|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
1.26e-56 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
:
Pssm-ID: 214560 Cd Length: 184 Bit Score: 194.50 E-value: 1.26e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 50 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCVSASSQPLGPR--QSIRPGG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 568928171 205 HVFLGLDAEQGKPVSFDLQQAHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
665-868 |
6.97e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 112.69 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 665 GEKGEPGSPG-FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGDgctacpslqgal 743
Cdd:NF038329 117 GEKGEPGPAGpAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA------------ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 744 tdvsglPGKPGPKGEPGPEG-VGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGP 822
Cdd:NF038329 185 ------KGPAGEKGPQGPRGeTGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGK 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 823 PGSAGEKGAQGSPGPKGAIGPMGPPGA-------GVSGPPGQKGSRGEKGEPG 868
Cdd:NF038329 259 DGPRGDRGEAGPDGPDGKDGERGPVGPagkdgqnGKDGLPGKDGKDGQNGKDG 311
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
503-725 |
1.41e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.59 E-value: 1.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 503 KGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAWEGlGTVGLKGDRGDPGIQGMKGEKGEPCSSCSSGvgaqH 582
Cdd:NF038329 134 QGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA-GKDGEAGAKGPAGEKGPQGPRGETGPAGEQG----P 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 583 LGPSPGHGLPGLPGTSGIPGPRGlKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEPCTALSELQDGDMrvvHLPG 662
Cdd:NF038329 209 AGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGER---GPVG 284
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568928171 663 PAGEKGEPGSPGfgLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGP 725
Cdd:NF038329 285 PAGKDGQNGKDG--LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1054-1273 |
3.36e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.44 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1054 GSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGE 1133
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1134 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1213
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1214 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
3.95e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 67.24 E-value: 3.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1290 qgppgqpgppglstvGLKGDRGVPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
331-541 |
2.55e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.91 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 331 GPSGLKGGKGERGLTGPSGPKGEKGARGNDCVRVSPDAplqcvEGPKGEKGESGDLGPPGLPGPTGQKGQKGEKGDGGLK 410
Cdd:NF038329 147 GPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA-----KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 411 GLPGKPGRDGRP--GEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGEKGSSGIPGKE 488
Cdd:NF038329 222 GEDGPAGPAGDGqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKD 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 489 GPGGKPGKPGVPGTKGEKGDPCEvcptlpegsqnfVGLPGKPGPKGEPGDPAP 541
Cdd:NF038329 302 GKDGQNGKDGLPGKDGKDGQPGK------------DGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB super family |
cl45768 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
827-1144 |
9.41e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
The actual alignment was detected with superfamily member NF038329:
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.82 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 827 GEKGAQGSPGPKGAIGPMGPPG-AGVSGPPGQKGSRGEKGEPGEcscpsrgepifsgmPGAPGlwmgsssqpgPQGPPGV 905
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGdRGETGPAGPAGPPGPQGERGE--------------KGPAG----------PQGEAGP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 906 PGPPGPPGMPGLQGVPGHNGLPGQPGltaelgslpiekhllksicgdcaqgqtahpafllEKGEKGDQGIPGVPGFDNCA 985
Cdd:NF038329 173 QGPAGKDGEAGAKGPAGEKGPQGPRG----------------------------------ETGPAGEQGPAGPAGPDGEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 986 RCFIERERPRAEEARGDNSEGEPGcsgspglpgppgmpgqrgeegppgmrgspgppgpigPPGFPGAVGSPGLPGLQGER 1065
Cdd:NF038329 219 GPAGEDGPAGPAGDGQQGPDGDPG------------------------------------PTGEDGPQGPDGPAGKDGPR 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 1066 GLTGLTGDKGEPGPPGQPgypgamGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKG 1144
Cdd:NF038329 263 GDRGEAGPDGPDGKDGER------GPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
1.26e-56 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 194.50 E-value: 1.26e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 50 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCVSASSQPLGPR--QSIRPGG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 568928171 205 HVFLGLDAEQGKPVSFDLQQAHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
665-868 |
6.97e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 112.69 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 665 GEKGEPGSPG-FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGDgctacpslqgal 743
Cdd:NF038329 117 GEKGEPGPAGpAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA------------ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 744 tdvsglPGKPGPKGEPGPEG-VGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGP 822
Cdd:NF038329 185 ------KGPAGEKGPQGPRGeTGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGK 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 823 PGSAGEKGAQGSPGPKGAIGPMGPPGA-------GVSGPPGQKGSRGEKGEPG 868
Cdd:NF038329 259 DGPRGDRGEAGPDGPDGKDGERGPVGPagkdgqnGKDGLPGKDGKDGQNGKDG 311
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
544-794 |
9.38e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 109.61 E-value: 9.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 544 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlgpspghGLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPG 623
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------------GPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQG 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 624 SPGPVGPA------------GIKGAKGEPCEPCTALSELQDGDMRVVHLPGPAGEKGEPGSPGFGLPGKQGKAGERGLKG 691
Cdd:NF038329 169 EAGPQGPAgkdgeagakgpaGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDG 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 692 QKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGdgctacpslQGALTDVSGLPGKPGPKGEPGPEGVghPGKPG 771
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAG---------KDGQNGKDGLPGKDGKDGQNGKDGL--PGKDG 317
|
250 260
....*....|....*....|...
gi 568928171 772 QPGLPGVQGPPGPKGTQGEPGPP 794
Cdd:NF038329 318 KDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
503-725 |
1.41e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.59 E-value: 1.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 503 KGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAWEGlGTVGLKGDRGDPGIQGMKGEKGEPCSSCSSGvgaqH 582
Cdd:NF038329 134 QGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA-GKDGEAGAKGPAGEKGPQGPRGETGPAGEQG----P 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 583 LGPSPGHGLPGLPGTSGIPGPRGlKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEPCTALSELQDGDMrvvHLPG 662
Cdd:NF038329 209 AGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGER---GPVG 284
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568928171 663 PAGEKGEPGSPGfgLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGP 725
Cdd:NF038329 285 PAGKDGQNGKDG--LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1054-1273 |
3.36e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.44 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1054 GSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGE 1133
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1134 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1213
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1214 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1060-1273 |
2.10e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 93.05 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1060 GLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGS 1139
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1140 SGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP-----GPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGK 1214
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 1215 DGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1090-1274 |
1.99e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 86.88 E-value: 1.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1090 GPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGA 1169
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1170 PGPPGPQAEKGSEGIRGPSGLPGSPGPPG--PPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGL 1247
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQqgPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180
....*....|....*....|....*..
gi 568928171 1248 PGPKGDCGKPGPPGSSGRPGAEGEPGA 1274
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKDGL 312
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
335-705 |
7.96e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 81.88 E-value: 7.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 335 LKGGKGERGLTGPSGPKGEKgargndcvrvspdaplqcveGPKGEKGEsgdlgppglpgpTGQKGQKGEKGDGGLKGLPG 414
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQ--------------------GPRGDRGE------------TGPAGPAGPPGPQGERGEKG 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 415 KPGRDGRPGEICVIGPKGQKGDPGFVGPeglagepgppglpgppgiglpgtpgdpggppgpkgekgssgipgkegpggkp 494
Cdd:NF038329 163 PAGPQGEAGPQGPAGKDGEAGAKGPAGE---------------------------------------------------- 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 495 gkpgvpgtKGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAweGLGTVGLKGDRGDPGIQGMKGEKGEpcssc 574
Cdd:NF038329 191 --------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPTGEDGPQGPDGP----- 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 575 ssgvgaqhlgpspghglpglpgtsgiPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGepcepctalselQDGd 654
Cdd:NF038329 256 --------------------------AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG------------KDG- 296
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568928171 655 mrvvhLPGPAGEKGEPGSPgfGLPGKQGKAGERGLKGQKGDAGNPGDPGTP 705
Cdd:NF038329 297 -----LPGKDGKDGQNGKD--GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1108-1411 |
6.18e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.18 E-value: 6.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1108 GEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGfqgqpgfpgppgppgfpgKAGAPGPPGPQAEKGSEGirgp 1187
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQG------------------ERGEKGPAGPQGEAGPQG---- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1188 sglpgspgppgppgiqgpagldgLDGKDGKPGLRGDPGPagppglmgppgfKGKTGHPGLPGPKGDCGKPGPPGSSGRPG 1267
Cdd:NF038329 175 -----------------------PAGKDGEAGAKGPAGE------------KGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1268 AEGEPGAMGPQGRPGPPGHlgpqgppgqpgppglstvGLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEG 1347
Cdd:NF038329 220 PAGEDGPAGPAGDGQQGPD------------------GDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1348 PPGKQGLYGPPGPKGDPGPAGQKGQAgekGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1411
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQN---GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
3.95e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 67.24 E-value: 3.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1290 qgppgqpgppglstvGLKGDRGVPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1304-1518 |
8.01e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 8.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1304 VGLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPG 1383
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1384 GPGKSGSMGPIGPPGPAGERGHPGSP-----GPAGNPGLPGLPGSMG-DMVNYDDIKRFIRQEIIKlfdermayytsrmQ 1457
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGpDGPAGKDGPRGDRGEAGP-------------D 271
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568928171 1458 FPMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:NF038329 272 GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1305-1518 |
4.91e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 4.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1305 GLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1384
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1385 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1464
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
595-855 |
2.61e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 58.50 E-value: 2.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 595 PGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAkgepcepctalselqdgdmrvvhlPGPAGEKGEPGSPG 674
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRP------------------------AQNQGSTTPAGNTG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 675 FGLP-GKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGdgctacpslqGALTDVSGLPGKP 753
Cdd:COG5164 62 GTRPaGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATG----------PPDDGGSTTPPSG 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 754 GPKGEPGPEGVGHPGkPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQG 833
Cdd:COG5164 132 GSTTPPGDGGSTPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVK 210
|
250 260
....*....|....*....|..
gi 568928171 834 SPGPKGAIGPmgPPGAGVSGPP 855
Cdd:COG5164 211 KDDKNGKGNP--PDDRGGKTGP 230
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
762-1137 |
7.65e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.84 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 762 EGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPG-TGAEGPQGEPGTQGLPGtqglpgprgppgSAGEKGAQGSPGPKGA 840
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGeTGPAGPAGPPGPQGERG------------EKGPAGPQGEAGPQGP 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 841 IGPMGPPGAgvSGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGLwmgsssqpgpqgppgvpgppgppgmpglqgv 920
Cdd:NF038329 176 AGKDGEAGA--KGPAGEKGPQGPRGETGP-----AGEQGPAGPAGPDGE------------------------------- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 921 PGHNGLPGQPGLTaelgslpiekhllksicGDCAQGQTAHPAfllEKGEKGDQGIPGVPGFDncarcfiererpraeear 1000
Cdd:NF038329 218 AGPAGEDGPAGPA-----------------GDGQQGPDGDPG---PTGEDGPQGPDGPAGKD------------------ 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1001 gdnsegepgcsgspglpgppgmpgqrgeegppgmrgspgppgpigppgfpgavGSPGLPGLQGERGLTGLTGDKGEPGPP 1080
Cdd:NF038329 260 -----------------------------------------------------GPRGDRGEAGPDGPDGKDGERGPVGPA 286
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568928171 1081 GQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQ 1137
Cdd:NF038329 287 GKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
331-541 |
2.55e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.91 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 331 GPSGLKGGKGERGLTGPSGPKGEKGARGNDCVRVSPDAplqcvEGPKGEKGESGDLGPPGLPGPTGQKGQKGEKGDGGLK 410
Cdd:NF038329 147 GPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA-----KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 411 GLPGKPGRDGRP--GEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGEKGSSGIPGKE 488
Cdd:NF038329 222 GEDGPAGPAGDGqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKD 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 489 GPGGKPGKPGVPGTKGEKGDPCEvcptlpegsqnfVGLPGKPGPKGEPGDPAP 541
Cdd:NF038329 302 GKDGQNGKDGLPGKDGKDGQPGK------------DGLPGKDGKDGQPGKPAP 342
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1089-1142 |
4.23e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 4.23e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1089 MGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1142
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1369-1547 |
4.89e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.59 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1369 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1448
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1449 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG-VGIAGENGL 1527
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 568928171 1528 PGPPGPQGPPGYGKMGATGP 1547
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
644-867 |
4.91e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 644 CTALSELQDGDMRVVHLPGPAgekgePGSPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPA 723
Cdd:PRK07764 571 VTALAEELGGDWQVEAVVGPA-----PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 724 GPKGEKGDGctACPSLQGALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQPGlPGVQGPPGPKGTQGEPGPPGTGAEGPQG 803
Cdd:PRK07764 646 GVAAPEHHP--KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA-GAAPAQPAPAPAATPPAGQADDPAAQPP 722
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568928171 804 EPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGAiGPMGPPGAGVSGPPGQKGSRGEKGEP 867
Cdd:PRK07764 723 QAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP-PPPAPAPAAAPAAAPPPSPPSEEEEM 785
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
827-1144 |
9.41e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.82 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 827 GEKGAQGSPGPKGAIGPMGPPG-AGVSGPPGQKGSRGEKGEPGEcscpsrgepifsgmPGAPGlwmgsssqpgPQGPPGV 905
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGdRGETGPAGPAGPPGPQGERGE--------------KGPAG----------PQGEAGP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 906 PGPPGPPGMPGLQGVPGHNGLPGQPGltaelgslpiekhllksicgdcaqgqtahpafllEKGEKGDQGIPGVPGFDNCA 985
Cdd:NF038329 173 QGPAGKDGEAGAKGPAGEKGPQGPRG----------------------------------ETGPAGEQGPAGPAGPDGEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 986 RCFIERERPRAEEARGDNSEGEPGcsgspglpgppgmpgqrgeegppgmrgspgppgpigPPGFPGAVGSPGLPGLQGER 1065
Cdd:NF038329 219 GPAGEDGPAGPAGDGQQGPDGDPG------------------------------------PTGEDGPQGPDGPAGKDGPR 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 1066 GLTGLTGDKGEPGPPGQPgypgamGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKG 1144
Cdd:NF038329 263 GDRGEAGPDGPDGKDGER------GPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1466-1518 |
3.19e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.17 E-value: 3.19e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 1466 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
754-812 |
4.87e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.87e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 754 GPKGEPGPegvghPGKPGQPGLPGVQGPPGPKGTQGEPGPPG-TGAEGPQGEPGTQGLPG 812
Cdd:pfam01391 1 GPPGPPGP-----PGPPGPPGPPGPPGPPGPPGPPGEPGPPGpPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
590-643 |
8.70e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.01 E-value: 8.70e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 590 GLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEP 643
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| TSPN |
smart00210 |
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of ... |
50-231 |
1.26e-56 |
|
Thrombospondin N-terminal -like domains; Heparin-binding and cell adhesion domain of thrombospondin
Pssm-ID: 214560 Cd Length: 184 Bit Score: 194.50 E-value: 1.26e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 50 GFNLIRRLNLM-KTSAIKKIRNPKGP-LILRLG-AAPVTQPTRRVFPRGLPEEFALVLTVLLKKhtfRNTWYLFQVTDAN 126
Cdd:smart00210 1 GQDLLQVFDLPsLSFAIRQVVGPEPGsPAYRLGdPALVPQPTRDLFPSGLPEDFSLLTTFRQTP---KSRGVLFAIYDAQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 127 GYPQISLEVNSQERSLELRAQGQDGDFVSCIFPVPQLFDLRWHKLMLSVAGRVASVHVDCVSASSQPLGPR--QSIRPGG 204
Cdd:smart00210 78 NVRQFGLEVDGRANTLLLRYQGVDGKQHTVSFRNLPLADGQWHKLALSVSGSSATLYVDCNEIDSRPLDRPgqPPIDTDG 157
|
170 180
....*....|....*....|....*..
gi 568928171 205 HVFLGLDAEQGKPVSFDLQQAHIYCDP 231
Cdd:smart00210 158 IEVRGAQAADRKPFQGDLQQLKIVCDP 184
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
665-868 |
6.97e-26 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 112.69 E-value: 6.97e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 665 GEKGEPGSPG-FGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGDgctacpslqgal 743
Cdd:NF038329 117 GEKGEPGPAGpAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA------------ 184
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 744 tdvsglPGKPGPKGEPGPEG-VGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGP 822
Cdd:NF038329 185 ------KGPAGEKGPQGPRGeTGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDGPQGPDGPAGK 258
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 823 PGSAGEKGAQGSPGPKGAIGPMGPPGA-------GVSGPPGQKGSRGEKGEPG 868
Cdd:NF038329 259 DGPRGDRGEAGPDGPDGKDGERGPVGPagkdgqnGKDGLPGKDGKDGQNGKDG 311
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
544-794 |
9.38e-25 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 109.61 E-value: 9.38e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 544 EGLGTVGLKGDRGDPGIQGMKGEKGEPcsscssgvgaqhlgpspghGLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPG 623
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQ-------------------GPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQG 168
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 624 SPGPVGPA------------GIKGAKGEPCEPCTALSELQDGDMRVVHLPGPAGEKGEPGSPGFGLPGKQGKAGERGLKG 691
Cdd:NF038329 169 EAGPQGPAgkdgeagakgpaGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPDGDPGPTGEDG 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 692 QKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGdgctacpslQGALTDVSGLPGKPGPKGEPGPEGVghPGKPG 771
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAG---------KDGQNGKDGLPGKDGKDGQNGKDGL--PGKDG 317
|
250 260
....*....|....*....|...
gi 568928171 772 QPGLPGVQGPPGPKGTQGEPGPP 794
Cdd:NF038329 318 KDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
503-725 |
1.41e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 99.59 E-value: 1.41e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 503 KGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAWEGlGTVGLKGDRGDPGIQGMKGEKGEPCSSCSSGvgaqH 582
Cdd:NF038329 134 QGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPA-GKDGEAGAKGPAGEKGPQGPRGETGPAGEQG----P 208
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 583 LGPSPGHGLPGLPGTSGIPGPRGlKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEPCTALSELQDGDMrvvHLPG 662
Cdd:NF038329 209 AGPAGPDGEAGPAGEDGPAGPAG-DGQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGER---GPVG 284
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568928171 663 PAGEKGEPGSPGfgLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGP 725
Cdd:NF038329 285 PAGKDGQNGKDG--LPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPKTP 345
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1054-1273 |
3.36e-21 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 98.44 E-value: 3.36e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1054 GSPGLPGLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGE 1133
Cdd:NF038329 120 GEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGE 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1134 RGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKaGAPGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDG 1213
Cdd:NF038329 200 TGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGD-GQQGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDG 278
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1214 KDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 279 ERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1060-1273 |
2.10e-19 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 93.05 E-value: 2.10e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1060 GLQGERGLTGLTGDKGEPGPPGQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGS 1139
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGP 196
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1140 SGEKGDQGFQGQPGFPGPPGPPGFPGKAGAPGPP-----GPQAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGK 1214
Cdd:NF038329 197 RGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGK 276
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 1215 DGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPG 1273
Cdd:NF038329 277 DGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1090-1274 |
1.99e-17 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 86.88 E-value: 1.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1090 GPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGFQGQPGFPGPPGPPGFPGKAGA 1169
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGE 205
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1170 PGPPGPQAEKGSEGIRGPSGLPGSPGPPG--PPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGL 1247
Cdd:NF038329 206 QGPAGPAGPDGEAGPAGEDGPAGPAGDGQqgPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGP 285
|
170 180
....*....|....*....|....*..
gi 568928171 1248 PGPKGDCGKPGPPGSSGRPGAEGEPGA 1274
Cdd:NF038329 286 AGKDGQNGKDGLPGKDGKDGQNGKDGL 312
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
335-705 |
7.96e-16 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 81.88 E-value: 7.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 335 LKGGKGERGLTGPSGPKGEKgargndcvrvspdaplqcveGPKGEKGEsgdlgppglpgpTGQKGQKGEKGDGGLKGLPG 414
Cdd:NF038329 115 GDGEKGEPGPAGPAGPAGEQ--------------------GPRGDRGE------------TGPAGPAGPPGPQGERGEKG 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 415 KPGRDGRPGEICVIGPKGQKGDPGFVGPeglagepgppglpgppgiglpgtpgdpggppgpkgekgssgipgkegpggkp 494
Cdd:NF038329 163 PAGPQGEAGPQGPAGKDGEAGAKGPAGE---------------------------------------------------- 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 495 gkpgvpgtKGEKGDPCEVCPTLPEGSQNFVGLPGKPGPKGEPGDPAPAweGLGTVGLKGDRGDPGIQGMKGEKGEpcssc 574
Cdd:NF038329 191 --------KGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPA--GDGQQGPDGDPGPTGEDGPQGPDGP----- 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 575 ssgvgaqhlgpspghglpglpgtsgiPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGepcepctalselQDGd 654
Cdd:NF038329 256 --------------------------AGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNG------------KDG- 296
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568928171 655 mrvvhLPGPAGEKGEPGSPgfGLPGKQGKAGERGLKGQKGDAGNPGDPGTP 705
Cdd:NF038329 297 -----LPGKDGKDGQNGKD--GLPGKDGKDGQPGKDGLPGKDGKDGQPGKP 340
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1108-1411 |
6.18e-15 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 79.18 E-value: 6.18e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1108 GEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKGDQGfqgqpgfpgppgppgfpgKAGAPGPPGPQAEKGSEGirgp 1187
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQG------------------ERGEKGPAGPQGEAGPQG---- 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1188 sglpgspgppgppgiqgpagldgLDGKDGKPGLRGDPGPagppglmgppgfKGKTGHPGLPGPKGDCGKPGPPGSSGRPG 1267
Cdd:NF038329 175 -----------------------PAGKDGEAGAKGPAGE------------KGPQGPRGETGPAGEQGPAGPAGPDGEAG 219
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1268 AEGEPGAMGPQGRPGPPGHlgpqgppgqpgppglstvGLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEG 1347
Cdd:NF038329 220 PAGEDGPAGPAGDGQQGPD------------------GDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERG 281
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1348 PPGKQGLYGPPGPKGDPGPAGQKGQAgekGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGP 1411
Cdd:NF038329 282 PVGPAGKDGQNGKDGLPGKDGKDGQN---GKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAP 342
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1210-1509 |
3.95e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 67.24 E-value: 3.95e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1210 GLDGKDGKPGLRGDPGPAGPPGLMGPPGFKGKTGHPGLPGPKGDCGKPGPPGSSGRPGAEGEPGAMGPQGRPgppghlgp 1289
Cdd:NF038329 126 GPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPR-------- 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1290 qgppgqpgppglstvGLKGDRGVPGERGLAGlpgqpgtpghpgppgEPGSDGAAGKEGPPGKQGlygppgpkgdpgpAGQ 1369
Cdd:NF038329 198 ---------------GETGPAGEQGPAGPAG---------------PDGEAGPAGEDGPAGPAG-------------DGQ 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1370 KGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvNYDDikrfirqeiiklfderm 1449
Cdd:NF038329 235 QGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQ--NGKD----------------- 295
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1450 ayytsrmqfpmevaaapGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPG 1509
Cdd:NF038329 296 -----------------GLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPG 338
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1304-1518 |
8.01e-11 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 66.08 E-value: 8.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1304 VGLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGLYGPPGPKGDPGPAGQKGQAGEKGRSGMPG 1383
Cdd:NF038329 125 AGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAG 204
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1384 GPGKSGSMGPIGPPGPAGERGHPGSP-----GPAGNPGLPGLPGSMG-DMVNYDDIKRFIRQEIIKlfdermayytsrmQ 1457
Cdd:NF038329 205 EQGPAGPAGPDGEAGPAGEDGPAGPAgdgqqGPDGDPGPTGEDGPQGpDGPAGKDGPRGDRGEAGP-------------D 271
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568928171 1458 FPMEVAAAPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:NF038329 272 GPDGKDGERGPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDG 332
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1305-1518 |
4.91e-10 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 63.77 E-value: 4.91e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1305 GLKGDRGVPGERGLAGLPGQPGTPGHPGPPGEPGSDGAAGKEGPPGKQGlygppgpkgDPGPAGQKGQAGEKGRSGMPGG 1384
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAG---------PQGEAGPQGPAGKDGEAGAKGP 187
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1385 PGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDMVNYDDIKRfirqeiiklfdermayytsRMQFPMEVAA 1464
Cdd:NF038329 188 AGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGEDGPAGPAGDGQQGPD-------------------GDPGPTGEDG 248
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:NF038329 249 PQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKDG 302
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
595-855 |
2.61e-08 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 58.50 E-value: 2.61e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 595 PGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAkgepcepctalselqdgdmrvvhlPGPAGEKGEPGSPG 674
Cdd:COG5164 6 PGKTGPSDPGGVTTPAGSQGSTKPAQNQGSTRPAGNTGGTRP------------------------AQNQGSTTPAGNTG 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 675 FGLP-GKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGdgctacpslqGALTDVSGLPGKP 753
Cdd:COG5164 62 GTRPaGNQGATGPAQNQGGTTPAQNQGGTRPAGNTGGTTPAGDGGATGPPDDGGATG----------PPDDGGSTTPPSG 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 754 GPKGEPGPEGVGHPGkPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQG 833
Cdd:COG5164 132 GSTTPPGDGGSTPPG-PGSTGPGGSTTPPGDGGSTTPPGPGGSTTPPDDGGSTTPPNKGETGTDIPTGGTPRQGPDGPVK 210
|
250 260
....*....|....*....|..
gi 568928171 834 SPGPKGAIGPmgPPGAGVSGPP 855
Cdd:COG5164 211 KDDKNGKGNP--PDDRGGKTGP 230
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
762-1137 |
7.65e-08 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 56.84 E-value: 7.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 762 EGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPG-TGAEGPQGEPGTQGLPGtqglpgprgppgSAGEKGAQGSPGPKGA 840
Cdd:NF038329 108 EGLQQLKGDGEKGEPGPAGPAGPAGEQGPRGDRGeTGPAGPAGPPGPQGERG------------EKGPAGPQGEAGPQGP 175
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 841 IGPMGPPGAgvSGPPGQKGSRGEKGEPGEcscpsRGEPIFSGMPGAPGLwmgsssqpgpqgppgvpgppgppgmpglqgv 920
Cdd:NF038329 176 AGKDGEAGA--KGPAGEKGPQGPRGETGP-----AGEQGPAGPAGPDGE------------------------------- 217
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 921 PGHNGLPGQPGLTaelgslpiekhllksicGDCAQGQTAHPAfllEKGEKGDQGIPGVPGFDncarcfiererpraeear 1000
Cdd:NF038329 218 AGPAGEDGPAGPA-----------------GDGQQGPDGDPG---PTGEDGPQGPDGPAGKD------------------ 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1001 gdnsegepgcsgspglpgppgmpgqrgeegppgmrgspgppgpigppgfpgavGSPGLPGLQGERGLTGLTGDKGEPGPP 1080
Cdd:NF038329 260 -----------------------------------------------------GPRGDRGEAGPDGPDGKDGERGPVGPA 286
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 568928171 1081 GQPGYPGAMGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQ 1137
Cdd:NF038329 287 GKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDGQPGKPAPK 343
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
331-541 |
2.55e-07 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 54.91 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 331 GPSGLKGGKGERGLTGPSGPKGEKGARGNDCVRVSPDAplqcvEGPKGEKGESGDLGPPGLPGPTGQKGQKGEKGDGGLK 410
Cdd:NF038329 147 GPAGPPGPQGERGEKGPAGPQGEAGPQGPAGKDGEAGA-----KGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPA 221
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 411 GLPGKPGRDGRP--GEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPPGIGLPGTPGDPGGPPGPKGEKGSSGIPGKE 488
Cdd:NF038329 222 GEDGPAGPAGDGqqGPDGDPGPTGEDGPQGPDGPAGKDGPRGDRGEAGPDGPDGKDGERGPVGPAGKDGQNGKDGLPGKD 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 489 GPGGKPGKPGVPGTKGEKGDPCEvcptlpegsqnfVGLPGKPGPKGEPGDPAP 541
Cdd:NF038329 302 GKDGQNGKDGLPGKDGKDGQPGK------------DGLPGKDGKDGQPGKPAP 342
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1089-1142 |
4.23e-06 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 45.56 E-value: 4.23e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 1089 MGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGE 1142
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
1369-1547 |
4.89e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 47.59 E-value: 4.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1369 QKGQAGEKGRSGMPGGPGKSGSMGPIGPPGPAGERGHPGSPGPAGNPGLPGLPGSMGDmvnyddikrfirqeiiklfder 1448
Cdd:NF038329 112 QLKGDGEKGEPGPAGPAGPAGEQGPRGDRGETGPAGPAGPPGPQGERGEKGPAGPQGE---------------------- 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 1449 mayytsrmqfpmevaaaPGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG-VGIAGENGL 1527
Cdd:NF038329 170 -----------------AGPQGPAGKDGEAGAKGPAGEKGPQGPRGETGPAGEQGPAGPAGPDGEAGPAGeDGPAGPAGD 232
|
170 180
....*....|....*....|
gi 568928171 1528 PGPPGPQGPPGYGKMGATGP 1547
Cdd:NF038329 233 GQQGPDGDPGPTGEDGPQGP 252
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
644-867 |
4.91e-05 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 48.06 E-value: 4.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 644 CTALSELQDGDMRVVHLPGPAgekgePGSPGFGLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPA 723
Cdd:PRK07764 571 VTALAEELGGDWQVEAVVGPA-----PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAP 645
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 724 GPKGEKGDGctACPSLQGALTDVSGLPGKPGPKGEPGPEGVGHPGKPGQPGlPGVQGPPGPKGTQGEPGPPGTGAEGPQG 803
Cdd:PRK07764 646 GVAAPEHHP--KHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPA-GAAPAQPAPAPAATPPAGQADDPAAQPP 722
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568928171 804 EPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGAiGPMGPPGAGVSGPPGQKGSRGEKGEP 867
Cdd:PRK07764 723 QAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPP-PPPAPAPAAAPAAAPPPSPPSEEEEM 785
|
|
| gly_rich_SclB |
NF038329 |
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like ... |
827-1144 |
9.41e-05 |
|
LPXTG-anchored collagen-like adhesin Scl2/SclB; SclB (or Scl2 - streptococcal collagen-like protein 2) is an LPXTG-anchored surface-anchored adhesin with a variable-length region of triple helix-forming collagen-like Gly-Xaa-Xaa repeats.
Pssm-ID: 468478 [Multi-domain] Cd Length: 440 Bit Score: 46.82 E-value: 9.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 827 GEKGAQGSPGPKGAIGPMGPPG-AGVSGPPGQKGSRGEKGEPGEcscpsrgepifsgmPGAPGlwmgsssqpgPQGPPGV 905
Cdd:NF038329 117 GEKGEPGPAGPAGPAGEQGPRGdRGETGPAGPAGPPGPQGERGE--------------KGPAG----------PQGEAGP 172
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 906 PGPPGPPGMPGLQGVPGHNGLPGQPGltaelgslpiekhllksicgdcaqgqtahpafllEKGEKGDQGIPGVPGFDNCA 985
Cdd:NF038329 173 QGPAGKDGEAGAKGPAGEKGPQGPRG----------------------------------ETGPAGEQGPAGPAGPDGEA 218
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 986 RCFIERERPRAEEARGDNSEGEPGcsgspglpgppgmpgqrgeegppgmrgspgppgpigPPGFPGAVGSPGLPGLQGER 1065
Cdd:NF038329 219 GPAGEDGPAGPAGDGQQGPDGDPG------------------------------------PTGEDGPQGPDGPAGKDGPR 262
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 1066 GLTGLTGDKGEPGPPGQPgypgamGPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGERGPQGSSGEKG 1144
Cdd:NF038329 263 GDRGEAGPDGPDGKDGER------GPVGPAGKDGQNGKDGLPGKDGKDGQNGKDGLPGKDGKDGQPGKDGLPGKDGKDG 335
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
751-869 |
3.12e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 45.36 E-value: 3.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 751 GKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKG 830
Cdd:PRK07764 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGW 669
|
90 100 110
....*....|....*....|....*....|....*....
gi 568928171 831 AQGSPGPKGAIGPMGPPGAGVSGPPGQKGSRGEKGEPGE 869
Cdd:PRK07764 670 PAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT 708
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1466-1518 |
3.19e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 40.17 E-value: 3.19e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 1466 PGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKGDIG 1518
Cdd:pfam01391 3 PGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
754-812 |
4.87e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.78 E-value: 4.87e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 754 GPKGEPGPegvghPGKPGQPGLPGVQGPPGPKGTQGEPGPPG-TGAEGPQGEPGTQGLPG 812
Cdd:pfam01391 1 GPPGPPGP-----PGPPGPPGPPGPPGPPGPPGPPGEPGPPGpPGPPGPPGPPGAPGAPG 55
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
595-805 |
4.89e-04 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 44.98 E-value: 4.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 595 PGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAkGEPCEPCTALSELQdgdmrvvhlPGPAGEKGEPGSPG 674
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAA-AAPAEASAAPAPGV---------AAPEHHPKHVAVPD 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 675 FGLPGkQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPgiRGPAGPKGEKGDGCTACP--------SLQGALTDV 746
Cdd:PRK07764 662 ASDGG-DGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAP--APAATPPAGQADDPAAQPpqaaqgasAPSPAADDP 738
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 747 SGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEP 805
Cdd:PRK07764 739 VPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDED 797
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1465-1515 |
6.47e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.40 E-value: 6.47e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|.
gi 568928171 1465 APGRPGPPGKDGAPGRPGAPGSPGLPGQIGREGRQGLPGMRGLPGTKGEKG 1515
Cdd:pfam01391 5 PPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| Med15 |
pfam09606 |
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of ... |
619-869 |
6.67e-04 |
|
ARC105 or Med15 subunit of Mediator complex non-fungal; The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development.
Pssm-ID: 312941 [Multi-domain] Cd Length: 732 Bit Score: 44.23 E-value: 6.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 619 AGVPGSP-GPVGPAGIKGAKGEPCEPCTALSELQDGDMRVvhlPGPAGEKGEPGSPgfglpgkqgKAGERGLKGQKGDAG 697
Cdd:pfam09606 57 AAQQQQPqGGQGNGGMGGGQQGMPDPINALQNLAGQGTRP---QMMGPMGPGPGGP---------MGQQMGGPGTASNLL 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 698 NPGDPGTPGITGQPGISGEPGIRGPAGPKGEKGdgctacPSLQGALTDVSGLPGKPGPKGEPGPEGVghPGKPGQPGLPG 777
Cdd:pfam09606 125 ASLGRPQMPMGGAGFPSQMSRVGRMQPGGQAGG------MMQPSSGQPGSGTPNQMGPNGGPGQGQA--GGMNGGQQGPM 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 778 VQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGA-IGPMGPPGAGVSGPPG 856
Cdd:pfam09606 197 GGQMPPQMGVPGMPGPADAGAQMGQQAQANGGMNPQQMGGAPNQVAMQQQQPQQQGQQSQLGMgINQMQQMPQGVGGGAG 276
|
250
....*....|...
gi 568928171 857 QKGSRGEKGEPGE 869
Cdd:pfam09606 277 QGGPGQPMGPPGQ 289
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
590-643 |
8.70e-04 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 39.01 E-value: 8.70e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 590 GLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEP 643
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAP 54
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
713-888 |
1.12e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 43.82 E-value: 1.12e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 713 ISGEPGIRGPAGPKGEKGDGCtacPSLQGALTDVSGLPGKPGPKGEPGPegvGHPGKPGQPGLPGVQGPPGPKGTQGEPG 792
Cdd:PRK07764 588 VGPAPGAAGGEGPPAPASSGP---PEEAARPAAPAAPAAPAAPAPAGAA---AAPAEASAAPAPGVAAPEHHPKHVAVPD 661
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 793 PPGTGAEGPqGEPGTQGLPGTQGLPGPRGPPGSAGEKGAQGSPGPKGAiGPMGPPGAGVSGPPGQKGSRGEKGEPGECSC 872
Cdd:PRK07764 662 ASDGGDGWP-AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAAT-PPAGQADDPAAQPPQAAQGASAPSPAADDPV 739
|
170
....*....|....*.
gi 568928171 873 PSRGEPIFSGMPGAPG 888
Cdd:PRK07764 740 PLPPEPDDPPDPAGAP 755
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
584-640 |
1.17e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.63 E-value: 1.17e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 568928171 584 GPSPGHGLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEP 640
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
590-643 |
1.30e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 1.30e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 568928171 590 GLPGLPGTSGIPGPRGLKGEKGSFGDTGPAGVPGSPGPVGPAGIKGAKGEPCEP 643
Cdd:pfam01391 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
660-717 |
1.39e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 1.39e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*...
gi 568928171 660 LPGPAGEKGEPGSPGFglPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEP 717
Cdd:pfam01391 2 PPGPPGPPGPPGPPGP--PGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
682-730 |
1.41e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 1.41e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 568928171 682 GKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKG 730
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPG 49
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
676-730 |
1.60e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 38.24 E-value: 1.60e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 568928171 676 GLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGEKG 730
Cdd:pfam01391 1 GPPGPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPG 55
|
|
| SPT5 |
COG5164 |
Transcription elongation factor SPT5 [Transcription]; |
750-930 |
2.03e-03 |
|
Transcription elongation factor SPT5 [Transcription];
Pssm-ID: 444063 [Multi-domain] Cd Length: 495 Bit Score: 42.71 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 750 PGKPGPKGEPGPEGVGHP-GKPGQPGLPGVQGPPGPKGTQGEPGPPGT-GAEGPQGEPGTQGLPGTQGLPGPRGPPGSAG 827
Cdd:COG5164 3 LYGPGKTGPSDPGGVTTPaGSQGSTKPAQNQGSTRPAGNTGGTRPAQNqGSTTPAGNTGGTRPAGNQGATGPAQNQGGTT 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 828 EKGAQGSPGPKGAIGPMGPPGAGVS-GPPGQKGSRGEKGEPGECSCPSRGEPIFSGMPGAPGLWMGSSSQPGPQGPPGVP 906
Cdd:COG5164 83 PAQNQGGTRPAGNTGGTTPAGDGGAtGPPDDGGATGPPDDGGSTTPPSGGSTTPPGDGGSTPPGPGSTGPGGSTTPPGDG 162
|
170 180
....*....|....*....|....
gi 568928171 907 GPPGPPGMPGLQGVPGHNGLPGQP 930
Cdd:COG5164 163 GSTTPPGPGGSTTPPDDGGSTTPP 186
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
676-728 |
3.01e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.47 E-value: 3.01e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 568928171 676 GLPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPAGPKGE 728
Cdd:pfam01391 4 GPPGPPGPPGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGP 56
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
1090-1134 |
3.49e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.09 E-value: 3.49e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 568928171 1090 GPPGLPGIKGERGYTGPSGEKGESGPPGSEGLPGPQGPAGPRGER 1134
Cdd:pfam01391 13 GPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| Collagen |
pfam01391 |
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen ... |
665-723 |
3.81e-03 |
|
Collagen triple helix repeat (20 copies); Members of this family belong to the collagen superfamily. Collagens are generally extracellular structural proteins involved in formation of connective tissue structure. The alignment contains 20 copies of the G-X-Y repeat that forms a triple helix. The first position of the repeat is glycine, the second and third positions can be any residue but are frequently proline and hydroxy-proline. Collagens are post translationally modified by proline hydroxylase to form the hydroxy-proline residues. Defective hydroxylation is the cause of scurvy. Some members of the collagen superfamily are not involved in connective tissue structure but share the same triple helical structure. The family includes bacterial collagen-like triple-helix repeat proteins.
Pssm-ID: 460189 [Multi-domain] Cd Length: 57 Bit Score: 37.09 E-value: 3.81e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 568928171 665 GEKGEPGSPGFglPGKQGKAGERGLKGQKGDAGNPGDPGTPGITGQPGISGEPGIRGPA 723
Cdd:pfam01391 1 GPPGPPGPPGP--PGPPGPPGPPGPPGPPGPPGEPGPPGPPGPPGPPGPPGAPGAPGPP 57
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
584-878 |
4.01e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 584 GPSPGHGLPGLPGTSGIPGPrglkgekgsfgdtGPAGVPGSPGP-VGPAGIKGAKGEPCEPCTAlselqDGDMRVVHLPG 662
Cdd:PHA03307 98 ASPAREGSPTPPGPSSPDPP-------------PPTPPPASPPPsPAPDLSEMLRPVGSPGPPP-----AASPPAAGASP 159
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 663 PAGEKGEPGSPGFGLPGKQGKAGERGL-------KGQKGDAGNPGDPGTPGITGQPGiSGEPGIRGPAGPKGEKGDGCTA 735
Cdd:PHA03307 160 AAVASDAASSRQAALPLSSPEETARAPssppaepPPSTPPAAASPRPPRRSSPISAS-ASSPAPAPGRSAADDAGASSSD 238
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 736 CPSLQGALTDVSG-------------LPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQ 802
Cdd:PHA03307 239 SSSSESSGCGWGPenecplprpapitLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSS 318
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568928171 803 GEPGTQGLPGTqglpgprgPPGSAGEKGAQGSPGPKGAIGPMGPPGAGVS-GPPGQKGSRGEKGEPGECSCPSRGEP 878
Cdd:PHA03307 319 SSSRESSSSST--------SSSSESSRGAAVSPGPSPSRSPSPSRPPPPAdPSSPRKRPRPSRAPSSPAASAGRPTR 387
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
747-930 |
5.38e-03 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 41.51 E-value: 5.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 747 SGLPGKPGPKGEPGPEGVGHPGKPGQPGLPGVQGPPGPKGTQGEPGPPGTGAEGPQGEPGTQGLPGTQGLPGPRGPPGSA 826
Cdd:PRK07764 592 PGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPA 671
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568928171 827 GEKGAQGSPGPKGAIGPMGPPGAGVSGPPGQkgSRGEKGEPGECSCPSRGEPIFSGMPGAPGLWMGSSSQPGPQGPPGVP 906
Cdd:PRK07764 672 KAGGAAPAAPPPAPAPAAPAAPAGAAPAQPA--PAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749
|
170 180
....*....|....*....|....
gi 568928171 907 GPPGPPGMPGLQGVPGHNGLPGQP 930
Cdd:PRK07764 750 DPAGAPAQPPPPPAPAPAAAPAAA 773
|
|
| |
