFDLL-NKKAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACR 405
Cdd:COG5059  121 LKELF-SKLEDLSMTKDFAVSISYLEIYNEKIYDLLsPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNR 199
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 406 TSGQTFANSNSSRSHACFQILLRAKGRLHG-----KFSLVDLAGNERGADTssADRQTRM-EGAEINKSLLALKECIRAL 479
Cdd:COG5059  200 TTASTEINDESSRSHSIFQIELASKNKVSGtsetsKLSLVDLAGSERAART--GNRGTRLkEGASINKSLLTLGNVINAL 277
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 480 GQNK--AHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSPHSGPSGEQAVQMETEEM- 556
Cdd:COG5059  278 GDKKksGHIPYRESKLTRLLQDS-LGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIk 356
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 564352294 557 -DASSHGASLTG-NEEEELSSQMSSFNE--AMTQIRELEERAMEELREIIQQ 604
Cdd:COG5059  357 fDLSEDRSEIEIlVFREQSQLSQSSLSGifAYMQSLKKETETLKSRIDLIMK 408
KISc_KIF9_like cd01375
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ...
212-535 3.06e-56

Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276826 [Multi-domain]  Cd Length: 334  Bit Score: 194.34  E-value: 3.06e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 212 VRKRPLNKQELAKKEIDvisvPSKCLLLVHEPKlkvDLTK-YLENQAFCFDFAFD---ETASNEVVYRFTARPLVQTIFE 287
Cdd:cd01375    6 VRVRPTDDFAHEMIKYG----EDGKSISIHLKK---DLRRgVVNNQQEDWSFKFDgvlHNASQELVYETVAKDVVSSALA 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 288 GGKATCFAYGQTGSGKTHTMGGdlsGKSQNASKGIYAMASRDVF-LLKNQPryrSLNLEVYVTFFEIYNGKVFDLLNKK- 365
Cdd:cd01375   79 GYNGTIFAYGQTGAGKTFTMTG---GTENYKHRGIIPRALQQVFrMIEERP---TKAYTVHVSYLEIYNEQLYDLLSTLp 152
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 366 ------AKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGR------- 432
Cdd:cd01375  153 yvgpsvTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSRtlsseky 232
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 433 LHGKFSLVDLAGNERGADTSSADrQTRMEGAEINKSLLALKECIRALG-QNKAHTPFRESKLTQVLRDSfIGENSRTCMI 511
Cdd:cd01375  233 ITSKLNLVDLAGSERLSKTGVEG-QVLKEATYINKSLSFLEQAIIALSdKDRTHVPFRQSKLTHVLRDS-LGGNCNTVMV 310
                        330       340
                 ....*....|....*....|....
gi 564352294 512 AMISPGISSCEYTLNTLRYADRVK 535
Cdd:cd01375  311 ANIYGEAAQLEETLSTLRFASRVK 334
KISc_KIF23_like cd01368
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ...
210-531 3.33e-55

Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276819 [Multi-domain]  Cd Length: 345  Bit Score: 191.84  E-value: 3.33e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 210 VCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPK-----LKVDLTKYLENQaFCFDFAFDETASNEVVYRFTARPLVQT 284
Cdd:cd01368    5 VYLRVRPLSKDELESEDEGCIEVINSTTVVLHPPKgsaanKSERNGGQKETK-FSFSKVFGPNTTQKEFFQGTALPLVQD 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 285 IFEGGKATCFAYGQTGSGKTHTMGGdlsgksqnaskgiyamASRDVFLLknqPR-----YRSL-NLEVYVTFFEIYNGKV 358
Cdd:cd01368   84 LLHGKNGLLFTYGVTNSGKTYTMQG----------------SPGDGGIL---PRsldviFNSIgGYSVFVSYIEIYNEYI 144
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 359 FDLLN--------KKAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQI-LLRA 429
Cdd:cd01368  145 YDLLEpspssptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIkLVQA 224
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 430 KGRLHG------------KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQN-----KAHTPFRESK 492
Cdd:cd01368  225 PGDSDGdvdqdkdqitvsQLSLVDLAGSERTSRTQNTGERLK-EAGNINTSLMTLGTCIEVLRENqlqgtNKMVPFRDSK 303
                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 564352294 493 LTQVLRDSFIGEnSRTCMIAMISPGISSCEYTLNTLRYA 531
Cdd:cd01368  304 LTHLFQNYFDGE-GKASMIVNVNPCASDYDETLHVMKFS 341
KISc_KLP2_like cd01373
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ...
206-535 1.32e-52

Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276824 [Multi-domain]  Cd Length: 347  Bit Score: 185.02  E-value: 1.32e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 206 HRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVdltkylenqaFCFDFAFDETASNEVVYRFTARPLVQTI 285
Cdd:cd01373    1 DAVKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPPKT----------FTFDHVADSNTNQESVFQSVGKPIVESC 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 286 FEGGKATCFAYGQTGSGKTHTMGGDLSG--KSQNASKGIYAMASRDVFLLKNQPRYRS---LNLEVYVTFFEIYNGKVFD 360
Cdd:cd01373   71 LSGYNGTIFAYGQTGSGKTYTMWGPSESdnESPHGLRGVIPRIFEYLFSLIQREKEKAgegKSFLCKCSFLEIYNEQIYD 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 361 LLNK-KAKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRLHG---- 435
Cdd:cd01373  151 LLDPaSRNLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIESWEKKACfvni 230
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 436 ---KFSLVDLAGNERGADTsSADRQTRMEGAEINKSLLALKECIRALGQN----KAHTPFRESKLTQVLRDSfIGENSRT 508
Cdd:cd01373  231 rtsRLNLVDLAGSERQKDT-HAEGVRLKEAGNINKSLSCLGHVINALVDVahgkQRHVCYRDSKLTFLLRDS-LGGNAKT 308
                        330       340
                 ....*....|....*....|....*..
gi 564352294 509 CMIAMISPGISSCEYTLNTLRYADRVK 535
Cdd:cd01373  309 AIIANVHPSSKCFGETLSTLRFAQRAK 335
KISc_KID_like cd01376
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ...
207-535 1.36e-52

Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.


Pssm-ID: 276827 [Multi-domain]  Cd Length: 319  Bit Score: 183.86  E-value: 1.36e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 207 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPklkvdlTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIF 286
Cdd:cd01376    1 NVRVAVRVRPFVDGTAGASDPSCVSGIDSCSVELADP------RNHGETLKYQFDAFYGEESTQEDIYAREVQPIVPHLL 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 287 EGGKATCFAYGQTGSGKTHTMGGDlsgksqNASKGIYAMASRDVFLLKNQPRYRSlnlEVYVTFFEIYNGKVFDLLN-KK 365
Cdd:cd01376   75 EGQNATVFAYGSTGAGKTFTMLGS------PEQPGLMPLTVMDLLQMTRKEAWAL---SFTMSYLEIYQEKILDLLEpAS 145
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 366 AKLRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRAKGRL------HGKFSL 439
Cdd:cd01376  146 KELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLapfrqrTGKLNL 225
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 440 VDLAGNERGADTSsaDRQTRM-EGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDSfIGENSRTCMIAMISPGI 518
Cdd:cd01376  226 IDLAGSEDNRRTG--NEGIRLkESGAINSSLFVLSKVVNALNKNLPRIPYRDSKLTRLLQDS-LGGGSRCIMVANIAPER 302
                        330
                 ....*....|....*..
gi 564352294 519 SSCEYTLNTLRYADRVK 535
Cdd:cd01376  303 TFYQDTLSTLNFAARSR 319
PLN03188 PLN03188
kinesin-12 family protein; Provisional
210-535 1.33e-35

kinesin-12 family protein; Provisional


Pssm-ID: 215621 [Multi-domain]  Cd Length: 1320  Bit Score: 144.69  E-value: 1.33e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  210 VCVRKRPLNKQELAKKEIDVISVPSKCLLlvhepklkvdltkyleNQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGG 289
Cdd:PLN03188  102 VIVRMKPLNKGEEGEMIVQKMSNDSLTIN----------------GQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGF 165
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  290 KATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVF------LLKNQPRY--RSLNLEVYVTFFEIYNGKVFDL 361
Cdd:PLN03188  166 NSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFerlfarINEEQIKHadRQLKYQCRCSFLEIYNEQITDL 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  362 LNKKAK-LRVLEDSKQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILL--RAKGRLHG--- 435
Cdd:PLN03188  246 LDPSQKnLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVesRCKSVADGlss 325
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  436 ----KFSLVDLAGNERGADTSSADRQTRmEGAEINKSLLALKECIRALGQ-----NKAHTPFRESKLTQVLRDSfIGENS 506
Cdd:PLN03188  326 fktsRINLVDLAGSERQKLTGAAGDRLK-EAGNINRSLSQLGNLINILAEisqtgKQRHIPYRDSRLTFLLQES-LGGNA 403
                         330       340
                  ....*....|....*....|....*....
gi 564352294  507 RTCMIAMISPGISSCEYTLNTLRYADRVK 535
Cdd:PLN03188  404 KLAMVCAISPSQSCKSETFSTLRFAQRAK 432
Motor_domain cd01363
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ...
210-478 5.49e-10

Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.


Pssm-ID: 276814 [Multi-domain]  Cd Length: 170  Bit Score: 58.90  E-value: 5.49e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 210 VCVRKRPLNKQElakkeidvISVPSKCLLlvhepklkvdltkylenqafcFDFAFDETASNEVVYRfTARPLVQTIFEGG 289
Cdd:cd01363    1 VLVRVNPFKELP--------IYRDSKIIV---------------------FYRGFRRSESQPHVFA-IADPAYQSMLDGY 50
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 290 KATC-FAYGQTGSGKTHTMggdlsgksqnasKGIYamasrdvfllknqPRYrslnlevyvtffeiyngkVFDLLNKKAKL 368
Cdd:cd01363   51 NNQSiFAYGESGAGKTETM------------KGVI-------------PYL------------------ASVAFNGINKG 87
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294 369 RVLEDSKqqvqvvgLQEYLVTCADDVIKMINMGSACRTSgQTFANSNSSRSHACFQIllrakgrlhgkfsLVDLAGNERg 448
Cdd:cd01363   88 ETEGWVY-------LTEITVTLEDQILQANPILEAFGNA-KTTRNENSSRFGKFIEI-------------LLDIAGFEI- 145
                        250       260       270
                 ....*....|....*....|....*....|
gi 564352294 449 adtssadrqtrmegaeINKSLLALKECIRA 478
Cdd:cd01363  146 ----------------INESLNTLMNVLRA 159
Microtub_bd pfam16796
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ...
203-362 7.25e-08

Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.


Pssm-ID: 465274 [Multi-domain]  Cd Length: 144  Bit Score: 51.84  E-value: 7.25e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  203 IEEHR--ICVCVRKRPLNKQELAkkeidvISVPSKCLLLVHEPKlkvdltkylENQAFCFDFAFDETASNEVVYRFTaRP 280
Cdd:pfam16796  15 IQELKgnIRVFARVRPELLSEAQ------IDYPDETSSDGKIGS---------KNKSFSFDRVFPPESEQEDVFQEI-SQ 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564352294  281 LVQTIFEGGKATCFAYGQTGSGKThtmggdlSGKSQNASKGIYAMASRdvflLKNQPRYrslnlEVYVTFFEIYNGKVFD 360
Cdd:pfam16796  79 LVQSCLDGYNVCIFAYGQTGSGSN-------DGMIPRAREQIFRFISS----LKKGWKY-----TIELQFVEIYNESSQD 142

                  ..
gi 564352294  361 LL 362
Cdd:pfam16796 143 LL 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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