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Conserved domains on  [gi|568910863|ref|XP_006496909|]
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protein-associating with the carboxyl-terminal domain of ezrin isoform X2 [Mus musculus]

Protein Classification

protein kinase family protein( domain architecture ID 229378)

protein kinase family protein may catalyze the transfer of the gamma-phosphoryl group from ATP to substrates such as serine/threonine and/or tyrosine residues on proteins, or may be a pseudokinase

CATH:  1.10.510.10
PubMed:  16244704

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PKc_like super family cl21453
Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the ...
9-209 2.40e-33

Protein Kinases, catalytic domain; The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases, and choline kinases. These proteins catalyze the transfer of the gamma-phosphoryl group from ATP to hydroxyl groups in specific substrates such as serine, threonine, or tyrosine residues of proteins.


The actual alignment was detected with superfamily member cd14011:

Pssm-ID: 473864 [Multi-domain]  Cd Length: 287  Bit Score: 129.75  E-value: 2.40e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   9 KSYTLRESPFTLPSGLAVYpailqDGKCASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011    1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863  76 DGIHLVTERVQ-PLEVALET---------------LSPAEVCAGIYDILLALIFLHDR---------------------- 117
Cdd:cd14011   76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDvklvhgnicpesvvinsngewk 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863 118 -------------------FLRNIQSVRDPASIPPEEMSPEFsGLPESHGHARDAYAFGALVDSLL----PIF---NEQV 171
Cdd:cd14011  156 lagfdfcisseqatdqfpyFREYDPNLPPLAQPNLNYLAPEY-ILSKTCDPASDMFSLGVLIYAIYnkgkPLFdcvNNLL 234
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568910863 172 SADVLS---------------SFLQILHSALLNPMPECRPALSTLLSHDFFRN 209
Cdd:cd14011  235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
 
Name Accession Description Interval E-value
PK_SCY1_like cd14011
Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein ...
9-209 2.40e-33

Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This subfamily is composed of the catalytically inactive kinases with similarity to yeast Scy1. It includes four mammalian proteins called SCY1-like protein 1 (SCYL1), SCYL2, SCYL3, as well as Testis-EXpressed protein 14 (TEX14). SCYL1 binds to and co-localizes with the membrane trafficking coatomer I (COPI) complex, and regulates COPI-mediated vesicle trafficking. Null mutations in the SCYL1 gene are responsible for the pathology in mdf (muscle-deficient) mice which display progressive motor neuropathy. SCYL2, also called coated vesicle-associated kinase of 104 kDa (CVAK104), is involved in the trafficking of clathrin-coated vesicles. It also binds the HIV-1 accessory protein Vpu and acts as a regulatory factor that promotes the dephosphorylation of Vpu, facilitating the restriction of HIV-1 release. SCYL3, also called ezrin-binding protein PACE-1, may be involved in regulating cell adhesion and migration. TEX14 is required for spermatogenesis and male fertility. It localizes to kinetochores (KT) during mitosis and is a target of the mitotic kinase PLK1. It regulates the maturation of the outer KT and the KT-microtubule attachment. The SCY1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270913 [Multi-domain]  Cd Length: 287  Bit Score: 129.75  E-value: 2.40e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   9 KSYTLRESPFTLPSGLAVYpailqDGKCASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011    1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863  76 DGIHLVTERVQ-PLEVALET---------------LSPAEVCAGIYDILLALIFLHDR---------------------- 117
Cdd:cd14011   76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDvklvhgnicpesvvinsngewk 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863 118 -------------------FLRNIQSVRDPASIPPEEMSPEFsGLPESHGHARDAYAFGALVDSLL----PIF---NEQV 171
Cdd:cd14011  156 lagfdfcisseqatdqfpyFREYDPNLPPLAQPNLNYLAPEY-ILSKTCDPASDMFSLGVLIYAIYnkgkPLFdcvNNLL 234
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568910863 172 SADVLS---------------SFLQILHSALLNPMPECRPALSTLLSHDFFRN 209
Cdd:cd14011  235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
54-117 1.92e-04

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 44.62  E-value: 1.92e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568910863  54 AKHLKTLRHPCLLRFLSCTVEADGIHLVTERV--QPLEVALET---LSPAEVCAGIYDILLALIFLHDR 117
Cdd:COG0515   58 ARALARLNHPNIVRVYDVGEEDGRPYLVMEYVegESLADLLRRrgpLPPAEALRILAQLAEALAAAHAA 126
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
43-207 3.79e-03

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 39.82  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863    43 KRENEDKVNKAAKH----LKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSPAEVCAGIYDILLALIF 113
Cdd:smart00220  33 KKKKIKKDRERILReikiLKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDlfdllKKRGRLSEDEARFYLRQILSALEY 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   114 LHD-----------------------------RFLRNIQSVRDPASiPPEEMSPE-FSGlpESHGHARDAYAFGALV--- 160
Cdd:smart00220 113 LHSkgivhrdlkpenilldedghvkladfglaRQLDPGEKLTTFVG-TPEYMAPEvLLG--KGYGKAVDIWSLGVILyel 189
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   161 -----------------------DSLLPIFNEQVSADVLsSFLqilhSALLNPMPECRPALSTLLSHDFF 207
Cdd:smart00220 190 ltgkppfpgddqllelfkkigkpKPPFPPPEWDISPEAK-DLI----RKLLVKDPEKRLTAEEALQHPFF 254
 
Name Accession Description Interval E-value
PK_SCY1_like cd14011
Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein ...
9-209 2.40e-33

Pseudokinase domain of Scy1-like proteins; The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This subfamily is composed of the catalytically inactive kinases with similarity to yeast Scy1. It includes four mammalian proteins called SCY1-like protein 1 (SCYL1), SCYL2, SCYL3, as well as Testis-EXpressed protein 14 (TEX14). SCYL1 binds to and co-localizes with the membrane trafficking coatomer I (COPI) complex, and regulates COPI-mediated vesicle trafficking. Null mutations in the SCYL1 gene are responsible for the pathology in mdf (muscle-deficient) mice which display progressive motor neuropathy. SCYL2, also called coated vesicle-associated kinase of 104 kDa (CVAK104), is involved in the trafficking of clathrin-coated vesicles. It also binds the HIV-1 accessory protein Vpu and acts as a regulatory factor that promotes the dephosphorylation of Vpu, facilitating the restriction of HIV-1 release. SCYL3, also called ezrin-binding protein PACE-1, may be involved in regulating cell adhesion and migration. TEX14 is required for spermatogenesis and male fertility. It localizes to kinetochores (KT) during mitosis and is a target of the mitotic kinase PLK1. It regulates the maturation of the outer KT and the KT-microtubule attachment. The SCY1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270913 [Multi-domain]  Cd Length: 287  Bit Score: 129.75  E-value: 2.40e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   9 KSYTLRESPFTLPSGLAVYpailqDGKCASVFVYKRENEDK------------VNKAAKHLKTLRHPCLLRFLSCTVEA- 75
Cdd:cd14011    1 VASAGPGLPWKIYNGSKKS-----TKQEVSVFVFEKKQLEEyskrdreqilelLKRGVKQLTRLRHPRILTVQHPLEESr 75
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863  76 DGIHLVTERVQ-PLEVALET---------------LSPAEVCAGIYDILLALIFLHDR---------------------- 117
Cdd:cd14011   76 ESLAFATEPVFaSLANVLGErdnmpspppelqdykLYDVEIKYGLLQISEALSFLHNDvklvhgnicpesvvinsngewk 155
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863 118 -------------------FLRNIQSVRDPASIPPEEMSPEFsGLPESHGHARDAYAFGALVDSLL----PIF---NEQV 171
Cdd:cd14011  156 lagfdfcisseqatdqfpyFREYDPNLPPLAQPNLNYLAPEY-ILSKTCDPASDMFSLGVLIYAIYnkgkPLFdcvNNLL 234
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|...
gi 568910863 172 SADVLS---------------SFLQILHSALLNPMPECRPALSTLLSHDFFRN 209
Cdd:cd14011  235 SYKKNSnqlrqlslsllekvpEELRDHVKTLLNVTPEVRPDAEQLSKIPFFDD 287
PKc cd00180
Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group ...
40-204 5.38e-05

Catalytic domain of Protein Kinases; PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. PKs make up a large family of serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and more than 500 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase.


Pssm-ID: 270622 [Multi-domain]  Cd Length: 215  Bit Score: 44.95  E-value: 5.38e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863  40 FVYKRENEDKVNKA---AKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQP------LEVALETLSPAEVCAGIYDILLA 110
Cdd:cd00180   25 VIPKEKLKKLLEELlreIEILKKLNHPNIVKLYDVFETENFLYLVMEYCEGgslkdlLKENKGPLSEEEALSILRQLLSA 104
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863 111 LIFLHDRF-------LRNI------------------------QSVRDPASIPPEEMSPEFSGLPEsHGHARDAYAFGAL 159
Cdd:cd00180  105 LEYLHSNGiihrdlkPENIlldsdgtvkladfglakdldsddsLLKTTGGTTPPYYAPPELLGGRY-YGPKVDIWSLGVI 183
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*
gi 568910863 160 vdsLLpifneqvsadVLSSFLQILHSaLLNPMPECRPALSTLLSH 204
Cdd:cd00180  184 ---LY----------ELEELKDLIRR-MLQYDPKKRPSAKELLEH 214
PKc_Myt1 cd14050
Catalytic domain of the Dual-specificity protein kinase, Myt1; Dual-specificity PKs catalyze ...
31-119 1.02e-04

Catalytic domain of the Dual-specificity protein kinase, Myt1; Dual-specificity PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine as well as tyrosine residues on protein substrates. Myt1 is a cytoplasmic cell cycle checkpoint kinase that can keep the cyclin-dependent kinase CDK1 in an inactive state through phosphorylation of N-terminal thr (T14) and tyr (Y15) residues, leading to the delay of meiosis I entry. Meiotic progression is ensured by a two-step inhibition and downregulation of Myt1 by CDK1/XRINGO and p90Rsk during oocyte maturation. In addition, Myt1 targets cyclin B1/B2 and is essential for Golgi and ER assembly during telophase. In Drosophila, Myt1 may be a downstream target of Notch during eye development. The Myt1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine PKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.


Pssm-ID: 270952 [Multi-domain]  Cd Length: 249  Bit Score: 44.61  E-value: 1.02e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863  31 LQDGKCASV------FVYKRENEDKVNKAAKHLKTLRHPCLLRFLSCTVEADGIHLVTERVQP-LEVALE---TLSPAEV 100
Cdd:cd14050   23 REDGKLYAVkrsrsrFRGEKDRKRKLEEVERHEKLGEHPNCVRFIKAWEEKGILYIQTELCDTsLQQYCEethSLPESEV 102
                         90
                 ....*....|....*....
gi 568910863 101 CAGIYDILLALIFLHDRFL 119
Cdd:cd14050  103 WNILLDLLKGLKHLHDHGL 121
SPS1 COG0515
Serine/threonine protein kinase [Signal transduction mechanisms];
54-117 1.92e-04

Serine/threonine protein kinase [Signal transduction mechanisms];


Pssm-ID: 440281 [Multi-domain]  Cd Length: 482  Bit Score: 44.62  E-value: 1.92e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568910863  54 AKHLKTLRHPCLLRFLSCTVEADGIHLVTERV--QPLEVALET---LSPAEVCAGIYDILLALIFLHDR 117
Cdd:COG0515   58 ARALARLNHPNIVRVYDVGEEDGRPYLVMEYVegESLADLLRRrgpLPPAEALRILAQLAEALAAAHAA 126
S_TKc smart00220
Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or ...
43-207 3.79e-03

Serine/Threonine protein kinases, catalytic domain; Phosphotransferases. Serine or threonine-specific kinase subfamily.


Pssm-ID: 214567 [Multi-domain]  Cd Length: 254  Bit Score: 39.82  E-value: 3.79e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863    43 KRENEDKVNKAAKH----LKTLRHPCLLRFLSCTVEADGIHLVTERVQPLE-----VALETLSPAEVCAGIYDILLALIF 113
Cdd:smart00220  33 KKKKIKKDRERILReikiLKKLKHPNIVRLYDVFEDEDKLYLVMEYCEGGDlfdllKKRGRLSEDEARFYLRQILSALEY 112
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   114 LHD-----------------------------RFLRNIQSVRDPASiPPEEMSPE-FSGlpESHGHARDAYAFGALV--- 160
Cdd:smart00220 113 LHSkgivhrdlkpenilldedghvkladfglaRQLDPGEKLTTFVG-TPEYMAPEvLLG--KGYGKAVDIWSLGVILyel 189
                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568910863   161 -----------------------DSLLPIFNEQVSADVLsSFLqilhSALLNPMPECRPALSTLLSHDFF 207
Cdd:smart00220 190 ltgkppfpgddqllelfkkigkpKPPFPPPEWDISPEAK-DLI----RKLLVKDPEKRLTAEEALQHPFF 254
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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