|
Name |
Accession |
Description |
Interval |
E-value |
| TBC |
smart00164 |
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and ... |
160-368 |
3.97e-82 |
|
Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs; Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Pssm-ID: 214540 [Multi-domain] Cd Length: 216 Bit Score: 263.01 E-value: 3.97e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 160 VRKGIPHHFRAIVWQLLCDAQTMP---VKDQYSELLKMTSPCEKL----IRRDIARTYPEHNFFKEKDSLGQEVLFNVMK 232
Cdd:smart00164 1 VRKGVPPSLRGVVWKLLLNAQPMDtsaDKDLYSRLLKETAPDDKSivhqIEKDLRRTFPEHSFFQDKEGPGQESLRRVLK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 233 AYSLVDREVGYCQGSAFIVGLLLLQMP-EEEAFCVFFKLMQDYRLReLFKPSMAELGLCMYQFECMIQEYLPELFVHFQS 311
Cdd:smart00164 81 AYALYNPEVGYCQGMNFLAAPLLLVMEdEEDAFWCLVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKD 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564382493 312 QSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELM 368
Cdd:smart00164 160 LGITPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216
|
|
| RabGAP-TBC |
pfam00566 |
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are ... |
200-368 |
2.44e-54 |
|
Rab-GTPase-TBC domain; Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases.
Pssm-ID: 459855 Cd Length: 178 Bit Score: 185.92 E-value: 2.44e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 200 KLIRRDIARTYPEHNFFKEKDslGQEVLFNVMKAYSLVDREVGYCQGSAFIVGLLLLQ-MPEEEAFCVFFKLMQDYRLRE 278
Cdd:pfam00566 10 EQIEKDVPRTFPHSFFFDNGP--GQNSLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVyLDEEDAFWCFVSLLENYLLRD 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 279 LFKPSMAELGLCMYQFECMIQEYLPELFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIV-FRVGL 357
Cdd:pfam00566 88 FYTPDFPGLKRDLYVFEELLKKKLPKLYKHLKELGLDPDLFASQWFLTLFAREFPLSTVLRIWDYFFLEGEKFVlFRVAL 167
|
170
....*....|.
gi 564382493 358 ALLQMNQAELM 368
Cdd:pfam00566 168 AILKRFREELL 178
|
|
| COG5210 |
COG5210 |
GTPase-activating protein [General function prediction only]; |
85-414 |
7.29e-44 |
|
GTPase-activating protein [General function prediction only];
Pssm-ID: 227535 [Multi-domain] Cd Length: 496 Bit Score: 166.52 E-value: 7.29e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 85 LLAKLEEQNRLIETDSKSLRSVNGS-------RRNSGSSLVSSSSASSNLSHLEEDSWILWGRIVN-EWDDVRKKKEKQV 156
Cdd:COG5210 126 LKDSLPTHLPEASSTEKDFSSFKGSsslnsnpELNKEINELSLKEEPQKLRYYELAADKLWISYLDpNPLSFLPVQLSKL 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 157 KELVRKGIPHHFRAIVWQLLcdAQTMPVKDQ----YSELLKM-------TSPCEKLIRRDIARTYPEHNFFKEKDSLGQE 225
Cdd:COG5210 206 RELIRKGIPNELRGDVWEFL--LGIGFDLDKnpglYERLLNLhreakipTQEIISQIEKDLSRTFPDNSLFQTEISIRAE 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 226 VLFNVMKAYSLVDREVGYCQGSAFIVGLLLLQMPEEE-AFCVFFKLMQDYRLRELFKPSMAELGLCMYQFECMIQEYLPE 304
Cdd:COG5210 284 NLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEqAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPE 363
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 305 LFVHFQSQSFHTSMYASSWFLTIFLTTFPLPIATRIFDIFMSEGLEIVFRVGLALLQMNQAELMQLDMEGMLQhfqkVIP 384
Cdd:COG5210 364 LYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLD----LLL 439
|
330 340 350
....*....|....*....|....*....|
gi 564382493 385 HQFDGGPEKLIQSayqvkYNSKKMKKLEKE 414
Cdd:COG5210 440 KQLFLHSGKEAWS-----SILKFRHGTDRD 464
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
406-732 |
3.90e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 70.35 E-value: 3.90e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 406 KKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQT 485
Cdd:COG1196 260 AELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL 339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 486 DAARAKLEQAESTIRELQHHRHwhkcsstynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFpdENNIA 565
Cdd:COG1196 340 EELEEELEEAEEELEEAEAELA--------------EAEEALLEAEAELAEAEEELEELAEELLEALRAAAEL--AAQLE 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 RLQEELIAVKLREAEAIMGLKELRQQVRDLEEhwqrhvartsgrwKDPPKRNAVSELQGELMSIRLREAETQAEMREMKQ 645
Cdd:COG1196 404 ELEEAEEALLERLERLEEELEELEEALAELEE-------------EEEEEEEALEEAAEEEAELEEEEEALLELLAELLE 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 646 RMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVmAVRLREADSIAAVAELQ 725
Cdd:COG1196 471 EAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGV-EAAYEAALEAALAAALQ 549
|
....*..
gi 564382493 726 QHIAELE 732
Cdd:COG1196 550 NIVVEDD 556
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
439-762 |
1.10e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 439 LKQRIETLEKEsASLADRLiqgqvtRAQEAEENYLikrELATIKQQTDAARAKLEQAESTIRELQHHRHwhkcsstyned 518
Cdd:TIGR02168 198 LERQLKSLERQ-AEKAERY------KELKAELREL---ELALLVLRLEELREELEELQEELKEAEEELE----------- 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 519 fVLQLEKELVQARLSEAESqcALKEMQDKVLDIEKKNNSFpdENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEH 598
Cdd:TIGR02168 257 -ELTAELQELEEKLEELRL--EVSELEEEIEELQKELYAL--ANEISRLEQQKQILRERLANLERQLEELEAQLEELESK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 599 WQRHVARTSgRWKDppkrnAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQ------------NQINS--NQLRRA 664
Cdd:TIGR02168 332 LDELAEELA-ELEE-----KLEELKEELESLEAELEELEAELEELESRLEELEEQletlrskvaqleLQIASlnNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 665 EQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMA-VRLREADSIAAVAELQQHIAELE--IQKEEGKLQ 741
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEeLQEELERLEEALEELREELEEAEqaLDAAERELA 485
|
330 340
....*....|....*....|.
gi 564382493 742 GQLNRSDSKQYIRELKDQIAE 762
Cdd:TIGR02168 486 QLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
428-763 |
1.70e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 1.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 428 EIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQTDAARAKLEQAESTIRELQHHRh 507
Cdd:TIGR02168 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL- 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 508 whkcsstynedfvLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKnnsfpdennIARLQEELIAVKLREAEAIMGLKE 587
Cdd:TIGR02168 757 -------------TELEAEIEELEERLEEAEEELAEAEAEIEELEAQ---------IEQLKEELKALREALDELRAELTL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 588 LRQQVRDLEEHWQRHVARTSGrwkdppKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQE 667
Cdd:TIGR02168 815 LNEEAANLRERLESLERRIAA------TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 668 VTSLQEKVCSLSLKNKGLLAQLSEAkrRQAEIECKNKEEVMAVRLREADsiAAVAELQQHIAELEIQKEEGKLQGQLNRS 747
Cdd:TIGR02168 889 LALLRSELEELSEELRELESKRSEL--RRELEELREKLAQLELRLEGLE--VRIDNLQERLSEEYSLTLEEAEALENKIE 964
|
330 340
....*....|....*....|
gi 564382493 748 DSKQYIRE----LKDQIAEL 763
Cdd:TIGR02168 965 DDEEEARRrlkrLENKIKEL 984
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
430-771 |
2.16e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 64.70 E-value: 2.16e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 430 KRLRTENRLLKQRIETLEKESASLADRL--IQGQVTRAQEA-----EENYLIKRELATIKQQTDAARAKLEQAESTIREL 502
Cdd:TIGR02169 670 RSEPAELQRLRERLEGLKRELSSLQSELrrIENRLDELSQElsdasRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSL 749
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 503 QHHRhwhkcssTYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLD--IEKKNNSFPDENNIARLQEEliavKLREAE 580
Cdd:TIGR02169 750 EQEI-------ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsrIPEIQAELSKLEEEVSRIEA----RLREIE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 581 AIMGLKEL-RQQVRDLEEHWQRHVARTSGRWKDppKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINSN 659
Cdd:TIGR02169 819 QKLNRLTLeKEYLEKEIQELQEQRIDLKEQIKS--IEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 660 QLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKE--EVMAVRLREADSIAAVAELQQHIAELE----- 732
Cdd:TIGR02169 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEdeEIPEEELSLEDVQAELQRVEEEIRALEpvnml 976
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 564382493 733 -IQKEEGKLQGQLNRSDSKQYIRELKDQIAELTHELRCLK 771
Cdd:TIGR02169 977 aIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKK 1016
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
409-724 |
2.64e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 2.64e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 409 KKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRE-----LATI 481
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIsrLEQQKQILRERLANLERQLEeleaqLEEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 482 KQQTDAARAKLEQAEstirelqhhrhwhkcsstyNEDFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKKNNSFPDE 561
Cdd:TIGR02168 329 ESKLDELAEELAELE-------------------EKLEELKEELESLEAELEELEAE--LEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 562 NNIARLQEELIAVKLREAEAimglkelrqQVRDLEEHWQRHVARTSGRWKDpPKRNAVSELQGELMSIRLREAETQAEMR 641
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEA---------RLERLEDRRERLQQEIEELLKK-LEEAELKELQAELEELEEELEELQEELE 457
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 642 EMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLslknkgllaqlsEAKRRQAEIECKNKEEVMAVRLREADSIAAV 721
Cdd:TIGR02168 458 RLEEALEELREELEEAEQALDAAERELAQLQARLDSL------------ERLQENLEGFSEGVKALLKNQSGLSGILGVL 525
|
...
gi 564382493 722 AEL 724
Cdd:TIGR02168 526 SEL 528
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
430-768 |
1.47e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 1.47e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 430 KRLR-TENRL---------LKQRIETLEKEsaslADRLIQGQVTRAQEAE-ENYLIKRELATIKQQTDAARAKLEQAEST 498
Cdd:COG1196 179 RKLEaTEENLerledilgeLERQLEPLERQ----AEKAERYRELKEELKElEAELLLLKLRELEAELEELEAELEELEAE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 499 IRELQHHRHwhkcsstynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKKnnsfpdennIARLQEELIAVKLRE 578
Cdd:COG1196 255 LEELEAELA--------------ELEAELEELRLELEELELELEEAQAEEYELLAE---------LARLEQDIARLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 579 AEAIMGLKELRQQVRDLEEHWQRHVARTSgrwkdppkrnavsELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINS 658
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELE-------------ELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 659 NQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIEcknkeevmavrlreadsIAAVAELQQHIAELEIQKEEG 738
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLE-----------------EELEELEEALAELEEEEEEEE 441
|
330 340 350
....*....|....*....|....*....|..
gi 564382493 739 KLQGQLNRSDSKQY--IRELKDQIAELTHELR 768
Cdd:COG1196 442 EALEEAAEEEAELEeeEEALLELLAELLEEAA 473
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
448-700 |
6.14e-08 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 56.56 E-value: 6.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 448 KESASLADRLIQGQVTRAQEAEENYLIKReLATIKQQTDAARAKLEQAEstiRELQHHRHWHKCSSTYNE-DFVLQ---- 522
Cdd:COG3206 148 ELAAAVANALAEAYLEQNLELRREEARKA-LEFLEEQLPELRKELEEAE---AALEEFRQKNGLVDLSEEaKLLLQqlse 223
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 523 LEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPDENNIARLQEELIAVKLREAEAIMGL-------KELRQQVRDL 595
Cdd:COG3206 224 LESQLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYtpnhpdvIALRAQIAAL 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 596 EEHWQRHVARtsgrwkdppkrnAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQNQinsnQLRRAEQEVTSLQEkv 675
Cdd:COG3206 304 RAQLQQEAQR------------ILASLEAELEALQAREASLQAQLAQLEARLAELPELEA----ELRRLEREVEVARE-- 365
|
250 260
....*....|....*....|....*
gi 564382493 676 cslslknkgLLAQLSeAKRRQAEIE 700
Cdd:COG3206 366 ---------LYESLL-QRLEEARLA 380
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
406-649 |
1.80e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.06 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 406 KKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQT 485
Cdd:TIGR02168 274 LEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEEL 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 486 DAARAKLEQAESTIRELqhHRHWHKCsstynEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPDENNia 565
Cdd:TIGR02168 354 ESLEAELEELEAELEEL--ESRLEEL-----EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE-- 424
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 rlQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSgrwkdpPKRNAVSELQGELMSIRLREAETQAEMrEMKQ 645
Cdd:TIGR02168 425 --ELLKKLEEAELKELQAELEELEEELEELQEELERLEEALE------ELREELEEAEQALDAAERELAQLQARL-DSLE 495
|
....
gi 564382493 646 RMME 649
Cdd:TIGR02168 496 RLQE 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
561-775 |
2.58e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 54.68 E-value: 2.58e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 561 ENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEhwQRHVARTSGRWKDPPKRNAVSELQGELMSIRLRE---AETQ 637
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEE--ELEQLRKELEELSRQISALRKDLARLEAEVEQLEeriAQLS 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 638 AEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIecknKEEVMAVRLREADS 717
Cdd:TIGR02168 754 KELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLL----NEEAANLRERLESL 829
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564382493 718 IAAVAELQQHIAELEIQKEEGKLQGQ---LNRSDSKQYIRELKDQIAELTHELRCLKGQRD 775
Cdd:TIGR02168 830 ERRIAATERRLEDLEEQIEELSEDIEslaAEIEELEELIEELESELEALLNERASLEEALA 890
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
400-763 |
3.91e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.89 E-value: 3.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 400 QVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA 479
Cdd:PRK02224 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERD 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 480 TIKQQTDAARAKLEQAESTIRELQHHRHWHKCSSTYNEdfvlqLEKELVQARLSEAESQCA-----LKEMQDKVLDIEKK 554
Cdd:PRK02224 423 ELREREAELEATLRTARERVEEAEALLEAGKCPECGQP-----VEGSPHVETIEEDRERVEeleaeLEDLEEEVEEVEER 497
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 555 NNSFPD----ENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSGrwkdppKRNAVSELQGELMSIR 630
Cdd:PRK02224 498 LERAEDlveaEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE------KREAAAEAEEEAEEAR 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 631 LREAETQAEMREMKQRmmeMETQNQINSNQLRRAE--QEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECK-NKEEV 707
Cdd:PRK02224 572 EEVAELNSKLAELKER---IESLERIRTLLAAIADaeDEIERLREKREALAELNDERRERLAEKRERKRELEAEfDEARI 648
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 564382493 708 MAVRLREADSIAAVAELQQHIAEL-----EIQKEEGKLQGQLNRsdskqyIRELKDQIAEL 763
Cdd:PRK02224 649 EEAREDKERAEEYLEQVEEKLDELreerdDLQAEIGAVENELEE------LEELRERREAL 703
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
392-763 |
3.95e-07 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 54.17 E-value: 3.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 392 EKLIQSAYQVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEEN 471
Cdd:COG1196 400 AQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAAL 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 472 YLIKRELATIKQQTD---AARAKLEQAESTIRELQHHRHWHKCSSTYNEdfVLQLEKELVQARLSEAESQCALKEMQD-- 546
Cdd:COG1196 480 AELLEELAEAAARLLlllEAEADYEGFLEGVKAALLLAGLRGLAGAVAV--LIGVEAAYEAALEAALAAALQNIVVEDde 557
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 547 ---KVLDIEKKNN----SFPDENNIARLqeELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSGRWKDPPKRNAV 619
Cdd:COG1196 558 vaaAAIEYLKAAKagraTFLPLDKIRAR--AALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 620 SELQGELmsiRLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEI 699
Cdd:COG1196 636 LRRAVTL---AGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEA 712
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 564382493 700 E---CKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDSKQYIRELKDQIAEL 763
Cdd:COG1196 713 EeerLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
563-774 |
8.00e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 53.00 E-value: 8.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 563 NIARLQEELIavKLREAEAIMglKELRQQVRDLE---EHWQRHVArtsgrwkdppKRNAVSELQGELMSIRLREAET--- 636
Cdd:COG4913 226 AADALVEHFD--DLERAHEAL--EDAREQIELLEpirELAERYAA----------ARERLAELEYLRAALRLWFAQRrle 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 637 --QAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEiECKNKEEVMAVRLRE 714
Cdd:COG4913 292 llEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGGDRLEQLEREIERLERELE-ERERRRARLEALLAA 370
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564382493 715 A-----DSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDSKQYIRELKDQIAELTHELRCLKGQR 774
Cdd:COG4913 371 LglplpASAEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLERRK 435
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
406-762 |
1.09e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 406 KKMKKLEKEYTTIKTKEMEEQGEIKRLRTEnrlLKQRIETLEKESASLADRliQGQVTRAQEAEENYLIKRELATIKQQT 485
Cdd:PTZ00121 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADE---AKKKAEEDKKKADELKKA--AAAKKKADEAKKKAEEKKKADEAKKKA 1440
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 486 DAARaKLEQAESTIRELQHHRHWHKCSSTYNEdfVLQLEKELVQARLSEaESQCALKEMQDKVLDIEKKNNSFPDENNIA 565
Cdd:PTZ00121 1441 EEAK-KADEAKKKAEEAKKAEEAKKKAEEAKK--ADEAKKKAEEAKKAD-EAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 RLQEELIAVKLREAEAIMGLKELR--QQVRDLEEHWQRHVARTSGRWKDPPKRNAVSELQGelMSIRLREAETQAEMREM 643
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEEAKKADEAKkaEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKN--MALRKAEEAKKAEEARI 1594
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 644 KQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMAVRlreADSIAAVAE 723
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIK---AAEEAKKAE 1671
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 564382493 724 LQQHIAElEIQKEE---GKLQGQLNR-SDSKQYIRELKDQIAE 762
Cdd:PTZ00121 1672 EDKKKAE-EAKKAEedeKKAAEALKKeAEEAKKAEELKKKEAE 1713
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
429-775 |
1.75e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.96 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 429 IKRLR--TENRLLKQRIETLEKESASLADRLiqgQVTRAQEAEenylIKRELATIKQQTDAARAKLEQAESTIRELQHHR 506
Cdd:PRK02224 178 VERVLsdQRGSLDQLKAQIEEKEEKDLHERL---NGLESELAE----LDEEIERYEEQREQARETRDEADEVLEEHEERR 250
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 507 hwhkcsstyNEDFVLQLEKELVQARLSEAESQC-----ALKEMQDKVLDIEKKNNSFPDENNIARLQEELIAVKLREAEA 581
Cdd:PRK02224 251 ---------EELETLEAEIEDLRETIAETEREReelaeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELED 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 582 imGLKELRQQVRDleehwqrhvartsgrwkdppKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINSNQL 661
Cdd:PRK02224 322 --RDEELRDRLEE--------------------CRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 662 RRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIEcknkEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQ 741
Cdd:PRK02224 380 EDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELR----EERDELREREAELEATLRTARERVEEAEALLEAGKCP 455
|
330 340 350
....*....|....*....|....*....|....*..
gi 564382493 742 --GQ-LNRSDSKQYIRELKDQIAELTHELRCLKGQRD 775
Cdd:PRK02224 456 ecGQpVEGSPHVETIEEDRERVEELEAELEDLEEEVE 492
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
409-726 |
1.75e-06 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 51.75 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 409 KKLE--KEYTTIKTKEMEEQGE-IKRLRTENRLLKQRIETLEkESASLADRLI-----QGQVTRAQEAEENYLIKRELAT 480
Cdd:pfam10174 401 KKIEnlQEQLRDKDKQLAGLKErVKSLQTDSSNTDTALTTLE-EALSEKERIIerlkeQREREDRERLEELESLKKENKD 479
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 481 IKQQTDAARAKLEQAESTIRELQHHRHWHKCSSTYNEDFVLQLEKELVQAR-------------LSEAESQCALKEMQDK 547
Cdd:pfam10174 480 LKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKeecsklenqlkkaHNAEEAVRTNPEINDR 559
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 548 VLDIEKKNNSFPDENNIARLQEELIAVKLREAEAIMGLKElrQQVRDLEEHWQRHVartsgrwKDPPKRNAVSELQGELM 627
Cdd:pfam10174 560 IRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKD--KKIAELESLTLRQM-------KEQNKKVANIKHGQQEM 630
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 628 siRLREAETQAEMREMKQRMMEMETQNQINS--NQLRRAEQEVTSLQEKVCS--LSLKNK-GLLAQLSEAKRRQAEIECK 702
Cdd:pfam10174 631 --KKKGAQLLEEARRREDNLADNSQQLQLEElmGALEKTRQELDATKARLSStqQSLAEKdGHLTNLRAERRKQLEEILE 708
|
330 340
....*....|....*....|....
gi 564382493 703 NKEEVMAVRLREADSIAAVAELQQ 726
Cdd:pfam10174 709 MKQEALLAAISEKDANIALLELSS 732
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
392-774 |
7.45e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.68 E-value: 7.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 392 EKLIQSAYQVKynsKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKesasLADRLIQGQVTRAQEAEEN 471
Cdd:PRK03918 182 EKFIKRTENIE---ELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE----LKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 472 YLIKRELATIKQQTDAARAKLEQAESTIRELQHHRHWHKCSSTYNEdFVLQLEKEL--VQARLSEAESQcaLKEMQDKVL 549
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSE-FYEEYLDELreIEKRLSRLEEE--INGIEERIK 331
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 550 DIEKKnnsfpdENNIARLQEELIAVKlREAEAIMGLKELRQQVRDLEEHWQRHVARTSGRWKDppkrnavsELQGELMSI 629
Cdd:PRK03918 332 ELEEK------EERLEELKKKLKELE-KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--------KLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 630 RLREAETQAEMREMKQRMMEMETQnqinSNQLRRAEQEVTSLQEK--VC----------------SLSLKN-----KGLL 686
Cdd:PRK03918 397 EKAKEEIEEEISKITARIGELKKE----IKELKKAIEELKKAKGKcpVCgrelteehrkelleeyTAELKRiekelKEIE 472
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 687 AQLSEAKRRQAEIECKNKEEVMAVRLRE-ADSIAAVAE---------LQQHIAELEIQKEE-GKLQGQLNR-SDSKQYIR 754
Cdd:PRK03918 473 EKERKLRKELRELEKVLKKESELIKLKElAEQLKELEEklkkynleeLEKKAEEYEKLKEKlIKLKGEIKSlKKELEKLE 552
|
410 420
....*....|....*....|
gi 564382493 755 ELKDQIAELTHELRCLKGQR 774
Cdd:PRK03918 553 ELKKKLAELEKKLDELEEEL 572
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
565-774 |
8.46e-06 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 49.79 E-value: 8.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 565 ARLQEEliavKLREAEAIMGLKELRQQVRDLEEHwqrhvartsgrwkdppkrnaVSELQGELMSIRLREAETQAEMREMK 644
Cdd:pfam01576 82 SRLEEE----EERSQQLQNEKKKMQQHIQDLEEQ--------------------LDEEEAARQKLQLEKVTTEAKIKKLE 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 645 QRMMEMETQNQINSNQLRRAEQEVTSL-------QEKVCSLS-LKNK--GLLAQLS-----EAKRRQAEIECKNKEEVMA 709
Cdd:pfam01576 138 EDILLLEDQNSKLSKERKLLEERISEFtsnlaeeEEKAKSLSkLKNKheAMISDLEerlkkEEKGRQELEKAKRKLEGES 217
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564382493 710 VRLREAdsiaaVAELQQHIAELEIQ--KEEGKLQGQLNRSDSKQ--------YIRELKDQIAELTHELRCLKGQR 774
Cdd:pfam01576 218 TDLQEQ-----IAELQAQIAELRAQlaKKEEELQAALARLEEETaqknnalkKIRELEAQISELQEDLESERAAR 287
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
439-775 |
1.66e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 48.50 E-value: 1.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 439 LKQRIETLEKESASLADRLIQgQVTRAQEAEENylIKRELATIKQQTDAARAKLEQAEstirelqhhrhwhkcsstyned 518
Cdd:PRK02224 312 VEARREELEDRDEELRDRLEE-CRVAAQAHNEE--AESLREDADDLEERAEELREEAA---------------------- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 519 fvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPD-----ENNIARLQEELIAVKLREAEAIMGLKELRQQVR 593
Cdd:PRK02224 367 ---ELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVdlgnaEDFLEELREERDELREREAELEATLRTARERVE 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 594 DLEEHWQRHVARTSGR-WKDPPKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMEtqnqinsnQLRRAEQEVTSLQ 672
Cdd:PRK02224 444 EAEALLEAGKCPECGQpVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE--------DLVEAEDRIERLE 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 673 EKVCSLSlknkGLLAQ---LSEAKRRQAEIECKNKEEVMAvRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDS 749
Cdd:PRK02224 516 ERREDLE----ELIAErreTIEEKRERAEELRERAAELEA-EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIES 590
|
330 340
....*....|....*....|....*.
gi 564382493 750 KQYIRELKDQIAELTHELRCLKGQRD 775
Cdd:PRK02224 591 LERIRTLLAAIADAEDEIERLREKRE 616
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
396-765 |
3.78e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.64 E-value: 3.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 396 QSAYQVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL--------IQGQVTRAQE 467
Cdd:PRK04863 276 RHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLnlvqtalrQQEKIERYQA 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 468 AEENYLIKRE-----LATIKQQTDAARAKLEQAESTIRELQhhrhwhKCSSTYNEDFVLQLEKEL-----VQArLSEAES 537
Cdd:PRK04863 356 DLEELEERLEeqnevVEEADEQQEENEARAEAAEEEVDELK------SQLADYQQALDVQQTRAIqyqqaVQA-LERAKQ 428
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 538 QCAL-------------------KEMQDKVLDIEKKNNSFPDenniARLQEELIAVKLREAEAIMGLKELRQQVRDLEEH 598
Cdd:PRK04863 429 LCGLpdltadnaedwleefqakeQEATEELLSLEQKLSVAQA----AHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRR 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 599 W--QRHVARTSgrwkdPPKRNAVSELQGelmsiRLREAETQAEM-REMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKV 675
Cdd:PRK04863 505 LreQRHLAEQL-----QQLRMRLSELEQ-----RLRQQQRAERLlAEFCKRLGKNLDDEDELEQLQEELEARLESLSESV 574
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 676 CSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMA----VRLRE------ADSiAAVAELQQHIAELEIQKeegklqgQLN 745
Cdd:PRK04863 575 SEARERRMALRQQLEQLQARIQRLAARAPAWLAAqdalARLREqsgeefEDS-QDVTEYMQQLLEREREL-------TVE 646
|
410 420
....*....|....*....|
gi 564382493 746 RSDSKQYIRELKDQIAELTH 765
Cdd:PRK04863 647 RDELAARKQALDEEIERLSQ 666
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
406-777 |
4.85e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 47.07 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 406 KKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKEsASLADRLIQGQVTRAQEAEENYLIKRELATIKQQT 485
Cdd:COG4717 81 KEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKL-LQLLPLYQELEALEAELAELPERLEELEERLEELR 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 486 DaARAKLEQAESTIRELQHH-RHWHKCSSTYNEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPDENNI 564
Cdd:COG4717 160 E-LEEELEELEAELAELQEElEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEA 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 565 ARLQEEL--IAVKLREAEAIMGLKELRQQVRDLEEHWQ---------RHVARTSGRWKDPPKRNAVSELQGELMSIRLRE 633
Cdd:COG4717 239 AALEERLkeARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlglLALLFLLLAREKASLGKEAEELQALPALEELEE 318
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 634 AETQaemREMKQRMMEMETQNQINSNQLRRAEQEVTSLQE--------KVCSLSLKNKGLLAQLS-------EAKRRQAE 698
Cdd:COG4717 319 EELE---ELLAALGLPPDLSPEELLELLDRIEELQELLREaeeleeelQLEELEQEIAALLAEAGvedeeelRAALEQAE 395
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564382493 699 IECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDSKqyIRELKDQIAELTHELRCLKGQRDFS 777
Cdd:COG4717 396 EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEE--LEELREELAELEAELEQLEEDGELA 472
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
474-740 |
5.22e-05 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 47.26 E-value: 5.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 474 IKRELATIKQQTDAARAKLEQAESTIRELQHHrhwhkcsstynEDFVLQLEKELVQARLSEAESQcaLKEMQDKVLDIEK 553
Cdd:PRK04863 849 LERALADHESQEQQQRSQLEQAKEGLSALNRL-----------LPRLNLLADETLADRVEEIREQ--LDEAEEAKRFVQQ 915
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 554 KNNSFPD-ENNIARLQ---EELIAVKLREAEAIMGLKELRQQVRDLEEHWQRhvaRTSGRWKDPPKR-NAVSELQgELMS 628
Cdd:PRK04863 916 HGNALAQlEPIVSVLQsdpEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQR---RAHFSYEDAAEMlAKNSDLN-EKLR 991
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 629 IRLREAEtqAEMREMKQRMmemeTQNQinsNQLRRAEQEVTSLQEkvcSLSLKNKgllaQLSEAKRR----------QAE 698
Cdd:PRK04863 992 QRLEQAE--QERTRAREQL----RQAQ---AQLAQYNQVLASLKS---SYDAKRQ----MLQELKQElqdlgvpadsGAE 1055
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 564382493 699 IECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKL 740
Cdd:PRK04863 1056 ERARARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKL 1097
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
399-594 |
6.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.60 E-value: 6.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 399 YQVKYNSKK--MKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKR 476
Cdd:TIGR02169 327 LEAEIDKLLaeIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 477 E---LATIKQQTDAARAKLEQAESTIRELQhhrhwhkcsstyNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEK 553
Cdd:TIGR02169 407 EldrLQEELQRLSEELADLNAAIAGIEAKI------------NE---LEEEKEDKALEIKKQEWK--LEQLAADLSKYEQ 469
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 564382493 554 KnnSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVRD 594
Cdd:TIGR02169 470 E--LYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVRG 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
424-646 |
7.60e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.45 E-value: 7.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 424 EEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEaeenylikrELATIKQQTDAARAKLEQAESTIRELQ 503
Cdd:COG4913 259 ELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRA---------ELARLEAELERLEARLDALREELDELE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 504 HHRHwhkcSSTYNEdfVLQLEKELVQARLSEAESqcalkemqdkvldiekknnsfpdENNIARLQEELIAVKLREAEAIM 583
Cdd:COG4913 330 AQIR----GNGGDR--LEQLEREIERLERELEER-----------------------ERRRARLEALLAALGLPLPASAE 380
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 564382493 584 GLKELRQQVRDLEEHWQRHVARTsgrwkdppkRNAVSELQGELMSIRLREAETQAEMREMKQR 646
Cdd:COG4913 381 EFAALRAEAAALLEALEEELEAL---------EEALAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
566-776 |
9.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.20 E-value: 9.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 RLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHvartsgRWKDPPKRNAVSELQGELMSIRLREAETQAEMREMKQ 645
Cdd:TIGR02168 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEEL------RLEVSELEEEIEELQKELYALANEISRLEQQKQILRE 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 646 RMMEMETQNQINSNQLRRAEQ-------EVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNK---EEVMAVRLREA 715
Cdd:TIGR02168 310 RLANLERQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEeleEQLETLRSKVA 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 564382493 716 DSIAAVAELQQHIAELEIQKEEGKL--------QGQLNRSDSKQYIRELKDQIAELTHELRCLKGQRDF 776
Cdd:TIGR02168 390 QLELQIASLNNEIERLEARLERLEDrrerlqqeIEELLKKLEEAELKELQAELEELEEELEELQEELER 458
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
522-737 |
1.03e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 1.03e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 522 QLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFpdENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQR 601
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAAL--ERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 602 HVARTSGRWKDPPKRNAVSELQGELMSIRLREAETQAE-MREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSL 680
Cdd:COG4942 102 QKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQyLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLA 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564382493 681 KNKGLLAQLSEAKRRQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEE 737
Cdd:COG4942 182 ELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
410-700 |
1.07e-04 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 46.21 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 410 KLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQ--EAEENYLIKR---ELATIKQQ 484
Cdd:PRK03918 388 KLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGREltEEHRKELLEEytaELKRIEKE 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 485 TDAARAKLEQAESTIRELQHHRHWHKCSSTYNE--DFVLQLEKELVQARLSEAESQCA-LKEMQDKVLDIEKKNNSFPDE 561
Cdd:PRK03918 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKElaEQLKELEEKLKKYNLEELEKKAEeYEKLKEKLIKLKGEIKSLKKE 547
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 562 -NNIARLQEELIAV--KLREAEAimGLKELRQQVRDLEEHWQRHVARTSGRWKDPPKR-----NAVSELQGELMSIRLRE 633
Cdd:PRK03918 548 lEKLEELKKKLAELekKLDELEE--ELAELLKELEELGFESVEELEERLKELEPFYNEylelkDAEKELEREEKELKKLE 625
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 634 AE---TQAEMREMKQRMMEMEtqNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIE 700
Cdd:PRK03918 626 EEldkAFEELAETEKRLEELR--KELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
399-762 |
1.11e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 1.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 399 YQVKYNSKKMKklEKEYTTIKTKEMEEQGEIKRlrtenRLLKQRIETLEKEsasladRLIQGQVTRAQEAEEnylikrel 478
Cdd:pfam17380 256 YTVRYNGQTMT--ENEFLNQLLHIVQHQKAVSE-----RQQQEKFEKMEQE------RLRQEKEEKAREVER-------- 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 479 atikqqtdaaRAKLEQAEsTIRELQHHRHwhkcSSTY--NEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNN 556
Cdd:pfam17380 315 ----------RRKLEEAE-KARQAEMDRQ----AAIYaeQERMAMERERELERIRQEERKRELERIRQEEIAMEISRMRE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 557 sfpdennIARLQEEliavKLREAEAIMGLKELRQQVRDLEEHWQRHVArtsgrwKDPPKRNAVSELQGELMSIRLREAET 636
Cdd:pfam17380 380 -------LERLQME----RQQKNERVRQELEAARKVKILEEERQRKIQ------QQKVEMEQIRAEQEEARQREVRRLEE 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 637 QAEmREMKQ-RMMEMETQNQI-----NSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAkRRQAEIECKNKEEVMAV 710
Cdd:pfam17380 443 ERA-REMERvRLEEQERQQQVerlrqQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEE-RKQAMIEEERKRKLLEK 520
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564382493 711 RLREADSiAAVAELQQHIAELE------------IQKEEGKLQGQLNRSDSKQYIRELKDQIAE 762
Cdd:pfam17380 521 EMEERQK-AIYEEERRREAEEErrkqqemeerrrIQEQMRKATEERSRLEAMEREREMMRQIVE 583
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
404-697 |
1.18e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 404 NSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESAsladrliQGQVTRAQEAEENYLIKRELATIKQ 483
Cdd:TIGR02169 278 NKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA-------KLEAEIDKLLAEIEELEREIEEERK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 484 QTDAARAKLEQAESTIRELQHhrhwhkcsstynedfvlQLEKELVQARLSEAEsqcaLKEMQDKVLDIEKKNNSFpdENN 563
Cdd:TIGR02169 351 RRDKLTEEYAELKEELEDLRA-----------------ELEEVDKEFAETRDE----LKDYREKLEKLKREINEL--KRE 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 564 IARLQEELIAVKLREAEAIMGLKELRQQVRDLEEhwqrhvartsgRWKDppKRNAVSELQGELMSIRLREAETQAEMREM 643
Cdd:TIGR02169 408 LDRLQEELQRLSEELADLNAAIAGIEAKINELEE-----------EKED--KALEIKKQEWKLEQLAADLSKYEQELYDL 474
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564382493 644 KQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLS----LKNK------GLLAQLSEAKRRQA 697
Cdd:TIGR02169 475 KEEYDRVEKELSKLQRELAEAEAQARASEERVRGGRaveeVLKAsiqgvhGTVAQLGSVGERYA 538
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
405-727 |
1.42e-04 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 45.58 E-value: 1.42e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 405 SKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKE----SASLADRLIQGQVTRAQEAEENYLIKRELAT 480
Cdd:pfam10174 446 SEKERIIERLKEQREREDRERLEELESLKKENKDLKEKVSALQPEltekESSLIDLKEHASSLASSGLKKDSKLKSLEIA 525
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 481 IKQQTDAArAKLEQAESTIRELQHhrhwhkcSSTYNEDFVLQ---LEKELVQARLSEAESQCALKEMQDKVLDIEKKNNS 557
Cdd:pfam10174 526 VEQKKEEC-SKLENQLKKAHNAEE-------AVRTNPEINDRirlLEQEVARYKEESGKAQAEVERLLGILREVENEKND 597
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 558 fpDENNIARLqEELIAVKLREAEAIMGLKELRQQV--RDLEEHWQRHVARTSGRwKDPPKRNAVSELQGELMSIRLREAE 635
Cdd:pfam10174 598 --KDKKIAEL-ESLTLRQMKEQNKKVANIKHGQQEmkKKGAQLLEEARRREDNL-ADNSQQLQLEELMGALEKTRQELDA 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 636 TQAEMREMKQRMMEMETqnQINSNQLRRAEQevtsLQEKvcsLSLKNKGLLAQLSEAKRRQAEIEC------KNKEEVMA 709
Cdd:pfam10174 674 TKARLSSTQQSLAEKDG--HLTNLRAERRKQ----LEEI---LEMKQEALLAAISEKDANIALLELssskkkKTQEEVMA 744
|
330
....*....|....*...
gi 564382493 710 VRlREADSIaaVAELQQH 727
Cdd:pfam10174 745 LK-REKDRL--VHQLKQQ 759
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
440-646 |
1.72e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 1.72e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 440 KQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRELATIKQQTDAARAKLEQAESTIRELQHHRhwHKCSSTYNE 517
Cdd:COG4913 609 RAKLAALEAELAELEEELaeAEERLEALEAELDALQERREALQRLAEYSWDEIDVASAEREIAELEAEL--ERLDASSDD 686
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 518 dfVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKKnnsfpdennIARLQEELIAVKLREAEAIMGLKELRQQvrDLEE 597
Cdd:COG4913 687 --LAALEEQLEELEAELEELEEELDELKGEIGRLEKE---------LEQAEEELDELQDRLEAAEDLARLELRA--LLEE 753
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 564382493 598 HWQRHVARTSGrwkdppkRNAVSELQGELMSI--RLREAETQAE--MREMKQR 646
Cdd:COG4913 754 RFAAALGDAVE-------RELRENLEERIDALraRLNRAEEELEraMRAFNRE 799
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
421-597 |
2.12e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 2.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 421 KEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQVTRAQEAEENylIKRELATIK-QQTDAARAKLEQAES 497
Cdd:COG4913 275 EYLRAALRLWFAQRRLELLEAELEELRAELARLEAELerLEARLDALREELDE--LEAQIRGNGgDRLEQLEREIERLER 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 498 TIRELQHHRhwhkcsstynedfvLQLEKELVQARLSEAESQCALKEMQDKVLDIekknnsfpdennIARLQEELIAVKLR 577
Cdd:COG4913 353 ELEERERRR--------------ARLEALLAALGLPLPASAEEFAALRAEAAAL------------LEALEEELEALEEA 406
|
170 180
....*....|....*....|
gi 564382493 578 EAEAIMGLKELRQQVRDLEE 597
Cdd:COG4913 407 LAEAEAALRDLRRELRELEA 426
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
564-764 |
2.31e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.91 E-value: 2.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 564 IARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSGRWKD---PPKRNAVSELQGELMSIRL--------- 631
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEidvASAEREIAELEAELERLDAssddlaale 691
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 632 -REAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIEckNKEEVMAV 710
Cdd:COG4913 692 eQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGD--AVERELRE 769
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 564382493 711 RLREadsiaavaelQQHIAELEIQKEEGKLQGQLNrsdskQYIRELKDQIAELT 764
Cdd:COG4913 770 NLEE----------RIDALRARLNRAEEELERAMR-----AFNREWPAETADLD 808
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
404-768 |
2.68e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 404 NSKKMKKLEKEYTTIKTKEMEeqgeikrLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELatikQ 483
Cdd:pfam15921 312 NSMYMRQLSDLESTVSQLRSE-------LREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQL----Q 380
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 484 QTDAARAKLEQAESTIRElQHHRHWHKcsSTYNEDFVLQLEKEL---------VQARLSEAESQCAlKEMQDKVLDIEKK 554
Cdd:pfam15921 381 KLLADLHKREKELSLEKE-QNKRLWDR--DTGNSITIDHLRRELddrnmevqrLEALLKAMKSECQ-GQMERQMAAIQGK 456
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 555 NNSFpdeNNIARLQEELIAVK--LREAeaimgLKELRQQVRDLEEHwQRHVARTSGRWKDppKRNAVSELQGELMSIRLR 632
Cdd:pfam15921 457 NESL---EKVSSLTAQLESTKemLRKV-----VEELTAKKMTLESS-ERTVSDLTASLQE--KERAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 633 EAETQAEMREMKQRMMEME-TQNQINSNQLRRAEQE--VTSLQEKVCSLS--LKNKGLLAQLSEAKRRQAEIECKNKE-E 706
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLRnVQTECEALKLQMAEKDkvIEILRQQIENMTqlVGQHGRTAGAMQVEKAQLEKEINDRRlE 605
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564382493 707 VMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGqlnrSDSKQYIRELKDQIAELTHELR 768
Cdd:pfam15921 606 LQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAG----SERLRAVKDIKQERDQLLNEVK 663
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
400-653 |
2.79e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 2.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 400 QVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL--IQGQVTRAQEAEENYLIKRE 477
Cdd:TIGR02168 797 ELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIesLAAEIEELEELIEELESELE 876
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 478 LAT-----IKQQTDAARAKLEQAESTIRELQHHRHwhkcsstynedfvlQLEKELVQARLSEAESQCALKEMqdkvldie 552
Cdd:TIGR02168 877 ALLnerasLEEALALLRSELEELSEELRELESKRS--------------ELRRELEELREKLAQLELRLEGL-------- 934
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 553 kknnsfpdENNIARLQEELIAVKLREAEAIMGLKELRQqvrDLEEHWQRHVARTsgrwkdppkRNAVSELqGE--LMSIr 630
Cdd:TIGR02168 935 --------EVRIDNLQERLSEEYSLTLEEAEALENKIE---DDEEEARRRLKRL---------ENKIKEL-GPvnLAAI- 992
|
250 260
....*....|....*....|...
gi 564382493 631 lreaetqAEMREMKQRMMEMETQ 653
Cdd:TIGR02168 993 -------EEYEELKERYDFLTAQ 1008
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
564-775 |
3.16e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 3.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 564 IARLQEELIAVKLREAEAIMGLKELRQQVRDLEEhwqrhvartsgrwkdppKRNAVSELQGelMSIRLREAETQAEMREM 643
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRR-----------------EREKAERYQA--LLKEKREYEGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 644 KqrmmEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRqaeIECKNKEEVMAVRLREADSIAAVAE 723
Cdd:TIGR02169 233 E----ALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK---IKDLGEEEQLRVKEKIGELEAEIAS 305
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 564382493 724 LQQHIAELEIQKEEgkLQGQLNRSDSKqyIRELKDQIAELTHELRCLKGQRD 775
Cdd:TIGR02169 306 LERSIAEKERELED--AEERLAKLEAE--IDKLLAEIEELEREIEEERKRRD 353
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
412-503 |
4.08e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 4.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 412 EKEYTTIKTKEMEEQ-----GEIKRLRTENRLLKQRIETLEKESASLADRLiqgqVTRAQEAEENYLIKRELATIKQQTD 486
Cdd:COG2433 400 EKEHEERELTEEEEEirrleEQVERLEAEVEELEAELEEKDERIERLEREL----SEARSEERREIRKDREISRLDREIE 475
|
90
....*....|....*..
gi 564382493 487 AARAKLEQAESTIRELQ 503
Cdd:COG2433 476 RLERELEEERERIEELK 492
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
407-762 |
4.81e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 4.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 407 KMKKLEKEYTTI------KTKEMEE-QGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELA 479
Cdd:TIGR04523 343 QISQLKKELTNSesenseKQRELEEkQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKE 422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 480 TIKQQTDAARAKLEQAESTIRELQhhrhwhkcsstyNEDFVLQLE-KELVQARLSEaesqcalkEMQDKVLDIEKKNNsf 558
Cdd:TIGR04523 423 LLEKEIERLKETIIKNNSEIKDLT------------NQDSVKELIiKNLDNTRESL--------ETQLKVLSRSINKI-- 480
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 559 pdENNIARLQEELiavKLREAEaimgLKELRQQVRDLEEhwqrhvartsgRWKDPPKRNAVSELQGELMSIRLREAETqa 638
Cdd:TIGR04523 481 --KQNLEQKQKEL---KSKEKE----LKKLNEEKKELEE-----------KVKDLTKKISSLKEKIEKLESEKKEKES-- 538
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 639 EMREMKQRMMEMETQNqiNSNQLrraEQEVTSLQEKVCSLSLKNKGLlaqlsEAKRRQAEIECKNKE-EVMAVRLREADS 717
Cdd:TIGR04523 539 KISDLEDELNKDDFEL--KKENL---EKEIDEKNKEIEELKQTQKSL-----KKKQEEKQELIDQKEkEKKDLIKEIEEK 608
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 564382493 718 IAAVAELQQHIAelEIQKEEGKLQGQLNRSDSK-----QYIRELKDQIAE 762
Cdd:TIGR04523 609 EKKISSLEKELE--KAKKENEKLSSIIKNIKSKknklkQEVKQIKETIKE 656
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
585-768 |
4.84e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 4.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 585 LKELRQQVRDLEEHWQRHVArtsgrwkdppKRNAVSELQGELMSIRLREAETQAEMREMKQrmmemETQNQINSNQLRRA 664
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAE----------LQEELEELEEELEELEAELEELREELEKLEK-----LLQLLPLYQELEAL 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 665 EQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEevmAVRLREADSIAAVAELQQHIAELE-IQKEEGKLQGQ 743
Cdd:COG4717 138 EAELAELPERLEELEERLEELRELEEELEELEAELAELQEE---LEELLEQLSLATEEELQDLAEELEeLQQRLAELEEE 214
|
170 180
....*....|....*....|....*
gi 564382493 744 LNRsdSKQYIRELKDQIAELTHELR 768
Cdd:COG4717 215 LEE--AQEELEELEEELEQLENELE 237
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
426-775 |
5.54e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 426 QGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQ---EAEENylIKRELATIKQQTDAARAKLEQAESTIREL 502
Cdd:COG4913 294 EAELEELRAELARLEAELERLEARLDALREELDELEAQIRGnggDRLEQ--LEREIERLERELEERERRRARLEALLAAL 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 503 QH------------HRHWHKCSSTYNEDFVlQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFPDE--NNIARLQ 568
Cdd:COG4913 372 GLplpasaeefaalRAEAAALLEALEEELE-ALEEALAEAEAALRDLRRELRELEAEIASLERRKSNIPARllALRDALA 450
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 569 E-------------ELIAVKLREAE---AIMGLkeLRQQVRDL---EEHWQ---RHVARTSGR----------------- 609
Cdd:COG4913 451 EalgldeaelpfvgELIEVRPEEERwrgAIERV--LGGFALTLlvpPEHYAaalRWVNRLHLRgrlvyervrtglpdper 528
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 610 -------------WKDPPKRNAVSELQGELMSI----------RLREAETQAEMREMKQRMMEMETQNQINSN------- 659
Cdd:COG4913 529 prldpdslagkldFKPHPFRAWLEAELGRRFDYvcvdspeelrRHPRAITRAGQVKGNGTRHEKDDRRRIRSRyvlgfdn 608
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 660 --QLRRAEQEVTSLQEKVcslslknKGLLAQLSEAKRRQAEIEckNKEEVMAVRLREADSIAAVAELQQHIAELEIQKEe 737
Cdd:COG4913 609 raKLAALEAELAELEEEL-------AEAEERLEALEAELDALQ--ERREALQRLAEYSWDEIDVASAEREIAELEAELE- 678
|
410 420 430
....*....|....*....|....*....|....*...
gi 564382493 738 gklqgQLNRSDSKqyIRELKDQIAELTHELRCLKGQRD 775
Cdd:COG4913 679 -----RLDASSDD--LAALEEQLEELEAELEELEEELD 709
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
392-766 |
5.77e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.98 E-value: 5.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 392 EKLIQSAYQVKYNSKKMKKLEKEYTtiKTKEMEEQGEIKRLRTEnrlLKQRIETLEK--------ESASLADRLIQG--Q 461
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKK--KADEAKKKAEEKKKADE---AKKKAEEAKKadeakkkaEEAKKAEEAKKKaeE 1468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 462 VTRAQEAEENYLIKRELATIKQQTDAARAKLEQAESTIRELQHHRHWHKCSSTYNEDFVLQLEKELVQARLSEAESQCAL 541
Cdd:PTZ00121 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKA 1548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 542 KEMQ--------DKVLDIEKKNNSFPDENNIARLQEELIAVKLREAEAIMGLKELR-----QQVRDLEEHwqrhvartsg 608
Cdd:PTZ00121 1549 DELKkaeelkkaEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEkkmkaEEAKKAEEA---------- 1618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 609 RWKDPPKRNAvSELQGELMSIRLREAETQAEMREMKQRmmemETQNQINSNQL-RRAEQEVTSLQEkvcslslknkglLA 687
Cdd:PTZ00121 1619 KIKAEELKKA-EEEKKKVEQLKKKEAEEKKKAEELKKA----EEENKIKAAEEaKKAEEDKKKAEE------------AK 1681
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 688 QLSEAKRRQAEIECKNKEE---VMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDSKQYIRE--LKDQIAE 762
Cdd:PTZ00121 1682 KAEEDEKKAAEALKKEAEEakkAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDeeEKKKIAH 1761
|
....
gi 564382493 763 LTHE 766
Cdd:PTZ00121 1762 LKKE 1765
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
522-759 |
5.96e-04 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 43.31 E-value: 5.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 522 QLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSfpdeNNIARLQEE--------LIAVKLREAEAIMGLKELRQQVR 593
Cdd:pfam08017 25 QSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQG----NVLERRQRDaenrsqgnVLERRQRDAENRSQGNVLERRQR 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 594 DLEEHWQRHVA---------RTSGRWKDPPKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINSNQLRRA 664
Cdd:pfam08017 101 DAENRSQGNVLerrqrdaenKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQR 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 665 EQEVTSlQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMAVRLREAD--SIAAVAELQQHIAE-------LEIQK 735
Cdd:pfam08017 181 DAENKS-QGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLERRQRDAEnrSQGNVLERRQRDAEnksqgnvLERRQ 259
|
250 260
....*....|....*....|....
gi 564382493 736 EEGKLQGQLNRSDSKQYIRELKDQ 759
Cdd:pfam08017 260 RDAENRSQGNVLERRQRDAENRSQ 283
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
566-743 |
7.15e-04 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 42.93 E-value: 7.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 RLQEELIAVKLREAEAIMGLKELRQQVRDLEEhwqrhvaRTSGRWKDPPKRNAVSELQGELMSIRLREAETQAEMREMKQ 645
Cdd:pfam08017 137 RSQGNVLERRQRDAENRSQGNVLERRQRDAEN-------RSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLER 209
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 646 RMMEMETQNQINSNQLRRAEQEVTSlQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMAVRLREADSIAAVAELQ 725
Cdd:pfam08017 210 RQRDAENRSQGNVLERRQRDAENRS-QGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLERRQRDAENRSQGNVLE 288
|
170
....*....|....*...
gi 564382493 726 QHIAELEIQKEEGKLQGQ 743
Cdd:pfam08017 289 RRQRDAENKSQVGQLIGK 306
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
421-780 |
7.73e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.42 E-value: 7.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 421 KEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKREL--ATIKQQTDAARAKLEQAEST 498
Cdd:pfam02463 177 KLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLneERIDLLQELLRDEQEEIESS 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 499 IRELQHHrhwhkcsstynedfvlQLEKELVQARLSEAESQCALKEMQDKVLDIEKKNnsfpdenniarLQEELIAVKLRE 578
Cdd:pfam02463 257 KQEIEKE----------------EEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEE-----------LKSELLKLERRK 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 579 AEAIMGLKELRQQVRDLEEHWQRhvartsgrwkdppKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMET-QNQIN 657
Cdd:pfam02463 310 VDDEEKLKESEKEKKKAEKELKK-------------EKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQlEEELL 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 658 SNQLRRAEQEVTSLQEKVCSLSLKNKG-----LLAQLSEAKRRQAEIECKNKEEVMAVRLREADSIAAVAELQQHIAELE 732
Cdd:pfam02463 377 AKKKLESERLSSAAKLKEEELELKSEEekeaqLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQ 456
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 564382493 733 IQKEEGKLQGQLNRSDSKQYIRELKDQIAELTHELRCLKGQRDFSSRP 780
Cdd:pfam02463 457 ELKLLKDELELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESK 504
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
404-775 |
8.58e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 8.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 404 NSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQvtraqeaEENYLIKRELATIKQ 483
Cdd:TIGR04523 122 LEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLE-------KEKLNIQKNIDKIKN 194
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 484 QtdaaRAKLEQAESTIREL-QHHR-------HWHKCSSTYNEDFV-LQLEKELVQARLSEAESQC---------ALKEMQ 545
Cdd:TIGR04523 195 K----LLKLELLLSNLKKKiQKNKslesqisELKKQNNQLKDNIEkKQQEINEKTTEISNTQTQLnqlkdeqnkIKKQLS 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 546 DKVLDIEKKNNSFPD-ENNIARLQEELIAVKLREAEAIMglKELRQQVRDleehwqrhvartsgrwkdppKRNAVSELQG 624
Cdd:TIGR04523 271 EKQKELEQNNKKIKElEKQLNQLKSEISDLNNQKEQDWN--KELKSELKN--------------------QEKKLEEIQN 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 625 ELMSIRLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNK 704
Cdd:TIGR04523 329 QISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQ 408
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564382493 705 eevmavrlreadsiaavaELQQHIAELEIQKEEGKLQGQL---NRSDSKQYIRELKDQIAELTHELRCLKGQRD 775
Cdd:TIGR04523 409 ------------------QKDEQIKKLQQEKELLEKEIERlkeTIIKNNSEIKDLTNQDSVKELIIKNLDNTRE 464
|
|
| Fibrinogen_BP |
pfam08017 |
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family ... |
566-763 |
1.06e-03 |
|
Fibrinogen binding protein; Proteins in this family bind to fibrinogen. Members of this family includes the fibrinogen receptor, FbsA, which mediates platelet aggregation.
Pssm-ID: 311808 [Multi-domain] Cd Length: 393 Bit Score: 42.54 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 566 RLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVA---------RTSGRWKDPPKRNAVSELQGELMSIRLREAET 636
Cdd:pfam08017 105 RSQGNVLERRQRDAENKSQGNVLERRQRDAENRSQGNVLerrqrdaenRSQGNVLERRQRDAENRSQGNVLERRQRDAEN 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 637 QAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSlQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMAVRLREAD 716
Cdd:pfam08017 185 KSQGNVLERRQRDAENRSQGNVLERRQRDAENRS-QGNVLERRQRDAENRSQGNVLERRQRDAENKSQGNVLERRQRDAE 263
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 564382493 717 SIAavaelQQHIAELEIQKEEGKLQGqlNRSDSKQYIRELKDQIAEL 763
Cdd:pfam08017 264 NRS-----QGNVLERRQRDAENRSQG--NVLERRQRDAENKSQVGQL 303
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
411-750 |
1.69e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.04 E-value: 1.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 411 LEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENYLIKRELATIKQQTD---- 486
Cdd:pfam05557 109 LKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAEQRIKELEFEIQSQEQdsei 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 487 --AARAKLEQAESTIRELQHHRHWHKCSSTYNED-FVLQLEKELVQARLSEAEsqcalkEMQDKVLDIEKKNNSFPDE-- 561
Cdd:pfam05557 189 vkNSKSELARIPELEKELERLREHNKHLNENIENkLLLKEEVEDLKRKLEREE------KYREEAATLELEKEKLEQElq 262
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 562 --------------------NNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVAR-TSGRWKDPPKRNAVS 620
Cdd:pfam05557 263 swvklaqdtglnlrspedlsRRIEQLQQREIVLKEENSSLTSSARQLEKARRELEQELAQYLKKiEDLNKKLKRHKALVR 342
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 621 ELQGELMSI----------------RLREAETQAE----MREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSL 680
Cdd:pfam05557 343 RLQRRVLLLtkerdgyrailesydkELTMSNYSPQllerIEEAEDMTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTLER 422
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 681 KNKGLLAQLSEAKRRQAeiecknKEEVMAVRLREADSIAAVAELQQHIAELEIQKEEGKLQGQLNRSDSK 750
Cdd:pfam05557 423 ELQALRQQESLADPSYS------KEEVDSLRRKLETLELERQRLREQKNELEMELERRCLQGDYDPKKTK 486
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
404-538 |
1.76e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.76e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 404 NSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL----IQGQVTRAQEAEENY------- 472
Cdd:COG4913 683 SSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeaaeDLARLELRALLEERFaaalgda 762
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 564382493 473 LIKRELATIKQQTDAARAKLEQAESTIREL--QHHRHWHKCSST------YNEDFVLQLEKeLVQARLSEAESQ 538
Cdd:COG4913 763 VERELRENLEERIDALRARLNRAEEELERAmrAFNREWPAETADldadleSLPEYLALLDR-LEEDGLPEYEER 835
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
391-626 |
1.87e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 41.67 E-value: 1.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 391 PEKLIQSAYQVKYNSKKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQRIETLEKESASLADRL----IQGQVTRAQ 466
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELaeleKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 467 EAEENYLIKRELATIKQQTDAARAKLEQAESTIRELQHHRHWHKCSSTYNEDFVLQLEKELVQARLSEAESQCALKEMQD 546
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 547 KVLDIEKKNNSFpdENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVARTSGRWKDPPKRNaVSELQGEL 626
Cdd:COG4942 179 LLAELEEERAAL--EALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAG-FAALKGKL 255
|
|
| DUF1129 |
pfam06570 |
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial ... |
516-554 |
3.12e-03 |
|
Protein of unknown function (DUF1129); This family consists of several hypothetical bacterial proteins of unknown function.
Pssm-ID: 429008 Cd Length: 200 Bit Score: 39.95 E-value: 3.12e-03
10 20 30
....*....|....*....|....*....|....*....
gi 564382493 516 NEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDIEKK 554
Cdd:pfam06570 6 NQDYIFRLTKQLIKDGKSDEEIKEILDEMLPEILEGQKK 44
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
428-605 |
3.34e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 3.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 428 EIKRLRTENRLLKQRIETLEKESASLADRLiqgqVTRAQEAEEnylIKRELATIKQQTDAARAKLEQAE------STIRE 501
Cdd:COG1579 18 ELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELED---LEKEIKRLELEIEEVEARIKKYEeqlgnvRNNKE 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 502 LQHhrhwhkcsstynedfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKKNNSFpdENNIARLQEELIAVKlREAEA 581
Cdd:COG1579 91 YEA----------------LQKEIESLKRRISDLEDE--ILELMERIEELEEELAEL--EAELAELEAELEEKK-AELDE 149
|
170 180
....*....|....*....|....
gi 564382493 582 ImgLKELRQQVRDLEEHWQRHVAR 605
Cdd:COG1579 150 E--LAELEAELEELEAEREELAAK 171
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
490-683 |
3.79e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 40.91 E-value: 3.79e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 490 AKLEQAESTIRELQHHRHwhkcssTYNEdfvLQLEKELVQARLSEAESQcaLKEMQDKVLDIEKKNNSFPDENNIARLQE 569
Cdd:COG4717 71 KELKELEEELKEAEEKEE------EYAE---LQEELEELEEELEELEAE--LEELREELEKLEKLLQLLPLYQELEALEA 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 570 ELIAVKLREAEAIMGLKELRQQVRDLEEhWQRHVARTsgrwkdppKRNAVSELQGELMSIRLREAETQAEMREMKQRMME 649
Cdd:COG4717 140 ELAELPERLEELEERLEELRELEEELEE-LEAELAEL--------QEELEELLEQLSLATEEELQDLAEELEELQQRLAE 210
|
170 180 190
....*....|....*....|....*....|....
gi 564382493 650 METQNQINSNQLRRAEQEVTSLQEKVCSLSLKNK 683
Cdd:COG4717 211 LEEELEEAQEELEELEEELEQLENELEAAALEER 244
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
561-770 |
4.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.52 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 561 ENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHvartsgrwkdppkRNAVSELQGELMSIRLREAETQAEM 640
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRAL-------------EQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 641 REMKQRMMEMETQNQINSNQlrraEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKNKEEVMAVRLREADSIA- 719
Cdd:COG4942 100 EAQKEELAELLRALYRLGRQ----PPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAe 175
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 564382493 720 ---AVAELQQHIAELEIQKEE-GKLQGQLNR--SDSKQYIRELKDQIAELTHELRCL 770
Cdd:COG4942 176 leaLLAELEEERAALEALKAErQKLLARLEKelAELAAELAELQQEAEELEALIARL 232
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
387-674 |
4.42e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 40.71 E-value: 4.42e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 387 FDGGPEKLIQSAYQvkynskKMKKLEKEYTTIKTKEMEEQGEIKRLRTENRLLKQ---RIETLEKESasLADRL--IQGQ 461
Cdd:PRK04863 831 FEADPEAELRQLNR------RRVELERALADHESQEQQQRSQLEQAKEGLSALNRllpRLNLLADET--LADRVeeIREQ 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 462 VTRAQEAEeNYL---------IKRELATIK---QQTDAARAKLEQAESTIRELQhhrhwhkcsstyNEDFVLqleKELVQ 529
Cdd:PRK04863 903 LDEAEEAK-RFVqqhgnalaqLEPIVSVLQsdpEQFEQLKQDYQQAQQTQRDAK------------QQAFAL---TEVVQ 966
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 530 AR--LSEAESQCALKEMQDkvldiekknnsfpdenniarLQEELIAvKLREAEAiMGLK---ELRQQVRDLEEHWQRHVA 604
Cdd:PRK04863 967 RRahFSYEDAAEMLAKNSD--------------------LNEKLRQ-RLEQAEQ-ERTRareQLRQAQAQLAQYNQVLAS 1024
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 605 RTSGRwkdPPKRNAVSELQGELMSI------------RLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQ 672
Cdd:PRK04863 1025 LKSSY---DAKRQMLQELKQELQDLgvpadsgaeeraRARRDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKKLRKLE 1101
|
..
gi 564382493 673 EK 674
Cdd:PRK04863 1102 RD 1103
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
392-768 |
4.47e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 4.47e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 392 EKLIQSAYQVKYNSKKMKKLEKEYTTIKTKEmeeQGEIKRLRTENRLLKQR-IETLEKESASLADRLIQGQVTRAQEAEE 470
Cdd:TIGR00606 447 EILEKKQEELKFVIKELQQLEGSSDRILELD---QELRKAERELSKAEKNSlTETLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 471 NYLIKRELATIKQQTDAARAKLEQAESTIRELQHHRH------------------WHKCSSTYN--EDFVLQLEKELVQA 530
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDeltsllgyfpnkkqledwLHSKSKEINqtRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 531 RLSEAESQCALKEMQDKVLDIEKK----NNSFPDENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQRHVART 606
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSSYEDKlfdvCGSQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVC 683
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 607 SGRWKDPPKRNAV-SELQGELMSIRLREAETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGL 685
Cdd:TIGR00606 684 QRVFQTEAELQEFiSDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRL 763
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 686 LAQLSEakrRQAEIECKNKEEVMAvrlreADSIAAVAELQQHIAEL-EIQKEEGKLQGQLNRSDSKQYIRELKDQIAELT 764
Cdd:TIGR00606 764 KNDIEE---QETLLGTIMPEEESA-----KVCLTDVTIMERFQMELkDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQ 835
|
....
gi 564382493 765 HELR 768
Cdd:TIGR00606 836 HELD 839
|
|
| Filament |
pfam00038 |
Intermediate filament protein; |
469-737 |
5.43e-03 |
|
Intermediate filament protein;
Pssm-ID: 459643 [Multi-domain] Cd Length: 313 Bit Score: 39.90 E-value: 5.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 469 EENYLIKRELATIKQQTDAARAKLEQA-ESTIRELqhhRHWHKCSSTYN--------------EDFVLQLEKELVQARLS 533
Cdd:pfam00038 25 QQNKLLETKISELRQKKGAEPSRLYSLyEKEIEDL---RRQLDTLTVERarlqleldnlrlaaEDFRQKYEDELNLRTSA 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 534 EAESQCALKEMQDKVL---DIEKKnnsfpdennIARLQEELIAVK-LREAEaimgLKELRQQVRDLeehwQRHVARTSGR 609
Cdd:pfam00038 102 ENDLVGLRKDLDEATLarvDLEAK---------IESLKEELAFLKkNHEEE----VRELQAQVSDT----QVNVEMDAAR 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 610 WKDPPKrnAVSEL--QGELMSIR-LREAETQaemreMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLL 686
Cdd:pfam00038 165 KLDLTS--ALAEIraQYEEIAAKnREEAEEW-----YQSKLEELQQAAARNGDALRSAKEEITELRRTIQSLEIELQSLK 237
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 564382493 687 AQLSEAKRRQAEIECKNKEEVMAVRlreaDSIAAV-AELQQHIAELEIQKEE 737
Cdd:pfam00038 238 KQKASLERQLAETEERYELQLADYQ----ELISELeAELQETRQEMARQLRE 285
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
522-779 |
5.69e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 5.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 522 QLEKELVQARLSEAESQCALKEMQDKVLDIEKKNNSFpdENNIARLQ---------EELIAVKLREAEAimGLKELRQQV 592
Cdd:pfam12128 217 RLNRQQVEHWIRDIQAIAGIMKIRPEFTKLQQEFNTL--ESAELRLShlhfgyksdETLIASRQEERQE--TSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 593 RDLEEHWQRHVARTSGRWKdpPKRNAVSELQGELMsiRLREAETQAEMREMKQRMMEMETQNQInSNQLRRAEQEVTSLQ 672
Cdd:pfam12128 293 RTLDDQWKEKRDELNGELS--AADAAVAKDRSELE--ALEDQHGAFLDADIETAAADQEQLPSW-QSELENLEERLKALT 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 673 EKVCSLSLKNKGLLAQLSEakRRQAEIEcKNKEEVMAVRlREADSIAAVAE--LQQHIAELEIQKEEGKLQGQLNRSDSK 750
Cdd:pfam12128 368 GKHQDVTAKYNRRRSKIKE--QNNRDIA-GIKDKLAKIR-EARDRQLAVAEddLQALESELREQLEAGKLEFNEEEYRLK 443
|
250 260
....*....|....*....|....*....
gi 564382493 751 QYIRELKDQIAELTHELRCLKGQRDFSSR 779
Cdd:pfam12128 444 SRLGELKLRLNQATATPELLLQLENFDER 472
|
|
| PRK04778 |
PRK04778 |
septation ring formation regulator EzrA; Provisional |
421-674 |
7.09e-03 |
|
septation ring formation regulator EzrA; Provisional
Pssm-ID: 179877 [Multi-domain] Cd Length: 569 Bit Score: 39.82 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 421 KEMEEQG----------EIKRLRTENRLLKQRIETLEKESASLADRLIQGQV-----TRAQEAEENYLIKRELATIKQQT 485
Cdd:PRK04778 240 RELVEEGyhldhldiekEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIdqlydILEREVKARKYVEKNSDTLPDFL 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 486 DAARaklEQAESTIRELQHHRHwhkcSSTYNED---FVLQLEKEL--VQARLSE-----AESQCALKEMQDKVLDIEKKN 555
Cdd:PRK04778 320 EHAK---EQNKELKEEIDRVKQ----SYTLNESeleSVRQLEKQLesLEKQYDEiteriAEQEIAYSELQEELEEILKQL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 556 NSFpdENNIARLQEELIAVKLREAEAIMGLKELRQQVRDLeehwQRHVARtsgrwkdppkrnavSELQG--ELMSIRLRE 633
Cdd:PRK04778 393 EEI--EKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEI----KRYLEK--------------SNLPGlpEDYLEMFFE 452
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 564382493 634 A--ETQAEMREMKQRMMEMETQNQinsnQLRRAEQEVTSLQEK 674
Cdd:PRK04778 453 VsdEIEALAEELEEKPINMEAVNR----LLEEATEDVETLEEE 491
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
616-773 |
7.39e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 40.00 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 616 RNAVSELQGELMSIRLREAETQAEMREMKQR--MMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAK 693
Cdd:COG3206 174 RKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGP 253
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 694 RRQAEIecKNKEEVMAVRLREADSIAAVAELQQH-------IAEL--EIQKEEGKLQGQLNR--SDSKQYIRELKDQIAE 762
Cdd:COG3206 254 DALPEL--LQSPVIQQLRAQLAELEAELAELSARytpnhpdVIALraQIAALRAQLQQEAQRilASLEAELEALQAREAS 331
|
170
....*....|.
gi 564382493 763 LTHELRCLKGQ 773
Cdd:COG3206 332 LQAQLAQLEAR 342
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
406-768 |
7.97e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.75 E-value: 7.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 406 KKMKKLEKEYTTIKTKEMEeqgeIKRLRTENRLLKQRIETLEKESASLADRLIQGQVTRAQEAEENY-LIKRELATIKQQ 484
Cdd:COG4717 146 ERLEELEERLEELRELEEE----LEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLaELEEELEEAQEE 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 485 TDAARAKLEQAESTIRELQHHRHWHKCSSTYN-----------------------------------EDFVLQLEKELVQ 529
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLiaaallallglggsllsliltiagvlflvlgllalLFLLLAREKASLG 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 530 ARLSEAESQCALKEMQDKVLDIEKKNNSFPDENNIARLQEELIAVKlreaeaimGLKELRQQVRDLEEHWQRHVARTSgr 609
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE--------ELQELLREAEELEEELQLEELEQE-- 371
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 610 wkdppKRNAVSELQGELMSIRLREAETQAEMREMKQRMMEMETQ--NQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLA 687
Cdd:COG4717 372 -----IAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQleELLGELEELLEALDEEELEEELEELEEELEELEE 446
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 688 QLSEAKRRQAEIEcknkeevmaVRLREADSIAAVAELQQHIAELEIQKEEgklqgQLNRSDSKQYIRELKDQIAELTHEL 767
Cdd:COG4717 447 ELEELREELAELE---------AELEQLEEDGELAELLQELEELKAELRE-----LAEEWAALKLALELLEEAREEYREE 512
|
.
gi 564382493 768 R 768
Cdd:COG4717 513 R 513
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
392-771 |
8.72e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 39.62 E-value: 8.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 392 EKLIQSAYQVKYNSKKMKKLEKEYTTIKTKemeeqgeikrlrtenrllkqrIETLEKEsasladrliqgqvtraQEAEEN 471
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSE---------------------ISDLNNQ----------------KEQDWN 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 472 YLIKRELATIKQQTDAARAKLEQAESTIRELqhhrhwhkcsstynEDFVLQLEKELVQARLSEAESQCALKEMQDKVLDI 551
Cdd:TIGR04523 310 KELKSELKNQEKKLEEIQNQISQNNKIISQL--------------NEQISQLKKELTNSESENSEKQRELEEKQNEIEKL 375
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 552 EKKNNSFPDE-----NNIARLQEELIAVKLREAEAIMGLKELRQQVRDLEEHWQR---HVARTSGRWKDPPKRNAVSELQ 623
Cdd:TIGR04523 376 KKENQSYKQEiknleSQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERlkeTIIKNNSEIKDLTNQDSVKELI 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 624 GELMSIRLREAETQAEmrEMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIECKN 703
Cdd:TIGR04523 456 IKNLDNTRESLETQLK--VLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEK 533
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 564382493 704 KeevmavrlreadsiaavaELQQHIAELEiqKEEGKLQGQLNRSDSKQYIRELKDQIAELTHELRCLK 771
Cdd:TIGR04523 534 K------------------EKESKISDLE--DELNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLK 581
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
635-773 |
8.81e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 40.04 E-value: 8.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 564382493 635 ETQAEMREMKQRMMEMETQNQINSNQLRRAEQEVTSLQEKVCSLSLKNKGLLAQLSEAKRRQAEIEcknkEEVMAVRLRE 714
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE----AEVEQLEERI 749
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 564382493 715 ADSIAAVAELQQHIAEL--EIQKEEGKLQGQL-NRSDSKQYIRELKDQIAELTHELRCLKGQ 773
Cdd:TIGR02168 750 AQLSKELTELEAEIEELeeRLEEAEEELAEAEaEIEELEAQIEQLKEELKALREALDELRAE 811
|
|
| |
