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Conserved domains on  [gi|564389036|ref|XP_006253152|]
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centrosomal protein of 44 kDa isoform X6 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CEP44 super family cl20885
Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the ...
 5-79 1.39e-37

Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the centrosome and spindle poles.


The actual alignment was detected with superfamily member pfam15007:

Pssm-ID: 464439  Cd Length: 126  Bit Score: 130.79  E-value: 1.39e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564389036    5 DLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIELIAKNDVRFTDTVYK 79
Cdd:pfam15007   1 DLRNNLRKLERELRSLKYPRDVDYTGLKKGDPSAFLPILHYALLSYSTPVAELLVDRGYELYGKNDLRFIEGVYK 75
 
Name Accession Description Interval E-value
CEP44 pfam15007
Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the ...
 5-79 1.39e-37

Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the centrosome and spindle poles.


Pssm-ID: 464439  Cd Length: 126  Bit Score: 130.79  E-value: 1.39e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564389036    5 DLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIELIAKNDVRFTDTVYK 79
Cdd:pfam15007   1 DLRNNLRKLERELRSLKYPRDVDYTGLKKGDPSAFLPILHYALLSYSTPVAELLVDRGYELYGKNDLRFIEGVYK 75
 
Name Accession Description Interval E-value
CEP44 pfam15007
Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the ...
 5-79 1.39e-37

Centrosomal spindle body, CEP44; CEP44 is a coiled coil domain found localized in the centrosome and spindle poles.


Pssm-ID: 464439  Cd Length: 126  Bit Score: 130.79  E-value: 1.39e-37
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 564389036    5 DLKRSLRKLEQVLRSLNYPNEVDYVGLMKGDTAASLPIISYSLTSYSPHVAELLMESNIELIAKNDVRFTDTVYK 79
Cdd:pfam15007   1 DLRNNLRKLERELRSLKYPRDVDYTGLKKGDPSAFLPILHYALLSYSTPVAELLVDRGYELYGKNDLRFIEGVYK 75
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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