NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568922704|ref|XP_006501500|]
View 

box C/D snoRNA protein 1 isoform X2 [Mus musculus]

Protein Classification

zinc finger HIT domain-containing protein( domain architecture ID 10517054)

zinc finger HIT domain-containing protein may be involved in Box C/D snoRNP Biogenesis

CATH:  3.30.60.190
Gene Ontology:  GO:0046872
SCOP:  4000536

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
zf-HIT pfam04438
HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could ...
66-93 1.65e-06

HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interact with the ligand binding domain of the thyroid receptor.


:

Pssm-ID: 398237  Cd Length: 30  Bit Score: 43.78  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*...
gi 568922704   66 RCETCGtEEAKYRCPRCMRFSCSLPCVK 93
Cdd:pfam04438   4 LCSVCG-NPSKYRCPRCGVRYCSLECYK 30
 
Name Accession Description Interval E-value
zf-HIT pfam04438
HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could ...
66-93 1.65e-06

HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interact with the ligand binding domain of the thyroid receptor.


Pssm-ID: 398237  Cd Length: 30  Bit Score: 43.78  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*...
gi 568922704   66 RCETCGtEEAKYRCPRCMRFSCSLPCVK 93
Cdd:pfam04438   4 LCSVCG-NPSKYRCPRCGVRYCSLECYK 30
 
Name Accession Description Interval E-value
zf-HIT pfam04438
HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could ...
66-93 1.65e-06

HIT zinc finger; This presumed zinc finger contains up to 6 cysteine residues that could coordinate zinc. The domain is named after the HIT protein. This domain is also found in the Thyroid receptor interacting protein 3 (TRIP-3) that specifically interact with the ligand binding domain of the thyroid receptor.


Pssm-ID: 398237  Cd Length: 30  Bit Score: 43.78  E-value: 1.65e-06
                          10        20
                  ....*....|....*....|....*...
gi 568922704   66 RCETCGtEEAKYRCPRCMRFSCSLPCVK 93
Cdd:pfam04438   4 LCSVCG-NPSKYRCPRCGVRYCSLECYK 30
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH