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Conserved domains on  [gi|568914181|ref|XP_006498337|]
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cip1-interacting zinc finger protein isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10263 super family cl35903
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


The actual alignment was detected with superfamily member PRK10263:

Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263  327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263  397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                         170       180       190
                  ....*....|....*....|....*....|
gi 568914181  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263  476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 super family cl33720
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247 2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247 2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247 2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 568914181  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


:

Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 568914181  646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


:

Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568914181   762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_SF super family cl15257
GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large ...
 615-682 2.90e-03

GIY-YIG nuclease domain superfamily; The GIY-YIG nuclease domain superfamily includes a large and diverse group of proteins involved in many cellular processes, such as class I homing GIY-YIG family endonucleases, prokaryotic nucleotide excision repair proteins UvrC and Cho, type II restriction enzymes, the endonuclease/reverse transcriptase of eukaryotic retrotransposable elements, and a family of eukaryotic enzymes that repair stalled replication forks. All of these members contain a conserved GIY-YIG nuclease domain that may serve as a scaffold for the coordination of a divalent metal ion required for catalysis of the phosphodiester bond cleavage. By combining with different specificity, targeting, or other domains, the GIY-YIG nucleases may perform different functions.


The actual alignment was detected with superfamily member cd10442:

Pssm-ID: 472790  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442    6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263  327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263  397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                         170       180       190
                  ....*....|....*....|....*....|
gi 568914181  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263  476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247 2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247 2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247 2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 568914181  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 568914181  646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 287-416 5.39e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  287 PTGQPQARVQPQTQmtAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:pfam09770 222 PAAPPAQQAQQQQQ--FPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP 299

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568914181  367 PWQLQ-------PRETDPPNQAQAQTQPQPLWQAQSQ----KQAQTQAHPQVPTQAQSQEQ 416
Cdd:pfam09770 300 TQILQnpnrlsaARVGYPQNPQPGVQPAPAHQAHRQQgsfgRQAPIITHPQQLAQLSEEEK 360
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568914181   762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_PLEs cd10442
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ...
 615-682 2.90e-03

Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.


Pssm-ID: 198389  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442    6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
 
Name Accession Description Interval E-value
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 288-477 2.21e-07

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 55.09  E-value: 2.21e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  288 TGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrqaqtqtSPEHLAPQQDQVEPQVPSQPP 367
Cdd:PRK10263  327 TTATQSWAAPVEPVTQTPPVASVDVPPAQPTVAWQPVPGPQTGEPVIAP----------APEGYPQQSQYAQPAVQYNEP 396

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  368 WQlQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPPEQASGPACATE 447
Cdd:PRK10263  397 LQ-QPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQE 475

                         170       180       190
                  ....*....|....*....|....*....|
gi 568914181  448 PQlsSHAAEAGSDPDKALPEPVSAQSSEDR 477
Cdd:PRK10263  476 PL--YQQPQPVEQQPVVEPEPVVEETKPAR 503
PHA03247 PHA03247
large tegument protein UL36; Provisional
 46-483 1.58e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 52.25  E-value: 1.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181   46 PPQASLSIPVSRGLPQQSSPQQLLSLQGLHSTSLLNGPMLQRALLLQQLQGLDQFAMPPATYDGASLTMPTATLGNLRAF 125
Cdd:PHA03247 2619 PDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSL 2698

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  126 NVTAPSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPledrED 205
Cdd:PHA03247 2699 ADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPP----AA 2774

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  206 PTEGSEEATElqmdtcedqdslVGPDSMLSEPQVPEPEPFETLEPPAkrcrrvrikgidhhnwlfaylwifASSEESTEK 285
Cdd:PHA03247 2775 PAAGPPRRLT------------RPAVASLSESRESLPSPWDPADPPA------------------------AVLAPAAAL 2818

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  286 GPTGQPQARVQPQT--QMTAPKQTQTPDRLPEPPEVQMLP----RIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVE 359
Cdd:PHA03247 2819 PPAASPAGPLPPPTsaQPTAPPPPPGPPPPSLPLGGSVAPggdvRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  360 PQVPSQPPWQLQPretdppnqaqaqtqpqplwqaqsqkQAQTQAHPQVPTQAQSQEQTSEKTQDQPQtwpqgsvPPPEQA 439
Cdd:PHA03247 2899 ALPPDQPERPPQP-------------------------QAPPPPQPQPQPPPPPQPQPPPPPPPRPQ-------PPLAPT 2946

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|....
gi 568914181  440 SGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEDRSREASA 483
Cdd:PHA03247 2947 TDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPA 2990
PHA03247 PHA03247
large tegument protein UL36; Provisional
 130-551 1.91e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 1.91e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  130 PSLAAPSLTPPQMVTPNLQQFFPQATRQSLLGPPPVGVPINPSQLNHSG-------RNTQKQARTPSSTTPNRKTVPLED 202
Cdd:PHA03247 2609 RGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPApgrvsrpRRARRLGRAAQASSPPQRPRRRAA 2688

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  203 RedPTegseeatelqmdtcedqdslVGPDSMLSEPQVPEPEPfETLEPPAKRCRRVRIKGIDHHNWLFAYLWIFASSEES 282
Cdd:PHA03247 2689 R--PT--------------------VGSLTSLADPPPPPPTP-EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  283 TEKGPTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQ-TQTSPEHLAPQQDQVEPQ 361
Cdd:PHA03247 2746 AGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADpPAAVLAPAAALPPAASPA 2825

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  362 VPSQPPWQLQPRETDPPNQAQAQTQPQPLWQA------------QSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWP 429
Cdd:PHA03247 2826 GPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVApggdvrrrppsrSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQP 2905

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  430 QgsvPPPEQASGPACATEPQLSSHAAEAGSDPDKALPEPVSAQSSEdrsrEASAGGLDLGECEKRAGEMlgmwgAGSSLK 509
Cdd:PHA03247 2906 E---RPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTD----PAGAGEPSGAVPQPWLGAL-----VPGRVA 2973

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 568914181  510 VTILQSSNSRAFNTTPLTSGPRPGDstSATPAIASTPSKQSL 551
Cdd:PHA03247 2974 VPRFRVPQPAPSREAPASSTPPLTG--HSLSRVSSWASSLAL 3013
PRK07764 PRK07764
DNA polymerase III subunits gamma and tau; Validated
 277-488 4.77e-06

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236090 [Multi-domain]  Cd Length: 824  Bit Score: 50.37  E-value: 4.77e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 277 ASSEESTEKGPTGQPQARVQPQ--TQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQ 354
Cdd:PRK07764 595 AGGEGPPAPASSGPPEEAARPAapAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKAG 674

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 355 QDQVEPQVPSQPPWQLQPRETDPPNQAQAQTQpqplWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQ----DQPQTWPQ 430
Cdd:PRK07764 675 GAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPA----ATPPAGQADDPAAQPPQAAQGASAPSPAADDPvplpPEPDDPPD 750

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 568914181 431 GSVPPPEQASGPACATEPQLSSHAAEA-GSDPDKALPEPVSAQSSEDRsREASAGGLDL 488
Cdd:PRK07764 751 PAGAPAQPPPPPAPAPAAAPAAAPPPSpPSEEEEMAEDDAPSMDDEDR-RDAEEVAMEL 808
zf-C2H2_jaz pfam12171
Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, ...
 646-670 1.87e-05

Zinc-finger double-stranded RNA-binding; This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localize in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localization.


Pssm-ID: 432381 [Multi-domain]  Cd Length: 27  Bit Score: 42.16  E-value: 1.87e-05
                          10        20
                  ....*....|....*....|....*
gi 568914181  646 FCTICNRYFKTPRKFVEHVKSQGHK 670
Cdd:pfam12171   3 YCVLCDKYFKSENALQNHLKSKKHK 27
PHA03247 PHA03247
large tegument protein UL36; Provisional
 139-461 3.25e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 48.01  E-value: 3.25e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  139 PPQMVTPNLQqffPQATRQSLLGPPPVGVPINPSQlnhsgrnTQKQARTPSSTTPNRKTVPLEDREDPtEGSEEATELQM 218
Cdd:PHA03247 2551 PPPPLPPAAP---PAAPDRSVPPPRPAPRPSEPAV-------TSRARRPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP 2619

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  219 DTCEDQDSLVGPDSMLSEPQVPEPEPFETLEPP--------AKRCRRVRIKGidhhnwlfaylwiFASSEESTEKGPTgq 290
Cdd:PHA03247 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPrddpapgrVSRPRRARRLG-------------RAAQASSPPQRPR-- 2684

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  291 PQARVQPQTQMTAPKQTQTPDRLPEPPevqmlPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQ-----VEPQVPSQ 365
Cdd:PHA03247 2685 RRAARPTVGSLTSLADPPPPPPTPEPA-----PHALVSATPLPPGPAAARQASPALPAAPAPPAVPAgpatpGGPARPAR 2759

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  366 PPWQLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTW-PQGSVPPPEQA--SGP 442
Cdd:PHA03247 2760 PPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAAsPAGPLPPPTSAqpTAP 2839

                         330
                  ....*....|....*....
gi 568914181  443 ACATEPQLSSHAAEAGSDP 461
Cdd:PHA03247 2840 PPPPGPPPPSLPLGGSVAP 2858
PRK10927 PRK10927
cell division protein FtsN;
281-439 3.43e-05

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 46.98  E-value: 3.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 281 ESTEKGPTGQPQARVQPQTQMTAPKQT---QTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQ 357
Cdd:PRK10927 101 EPSAGGEVKTPEQLTPEQRQLLEQMQAdmrQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQ 180

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 358 VEPQVPSQPPWQLQPRetdPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPT--QAQSQEQTSEKTQDQPQTWPQGSVPP 435
Cdd:PRK10927 181 QQTRTSQAAPVQAQPR---QSKPASTQQPYQDLLQTPAHTTAQSKPQQAAPVtrAADAPKPTAEKKDERRWMVQCGSFRG 257


                 ....
gi 568914181 436 PEQA 439
Cdd:PRK10927 258 AEQA 261
PRK14949 PRK14949
DNA polymerase III subunits gamma and tau; Provisional
 278-425 5.19e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237863 [Multi-domain]  Cd Length: 944  Bit Score: 47.03  E-value: 5.19e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 278 SSEESTEKGPTGQPQARVQPQTQmTAPKQTQTPDRLPEPPEVQMLPR--IQPQALQIQTQPKLLRQAQTQTSPEHLAPQQ 355
Cdd:PRK14949 639 SSADRKPKTPPSRAPPASLSKPA-SSPDASQTSASFDLDPDFELATHqsVPEAALASGSAPAPPPVPDPYDRPPWEEAPE 717

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 356 DQVEPQVPSQPPwqlqpRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQP 425
Cdd:PRK14949 718 VASANDGPNNAA-----EGNLSESVEDASNSELQAVEQQATHQPQVQAEAQSPASTTALTQTSSEVQDTE 782
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 316-436 1.51e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 45.85  E-value: 1.51e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  316 PPEVQMLPRIQPQAlqiQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQPPWQLQPRETDPPNQAQAqtqpqplwqAQS 395
Cdd:PRK10263  740 PHEPLFTPIVEPVQ---QPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQY---------QQP 807

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 568914181  396 QKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVPPP 436
Cdd:PRK10263  808 QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHP 848
PRK07994 PRK07994
DNA polymerase III subunits gamma and tau; Validated
 287-419 2.81e-04

DNA polymerase III subunits gamma and tau; Validated


Pssm-ID: 236138 [Multi-domain]  Cd Length: 647  Bit Score: 44.47  E-value: 2.81e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 287 PTGQPQARVQPQTQMTAPKQTQTPdrlPEPPEVQMLPRIQPQALQIQTQpklLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:PRK07994 383 ATAAPTAAVAPPQAPAVPPPPASA---PQQAPAVPLPETTSQLLAARQQ---LQRAQGATKAKKSEPAAASRARPVNSAL 456

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 568914181 367 PW--QLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSE 419
Cdd:PRK07994 457 ERlaSVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPE 511
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 290-375 2.89e-04

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 44.69  E-value: 2.89e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  290 QPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrQAQTQTSPEHLAPQQDQVEPQVPSQPpwq 369
Cdd:PRK10263  767 QPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPVAP--- 839


                  ....*.
gi 568914181  370 lQPRET 375
Cdd:PRK10263  840 -QPQDT 844
PAT1 pfam09770
Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate ...
 287-416 5.39e-04

Topoisomerase II-associated protein PAT1; Members of this family are necessary for accurate chromosome transmission during cell division.


Pssm-ID: 401645 [Multi-domain]  Cd Length: 846  Bit Score: 43.87  E-value: 5.39e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  287 PTGQPQARVQPQTQmtAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPKLLRQAQTQTSPEHLAPQQDQVEPQVPSQP 366
Cdd:pfam09770 222 PAAPPAQQAQQQQQ--FPPQIQQQQQPQQQPQQPQQHPGQGHPVTILQRPQSPQPDPAQPSIQPQAQQFHQQPPPVPVQP 299

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568914181  367 PWQLQ-------PRETDPPNQAQAQTQPQPLWQAQSQ----KQAQTQAHPQVPTQAQSQEQ 416
Cdd:pfam09770 300 TQILQnpnrlsaARVGYPQNPQPGVQPAPAHQAHRQQgsfgRQAPIITHPQQLAQLSEEEK 360
PRK10263 PRK10263
DNA translocase FtsK; Provisional
 287-378 1.41e-03

DNA translocase FtsK; Provisional


Pssm-ID: 236669 [Multi-domain]  Cd Length: 1355  Bit Score: 42.38  E-value: 1.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181  287 PTGQPQARVQPQTQMTAPKQTQTPDRLPEPPEVQMLPRIQPQALQIQTQPkllrQAQTQTSPEHLAPQQDQVEPQVP--S 364
Cdd:PRK10263  751 PVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP----QPQYQQPQQPVAPQPQYQQPQQPvaP 826

                          90
                  ....*....|....
gi 568914181  365 QPPWQlQPRETDPP 378
Cdd:PRK10263  827 QPQYQ-QPQQPVAP 839
ZnF_U1 smart00451
U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ...
 762-795 1.66e-03

U1-like zinc finger; Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.


Pssm-ID: 197732 [Multi-domain]  Cd Length: 35  Bit Score: 36.85  E-value: 1.66e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568914181   762 GYVCQICHKFYDSNSELRlSHCKSLAHFENLQKY 795
Cdd:smart00451   3 GFYCKLCNVTFTDEISVE-AHLKGKKHKKNVKKR 35
GIY-YIG_PLEs cd10442
Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This ...
 615-682 2.90e-03

Catalytic GIY-YIG endonuclease domain of penelope-like elements and similar proteins; This model corresponds to the EN domain of PLEs that contains catalytic module of the GIY-YIG endonucleases of group I bacterial/organellar introns, as well as bacterial UvrC DNA repair proteins. It can cleave DNA with low nucleotide sequence specificity. However, the PLEs EN domain is distinct from other GIY-YIG endonucleases by the presence of a well-conserved CCHH motif (CX(2-7)CX(33-39)HX(3-5)H, X can be any residue). The role of the CCHH motif has not yet been identified. Penelope-like elements (PLEs) represent a novel class of eukaryotic retroelements, which do not belong to either long terminal repeat (LTR) retrotransposons or non-LTR retrotransposons (often called LINEs), but instead form a sister clade to telomerase reverse transcriptases (TERTs), highly specialized non-mobile reverse transcriptases (RTs) which are responsible for the addition of telomeric repeats to the ends of eukaryotic chromosomes. The single open reading frame (ORF) encoded by PLE consists of two principal domains, RT domain and endonuclease (EN) domain, jointed by a linker region of variable length. Both of these two domains are functionally active.


Pssm-ID: 198389  Cd Length: 92  Bit Score: 37.73  E-value: 2.90e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 615 WCNTCQVYYVGDLIQ--HRRTQEHKVAKQSlrpfcticNRYFKTPrkFVEHVKSQGHKDKAQELKTLEKE 682
Cdd:cd10442    6 PCPKCGLVYIGETKRplRERMKEHRRAIRL--------SGTKKSA--VAKHFNEEGHSIDSDRVRILDKE 65
PHA03379 PHA03379
EBNA-3A; Provisional
 130-442 3.14e-03

EBNA-3A; Provisional


Pssm-ID: 223066 [Multi-domain]  Cd Length: 935  Bit Score: 41.20  E-value: 3.14e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 130 PSLAAPSLTPPQMVTPNLQQFFP--------QATRQSLLGPPPVGVPINPSQLNHSGRNTQKQARTPSSTTPNRKTVPLE 201
Cdd:PHA03379 508 PWEASLSQVPGVAFAPVMPQPMPvepvpvptVALERPVCPAPPLIAMQGPGETSGIVRVRERWRPAPWTPNPPRSPSQMS 587

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 202 DREDPTEGSEEATELQ--MDTCEDQDSLVGPDSMLSEPQVPEPEPFETlEPPAKRCRRVRIKGIdhhnwlfaylwifass 279
Cdd:PHA03379 588 VRDRLARLRAEAQPYQasVEVQPPQLTQVSPQQPMEYPLEPEQQMFPG-SPFSQVADVMRAGGV---------------- 650

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 280 eestekgPTGQPQARVQPQTQMTAPKQTQTPDR---LPEPPevqmLPRIQPQALQIqtqpKLLRQAQTQTSPEHLAPQQD 356
Cdd:PHA03379 651 -------PAMQPQYFDLPLQQPISQGAPLAPLRasmGPVPP----VPATQPQYFDI----PLTEPINQGASAAHFLPQQP 715

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 357 QVEPQVPSQPPWQ-LQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSqeqtsektqdQPQTWP-QGSVP 434
Cdd:PHA03379 716 MEGPLVPERWMFQgATLSQSVRPGVAQSQYFDLPLTQPINHGAPAAHFLHQPPMEGPW----------VPEQWMfQGAPP 785


                 ....*...
gi 568914181 435 PPEQASGP 442
Cdd:PHA03379 786 SQGTDVVQ 793
PRK10927 PRK10927
cell division protein FtsN;
292-447 7.04e-03

cell division protein FtsN;


Pssm-ID: 236797 [Multi-domain]  Cd Length: 319  Bit Score: 39.66  E-value: 7.04e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 292 QARVQPQTQMTAPKQTQTPDRLpEPPEVQMLPRIQPQALQIQTQpkLLRQAQTQTSPEHLAP--QQDQVEPQVPSQPPWQ 369
Cdd:PRK10927  93 QPGVRAPTEPSAGGEVKTPEQL-TPEQRQLLEQMQADMRQQPTQ--LVEVPWNEQTPEQRQQtlQRQRQAQQLAEQQRLA 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 370 LQPRETDPPNQAQAQTQPqplwqaQSQKQAQTQAHPQVPTQAQSQE--QTSEKTQDQPQtwPQGSVPPPEQASGPACATE 447
Cdd:PRK10927 170 QQSRTTEQSWQQQTRTSQ------AAPVQAQPRQSKPASTQQPYQDllQTPAHTTAQSK--PQQAAPVTRAADAPKPTAE 241
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 284-469 7.99e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 40.06  E-value: 7.99e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 284 EKGPTGQPQARVQPQtqmtAPKQTQTPDRlPEPPEVQMLPRI--------QPQALQIQTQPKLLRQAQTQTSPEHLAPQQ 355
Cdd:PTZ00449 566 EHKPSKIPTLSKKPE----FPKDPKHPKD-PEEPKKPKRPRSaqrptrpkSPKLPELLDIPKSPKRPESPKSPKRPPPPQ 640

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568914181 356 DQVEPQVPSQPPWQLQPRETDPPNQAQAQTQPQPLWQAQSQKQAQTQAHPQVPTQAQSQEQTSEKTQDQPQTWPQGSVP- 434
Cdd:PTZ00449 641 RPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRp 720

                        170       180       190
                 ....*....|....*....|....*....|....*.
gi 568914181 435 -PPEQASGPACATEPQlsshaaeagSDPDKALPEPV 469
Cdd:PTZ00449 721 lPPKLPRDEEFPFEPI---------GDPDAEQPDDI 747
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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