|
Name |
Accession |
Description |
Interval |
E-value |
| PACT_coil_coil |
pfam10495 |
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil ... |
1785-1863 |
3.25e-27 |
|
Pericentrin-AKAP-450 domain of centrosomal targeting protein; This domain is a coiled-coil region close to the C-terminus of centrosomal proteins that is directly responsible for recruiting AKAP-450 and pericentrin to the centrosome. Hence the suggested name for this region is a PACT domain (pericentrin-AKAP-450 centrosomal targeting). This domain is also present at the C-terminus of coiled-coil proteins from Drosophila and S. pombe, and that from the Drosophila protein is sufficient for targeting to the centrosome in mammalian cells. The function of these proteins is unknown but they seem good candidates for having a centrosomal or spindle pole body location. The final 22 residues of this domain in AKAP-450 appear specifically to be a calmodulin-binding domain indicating that this member at least is likely to contribute to centrosome assembly.
Pssm-ID: 463115 Cd Length: 77 Bit Score: 106.52 E-value: 3.25e-27
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568966951 1785 YLRAESFRKALIYQKKYLLLLIGGFQDSEQETLSMIAHLGVFPSKADKKitmSRPFTKFRTAVRVVIAVLRLRFLVKKW 1863
Cdd:pfam10495 2 LLREESFRKDLAYQKKYLLLLLGGYQACNKADLRLLAQMGVTPPDDRPS---RKPRRKLKSAALAVIAIARMKRLAREW 77
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
169-745 |
3.85e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.99 E-value: 3.85e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 169 KQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKS 248
Cdd:COG1196 226 EAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 249 VLWNQKETLTNEAKEREAALQEEVESLTRVQwESRKQSEKDRATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQL 328
Cdd:COG1196 306 RLEERRRELEERLEELEEELAELEEELEELE-EELEELEEELEEAEEELEEAEAELAEAE------EALLEAEAELAEAE 378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 329 AALDKHLRSQRQFMDDQAAerehereeFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEKLREKLDGFNELV 408
Cdd:COG1196 379 EELEELAEELLEALRAAAE--------LAAQLEELEEAEEALLE---------RLERLEEELEELEEALAELEEEEEEEE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 409 IKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD--LLLTTVSRSGLDEAGCP 486
Cdd:COG1196 442 EALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADyeGFLEGVKAALLLAGLRG 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 487 MLPQGSSSRGPEAQPDVTERALLqhENEVVHRRNSEIDELKSLIENLQEN-------------QRQLQKDKAEEIEQLHE 553
Cdd:COG1196 522 LAGAVAVLIGVEAAYEAALEAAL--AAALQNIVVEDDEVAAAAIEYLKAAkagratflpldkiRARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 554 VIEKLQSELSLMGPKVHEVSDPQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVF--GQLLADQAHGHSQALEALQQ 631
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSagGSLTGGSRRELLAALLEAEA 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 632 RLQDAEEVAARHLAELEHcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAvnkwkvshsleleAILLALAHFR 711
Cdd:COG1196 680 ELEELAERLAEEELELEE-ALLAEEEEERELAEAEEERLEEELEEEALEEQLEAERE-------------ELLEELLEEE 745
|
570 580 590
....*....|....*....|....*....|....
gi 568966951 712 HALEQQTCATPDEPPELRQLRVQCARLSHQLQVL 745
Cdd:COG1196 746 ELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
122-693 |
1.54e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 1.54e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLALELHTA 194
Cdd:COG1196 249 EELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLeqdiarlEERRRELEERLEELEEELAEL 328
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 195 KGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVES 274
Cdd:COG1196 329 EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEA 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 275 LtrvqwesrKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaEREHERE 354
Cdd:COG1196 409 E--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLA-------ELLEEAA 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 355 EFQQEIQRLEGQLRQAArprppgprdsqcvqldeEVELLQEKLREKLDGFNELVIKKDFADQQ--------LLIQEEEIK 426
Cdd:COG1196 474 LLEAALAELLEELAEAA-----------------ARLLLLLEAEADYEGFLEGVKAALLLAGLrglagavaVLIGVEAAY 536
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 427 RLEETNASIQRQMVQLQEELEKQKKSMEELKEKeilkqenmgdlLLTTVSRSGLDEAgcpmlpQGSSSRGPEAQPDVTER 506
Cdd:COG1196 537 EAALEAALAAALQNIVVEDDEVAAAAIEYLKAA-----------KAGRATFLPLDKI------RARAALAAALARGAIGA 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 507 ALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGPkvhevsdpqagslhselac 586
Cdd:COG1196 600 AVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGG------------------- 660
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 587 lRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQ 666
Cdd:COG1196 661 -SLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
570 580
....*....|....*....|....*..
gi 568966951 667 EFAATLKAKEAIIEQRDLEIDAVNKWK 693
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELE 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
122-567 |
2.62e-12 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 72.28 E-value: 2.62e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGF 201
Cdd:COG1196 333 EELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 202 KVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWE 281
Cdd:COG1196 413 LERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAAR 492
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 282 SRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQ 361
Cdd:COG1196 493 LLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAG 572
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 362 RLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLRE-----KLDGFNELVIKKDFAD------------QQLLIQEEE 424
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREadaryYVLGDTLLGRTLVAARleaalrravtlaGRLREVTLE 652
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 425 IKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAgcpmlpqgsssrgpEAQPDVT 504
Cdd:COG1196 653 GEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAE--------------AEEERLE 718
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 505 ERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELSLMGP 567
Cdd:COG1196 719 EELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGP 781
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
152-458 |
2.00e-11 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 69.71 E-value: 2.00e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 152 VEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQlilELEDLRK 231
Cdd:TIGR02169 668 FSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKE---RLEELEE 744
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 232 QLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQS----EKDRATLLSQMRVLESELEDQ 307
Cdd:TIGR02169 745 DLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAElsklEEEVSRIEARLREIEQKLNRL 824
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 308 lvqHRGCAQLAEEVATLKQQLAALDkhlrSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAarprppgprDSQCVQLD 387
Cdd:TIGR02169 825 ---TLEKEYLEKEIQELQEQRIDLK----EQIKSIEKEIENLNGKKEELEEELEELEAALRDL---------ESRLGDLK 888
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568966951 388 EEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE------LEKQKKSMEELKE 458
Cdd:TIGR02169 889 KERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIpeeelsLEDVQAELQRVEE 965
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
140-780 |
2.18e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 69.32 E-value: 2.18e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:TIGR02168 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 220 QQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNE---AKEREAALQEEVESLTRVQWESRKQ--------SEK 288
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARlerLEDRRERLQQEIEELLKKLEEAELKelqaeleeLEE 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 289 DRATLLSQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQR--LEGQ 366
Cdd:TIGR02168 448 ELEELQEELERLEEALEELREELE---EAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLsgILGV 524
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 367 LRQAARPRP----------PGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 436
Cdd:TIGR02168 525 LSELISVDEgyeaaieaalGGRLQAVVVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVA 604
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 437 RQMVQLQEELEKQKKSM-------EELKEK-EILKQENMGDLLLT----TVSRSG-------------------LDEAGC 485
Cdd:TIGR02168 605 KDLVKFDPKLRKALSYLlggvlvvDDLDNAlELAKKLRPGYRIVTldgdLVRPGGvitggsaktnssilerrreIEELEE 684
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 486 PMLPQGSSSRGPEAQPDVTERALLQHENEV-------------VHRRNSEIDELKSLIENLQENQRQLQK---DKAEEIE 549
Cdd:TIGR02168 685 KIEELEEKIAELEKALAELRKELEELEEELeqlrkeleelsrqISALRKDLARLEAEVEQLEERIAQLSKeltELEAEIE 764
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 550 QLHEVIEKLQSELSLMGPKVHEVSDPQAG-------------SLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLA 616
Cdd:TIGR02168 765 ELEERLEEAEEELAEAEAEIEELEAQIEQlkeelkalrealdELRAELTLLNEEAANLRERLESLERRIAATERRLEDLE 844
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 617 DQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMA---SQIQEFAATLKAKEAIIEQRDLEIDAVNKWK 693
Cdd:TIGR02168 845 EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALAllrSELEELSEELRELESKRSELRRELEELREKL 924
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 694 VSHSLELEAILLALAHFRHALEQQTCATPDEPPELRQLRVQCARlshqlqvlyrpflKCRMQLDQHQPHVASIGCANPCA 773
Cdd:TIGR02168 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEE-------------EARRRLKRLENKIKELGPVNLAA 991
|
....*..
gi 568966951 774 DDELEQE 780
Cdd:TIGR02168 992 IEEYEEL 998
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
121-682 |
3.62e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.93 E-value: 3.62e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 121 YQSLSTAVEGL-LEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRlalELHTAKGLLE 199
Cdd:TIGR02168 215 YKELKAELRELeLALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE---EIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 200 GFKVEKVDLQEALGKKEESEQQLI-------LELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEV 272
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLErqleeleAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 273 ESLT--RVQWESRK----QSEKDRATLLSQMRVLESELEdQLVQHRgcAQLAEEVATLKQQLAALDKH-LRSQRQFMDDQ 345
Cdd:TIGR02168 372 SRLEelEEQLETLRskvaQLELQIASLNNEIERLEARLE-RLEDRR--ERLQQEIEELLKKLEEAELKeLQAELEELEEE 448
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 346 AAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQcvQLDEEVELLqEKLREKLDGFNELVI-----KKDFAD----- 415
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELA--QLQARLDSL-ERLQENLEGFSEGVKallknQSGLSGilgvl 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 416 QQLLIQEEEIKRLEETNASIQRQMVqLQEELEKQKKSMEELKEKEILKqenMGDLLLTTVSRSGLDEAGCPMLPQGSSSR 495
Cdd:TIGR02168 526 SELISVDEGYEAAIEAALGGRLQAV-VVENLNAAKKAIAFLKQNELGR---VTFLPLDSIKGTEIQGNDREILKNIEGFL 601
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 496 G---------PEAQPDVTerALLQH--------------------------ENEVVHR-----------------RNSEI 523
Cdd:TIGR02168 602 GvakdlvkfdPKLRKALS--YLLGGvlvvddldnalelakklrpgyrivtlDGDLVRPggvitggsaktnssileRRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 524 DELKSLIENLQENQRQLQK---DKAEEIEQLHEVIEKLQSELSLMGPKVHEvsdpqagsLHSELACLRGEGLGGQALRSE 600
Cdd:TIGR02168 680 EELEEKIEELEEKIAELEKalaELRKELEELEEELEQLRKELEELSRQISA--------LRKDLARLEAEVEQLEERIAQ 751
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 601 LQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEhcvALREA--EVEAMASQIQEFAATLKAKEAI 678
Cdd:TIGR02168 752 LSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK---ALREAldELRAELTLLNEEAANLRERLES 828
|
....
gi 568966951 679 IEQR 682
Cdd:TIGR02168 829 LERR 832
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
207-561 |
5.20e-11 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.16 E-value: 5.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 207 DLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEksvlWNQKETLTNEAKEREAALQEEVESLT-RVQWESRKQ 285
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKE----LEELSRQISALRKDLARLEAEVEQLEeRIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 286 SEKD-----RATLLSQMRVLESELEDQLVQHRG-CAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHER---EEF 356
Cdd:TIGR02168 757 TELEaeieeLEERLEEAEEELAEAEAEIEELEAqIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLErriAAT 836
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 357 QQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ 436
Cdd:TIGR02168 837 ERRLEDLEEQIEELS---------EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELE 907
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 437 RQMVQLQEELEKQKKSMEELKEKEIlKQENMGDLLLTTVSRSGLDEAGcpmlPQGSSSRGPEAQPDVTERALLQHENEVV 516
Cdd:TIGR02168 908 SKRSELRRELEELREKLAQLELRLE-GLEVRIDNLQERLSEEYSLTLE----EAEALENKIEDDEEEARRRLKRLENKIK 982
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568966951 517 HRRN---SEIDELKSLIENLQENQRQlQKDKAEEIEQLHEVIEKLQSE 561
Cdd:TIGR02168 983 ELGPvnlAAIEEYEELKERYDFLTAQ-KEDLTEAKETLEEAIEEIDRE 1029
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1286-1593 |
9.09e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 67.27 E-value: 9.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1286 RRQVELLAYKVEqekcianELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAV 1365
Cdd:COG1196 224 ELEAELLLLKLR-------ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1366 LDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKL------SLEKQLAQNNQLCVALKHERAA 1439
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEaeeeleEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1440 KDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQhERLLTEQLSRNSQEACARQETQVQHALLRKL 1519
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1520 KAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELE------IQRQRDEHKIEQLQRLVRELRWKEEV 1593
Cdd:COG1196 456 EEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYegflegVKAALLLAGLRGLAGAVAVLIGVEAA 535
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
168-563 |
1.65e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 1.65e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 168 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL-ELEDLRKQLQQAARELLTLKEE 246
Cdd:TIGR02169 173 EKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLkEKEALERQKEAIERQLASLEEE 252
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 247 KsvlwnqkETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVATLKQ 326
Cdd:TIGR02169 253 L-------EKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIA----------SLERSIAEKER 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 327 QLaaldkhlrsqrQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRppgprdsqcVQLDEEVELLQEKLREKldgfne 406
Cdd:TIGR02169 316 EL-----------EDAEERLAKLEAEIDKLLAEIEELEREIEEERKRR---------DKLTEEYAELKEELEDL------ 369
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 407 lvikkdfadqqlliqEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQEnmgdlllttvsrsgldeagcp 486
Cdd:TIGR02169 370 ---------------RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE--------------------- 413
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 487 mLPQGSSSRGPEAQPDVTerALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQK------DKAEEIEQLHEVIEKLQS 560
Cdd:TIGR02169 414 -ELQRLSEELADLNAAIA--GIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKyeqelyDLKEEYDRVEKELSKLQR 490
|
...
gi 568966951 561 ELS 563
Cdd:TIGR02169 491 ELA 493
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
214-637 |
3.23e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 3.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 214 KKEESEQQLILELEDLrKQLQQAARELltlkeEKsvlwnQKETLTNEAK--EREAALQEEVESLTRVQWESRKQSEKDRa 291
Cdd:TIGR02168 173 RRKETERKLERTRENL-DRLEDILNEL-----ER-----QLKSLERQAEkaERYKELKAELRELELALLVLRLEELREE- 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 292 tlLSQMRVLESELEDQlvqhrgCAQLAEEVATLKQQLAALdkhlRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAA 371
Cdd:TIGR02168 241 --LEELQEELKEAEEE------LEELTAELQELEEKLEEL----RLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 372 RprppgpRDSQCVQLDEEVELLQEKLREKLDgfnelvikkdfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKK 451
Cdd:TIGR02168 309 E------RLANLERQLEELEAQLEELESKLD-----------------ELAEELAELEEKLEELKEELESLEAELEELEA 365
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 452 SMEELKEKEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgpeaqpdvtERALLQHENEvVHRRNSEIDELKSLIE 531
Cdd:TIGR02168 366 ELEELESRLEELEEQLETL----------------------------------RSKVAQLELQ-IASLNNEIERLEARLE 410
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 532 NLQENQRQLQKDKAEEIEQLHEV-IEKLQSELslmgpkvhevsdpqaGSLHSELACLRGEGLGGQALRSELQAAQAAKEV 610
Cdd:TIGR02168 411 RLEDRRERLQQEIEELLKKLEEAeLKELQAEL---------------EELEEELEELQEELERLEEALEELREELEEAEQ 475
|
410 420
....*....|....*....|....*..
gi 568966951 611 FGQLLADQAHGHSQALEALQQRLQDAE 637
Cdd:TIGR02168 476 ALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1275-1588 |
7.52e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 7.52e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1275 EARGSQREHQLRRQVE-----LLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHackqentSLL 1349
Cdd:TIGR02168 208 QAEKAERYKELKAELRelelaLLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVS-------ELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1350 ESLDKVQQEVLRLRAVLDGKEKELKVVLEELESergkgqalQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQL 1429
Cdd:TIGR02168 281 EEIEELQKELYALANEISRLEQQKQILRERLAN--------LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1430 CVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALqherlltEQLSRNSQEACARQET 1509
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARL-------ERLEDRRERLQQEIEE 425
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568966951 1510 QVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQErcVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1588
Cdd:TIGR02168 426 LLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREE--LEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
124-458 |
1.76e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 60.07 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 124 LSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKV 203
Cdd:TIGR02168 682 LEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEA 761
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 204 EKVDLQEALGKKE----------ESEQQLIL----ELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQ 269
Cdd:TIGR02168 762 EIEELEERLEEAEeelaeaeaeiEELEAQIEqlkeELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLE 841
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 270 EEVEsltrvQWESRKQSEKDRATLLSQMRVLESELEDQLVqhrgcaQLAEEVATLKQQLAAldkhLRSQRQFMDDQAAER 349
Cdd:TIGR02168 842 DLEE-----QIEELSEDIESLAAEIEELEELIEELESELE------ALLNERASLEEALAL----LRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 350 EHEREEFQQEIQRLEGQLRQAARprppgprdsQCVQLDEEVELLQEKLREK----LDGFNELVIKKDFADQQLliqEEEI 425
Cdd:TIGR02168 907 ESKRSELRRELEELREKLAQLEL---------RLEGLEVRIDNLQERLSEEysltLEEAEALENKIEDDEEEA---RRRL 974
|
330 340 350
....*....|....*....|....*....|...
gi 568966951 426 KRLEETNASIQRQMVQLQEELEKQKKSMEELKE 458
Cdd:TIGR02168 975 KRLENKIKELGPVNLAAIEEYEELKERYDFLTA 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
393-685 |
2.32e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 2.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 393 LQEKLREKLdgFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMgDLLL 472
Cdd:COG1196 218 LKEELKELE--AELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE-YELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 473 TTVSRSGLDEAgcpmlpqgsssrgpeaqpdvTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLH 552
Cdd:COG1196 295 AELARLEQDIA--------------------RLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELE 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 553 EVIEKLQSelslmgpkvhevsdpQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQR 632
Cdd:COG1196 355 EAEAELAE---------------AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL 419
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 568966951 633 LQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLE 685
Cdd:COG1196 420 EEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
139-680 |
4.28e-08 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 58.52 E-value: 4.28e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 139 SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALElhTAKGLLEGFKVEKVDLQEALGKKEES 218
Cdd:TIGR00606 446 KEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTE--TLKKEVKSLQNEKADLDRKLRKLDQE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 219 EQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLT-----------------------NEAKEREAALQEEVESL 275
Cdd:TIGR00606 524 MEQLNHHTTTRTQMEMLTKDKMDKDEQIRKIKSRHSDELTsllgyfpnkkqledwlhskskeiNQTRDRLAKLNKELASL 603
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 276 TRVQWESRKQSEKDRATLLSqmrvleseLEDQLVQHRGC-------AQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAE 348
Cdd:TIGR00606 604 EQNKNHINNELESKEEQLSS--------YEDKLFDVCGSqdeesdlERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDE 675
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 349 RE------HEREEFQQEIQRLEGQLRQAARPRPpgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE 422
Cdd:TIGR00606 676 NQsccpvcQRVFQTEAELQEFISDLQSKLRLAP------------DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKE 743
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 423 EEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPD 502
Cdd:TIGR00606 744 KEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRT 823
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 503 VTE-RALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKD----KAEEI-------------EQLHEVIEKLQSELSL 564
Cdd:TIGR00606 824 VQQvNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKtnelKSEKLqigtnlqrrqqfeEQLVELSTEVQSLIRE 903
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 565 MGPKVHEVSdPQAGSLHSELAclRGEGLGGQALRSELQAAQAAKEVFGQLlaDQAHGHSQALEALQQ-----RLQDAEEV 639
Cdd:TIGR00606 904 IKDAKEQDS-PLETFLEKDQQ--EKEELISSKETSNKKAQDKVNDIKEKV--KNIHGYMKDIENKIQdgkddYLKQKETE 978
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 568966951 640 AARHLAELEHCVALREAEVEAMASQIQEFaATLKAKEAIIE 680
Cdd:TIGR00606 979 LNTVNAQLEECEKHQEKINEDMRLMRQDI-DTQKIQERWLQ 1018
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
132-455 |
5.40e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 58.16 E-value: 5.40e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 132 LEMALDSSKQLEEARQLHRCVEREFRHR----NEEMAQAmQKQQELLERLREesAAKDRLALELHTAKGLLEGFKVEKVD 207
Cdd:TIGR02169 172 KEKALEELEEVEENIERLDLIIDEKRQQlerlRREREKA-ERYQALLKEKRE--YEGYELLKEKEALERQKEAIERQLAS 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 208 LQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK-ETLTNEAKEREAALQEEVESLTRVQwESRKQS 286
Cdd:TIGR02169 249 LEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKiGELEAEIASLERSIAEKERELEDAE-ERLAKL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 287 EKDRATLLSQMRVLESELEDQLVQHRGC----AQLAEEVATLKQQLAALDKHLRSQRQFMDD----------QAAEREHE 352
Cdd:TIGR02169 328 EAEIDKLLAEIEELEREIEEERKRRDKLteeyAELKEELEDLRAELEEVDKEFAETRDELKDyrekleklkrEINELKRE 407
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 353 REEFQQEIQRLEGQLRQAaRPRPPGPRDSQcVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN 432
Cdd:TIGR02169 408 LDRLQEELQRLSEELADL-NAAIAGIEAKI-NELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485
|
330 340
....*....|....*....|...
gi 568966951 433 ASIQRQMvqlqEELEKQKKSMEE 455
Cdd:TIGR02169 486 SKLQREL----AEAEAQARASEE 504
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
140-452 |
1.02e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:TIGR02169 702 NRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEAL 781
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 220 QQliLELEDLRKQLQQAARELLTLKEEKSVL---WNQKETLTNEAKEREAALQEEVESLTRVQ--WESRKQSEKDRATLL 294
Cdd:TIGR02169 782 ND--LEARLSHSRIPEIQAELSKLEEEVSRIearLREIEQKLNRLTLEKEYLEKEIQELQEQRidLKEQIKSIEKEIENL 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 295 -SQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRSQRQFMDD---QAAEREHEREEFQQEIQRLEGQLRQA 370
Cdd:TIGR02169 860 nGKKEELEEELEELEAALR---DLESRLGDLKKERDELEAQLRELERKIEEleaQIEKKRKRLSELKAKLEALEEELSEI 936
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 371 ARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIKkdfADQQLLIQEEEIKRLEETNASIQRQMVQLQ---EELE 447
Cdd:TIGR02169 937 EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNML---AIQEYEEVLKRLDELKEKRAKLEEERKAILeriEEYE 1013
|
....*
gi 568966951 448 KQKKS 452
Cdd:TIGR02169 1014 KKKRE 1018
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1244-1503 |
1.29e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.99 E-value: 1.29e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1244 AEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQRE------HQLRRQVELLAYKVEQEKCIANELQKTLSKEQETA 1317
Cdd:TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRKELEELEEELEqlrkelEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1318 SDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKvvleELESERGKgqalqaqQEEQ 1397
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELT----LLNEEAAN-------LRER 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1398 QLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQI---EASRCEALLAQEKGQLSELQKSLEA 1474
Cdd:TIGR02168 826 LESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnERASLEEALALLRSELEELSEELRE 905
|
250 260
....*....|....*....|....*....
gi 568966951 1475 ERSRSLELSEALQHERLLTEQLSRNSQEA 1503
Cdd:TIGR02168 906 LESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
133-366 |
2.28e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 56.08 E-value: 2.28e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 133 EMALDSSKQLEEARQLhrcVErEFR--HRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKvdLQE 210
Cdd:COG4913 215 EYMLEEPDTFEAADAL---VE-HFDdlERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALRLWF--AQR 288
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 211 ALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLwnqKETLTNEAKEREAALQEEVESLTRvqweSRKQSEKDR 290
Cdd:COG4913 289 RLELLEAELEELRAELARLEAELERLEARLDALREELDEL---EAQIRGNGGDRLEQLEREIERLER----ELEERERRR 361
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568966951 291 ATLLSQMRVLESEL---EDQLVQHRgcAQLAEEVATLKQQLAALDKHLRSQRqfmdDQAAEREHEREEFQQEIQRLEGQ 366
Cdd:COG4913 362 ARLEALLAALGLPLpasAEEFAALR--AEAAALLEALEEELEALEEALAEAE----AALRDLRRELRELEAEIASLERR 434
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
1267-1506 |
3.16e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.77 E-value: 3.16e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1267 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEkcianELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT 1346
Cdd:COG4942 5 LLLALLLALAAAAQADAAAEAEAELEQLQQEIA-----ELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1347 SLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQAL---QAQQEEQQLRYLQREGQSSRALEELKLSLEKQL 1423
Cdd:COG4942 80 ALEAELAELEKEIAELRAELEAQKEELAELLRALYRLGRQPPLAlllSPEDFLDAVRRLQYLKYLAPARREQAEELRADL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1424 AQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEA 1503
Cdd:COG4942 160 AELAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAA 239
|
...
gi 568966951 1504 CAR 1506
Cdd:COG4942 240 AER 242
|
|
| HCR |
pfam07111 |
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha ... |
1238-1588 |
3.64e-07 |
|
Alpha helical coiled-coil rod protein (HCR); This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation.
Pssm-ID: 284517 [Multi-domain] Cd Length: 749 Bit Score: 55.53 E-value: 3.64e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1238 DRSSLLAEIQALRAQLR-MTHLQ--NQEKLQQLCAALTSTEAR---------GSQREHQLRRQVELLAYKVEQEKCIaNE 1305
Cdd:pfam07111 257 DRADLQATVELLQVRVQsLTHMLalQEEELTRKIQPSDSLEPEfpkkcrsllNRWREKVFALMVQLKAQDLEHRDSV-KQ 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1306 LQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERG 1385
Cdd:pfam07111 336 LRGQVAELQEQVTSQSQEQAILQRALQDKAAEVEVERMSAKGLQMELSRAQEARRRQQQQTASAEEQLKFVVNAMSSTQI 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1386 KGQALQAQQEEQQLR---------YLQREGQSSRALEELKLSLEKQLAQ-----------NNQLCVALKHERAAKDNLQK 1445
Cdd:pfam07111 416 WLETTMTRVEQAVARipslsnrlsYAVRKVHTIKGLMARKVALAQLRQEscpppppappvDADLSLELEQLREERNRLDA 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1446 ELQIEAS--RCEALLAQEKG-----QLSELQKSLEAERSRS--------LELSEALQHERLLTEQLSRNSQEACARQETQ 1510
Cdd:pfam07111 496 ELQLSAHliQQEVGRAREQGeaerqQLSEVAQQLEQELQRAqeslasvgQQLEVARQGQQESTEEAASLRQELTQQQEIY 575
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568966951 1511 VQhALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1588
Cdd:pfam07111 576 GQ-ALQEKVAEVETRLREQLSDTKRRLNEARREQAKAVVSLRQIQHRATQEKERNQELRRLQDEARKEEGQRLARRVQ 652
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1259-1578 |
4.81e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.53 E-value: 4.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1259 QNQEKLQQLCAALTSTEARGSQREHQLRRQVELlayKVEQEKCIANELQKT--LSKEQETASDVRKRLVVEQNAVQDLKS 1336
Cdd:PTZ00121 1507 EAKKKADEAKKAEEAKKADEAKKAEEAKKADEA---KKAEEKKKADELKKAeeLKKAEEKKKAEEAKKAEEDKNMALRKA 1583
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1337 ELhaCKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESErgkgqalqAQQEEQQLRYLQREGQSSRALEELK 1416
Cdd:PTZ00121 1584 EE--AKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKA--------EEEKKKVEQLKKKEAEEKKKAEELK 1653
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1417 LSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALL--AQEKGQLSELQKSLEAERSRSLELSEALQHERLLTE 1494
Cdd:PTZ00121 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkeAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAE 1733
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1495 QLSRNSQEacarqetqvqhallRKLKAEKTRALELEAmlEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDE 1574
Cdd:PTZ00121 1734 EAKKEAEE--------------DKKKAEEAKKDEEEK--KKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVD 1797
|
....
gi 568966951 1575 HKIE 1578
Cdd:PTZ00121 1798 KKIK 1801
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1275-1593 |
7.33e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 54.76 E-value: 7.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1275 EARGSQREHQLRRQVELLAYKVEQEKCIANELQKTlSKEQETASDVRKrlVVEQNAVQDLKSELHACKQENTSLLESLDK 1354
Cdd:PTZ00121 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA-AEAKKKADEAKK--AEEAKKADEAKKAEEAKKADEAKKAEEKKK 1547
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1355 VQQevlrLRavldgKEKELKVVLEELESERGKGQALQAQQEEQQLRYLqREGQSSRALEELKLSLEKQLAQNNQLCVA-- 1432
Cdd:PTZ00121 1548 ADE----LK-----KAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEA-KKAEEARIEEVMKLYEEEKKMKAEEAKKAee 1617
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1433 ----------LKHERAAKDNLQKELQIEASRCEALLAQE---KGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRN 1499
Cdd:PTZ00121 1618 akikaeelkkAEEEKKKVEQLKKKEAEEKKKAEELKKAEeenKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE 1697
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1500 SQEACARQEtqvqhalLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQR-QRDEHKIE 1578
Cdd:PTZ00121 1698 AEEAKKAEE-------LKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHlKKEEEKKA 1770
|
330
....*....|....*
gi 568966951 1579 QLQRLVRELRWKEEV 1593
Cdd:PTZ00121 1771 EEIRKEKEAVIEEEL 1785
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1153-1593 |
1.62e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.40 E-value: 1.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1153 RDSQALSEVTTDKGEKESLETHL-TWSEELLRAIQEVFAREQEKAELQprpygsnlGDYNSLVQRLEKVIQEQGDPQKVQ 1231
Cdd:COG1196 310 RRRELEERLEELEEELAELEEELeELEEELEELEEELEEAEEELEEAE--------AELAEAEEALLEAEAELAEAEEEL 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1232 DHLcLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLS 1311
Cdd:COG1196 382 EEL-AEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEA 460
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1312 KEQETASDVRKRLVVEQnAVQDLKSELHACKQENTSLLE---------------SLDKVQQEVLRLRAVLDGKEKELKVV 1376
Cdd:COG1196 461 LLELLAELLEEAALLEA-ALAELLEELAEAAARLLLLLEaeadyegflegvkaaLLLAGLRGLAGAVAVLIGVEAAYEAA 539
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1377 LEELESERGK-GQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCE 1455
Cdd:COG1196 540 LEAALAAALQnIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLG 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1456 ALL-------AQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQ-----ETQVQHALLRKLKAEK 1523
Cdd:COG1196 620 DTLlgrtlvaARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEaeleeLAERLAEEELELEEAL 699
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1524 TRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELRWKEEV 1593
Cdd:COG1196 700 LAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELEREL 769
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
118-560 |
1.64e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 1.64e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 118 RRVYQSLSTAVEGLL-EMALDS--SKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTA 194
Cdd:PRK02224 285 RERLEELEEERDDLLaEAGLDDadAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 195 KGLLEGfkvEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVES 274
Cdd:PRK02224 365 AAELES---ELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 275 LTRVQ--WESRK-----QSEKD--RATLLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQ 345
Cdd:PRK02224 442 VEEAEalLEAGKcpecgQPVEGspHVETIEEDRERVEELEAEL------EDLEEEVEEVEERLERAEDLVEAEDRIERLE 515
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 346 AAEREHEREEFQQEiQRLEGQLRQAARPRppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEI 425
Cdd:PRK02224 516 ERREDLEELIAERR-ETIEEKRERAEELR------ERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERI 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 426 KRLeETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDL------LLTTVSRSGLDEAgcpmlpQGSSSRGPEA 499
Cdd:PRK02224 589 ESL-ERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKrerkreLEAEFDEARIEEA------REDKERAEEY 661
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 500 QPDVTE--RALLQHENEVVHRRNSEIDELKSLiENLQENQRQLQkDKAEEIEQLHEVIEKLQS 560
Cdd:PRK02224 662 LEQVEEklDELREERDDLQAEIGAVENELEEL-EELRERREALE-NRVEALEALYDEAEELES 722
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
137-460 |
1.67e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 53.61 E-value: 1.67e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 137 DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQ-KQQELLERLREESAAKDRLALELHTAKgllEGFKVEKVDLQEALGKK 215
Cdd:PTZ00121 1525 DEAKKAEEAKKADEAKKAEEKKKADELKKAEElKKAEEKKKAEEAKKAEEDKNMALRKAE---EAKKAEEARIEEVMKLY 1601
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 216 EESEQqliLELEDLRKQLQQ--AARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSE-KDRAT 292
Cdd:PTZ00121 1602 EEEKK---MKAEEAKKAEEAkiKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEdKKKAE 1678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 293 LLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQ---RQFMDDQAAEREHEREEFQQEIQRLEGQLRQ 369
Cdd:PTZ00121 1679 EAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAeeeNKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 370 AARPRPPGPRDSQCVQLDEEVeLLQEKLREKLDGFNELVIK--KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELE 447
Cdd:PTZ00121 1759 IAHLKKEEEKKAEEIRKEKEA-VIEEELDEEDEKRRMEVDKkiKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVAD 1837
|
330
....*....|...
gi 568966951 448 KQKKSMEELKEKE 460
Cdd:PTZ00121 1838 SKNMQLEEADAFE 1850
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
154-465 |
2.72e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.67 E-value: 2.72e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 154 REFRHRNEEMAQAMQKQQELLERLREesaakdrLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQL 233
Cdd:pfam02463 166 RLKRKKKEALKKLIEETENLAELIID-------LEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEER 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 234 QQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDqlvqhrg 313
Cdd:pfam02463 239 IDLLQELLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVD------- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 314 caqLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEG--QLRQAARPRPPGPRDSQC---VQLDE 388
Cdd:pfam02463 312 ---DEEKLKESEKEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEEleKLQEKLEQLEEELLAKKKlesERLSS 388
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568966951 389 EVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE 465
Cdd:pfam02463 389 AAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1215-1588 |
3.41e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 52.28 E-value: 3.41e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1215 QRLEKVIQEQGDPQKVQDHLCLSDRSSLLAEIQALRAqlrMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAY 1294
Cdd:pfam02463 173 EALKKLIEETENLAELIIDLEELKLQELKLKEQAKKA---LEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDE 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1295 KVEQEKcianeLQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELK 1374
Cdd:pfam02463 250 QEEIES-----SKQEIEKEEEKLAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1375 VVLEELESERGKGQalqaqqeeqqlrylqregQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRC 1454
Cdd:pfam02463 325 KAEKELKKEKEEIE------------------ELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERL 386
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1455 EALLAqEKGQLSELQKSLEAERSRSLELSEALQHERL-LTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEAML 1533
Cdd:pfam02463 387 SSAAK-LKEEELELKSEEEKEAQLLLELARQLEDLLKeEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDEL 465
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568966951 1534 EKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQRLVRELR 1588
Cdd:pfam02463 466 ELKKSEDLLKETQLVKLQEQLELLLSRQKLEERSQKESKARSGLKVLLALIKDGV 520
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-445 |
7.71e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 7.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 226 LEDLRKQLQQAARELLTLKEEKSVLWNQKETLTneakEREAALQEevesLTRVQWEsrkqsEKDRATLLSQMRVLESELE 305
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAELDALQ----ERREALQR----LAEYSWD-----EIDVASAEREIAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 306 DQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQfmddqaaerehEREEFQQEIQRLEGQLRQAARprppgprdsqcvQ 385
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKG-----------EIGRLEKELEQAEEELDELQD------------R 735
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 386 LDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEE 445
Cdd:COG4913 736 LEAAEDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRA 795
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1269-1592 |
8.19e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 8.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1269 AALTSTEARGSQREHQLRRQVELLAYKVEqEKCIANELQKTlSKEQETASDVRKRlvveqnAVQDLKSELHACKQENTSL 1348
Cdd:PTZ00121 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAE-EAKKADEAKKK-AEEAKKAEEAKKK------AEEAKKADEAKKKAEEAKK 1484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1349 LESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQ 1428
Cdd:PTZ00121 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKK 1564
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1429 lcvalKHERAAKDNLQKELQIEasRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLsRNSQEACARQE 1508
Cdd:PTZ00121 1565 -----KAEEAKKAEEDKNMALR--KAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL-KKAEEEKKKVE 1636
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1509 TQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCVELRREKERELEiQRQRDEHKIEQLQRLVRELR 1588
Cdd:PTZ00121 1637 QLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALK-KEAEEAKKAEELKKKEAEEK 1715
|
....
gi 568966951 1589 WKEE 1592
Cdd:PTZ00121 1716 KKAE 1719
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
140-659 |
8.51e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.12 E-value: 8.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREE----------SAAKDRLALELHTAKGLLEGFKVEKVDLQ 209
Cdd:TIGR00618 229 KHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIeelraqeavlEETQERINRARKAAPLAAHIKAVTQIEQQ 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 210 EA-----LGKKEESEQQLILELEDLRKQ---LQQAARELLTL--KEEKSVLWNQKETLTNEAKEREAALQEEVESLTRvQ 279
Cdd:TIGR00618 309 AQrihteLQSKMRSRAKLLMKRAAHVKQqssIEEQRRLLQTLhsQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQ-Q 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 280 WESRKQSEKDRATLLSQMRVL----------ESELEDQLVQHRGCAQLAEEVATLKQQLAA--------LDKHLRSQRQF 341
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREqatidtrtsaFRDLQGQLAHAKKQQELQQRYAELCAAAITctaqceklEKIHLQESAQS 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 342 MDDQAAEREHEREEFQQ--EIQRLEGQ--LRQAARPRP-----------------PGPRDSQCVQLDEEVELLQE----- 395
Cdd:TIGR00618 468 LKEREQQLQTKEQIHLQetRKKAVVLArlLELQEEPCPlcgscihpnparqdidnPGPLTRRMQRGEQTYAQLETseedv 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 396 --KLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ---KKSMEELKEKEILKQENMGDL 470
Cdd:TIGR00618 548 yhQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLseaEDMLACEQHALLRKLQPEQDL 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 471 LLTTVSRSGLDEAGCPMLPQGSSSRGPEAQPDVTERALL--QHENEVVHRRNSEIDELKSLIenlqenqRQLQKDKaEEI 548
Cdd:TIGR00618 628 QDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSirVLPKELLASRQLALQKMQSEK-------EQLTYWK-EML 699
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 549 EQLHEVIEKLQSELSLMGPKVHEVSDpqagSLHSELACLRGEGLGGQALRSELQAAQaaKEVFGQLLADQAHGHSQALEA 628
Cdd:TIGR00618 700 AQCQTLLRELETHIEEYDREFNEIEN----ASSSLGSDLAAREDALNQSLKELMHQA--RTVLKARTEAHFNNNEEVTAA 773
|
570 580 590
....*....|....*....|....*....|....*.
gi 568966951 629 LQ--QRLQDAE---EVAARHLAELEHCVALREAEVE 659
Cdd:TIGR00618 774 LQtgAELSHLAaeiQFFNRLREEDTHLLKTLEAEIG 809
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
153-458 |
1.08e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 50.61 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 153 EREFRHRNEEMAQAMQKQQELLERLREEsaakdrlaleLHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQ 232
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQ----------LVQANGELEKASREETFARTALKNARLDLRRLFDEKQSEKDK 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 233 LQQAarelltLKEEKSVLWNQKETLTNEAKEREAALQEEVEsltrvqwESRKQSEKDRATLLSQMRVLESELEDQLvqhr 312
Cdd:pfam12128 669 KNKA------LAERKDSANERLNSLEAQLKQLDKKHQAWLE-------EQKEQKREARTEKQAYWQVVEGALDAQL---- 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 313 gcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPR--DSQCVQLDEEV 390
Cdd:pfam12128 732 --ALLKAAIAARRSGAKAELKALETWYKRDLASLGVDPDVIAKLKREIRTLERKIERIAVRRQEVLRyfDWYQETWLQRR 809
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568966951 391 ELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKR----LEETNASIQRQMVQLQEELEKQKKSMEELKE 458
Cdd:pfam12128 810 PRLATQLSNIERAISEL-------QQQLARLIADTKLrrakLEMERKASEKQQVRLSENLRGLRCEMSKLAT 874
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-561 |
1.17e-05 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 168 QKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 247
Cdd:TIGR04523 225 KQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQK 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 248 SVLWNQ--KETLTNEAKEREAA-------------LQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEDQLVQHr 312
Cdd:TIGR04523 305 EQDWNKelKSELKNQEKKLEEIqnqisqnnkiisqLNEQISQLKK----ELTNSESENSEKQRELEEKQNEIEKLKKEN- 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 313 gcAQLAEEVATLKQQLAALDKHLRSQR---QFMDDQAAEREHEREEFQQEIQRLEgqlrqaarprppgprdSQCVQLDEE 389
Cdd:TIGR04523 380 --QSYKQEIKNLESQINDLESKIQNQEklnQQKDEQIKKLQQEKELLEKEIERLK----------------ETIIKNNSE 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 390 VELLQEKLREKLDGFNELVIKKDfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGD 469
Cdd:TIGR04523 442 IKDLTNQDSVKELIIKNLDNTRE-------SLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKD 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 470 LLlttvsrsgldeagcpmlPQGSSSRgpeaqpdVTERALlqhENEVVhRRNSEIDELKSLIENLQEN--QRQLQK---DK 544
Cdd:TIGR04523 515 LT-----------------KKISSLK-------EKIEKL---ESEKK-EKESKISDLEDELNKDDFElkKENLEKeidEK 566
|
410
....*....|....*..
gi 568966951 545 AEEIEQLHEVIEKLQSE 561
Cdd:TIGR04523 567 NKEIEELKQTQKSLKKK 583
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
265-676 |
1.90e-05 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.77 E-value: 1.90e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 265 EAALQEEVESLtrvqwesRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALD---KHLRSQRQF 341
Cdd:COG4717 48 LERLEKEADEL-------FKPQGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEaelEELREELEK 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 342 MDD--QAAEREHEREEFQQEIQRLEGQLRQA-ARPRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNeLVIKKDFADQQL 418
Cdd:COG4717 121 LEKllQLLPLYQELEALEAELAELPERLEELeERLEELRELEEELEELEAELAELQEELEELLEQLS-LATEEELQDLAE 199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 419 LIQE--EEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQE---------------NMGDLLLTTVSRSGLD 481
Cdd:COG4717 200 ELEElqQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEArlllliaaallallgLGGSLLSLILTIAGVL 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 482 EAGCPMLPQGSSSRGPEAQPDVTERALLQHENEVVHRRNSEIDELKS---LIENLQENQRQLQKDKAEEIEQLHEVIEKL 558
Cdd:COG4717 280 FLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAalgLPPDLSPEELLELLDRIEELQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 559 QSELSLMGPKVHEVSDPQAGSLHSElaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEE 638
Cdd:COG4717 360 EEELQLEELEQEIAALLAEAGVEDE-----------EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEE 428
|
410 420 430
....*....|....*....|....*....|....*...
gi 568966951 639 VAARHLAELEHCVALREAEVEAMASQIQEFAATLKAKE 676
Cdd:COG4717 429 ELEEELEELEEELEELEEELEELREELAELEAELEQLE 466
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
130-460 |
2.12e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 49.95 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 130 GLLEMALDSSKQLEEARQLhrcvEREFRHRNEEMAQAMQKQQELLERLREE-SAAKDRLALeLHTAKGLLEgfKVEK--- 205
Cdd:COG3096 282 ELSERALELRRELFGARRQ----LAEEQYRLVEMARELEELSARESDLEQDyQAASDHLNL-VQTALRQQE--KIERyqe 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 206 ------VDLQEALGKKEESEQQLI----------LELEDLRKQL---QQAARELLT-----------LKEEKSVLWNQKE 255
Cdd:COG3096 355 dleeltERLEEQEEVVEEAAEQLAeaearleaaeEEVDSLKSQLadyQQALDVQQTraiqyqqavqaLEKARALCGLPDL 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 256 TLTNeAKEREAALQEEVESLTRVQWESRKQ--------SEKDRATLLSQMRVLESELED-------QLVQHRGCAQLAEE 320
Cdd:COG3096 435 TPEN-AEDYLAAFRAKEQQATEEVLELEQKlsvadaarRQFEKAYELVCKIAGEVERSQawqtareLLRRYRSQQALAQR 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 321 VATLKQQLAALDKHLRSqrqfmddqaaerehereefQQEIQRLEGQLRQaarprppgpRDSQCVQLDEEVELLQEKlrek 400
Cdd:COG3096 514 LQQLRAQLAELEQRLRQ-------------------QQNAERLLEEFCQ---------RIGQQLDAAEELEELLAE---- 561
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 401 ldgfnelvikkdfadqqlliQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKE 460
Cdd:COG3096 562 --------------------LEAQLEELEEQAAEAVEQRSELRQQLEQLRARIKELAARA 601
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
229-567 |
2.95e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.95e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 229 LRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWEsRKQSEKDRATLLSQMRVLESELEdql 308
Cdd:TIGR02169 672 EPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE-IEQLEQEEEKLKERLEELEEDLS--- 747
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 309 vqhrgcaQLAEEVATLKQQLAALDKHL-RSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQaarprppgprdsqcvqLD 387
Cdd:TIGR02169 748 -------SLEQEIENVKSELKELEARIeELEEDLHKLEEALNDLEARLSHSRIPEIQAELSK----------------LE 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 388 EEVELLQEKLREKLDGFNELVIKKDFAdqqlliqEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENM 467
Cdd:TIGR02169 805 EEVSRIEARLREIEQKLNRLTLEKEYL-------EKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAAL 877
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 468 GDLlltTVSRSGLDEagcpmlpqgsSSRGPEAQPDVTERAlLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEE 547
Cdd:TIGR02169 878 RDL---ESRLGDLKK----------ERDELEAQLRELERK-IEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGED 943
|
330 340
....*....|....*....|....*....
gi 568966951 548 ---------IEQLHEVIEKLQSELSLMGP 567
Cdd:TIGR02169 944 eeipeeelsLEDVQAELQRVEEEIRALEP 972
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1204-1586 |
3.47e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 3.47e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1204 GSNLGDYNSLVQR--LEKVIQEQGDPQKVQDHL--CLSDRSSLLAEIQALRAQLRMTHLQNQEKLQQLcAALTSTEARGS 1279
Cdd:TIGR02169 658 GSRAPRGGILFSRsePAELQRLRERLEGLKRELssLQSELRRIENRLDELSQELSDASRKIGEIEKEI-EQLEQEEEKLK 736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1280 QREHQLRR-----QVELLAYKVEQEKCIAN--ELQKTLSKEQETASDVRKRLVVEQ-NAVQDLKSELHACKQENTSLLES 1351
Cdd:TIGR02169 737 ERLEELEEdlsslEQEIENVKSELKELEARieELEEDLHKLEEALNDLEARLSHSRiPEIQAELSKLEEEVSRIEARLRE 816
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1352 LDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKgqalqaqqeeqqlryLQREGQSSRA-LEELKLSLEKQLAQNNQLC 1430
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS---------------IEKEIENLNGkKEELEEELEELEAALRDLE 881
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1431 VALKHERAAKDNLQKELQieasrceallAQEKGQlSELQKSLEAERSRSLELSEALQherLLTEQLSRNSQEACARQETQ 1510
Cdd:TIGR02169 882 SRLGDLKKERDELEAQLR----------ELERKI-EELEAQIEKKRKRLSELKAKLE---ALEEELSEIEDPKGEDEEIP 947
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568966951 1511 VQHALLRKLKAEKTRALELEAMLEKVQKQAahtqQQLEAQAQERCVELRREKEReLEIQRQRDEHKIEQLQRLVRE 1586
Cdd:TIGR02169 948 EEELSLEDVQAELQRVEEEIRALEPVNMLA----IQEYEEVLKRLDELKEKRAK-LEEERKAILERIEEYEKKKRE 1018
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
140-562 |
3.60e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 48.91 E-value: 3.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLA-----LELHTAKGLLEGFKVEKVDLQEALGK 214
Cdd:PRK03918 391 KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPvcgreLTEEHRKELLEEYTAELKRIEKELKE 470
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 215 KEESEQQLILELEDLRKQLQQAaRELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLtrvqwesrkqsEKDRATLL 294
Cdd:PRK03918 471 IEEKERKLRKELRELEKVLKKE-SELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKL-----------KEKLIKLK 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 295 SQMRVLESELEdqlvqhrgcaqlaeEVATLKQQLAALDKHLRSqrqfmddqaaerehereeFQQEIQRLEGQLRQAARpr 374
Cdd:PRK03918 539 GEIKSLKKELE--------------KLEELKKKLAELEKKLDE------------------LEEELAELLKELEELGF-- 584
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 375 ppgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDfADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSME 454
Cdd:PRK03918 585 -------------ESVEELEERLKELEPFYNEYLELKD-AEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELE 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 455 ELKEK-EILKQENMGDLLLTTVSR-SGLDEagcpmlpqgsSSRGPEAQPDVTERAL--LQHENEVVHRRNSEIDELKSLI 530
Cdd:PRK03918 651 ELEKKySEEEYEELREEYLELSRElAGLRA----------ELEELEKRREEIKKTLekLKEELEEREKAKKELEKLEKAL 720
|
410 420 430
....*....|....*....|....*....|..
gi 568966951 531 ENLQENQRQLQKDKAEEIEQLHEVIEKLQSEL 562
Cdd:PRK03918 721 ERVEELREKVKKYKALLKERALSKVGEIASEI 752
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
1283-1593 |
4.59e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 4.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1283 HQLRRQVELLAykveQEKCIANELQKTLSK----EQETASDVRKRLVVEQNAVQDLKS-ELHACKQENTSLLESLDKVQQ 1357
Cdd:PTZ00121 1264 HFARRQAAIKA----EEARKADELKKAEEKkkadEAKKAEEKKKADEAKKKAEEAKKAdEAKKKAEEAKKKADAAKKKAE 1339
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1358 EVLRLRAVLDGKEKELKVVLEELEsERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHER 1437
Cdd:PTZ00121 1340 EAKKAAEAAKAEAEAAADEAEAAE-EKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1438 AAkDNLQKElqieasrceallAQEKGQLSELQKslEAERSRSLELSEALQHERLLTEQLSRNSQEACARQEtqvqhalLR 1517
Cdd:PTZ00121 1419 KA-DEAKKK------------AEEKKKADEAKK--KAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE-------AK 1476
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1518 KLKAEKTRALELEAMLEKVQKQAahTQQQLEAQAQERCVELRREKE-------RELEIQRQRDEHKIEQLQRLVRELRWK 1590
Cdd:PTZ00121 1477 KKAEEAKKADEAKKKAEEAKKKA--DEAKKAAEAKKKADEAKKAEEakkadeaKKAEEAKKADEAKKAEEKKKADELKKA 1554
|
...
gi 568966951 1591 EEV 1593
Cdd:PTZ00121 1555 EEL 1557
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
225-459 |
5.35e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 5.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 225 ELEDLRKQLQQAARELLTLKEEKSVLwnqkeTLTNEAKEREAALQEEVESLTRVQweSRKQSEKDRATLLSQMRVLESEL 304
Cdd:COG3206 183 QLPELRKELEEAEAALEEFRQKNGLV-----DLSEEAKLLLQQLSELESQLAEAR--AELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 305 EDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMddqaaereherEEFQQEIQRLEGQLRQAARprppgprdSQCV 384
Cdd:COG3206 256 LPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDV-----------IALRAQIAALRAQLQQEAQ--------RILA 316
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568966951 385 QLDEEVELLQEKLREkldgfnelvikkdfADQQLLIQEEEIKRLeetnASIQRQMVQLQEELEKQKKSMEELKEK 459
Cdd:COG3206 317 SLEAELEALQAREAS--------------LQAQLAQLEARLAEL----PELEAELRRLEREVEVARELYESLLQR 373
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
1103-1381 |
5.56e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 5.56e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1103 KEKEIHAKQMKALLQMVfDESHQILALSESQDPSSALNKGEPRDPLDgfprdsqALSEVTTDKGEKESLETH-----LTW 1177
Cdd:TIGR02169 230 KEKEALERQKEAIERQL-ASLEEELEKLTEEISELEKRLEEIEQLLE-------ELNKKIKDLGEEEQLRVKekigeLEA 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1178 SEELLRAIQEVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGdpqkvqdhlclSDRSSLLAEIQALRAQLRMTH 1257
Cdd:TIGR02169 302 EIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEER-----------KRRDKLTEEYAELKEELEDLR 370
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1258 LQNQEKlqqlcaaltSTEARGSQREH-QLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVR---KRLVVEQNAVQ- 1332
Cdd:TIGR02169 371 AELEEV---------DKEFAETRDELkDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNaaiAGIEAKINELEe 441
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568966951 1333 ---DLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELE 1381
Cdd:TIGR02169 442 ekeDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
357-483 |
7.29e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 47.93 E-value: 7.29e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 357 QQEIQRLEGQLRQaarprppgprdsqcvqLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQ---EEEIKRLEETNA 433
Cdd:COG2433 412 EEEIRRLEEQVER----------------LEAEVEELEAELEEKDERIERLERELSEARSEERREirkDREISRLDREIE 475
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 568966951 434 SIQRQMVQLQEELEKQKKSMEELkeKEILKQENMGDLL----LTTVSRSGLDEA 483
Cdd:COG2433 476 RLERELEEERERIEELKRKLERL--KELWKLEHSGELVpvkvVEKFTKEAIRRL 527
|
|
| HEC1 |
COG5185 |
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell ... |
209-471 |
7.51e-05 |
|
Chromosome segregation protein NDC80, interacts with SMC proteins [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 444066 [Multi-domain] Cd Length: 594 Bit Score: 47.64 E-value: 7.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 209 QEALGKKEESEQQLILELEDLRKQLQQAARELL----TLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWEsrk 284
Cdd:COG5185 267 LEKLGENAESSKRLNENANNLIKQFENTKEKIAeytkSIDIKKATESLEEQLAAAEAEQELEESKRETETGIQNLTA--- 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 285 QSEKDRATLLSQMRVLESELEdQLVQHRGCAQLAEEVATLKQQLAALDKHL----RSQRQFMDDQAAEREHEREEFQQEI 360
Cdd:COG5185 344 EIEQGQESLTENLEAIKEEIE-NIVGEVELSKSSEELDSFKDTIESTKESLdeipQNQRGYAQEILATLEDTLKAADRQI 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 361 QRLEGQLRQAARprppgprdsqcvqldeEVELLQEKLREKLDGFNELVIKKDFADQQLLIQE--EEIKRLEETNASIQRQ 438
Cdd:COG5185 423 EELQRQIEQATS----------------SNEEVSKLLNELISELNKVMREADEESQSRLEEAydEINRSVRSKKEDLNEE 486
|
250 260 270
....*....|....*....|....*....|...
gi 568966951 439 MVQLQEELEKQKKSMEELKEKEILKQENMGDLL 471
Cdd:COG5185 487 LTQIESRVSTLKATLEKLRAKLERQLEGVRSKL 519
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
223-671 |
7.98e-05 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 47.91 E-value: 7.98e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 223 ILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLES 302
Cdd:pfam12128 243 FTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRS 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 303 ELEDQLVQHRgcAQLAEEVATLKQQLAALDKhLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQlrqaarprppgpRDSQ 382
Cdd:pfam12128 323 ELEALEDQHG--AFLDADIETAAADQEQLPS-WQSELENLEERLKALTGKHQDVTAKYNRRRSK------------IKEQ 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 383 CVqldEEVELLQEKLREkldgfnelvikkdfadqqllIQEEEIKRLEETNASIQRQMVQLQEELEKQKKsmeELKEKEIL 462
Cdd:pfam12128 388 NN---RDIAGIKDKLAK--------------------IREARDRQLAVAEDDLQALESELREQLEAGKL---EFNEEEYR 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 463 KQENMGDLllttvsrsgldeagcpmlpqgsssRGPEAQPDVTERALLQHEN--EVVHRRNSEIDELKSLIENLQENQRQL 540
Cdd:pfam12128 442 LKSRLGEL------------------------KLRLNQATATPELLLQLENfdERIERAREEQEAANAEVERLQSELRQA 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 541 QK--DKA-EEIEQLHEVIEKLQSELSlmgpKVHEVSDPQAGSLHSELA------------CLRGEGLGGQALRSELQAAQ 605
Cdd:pfam12128 498 RKrrDQAsEALRQASRRLEERQSALD----ELELQLFPQAGTLLHFLRkeapdweqsigkVISPELLHRTDLDPEVWDGS 573
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568966951 606 AAKE--VFG------QLLADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAmASQIQEFAAT 671
Cdd:pfam12128 574 VGGElnLYGvkldlkRIDVPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEK-ASREETFART 646
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
115-452 |
8.21e-05 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 48.02 E-value: 8.21e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 115 QPIRRVYQSLSTAVEGLLEMALDSS--KQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELH 192
Cdd:COG3096 809 QKLQRLHQAFSQFVGGHLAVAFAPDpeAELAALRQRRSELEREL----AQHRAQEQQLRQQLDQLKEQLQLLNKLLPQAN 884
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 193 TakgLLEGFKVEKVD-LQEALGKKEESEQQL------ILELEDLRKQLQ-------QAARELLTLKEEKSVLWNQKETLT 258
Cdd:COG3096 885 L---LADETLADRLEeLREELDAAQEAQAFIqqhgkaLAQLEPLVAVLQsdpeqfeQLQADYLQAKEQQRRLKQQIFALS 961
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 259 NEAKEREA-ALQEEVESLTrvqwESRKQSEKDRAtllsQMRVLESELEDQLVQHRgcaQLAEEVATLKQQLAALDKHLRS 337
Cdd:COG3096 962 EVVQRRPHfSYEDAVGLLG----ENSDLNEKLRA----RLEQAEEARREAREQLR---QAQAQYSQYNQVLASLKSSRDA 1030
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 338 QRQFMDDqaaerehereeFQQEIQRLEgqlrqaarprppgprdsqcVQLDEEVEllqEKLREKLDGFNELVI----KKDF 413
Cdd:COG3096 1031 KQQTLQE-----------LEQELEELG-------------------VQADAEAE---ERARIRRDELHEELSqnrsRRSQ 1077
|
330 340 350
....*....|....*....|....*....|....*....
gi 568966951 414 ADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKS 452
Cdd:COG3096 1078 LEKQLTRCEAEMDSLQKRLRKAERDYKQEREQVVQAKAG 1116
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
140-683 |
8.83e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.75 E-value: 8.83e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESE 219
Cdd:PRK03918 186 KRTENIEELIKEKEKEL----EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKI 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 220 QQL---ILELEDLRKQLQQAARELLTLKEEK------SVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKdr 290
Cdd:PRK03918 262 RELeerIEELKKEIEELEEKVKELKELKEKAeeyiklSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEER-- 339
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 291 atlLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSqrqfmddqaaerehereefqQEIQRLEGQLRQA 370
Cdd:PRK03918 340 ---LEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG--------------------LTPEKLEKELEEL 396
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 371 ARPRppgprdsqcvqldEEVELLQEKLREKLDGFNELVIKKDFADQQL------------LIQEEEIKRLEETN----AS 434
Cdd:PRK03918 397 EKAK-------------EEIEEEISKITARIGELKKEIKELKKAIEELkkakgkcpvcgrELTEEHRKELLEEYtaelKR 463
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 435 IQRQMVQLQEELEKQKKSMEEL-----KEKEILKQENMGDLLLTTvsRSGLDEAGCPMLpqgssSRGPEAQPDVTERAL- 508
Cdd:PRK03918 464 IEKELKEIEEKERKLRKELRELekvlkKESELIKLKELAEQLKEL--EEKLKKYNLEEL-----EKKAEEYEKLKEKLIk 536
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 509 LQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEV----IEKLQSELSLMGP---KVHEVSDPQAgSLH 581
Cdd:PRK03918 537 LKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPfynEYLELKDAEK-ELE 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 582 SELACLRGEGLGGQALRSELQAAQAAKEVFgqlladqahghSQALEALQQRLQDAE-EVAARHLAELEHCVALREAEVEA 660
Cdd:PRK03918 616 REEKELKKLEEELDKAFEELAETEKRLEEL-----------RKELEELEKKYSEEEyEELREEYLELSRELAGLRAELEE 684
|
570 580
....*....|....*....|...
gi 568966951 661 MASQIQEFAATLKAKEAIIEQRD 683
Cdd:PRK03918 685 LEKRREEIKKTLEKLKEELEERE 707
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1328-1531 |
1.04e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 46.75 E-value: 1.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1328 QNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKgQALQAQQEEQQLRYLQREGQ 1407
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAE-IEERREELGERARALYRSGG 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1408 SSRALEELKLS------------LEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLSELQKSLEAE 1475
Cdd:COG3883 101 SVSYLDVLLGSesfsdfldrlsaLSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAKAELEAQQAEQ 180
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568966951 1476 RSRSLELSEAlqhERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEA 1531
Cdd:COG3883 181 EALLAQLSAE---EAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAAAAA 233
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
225-449 |
1.09e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.60 E-value: 1.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 225 ELEDLRKQ------LQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMR 298
Cdd:COG4913 243 ALEDAREQiellepIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALR 322
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 299 VLESELEDQLVQHRG--CAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRqaarprpp 376
Cdd:COG4913 323 EELDELEAQIRGNGGdrLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAALLE-------- 394
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 377 gprdsqcvQLDEEVELLQEKLREKLDGFNELvikkdfaDQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQ 449
Cdd:COG4913 395 --------ALEEELEALEEALAEAEAALRDL-------RRELRELEAEIASLERRKSNIPARLLALRDALAEA 452
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
131-608 |
1.13e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 47.41 E-value: 1.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 131 LLEMALDSSKQLEEARQLHrcvEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQE 210
Cdd:pfam05483 262 LLEESRDKANQLEEKTKLQ---DENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQME 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 211 ALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSvlwNQKETLTNEAKEREAALQEevesltRVQWESRKQSEkdr 290
Cdd:pfam05483 339 ELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNE---DQLKIITMELQKKSSELEE------MTKFKNNKEVE--- 406
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 291 atlLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQA 370
Cdd:pfam05483 407 ---LEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 371 ARPRPPGPRDSQCVQLdEEVELLQE--KLREKLDGFNELVIKKDFADQQLLIQeeeIKRLEETNASIQRQMVQLQEELEK 448
Cdd:pfam05483 484 KLKNIELTAHCDKLLL-ENKELTQEasDMTLELKKHQEDIINCKKQEERMLKQ---IENLEEKEMNLRDELESVREEFIQ 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 449 QKksmeelkekeilkqenmgdlllttvsrsglDEAGCPMLPQGSSSRGPEAQPDVTERALLQHENEVVHRRnSEIDELKS 528
Cdd:pfam05483 560 KG------------------------------DEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLK-KQIENKNK 608
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 529 LIENLQENQRQLQKDKAEEIEQL--HEV-IEKLQSELSLMGPKVHEVSDPQAGSLhsELACLRGEGLGGQALRSELQAAQ 605
Cdd:pfam05483 609 NIEELHQENKALKKKGSAENKQLnaYEIkVNKLELELASAKQKFEEIIDNYQKEI--EDKKISEEKLLEEVEKAKAIADE 686
|
...
gi 568966951 606 AAK 608
Cdd:pfam05483 687 AVK 689
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
197-823 |
1.16e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.27 E-value: 1.16e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 197 LLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLqqaarELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLT 276
Cdd:TIGR00618 169 LMNLFPLDQYTQLALMEFAKKKSLHGKAELLTLRSQL-----LTLCTPCMPDTYHERKQVLEKELKHLREALQQTQQSHA 243
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 277 RVQWESRKQSEKDR-ATLLSQMRVLESELEDQLVQH----------RGCAQLAEEV--------------ATLKQQLAAL 331
Cdd:TIGR00618 244 YLTQKREAQEEQLKkQQLLKQLRARIEELRAQEAVLeetqerinraRKAAPLAAHIkavtqieqqaqrihTELQSKMRSR 323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 332 DKhLRSQRQFMDDQAAEREHEREEFQQeIQRLEGQLRQAARpRPPGPRDSQCVQLDEEVELLQEK------------LRE 399
Cdd:TIGR00618 324 AK-LLMKRAAHVKQQSSIEEQRRLLQT-LHSQEIHIRDAHE-VATSIREISCQQHTLTQHIHTLQqqkttltqklqsLCK 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 400 KLDGFNELVIKKDFADQ-------QLLIQEEEIKrLEETNASIQRQMVQLQEELEKQK-----KSMEELKEKEilKQENM 467
Cdd:TIGR00618 401 ELDILQREQATIDTRTSafrdlqgQLAHAKKQQE-LQQRYAELCAAAITCTAQCEKLEkihlqESAQSLKERE--QQLQT 477
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 468 GDLLLTTVSRSGLDEAGCPMLPQG------SSSRGPEAQ------PDVTERALLQHENEVV----------HRRNSEIDE 525
Cdd:TIGR00618 478 KEQIHLQETRKKAVVLARLLELQEepcplcGSCIHPNPArqdidnPGPLTRRMQRGEQTYAqletseedvyHQLTSERKQ 557
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 526 LKSLIENLQENQRQLQKdKAEEIEQLHEVIEKLQSELSLM---GPKVHEVSDPQAGSLHSELACLRGE------GLGGQA 596
Cdd:TIGR00618 558 RASLKEQMQEIQQSFSI-LTQCDNRSKEDIPNLQNITVRLqdlTEKLSEAEDMLACEQHALLRKLQPEqdlqdvRLHLQQ 636
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 597 LRSELQAAQAAKEVFGQLLADQAHGHSQAL------------EALQQRLQDAEEVAARHLAELEHC-VALREAE--VEAM 661
Cdd:TIGR00618 637 CSQELALKLTALHALQLTLTQERVREHALSirvlpkellasrQLALQKMQSEKEQLTYWKEMLAQCqTLLRELEthIEEY 716
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 662 ASQIQEFAATLKAKEAIIEQRDLEIDAVNKwKVSHSLELEAILLALAHFRHALEQQTCATPDEppELRQLRVQCARLSHQ 741
Cdd:TIGR00618 717 DREFNEIENASSSLGSDLAAREDALNQSLK-ELMHQARTVLKARTEAHFNNNEEVTAALQTGA--ELSHLAAEIQFFNRL 793
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 742 LQVLYRPFLKCRMQLDQHQPHVASIGCANpCADDELEQEGVSNRLALAPHSLAA--QAKEELEDCPLGKANLMAQVRQLQ 819
Cdd:TIGR00618 794 REEDTHLLKTLEAEIGQEIPSDEDILNLQ-CETLVQEEEQFLSRLEEKSATLGEitHQLLKYEECSKQLAQLTQEQAKII 872
|
....
gi 568966951 820 EELD 823
Cdd:TIGR00618 873 QLSD 876
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
167-561 |
1.24e-04 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 47.09 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 167 MQKQ-QELLERLREESAAKDRLALElhtakgllegfkveKVDLQEALGKKEESeqqlILELEDLRKQLQqaarelltlKE 245
Cdd:pfam01576 101 MQQHiQDLEEQLDEEEAARQKLQLE--------------KVTTEAKIKKLEED----ILLLEDQNSKLS---------KE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 246 EKSVLWNQKETLTNEAKEREAA-----LQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHrgcAQLAEE 320
Cdd:pfam01576 154 RKLLEERISEFTSNLAEEEEKAkslskLKNKHEAMISDLEERLKKEEKGRQELEKAKRKLEGESTDLQEQI---AELQAQ 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 321 VATLKQQLAALDKHLRSQRQFMDDQAAEREHEreefQQEIQRLEGQL---------RQAARPRPpgprDSQCVQLDEEVE 391
Cdd:pfam01576 231 IAELRAQLAKKEEELQAALARLEEETAQKNNA----LKKIRELEAQIselqedlesERAARNKA----EKQRRDLGEELE 302
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 392 LLQEKLREKLDGFN---ELVIKKDFADQQLLIQEEEIKRLEETNASIQRQ-----MVQLQEELEKQKKSMEEL-KEKEIL 462
Cdd:pfam01576 303 ALKTELEDTLDTTAaqqELRSKREQEVTELKKALEEETRSHEAQLQEMRQkhtqaLEELTEQLEQAKRNKANLeKAKQAL 382
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 463 KQEN--MGDLLLTTVSRSGLDEAGCPMLP---QGSSSRGPEAQPDVTERAllqhenEVVHRRNSEIDELKSLIENLQENQ 537
Cdd:pfam01576 383 ESENaeLQAELRTLQQAKQDSEHKRKKLEgqlQELQARLSESERQRAELA------EKLSKLQSELESVSSLLNEAEGKN 456
|
410 420
....*....|....*....|....
gi 568966951 538 RQLQKDKAEEIEQLHEVIEKLQSE 561
Cdd:pfam01576 457 IKLSKDVSSLESQLQDTQELLQEE 480
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
385-648 |
1.43e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 385 QLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEELkEKEILKQ 464
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL-RAELEAQ 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 465 ENMGDLLLTTVSRSGLDEAGCPMLPQGSSSRGpeaqpdVTERALLQHeneVVHRRNSEIDELKSLIENLQENQRQLQKDK 544
Cdd:COG4942 103 KEELAELLRALYRLGRQPPLALLLSPEDFLDA------VRRLQYLKY---LAPARREQAEELRADLAELAALRAELEAER 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 545 AEeieqlhevIEKLQSELslmgpkvhevsdpqagslhselaclrgeglggQALRSELQAAQAAKEVFGQLLADQAHGHSQ 624
Cdd:COG4942 174 AE--------LEALLAEL--------------------------------EEERAALEALKAERQKLLARLEKELAELAA 213
|
250 260
....*....|....*....|....
gi 568966951 625 ALEALQQRLQDAEEVAARHLAELE 648
Cdd:COG4942 214 ELAELQQEAEELEALIARLEAEAA 237
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
165-566 |
1.45e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 46.68 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 165 QAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQ--QLILELEDLRKQLQQAARELLT 242
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEE 150
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 243 LKEEKSV---LWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAE 319
Cdd:COG4717 151 LEERLEElreLEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELE----------EAQE 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 320 EVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEK--L 397
Cdd:COG4717 221 ELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKasL 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 398 REKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQ----RQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLT 473
Cdd:COG4717 301 GKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELlellDRIEELQELLREAEELEEELQLEELEQEIAALLAEAG 380
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 474 TVSRSGLDEAgcpmLPQGSSSRGPEAQPDVTERALLQHENEVVHR-RNSEIDELKSLIENLQENQRQLQkdkaEEIEQLH 552
Cdd:COG4717 381 VEDEEELRAA----LEQAEEYQELKEELEELEEQLEELLGELEELlEALDEEELEEELEELEEELEELE----EELEELR 452
|
410
....*....|....
gi 568966951 553 EVIEKLQSELSLMG 566
Cdd:COG4717 453 EELAELEAELEQLE 466
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
175-372 |
1.64e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.30 E-value: 1.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 175 ERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQK 254
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 255 ETLTNEAKEREAALQ-----EEVESLtrVQWESRKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLA 329
Cdd:COG4942 100 EAQKEELAELLRALYrlgrqPPLALL--LSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELE 177
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568966951 330 ALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAAR 372
Cdd:COG4942 178 ALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ 220
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
1211-1592 |
1.71e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1211 NSLVQRLEkVIQEQGDPQKVQDHLCLSDRSSLLAEIQA-LRAQLRMTHLQNQEKLQQLCAALTS-TEARG-----SQREH 1283
Cdd:pfam15921 295 NSIQSQLE-IIQEQARNQNSMYMRQLSDLESTVSQLRSeLREAKRMYEDKIEELEKQLVLANSElTEARTerdqfSQESG 373
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1284 QLRRQVE-LLA--YKVEQEKCIANELQKTL----SKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSLL------- 1349
Cdd:pfam15921 374 NLDDQLQkLLAdlHKREKELSLEKEQNKRLwdrdTGNSITIDHLRRELDDRNMEVQRLEALLKAMKSECQGQMerqmaai 453
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1350 ----ESLDKVQQevlrLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgqssRALEELKLSLEKQLAQ 1425
Cdd:pfam15921 454 qgknESLEKVSS----LTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKE----RAIEATNAEITKLRSR 525
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1426 NNQLCVALKHERAAKDNLQkELQIEasrCEALlaqeKGQLSELQKSLEAERSRSLELSEAL-QHERLLTEQLSRNSQ--- 1501
Cdd:pfam15921 526 VDLKLQELQHLKNEGDHLR-NVQTE---CEAL----KLQMAEKDKVIEILRQQIENMTQLVgQHGRTAGAMQVEKAQlek 597
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1502 EACARQETQVQHALLRKLKAEKTRALELEAM---LEKVQKQAAHTQQQLEAQaqercvELRREKEREL-EIQRQRDE--H 1575
Cdd:pfam15921 598 EINDRRLELQEFKILKDKKDAKIRELEARVSdleLEKVKLVNAGSERLRAVK------DIKQERDQLLnEVKTSRNElnS 671
|
410
....*....|....*..
gi 568966951 1576 KIEQLQRLVRELRWKEE 1592
Cdd:pfam15921 672 LSEDYEVLKRNFRNKSE 688
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
131-609 |
1.77e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.64 E-value: 1.77e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 131 LLEMALDS-SKQLEEARQLHRCVEREFrhrnEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQ 209
Cdd:pfam05483 381 IITMELQKkSSELEEMTKFKNNKEVEL----EELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLE 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 210 EALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTrvqwESRKQSEKd 289
Cdd:pfam05483 457 IQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDII----NCKKQEER- 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 290 ratLLSQMRVLEseledqlvqhrgcaqlaEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQ 369
Cdd:pfam05483 532 ---MLKQIENLE-----------------EKEMNLRDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKI 591
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 370 AarprppgprDSQCVQLDEEVElLQEKLREKLDGFNELVIKKDFAD-QQLLIQEEEIKRLEETNASIQRQMVQLQEELEK 448
Cdd:pfam05483 592 L---------ENKCNNLKKQIE-NKNKNIEELHQENKALKKKGSAEnKQLNAYEIKVNKLELELASAKQKFEEIIDNYQK 661
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 449 qkksmeELKEKEILKQENMGDLllttvsrsgldeagcpmlpqgsssrgPEAQPDVTERALLQheNEVVHRRNSEIDELKS 528
Cdd:pfam05483 662 ------EIEDKKISEEKLLEEV--------------------------EKAKAIADEAVKLQ--KEIDKRCQHKIAEMVA 707
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 529 LIEnlqenQRQLQKDKaeeieqlheVIEKLQSELSLMGPKVHEVSDPQAgSLHSELACLRGEGLggqALRSELQAAQAAK 608
Cdd:pfam05483 708 LME-----KHKHQYDK---------IIEERDSELGLYKNKEQEQSSAKA-ALEIELSNIKAELL---SLKKQLEIEKEEK 769
|
.
gi 568966951 609 E 609
Cdd:pfam05483 770 E 770
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1156-1628 |
1.84e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.85 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1156 QALSEVTTDKGEKESLETHLTWSEELLRAIQEVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGDPQKVQDHLc 1235
Cdd:COG1196 327 ELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEEL- 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1236 LSDRSSLLAEIQALRAQLRmTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLSKEQE 1315
Cdd:COG1196 406 EEAEEALLERLERLEEELE-ELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLE 484
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1316 TASDVRKRLVVEQNAVQDLKSELHAckqentSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQE 1395
Cdd:COG1196 485 ELAEAAARLLLLLEAEADYEGFLEG------VKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEV 558
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1396 EQQLRYLQREGQSSRAlEELKLSLEKQLAQNNQLCVALKHERAAkdNLQKELQIEASRCEALLAQEKGQLSELQKSLEAE 1475
Cdd:COG1196 559 AAAAIEYLKAAKAGRA-TFLPLDKIRARAALAAALARGAIGAAV--DLVASDLREADARYYVLGDTLLGRTLVAARLEAA 635
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1476 RSRSLELSEALQHERLLTEQLSRNSQEAcaRQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERC 1555
Cdd:COG1196 636 LRRAVTLAGRLREVTLEGEGGSAGGSLT--GGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAE 713
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 1556 VELRREKERELEIQRQRDEHKIEQLQRLVRELrwKEEVSGGNGPCRGSPGRGSLERDQFqeqqqeleKIRQQL 1628
Cdd:COG1196 714 EERLEEELEEEALEEQLEAEREELLEELLEEE--ELLEEEALEELPEPPDLEELERELE--------RLEREI 776
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1222-1531 |
2.09e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 46.27 E-value: 2.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1222 QEQGDPQKVQDHLCLSDRSSLLAEIQAlRAQLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRqVELLAYKVEQEKC 1301
Cdd:pfam17380 288 QQQEKFEKMEQERLRQEKEEKAREVER-RRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELER-IRQEERKRELERI 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1302 IANELQKTLSKEQETasdvrKRLVVE-QNAVQDLKSELHACKQENTSLLESLDKVQQEVLRLRAVLDGKEKELKVVLEEL 1380
Cdd:pfam17380 366 RQEEIAMEISRMREL-----ERLQMErQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRL 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1381 ESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQlAQNNQLCVALKH---ERAAKDNLQKELQIEASR--CE 1455
Cdd:pfam17380 441 EEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKE-KRDRKRAEEQRRkilEKELEERKQAMIEEERKRklLE 519
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568966951 1456 ALLAQEKGQLSELQKSLEAERSRSLElsEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEA 1531
Cdd:pfam17380 520 KEMEERQKAIYEEERRREAEEERRKQ--QEMEERRRIQEQMRKATEERSRLEAMEREREMMRQIVESEKARAEYEA 593
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1307-1592 |
2.67e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.88 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1307 QKTLSKEQETasdvRKRLVVEQNAVQDLKSELhACKQENTSLLESLDKVQQEVLRLRAVLDGkEKELKVVLEELESERGK 1386
Cdd:pfam17380 281 QKAVSERQQQ----EKFEKMEQERLRQEKEEK-AREVERRRKLEEAEKARQAEMDRQAAIYA-EQERMAMERERELERIR 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1387 GQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQIEASRCEALLAQEKGQLS 1466
Cdd:pfam17380 355 QEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1467 ELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELE--------AMLEKVQK 1538
Cdd:pfam17380 435 REVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEkeleerkqAMIEEERK 514
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568966951 1539 QAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHK-IEQLQRLVRELRWKEE 1592
Cdd:pfam17380 515 RKLLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRrIQEQMRKATEERSRLE 569
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
3-277 |
3.43e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 3 RADLELAQGEGKALRDALRRLLDLFGDTLKAAVTLKSRISERAGLLLDHEDAADTSDARLAAAALGDmwSDEGLLEIDRT 82
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKA--AKAGRATFLPL 579
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 83 LPEGAETSSVCEISSHVCESFFISPENTLDCEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEE 162
Cdd:COG1196 580 DKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAG 659
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 163 MAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLT 242
Cdd:COG1196 660 GSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLE 739
|
250 260 270
....*....|....*....|....*....|....*
gi 568966951 243 LKEEKSVLWNQKETLTNEAKEREAALQEEVESLTR 277
Cdd:COG1196 740 ELLEEEELLEEEALEELPEPPDLEELERELERLER 774
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
135-378 |
3.62e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.14 E-value: 3.62e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 135 ALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEgfkvekvDLQEALGK 214
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELA-------ALEAELAE 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 215 KEESEQQLILELEDLRKQLQQAARELLTLKEEKSVlwnqKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLL 294
Cdd:COG4942 88 LEKEIAELRAELEAQKEELAELLRALYRLGRQPPL----ALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 295 SQMRVLESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPR 374
Cdd:COG4942 164 ALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERT 243
|
....
gi 568966951 375 PPGP 378
Cdd:COG4942 244 PAAG 247
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
1369-1592 |
4.55e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 45.35 E-value: 4.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1369 KEKELKVVLEELESERgkgqALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQLCVA-LKHERAAKDNLQKEL 1447
Cdd:pfam02463 171 KKEALKKLIEETENLA----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDyLKLNEERIDLLQELL 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1448 QIEASRCEALLAQEKGQLSELQKSLEAERSRslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRAL 1527
Cdd:pfam02463 247 RDEQEEIESSKQEIEKEEEKLAQVLKENKEE--EKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKEKK 324
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568966951 1528 ELEAMLEKVQKQAAHtqqqleaqaqercvelRREKERELEIQRQRDEHKIEQLQRLVRELRWKEE 1592
Cdd:pfam02463 325 KAEKELKKEKEEIEE----------------LEKELKELEIKREAEEEEEEELEKLQEKLEQLEE 373
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
154-311 |
4.96e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 43.76 E-value: 4.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 154 REFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGfkvekvDLQEALGKKEESEQQLIL-----ELED 228
Cdd:COG1579 20 DRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLEL------EIEEVEARIKKYEEQLGNvrnnkEYEA 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 229 LRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQ---SEKDRATLLSQMRVLESELE 305
Cdd:COG1579 94 LQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEElaeLEAELEELEAEREELAAKIP 173
|
....*.
gi 568966951 306 DQLVQH 311
Cdd:COG1579 174 PELLAL 179
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
168-470 |
5.69e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 45.01 E-value: 5.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 168 QKQQELLERLREESAAKDRlalELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 247
Cdd:TIGR04523 303 QKEQDWNKELKSELKNQEK---KLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 248 SVLWNQKETLTNEAKEREAALQEevesltrvQWESRKQSEKDRATLLSQMRVLESELEDQLVQHrgcAQLAEEVATLKQQ 327
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQN--------QEKLNQQKDEQIKKLQQEKELLEKEIERLKETI---IKNNSEIKDLTNQ 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 328 LAALDKHLRSQRQFMDDQAAEREHEREEF----------QQEIQRLEGQLRQAarprppgprDSQCVQLDEEVELLQEKL 397
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSInkikqnleqkQKELKSKEKELKKL---------NEEKKELEEKVKDLTKKI 519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 398 REKLDGFNELVIKKDFADQQLLIQEEEIKR---------LEETNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMG 468
Cdd:TIGR04523 520 SSLKEKIEKLESEKKEKESKISDLEDELNKddfelkkenLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKK 599
|
..
gi 568966951 469 DL 470
Cdd:TIGR04523 600 DL 601
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
122-563 |
6.12e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 6.12e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVErEFRHRNEEMAQAMQKQQELLERLREESAAK-DRLALELHTAKGLLEG 200
Cdd:pfam15921 110 QSVIDLQTKLQEMQMERDAMADIRRRESQSQE-DLRNQLQNTVHELEAAKCLKEDMLEDSNTQiEQLRKMMLSHEGVLQE 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 201 FKVEKVDLQEALGKK-EESEQQLILELEDLRKQLQQAARELLT----LKEEKSVLWNQKETLTNEAKER-EAALQE---- 270
Cdd:pfam15921 189 IRSILVDFEEASGKKiYEHDSMSTMHFRSLGSAISKILRELDTeisyLKGRIFPVEDQLEALKSESQNKiELLLQQhqdr 268
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 271 ----------EVESLTRVQWESRKQSEkdraTLLSQMRVLESELEDQLVQH-RGCAQLAEEVATLKQQLAALDK------ 333
Cdd:pfam15921 269 ieqlisehevEITGLTEKASSARSQAN----SIQSQLEIIQEQARNQNSMYmRQLSDLESTVSQLRSELREAKRmyedki 344
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 334 -HLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGFNELVIKKD 412
Cdd:pfam15921 345 eELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLL---------ADLHKREKELSLEKEQNKRLWDRDTGNSITID 415
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 413 FADQQLLIQEEEIKRLE--------ETNASIQRQMVQLQ---EELEKQKKSMEELKE-KEILkqenmgdlllttvsRSGL 480
Cdd:pfam15921 416 HLRRELDDRNMEVQRLEallkamksECQGQMERQMAAIQgknESLEKVSSLTAQLEStKEML--------------RKVV 481
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 481 DEAGCPMLPQGSSSRgpeAQPDVTerALLQHENEVVHRRNSEIDELKSLIEnLQENQRQLQKDKAEEIEQLHEVIEKLQS 560
Cdd:pfam15921 482 EELTAKKMTLESSER---TVSDLT--ASLQEKERAIEATNAEITKLRSRVD-LKLQELQHLKNEGDHLRNVQTECEALKL 555
|
...
gi 568966951 561 ELS 563
Cdd:pfam15921 556 QMA 558
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
551-687 |
6.98e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.19 E-value: 6.98e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 551 LHEVIEKLQSELSLMGPKVHEVSD------PQAGSLHSELACLRGEGLGGQALRSELQAAQAAKEVFGQLLADQAHGHSQ 624
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADllslerQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQ 123
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 625 ALEALQQrlqdaeeVAARHLAElehcVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEID 687
Cdd:PRK09039 124 ELDSEKQ-------VSARALAQ----VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
|
|
| MukB |
COG3096 |
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell ... |
98-395 |
7.85e-04 |
|
Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442330 [Multi-domain] Cd Length: 1470 Bit Score: 44.56 E-value: 7.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 98 HVCESFFISPENTLDCEQPIRRVYQSLSTAVEGL---LEMALDSSKQLEEARQLHRCVEREFrhrneEMAQAMQKQQELL 174
Cdd:COG3096 427 ALCGLPDLTPENAEDYLAAFRAKEQQATEEVLELeqkLSVADAARRQFEKAYELVCKIAGEV-----ERSQAWQTARELL 501
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 175 ERLREESAAKDRLalelhtakgllegfkvekvdlqealgkkeeseQQLILELEDLRKQL--QQAARELLtlkEEKSVLWN 252
Cdd:COG3096 502 RRYRSQQALAQRL--------------------------------QQLRAQLAELEQRLrqQQNAERLL---EEFCQRIG 546
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 253 QKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLlSQMRVLESELED--------QLVQHRGCAQLAEEVATL 324
Cdd:COG3096 547 QQLDAAEELEELLAELEAQLEELEEQAAEAVEQRSELRQQL-EQLRARIKELAArapawlaaQDALERLREQSGEALADS 625
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568966951 325 KQQLAALDKHLRSQRQFmddqaaerEHEREEFQQEIQRLEGQLRQAArpRPPGPRDSQCVQLDEEV--ELLQE 395
Cdd:COG3096 626 QEVTAAMQQLLEREREA--------TVERDELAARKQALESQIERLS--QPGGAEDPRLLALAERLggVLLSE 688
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
140-303 |
8.54e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 8.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 140 KQLEEARQLH-RCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELhtakgllegfkvekvdlqealgKKEES 218
Cdd:pfam17380 427 AEQEEARQREvRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLEL----------------------EKEKR 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 219 EQQLILELEDLRKQLQQAARELLTLKEEksvlwNQKETLTNEAKEREAALQEEvESLTRVQWESRKQSE-KDRATLLSQM 297
Cdd:pfam17380 485 DRKRAEEQRRKILEKELEERKQAMIEEE-----RKRKLLEKEMEERQKAIYEE-ERRREAEEERRKQQEmEERRRIQEQM 558
|
....*.
gi 568966951 298 RVLESE 303
Cdd:pfam17380 559 RKATEE 564
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
113-685 |
1.15e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.29 E-value: 1.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 113 CEQPIRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRN---EEMAQAMQKQQELLERLREESAAKDRLAL 189
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDkltEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 190 ELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSvlwnqketltneakereaALQ 269
Cdd:TIGR02169 386 ELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE------------------DKA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 270 EEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAEEVATLKQQLAALDKhlrsQRQFMDDQAAER 349
Cdd:TIGR02169 448 LEIKKQEW----KLEQLAADLSKYEQELYDLKEEYD----------RVEKELSKLQRELAEAEA----QARASEERVRGG 509
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 350 EHEREEFQQEIQRLEGQLRQAARPRP---------PGPRDSQCVQLDEEV-----ELLQE------------KLREK--- 400
Cdd:TIGR02169 510 RAVEEVLKASIQGVHGTVAQLGSVGEryataievaAGNRLNNVVVEDDAVakeaiELLKRrkagratflplnKMRDErrd 589
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 401 -----LDGFN-------------ELVIKKDFADQQLLIQEEEIKRLeetnaSIQRQMVQLQEELEKQKKSM--------- 453
Cdd:TIGR02169 590 lsilsEDGVIgfavdlvefdpkyEPAFKYVFGDTLVVEDIEAARRL-----MGKYRMVTLEGELFEKSGAMtggsraprg 664
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 454 -----EELKEKEILKQENMGDL------LLTTVSR--SGLDEAgcpmlpqgsSSRGPEAQPDVTERALLQHENEVVHRRN 520
Cdd:TIGR02169 665 gilfsRSEPAELQRLRERLEGLkrelssLQSELRRieNRLDEL---------SQELSDASRKIGEIEKEIEQLEQEEEKL 735
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 521 SE-IDELKSLIENLQ---ENQRQLQKDKAEEIEQLHEVIEKLQSELslmgpkvhevSDPQAGSLHSELACLRGEGLGGQA 596
Cdd:TIGR02169 736 KErLEELEEDLSSLEqeiENVKSELKELEARIEELEEDLHKLEEAL----------NDLEARLSHSRIPEIQAELSKLEE 805
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 597 LRSELQAAqaakevfgqllADQAHGHSQALEALQQRLQDAEEVAARHLAELEHCVALREAEVEAMASQIQEFAATLKAKE 676
Cdd:TIGR02169 806 EVSRIEAR-----------LREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELE 874
|
....*....
gi 568966951 677 AiiEQRDLE 685
Cdd:TIGR02169 875 A--ALRDLE 881
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1187-1586 |
1.27e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1187 EVFAREQEKAELQPRPYGSNLGDYNSLVQRLEKVIQEQGDPQKVQDHLcLSDRSSLLAEIQALRAQLRMTHLQNQekLQQ 1266
Cdd:COG4717 67 ELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEEL-REELEKLEKLLQLLPLYQELEALEAE--LAE 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1267 LCAALTSTEARGSQREHQLRRQVELLAYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT 1346
Cdd:COG4717 144 LPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELE 223
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1347 SLLESLDKVQQEVLRLR------------------AVLDGKEKELK------------------VVLEELESERGKGQAL 1390
Cdd:COG4717 224 ELEEELEQLENELEAAAleerlkearlllliaaalLALLGLGGSLLsliltiagvlflvlgllaLLFLLLAREKASLGKE 303
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1391 QAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQL---CVALKHERAAKDNLQKELQIEAS--RCEALLAQEK-GQ 1464
Cdd:COG4717 304 AEELQALPALEELEEEELEELLAALGLPPDLSPEELLELldrIEELQELLREAEELEEELQLEELeqEIAALLAEAGvED 383
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1465 LSELQKSLEAERsrslELSEALQHERLLTEQLSRNSQEACARQETQVQHALLRKLKAEKTRALELEAMLEKVQKQAAHTQ 1544
Cdd:COG4717 384 EEELRAALEQAE----EYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELE 459
|
410 420 430 440
....*....|....*....|....*....|....*....|...
gi 568966951 1545 QqleaqaqercvELRR-EKERELEIQRQRDEHKIEQLQRLVRE 1586
Cdd:COG4717 460 A-----------ELEQlEEDGELAELLQELEELKAELRELAEE 491
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
1213-1588 |
1.28e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 43.60 E-value: 1.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1213 LVQRLEKVIQEQGDPQKVQDHLCLSDRSSLLAEIQALRAQLRmTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVELL 1292
Cdd:COG4717 47 LLERLEKEADELFKPQGRKPELNLKELKELEEELKEAEEKEE-EYAELQEELEELEEELEELEAELEELREELEKLEKLL 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1293 AYK--VEQEKCIANELQ------KTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENT--------SLLESLDKVQ 1356
Cdd:COG4717 126 QLLplYQELEALEAELAelperlEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateeelqDLAEELEELQ 205
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1357 QEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRALEELKLSLEKQLAQNNQL------- 1429
Cdd:COG4717 206 QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgl 285
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1430 --CVALKHERAAKDNLQKELQIEASRCEALLAQE--KGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQEACA 1505
Cdd:COG4717 286 laLLFLLLAREKASLGKEAEELQALPALEELEEEelEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQL 365
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1506 RQETQVQHALLRKLKAEKTRALELEAM----LEKVQKQAAHTQQQLEAQAQERCVELRREKERELEIQRQRDEHKIEQLQ 1581
Cdd:COG4717 366 EELEQEIAALLAEAGVEDEEELRAALEqaeeYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELE 445
|
....*..
gi 568966951 1582 RLVRELR 1588
Cdd:COG4717 446 EELEELR 452
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
216-574 |
1.56e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.74 E-value: 1.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 216 EESEQQLILELEDLRKQLQQ---AARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWE-----SRKQSE 287
Cdd:PRK01156 189 EEKLKSSNLELENIKKQIADdekSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLEDMKNRYESEiktaeSDLSME 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 288 KDRATLLSQMRVLESELEDQLV-----QHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMD---------DQAAEREHER 353
Cdd:PRK01156 269 LEKNNYYKELEERHMKIINDPVyknrnYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKklsvlqkdyNDYIKKKSRY 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 354 EEFQQEIQRLEGQlrqaarprppgprDSQCVQLDEEVELLQEKLRE------KLDGFNELVIKKDFADQqlliqEEEIKR 427
Cdd:PRK01156 349 DDLNNQILELEGY-------------EMDYNSYLKSIESLKKKIEEysknieRMSAFISEILKIQEIDP-----DAIKKE 410
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 428 LEETNASIQrqmvQLQEELEKQKKSMEELKEKEILKQENMGDLllttvsrsgldeAGCPMLPQGSSSRGPEAQPDVTEra 507
Cdd:PRK01156 411 LNEINVKLQ----DISSKVSSLNQRIRALRENLDELSRNMEML------------NGQSVCPVCGTTLGEEKSNHIIN-- 472
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568966951 508 llqHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKaEEIEQlhEVIEKLQSELSLMGPKVHEVSD 574
Cdd:PRK01156 473 ---HYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRK-EYLES--EEINKSINEYNKIESARADLED 533
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
160-465 |
2.08e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.09 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 160 NEEMAQAMQKQQELLERLREESAAKdrlalelhtaKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARE 239
Cdd:TIGR04523 358 NSEKQRELEEKQNEIEKLKKENQSY----------KQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE 427
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 240 LLTLKEEKSVLWNQKETLTNEakerEAALQEEVESLTRvqweSRKQSEKDRATLLSQMRVLESELEdqlvqhrgcaQLAE 319
Cdd:TIGR04523 428 IERLKETIIKNNSEIKDLTNQ----DSVKELIIKNLDN----TRESLETQLKVLSRSINKIKQNLE----------QKQK 489
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 320 EVATLKQQLAALDKH---LRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEK 396
Cdd:TIGR04523 490 ELKSKEKELKKLNEEkkeLEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKENLEKEIDEKNKE 569
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 397 LrEKLDGFNELVIKKDFADQQLLIQEE--------EIKRLEETNASIQRQMVQLQEE---LEKQKKSMEELKEKeiLKQE 465
Cdd:TIGR04523 570 I-EELKQTQKSLKKKQEEKQELIDQKEkekkdlikEIEEKEKKISSLEKELEKAKKEnekLSSIIKNIKSKKNK--LKQE 646
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
135-467 |
2.19e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 2.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 135 ALDSSKQLEEARQLHRCVER--EFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEAL 212
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKaeEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 213 GKKEEseqqlILELEDLRKqLQQAARElltlKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRAt 292
Cdd:PTZ00121 1552 KKAEE-----LKKAEEKKK-AEEAKKA----EEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI- 1620
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 293 llsQMRVLESELEDQLVQHRGCAQLAEEVATLKQQlaaldKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAAR 372
Cdd:PTZ00121 1621 ---KAEELKKAEEEKKKVEQLKKKEAEEKKKAEEL-----KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAE 1692
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 373 PRPPGPRDSQCVQLDEEVELLQEKLREKLDGFNElvIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKS 452
Cdd:PTZ00121 1693 ALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE--ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
|
330
....*....|....*
gi 568966951 453 MEELKEKEILKQENM 467
Cdd:PTZ00121 1771 EEIRKEKEAVIEEEL 1785
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
137-467 |
3.37e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 42.41 E-value: 3.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 137 DSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKD-------RLALELHTAKGLLEGFKVEKVDLQ 209
Cdd:pfam15921 423 DRNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLEstkemlrKVVEELTAKKMTLESSERTVSDLT 502
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 210 EALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWN-QKETltnEAKEREAALQEEVESLTRVQWESRKQSEK 288
Cdd:pfam15921 503 ASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNvQTEC---EALKLQMAEKDKVIEILRQQIENMTQLVG 579
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 289 DRATLLSQMRV----LESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLE 364
Cdd:pfam15921 580 QHGRTAGAMQVekaqLEKEINDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLL 659
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 365 GQLRQAArprppgprdSQCVQLDEEVELLQEKLREKLDGF----NELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMV 440
Cdd:pfam15921 660 NEVKTSR---------NELNSLSEDYEVLKRNFRNKSEEMetttNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAM 730
|
330 340
....*....|....*....|....*..
gi 568966951 441 QLQEELEKQKKSMEELKEKEILKQENM 467
Cdd:pfam15921 731 GMQKQITAKRGQIDALQSKIQFLEEAM 757
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
122-247 |
3.48e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 3.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 122 QSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAKDRLALELHTAKGLLEGF 201
Cdd:TIGR02168 855 ESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568966951 202 KVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEK 247
Cdd:TIGR02168 935 EVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENK 980
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
161-547 |
3.55e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 161 EEMAQAMQKQQEL---LERLREESAAKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQ-- 235
Cdd:pfam01576 233 ELRAQLAKKEEELqaaLARLEEETAQKNNALKKIRELEAQISELQEDLESERAARNKAEKQRRDLGEELEALKTELEDtl 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 236 ---AARELLTLKEEKSVLwNQKETLTNEAKEREAALQE-------EVESLTrvqwESRKQSEKDRATLLSQMRVLESELE 305
Cdd:pfam01576 313 dttAAQQELRSKREQEVT-ELKKALEEETRSHEAQLQEmrqkhtqALEELT----EQLEQAKRNKANLEKAKQALESENA 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 306 DQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCV- 384
Cdd:pfam01576 388 ELQAELRTLQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKNIKLSKDVSSLe 467
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 385 -QLDEEVELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEikrlEETNASIQRQMVQLQEELEKQKKSMEELKEKEILK 463
Cdd:pfam01576 468 sQLQDTQELLQEETRQKLNLSTRLRQLEDERNSLQEQLEEE----EEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEAL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 464 QENMGDL---LLTTVSRSGLDEAGCPMLpqgsssrgpeaqpDVTERALLQHENEVVhrrnSEIDELKSLIENLQENQRQL 540
Cdd:pfam01576 544 EEGKKRLqreLEALTQQLEEKAAAYDKL-------------EKTKNRLQQELDDLL----VDLDHQRQLVSNLEKKQKKF 606
|
....*..
gi 568966951 541 QKDKAEE 547
Cdd:pfam01576 607 DQMLAEE 613
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
201-563 |
3.61e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 3.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 201 FKVEKVDLQEALGKKEESEQQLILELEDLRKQLQ---QAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTR 277
Cdd:TIGR04523 178 LEKEKLNIQKNIDKIKNKLLKLELLLSNLKKKIQknkSLESQISELKKQNNQLKDNIEKKQQEINEKTTEISNTQTQLNQ 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 278 VQWE--------SRKQSEkdratlLSQMRVLESELEDQLvqhrgcAQLAEEVATLKQQLAA-LDKHLRSQRQFMDDQAAE 348
Cdd:TIGR04523 258 LKDEqnkikkqlSEKQKE------LEQNNKKIKELEKQL------NQLKSEISDLNNQKEQdWNKELKSELKNQEKKLEE 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 349 REHEREEFQQEIQRLEGQLRQAARPRPpgprdsqcvQLDEEVELLQEKLREKLdgfNEL-VIKKDfaDQQLLiqeEEIKR 427
Cdd:TIGR04523 326 IQNQISQNNKIISQLNEQISQLKKELT---------NSESENSEKQRELEEKQ---NEIeKLKKE--NQSYK---QEIKN 388
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 428 LEeTNASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLLLTTVSRsgldeagcpmlpQGSSSRGPEAQPDVTERA 507
Cdd:TIGR04523 389 LE-SQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIK------------NNSEIKDLTNQDSVKELI 455
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 568966951 508 LLQHENEVVHrRNSEIDELKSLIENLQENQRQLQK---DKAEEIEQLHEVIEKLQSELS 563
Cdd:TIGR04523 456 IKNLDNTRES-LETQLKVLSRSINKIKQNLEQKQKelkSKEKELKKLNEEKKELEEKVK 513
|
|
| Golgin_A5 |
pfam09787 |
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining ... |
164-310 |
3.68e-03 |
|
Golgin subfamily A member 5; Members of this family of proteins are involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterized: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1.
Pssm-ID: 462900 [Multi-domain] Cd Length: 305 Bit Score: 41.67 E-value: 3.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 164 AQAMQKQQELLERLREESAAKDrlaLELHTAKGL-LEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQaarELLT 242
Cdd:pfam09787 17 ARILQSKEKLIASLKEGSGVEG---LDSSTALTLeLEELRQERDLLREEIQKLRGQIQQLRTELQELEAQQQE---EAES 90
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568966951 243 LKEEKSVLwnqKETLTNEAKEREAAlQEEVESLTRVQWESRKQSEKDRATLLSQMRVLESELEDQLVQ 310
Cdd:pfam09787 91 SREQLQEL---EEQLATERSARREA-EAELERLQEELRYLEEELRRSKATLQSRIKDREAEIEKLRNQ 154
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
391-465 |
3.89e-03 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 40.57 E-value: 3.89e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568966951 391 ELLQEKLREKLDGFNELVIKKDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKSMEE-LKEKEILKQE 465
Cdd:pfam06785 79 ELDAEGFKILEETLEELQSEEERLEEELSQKEEELRRLTEENQQLQIQLQQISQDFAEFRLESEEqLAEKQLLINE 154
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
202-461 |
4.01e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.21 E-value: 4.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 202 KVEKVDLQEAL---GKKEESEQqlilELEDLRKQLQQAARELLTLKEEksvLWNQKETLTNEAKER---------EAALQ 269
Cdd:PRK11281 59 KLVQQDLEQTLallDKIDRQKE----ETEQLKQQLAQAPAKLRQAQAE---LEALKDDNDEETRETlstlslrqlESRLA 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 270 EEVESLTRVQWE----------SRKQSEKDRATLLS-QMRVLesELEDQL--VQHRGCAQLAEEVATLKQQLAALDKHLR 336
Cdd:PRK11281 132 QTLDQLQNAQNDlaeynsqlvsLQTQPERAQAALYAnSQRLQ--QIRNLLkgGKVGGKALRPSQRVLLQAEQALLNAQND 209
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 337 SQRQFMDDQAAEREHEREefqqeiQRLEGQLRQAarprppgprdsqcvQLDEEVELLQEKLREK-LDGFNELVikkdfad 415
Cdd:PRK11281 210 LQRKSLEGNTQLQDLLQK------QRDYLTARIQ--------------RLEHQLQLLQEAINSKrLTLSEKTV------- 262
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 568966951 416 QQLLIQEEEIKrlEETNASIQRQM---VQLQEELEKQKKSMEELKEKEI 461
Cdd:PRK11281 263 QEAQSQDEAAR--IQANPLVAQELeinLQLSQRLLKATEKLNTLTQQNL 309
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
1252-1581 |
4.70e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 4.70e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1252 QLRMTHLQNQEKLQQLCAALTSTEARGSQREHQLRRQVEllayKVEQEKCIANELQKTLSKEQETASDVRKRlVVEQNAV 1331
Cdd:pfam17380 281 QKAVSERQQQEKFEKMEQERLRQEKEEKAREVERRRKLE----EAEKARQAEMDRQAAIYAEQERMAMERER-ELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1332 QDLKSELHACKQENTSLlesldkvqqEVLRLRAvldgkekelkvvLEELESERGKGQALQAQQEEQQLRYLQREGQSSRA 1411
Cdd:pfam17380 356 EERKRELERIRQEEIAM---------EISRMRE------------LERLQMERQQKNERVRQELEAARKVKILEEERQRK 414
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1412 LEELKLSLEKQLAQNNQLcvalKHERAAKDNLQKELQIEASRCEAllaQEKGQLSELQKSLEAERSRSLELSEALQHERL 1491
Cdd:pfam17380 415 IQQQKVEMEQIRAEQEEA----RQREVRRLEEERAREMERVRLEE---QERQQQVERLRQQEEERKRKKLELEKEKRDRK 487
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1492 LTEQLSRN--SQEACARQETQVQHALLRKL-------------KAEKTRALELEAMLEKVQKQAAHTQQQLEAQAQERCV 1556
Cdd:pfam17380 488 RAEEQRRKilEKELEERKQAMIEEERKRKLlekemeerqkaiyEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSR 567
|
330 340
....*....|....*....|....*
gi 568966951 1557 ELRREKERELEIQRQRDEHKIEQLQ 1581
Cdd:pfam17380 568 LEAMEREREMMRQIVESEKARAEYE 592
|
|
| PRK10929 |
PRK10929 |
putative mechanosensitive channel protein; Provisional |
1262-1515 |
4.87e-03 |
|
putative mechanosensitive channel protein; Provisional
Pssm-ID: 236798 [Multi-domain] Cd Length: 1109 Bit Score: 41.96 E-value: 4.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1262 EKLQQLCAALTS-TEARGSQREHQLRRQVellaykVEQEKCIANELQKTLSKEQETASDVRKRLvveqnAVQDLKSELha 1340
Cdd:PRK10929 45 EIVEALQSALNWlEERKGSLERAKQYQQV------IDNFPKLSAELRQQLNNERDEPRSVPPNM-----STDALEQEI-- 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1341 cKQENTSLLESLDKVQQEVLRLRAVLD------GKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREGQSSRA-LE 1413
Cdd:PRK10929 112 -LQVSSQLLEKSRQAQQEQDRAREISDslsqlpQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESAALKAlVD 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1414 ELKLSlekQLAQNN-QLCVALKHERAAKDNLQKELQIEASRC--------EA--------LLAQEKGQLSE-LQKSLEAE 1475
Cdd:PRK10929 191 ELELA---QLSANNrQELARLRSELAKKRSQQLDAYLQALRNqlnsqrqrEAeralesteLLAEQSGDLPKsIVAQFKIN 267
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568966951 1476 RSRSLELSEALQHERLLTEQlsrnsQEACARQETQVQHAL 1515
Cdd:PRK10929 268 RELSQALNQQAQRMDLIASQ-----QRQAASQTLQVRQAL 302
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1155-1385 |
5.08e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 5.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1155 SQALSEVTTDKGE-KESLETHLTWSEELLRAIQEVFAR----EQEKAELQPRpYGSNLGDYNSLVQRLEKVIQEQGD--- 1226
Cdd:TIGR02168 294 ANEISRLEQQKQIlRERLANLERQLEELEAQLEELESKldelAEELAELEEK-LEELKEELESLEAELEELEAELEEles 372
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1227 -PQKVQDHL--CLSDRSSLLAEIQALRAQLRmthlQNQEKLQQLCAALTSTEARGSQREHQLRR-QVELLAYKVEQEKCI 1302
Cdd:TIGR02168 373 rLEELEEQLetLRSKVAQLELQIASLNNEIE----RLEARLERLEDRRERLQQEIEELLKKLEEaELKELQAELEELEEE 448
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1303 ANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSELHACKQENTSL---LESLDKVQQEVLRLRAVLDGKEKELKVVLEE 1379
Cdd:TIGR02168 449 LEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLerlQENLEGFSEGVKALLKNQSGLSGILGVLSEL 528
|
....*.
gi 568966951 1380 LESERG 1385
Cdd:TIGR02168 529 ISVDEG 534
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
115-452 |
5.34e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.87 E-value: 5.34e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 115 QPIRRVYQSLSTAVEGLL----------EMALDSSKQLEEARQLHRCVEREFRHRNEemAQAMQKQQELLERLREESA-- 182
Cdd:PRK04863 810 QKLQRLHQAFSRFIGSHLavafeadpeaELRQLNRRRVELERALADHESQEQQQRSQ--LEQAKEGLSALNRLLPRLNll 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 183 AKDRLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLIL------ELEDLRKQLQQAARELLTLKeeksvlwNQKET 256
Cdd:PRK04863 888 ADETLADRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVlqsdpeQFEQLKQDYQQAQQTQRDAK-------QQAFA 960
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 257 LTnEAKEREAAL--QEEVESLTrvqwESRKQSEKDRATLLsQMRVLESELEDQLVQHRgcAQLAEEvatlKQQLAALDKH 334
Cdd:PRK04863 961 LT-EVVQRRAHFsyEDAAEMLA----KNSDLNEKLRQRLE-QAEQERTRAREQLRQAQ--AQLAQY----NQVLASLKSS 1028
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 335 LRSQRQFMDDqaaerehereeFQQEIQRLEgqlrqaarprppgprdsqcVQLDEEVEllqEKLREKLDGFNELVI----K 410
Cdd:PRK04863 1029 YDAKRQMLQE-----------LKQELQDLG-------------------VPADSGAE---ERARARRDELHARLSanrsR 1075
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568966951 411 KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQEELEKQKKS 452
Cdd:PRK04863 1076 RNQLEKQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAG 1117
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
117-647 |
5.35e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 5.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 117 IRRVYQSLSTAVEGLLEMALDSSKQLEEARQ-LHRCVEREFRHRNEEmAQAMQKQQELLERLREESAAKDRLALELHTAK 195
Cdd:COG4913 368 LAALGLPLPASAEEFAALRAEAAALLEALEEeLEALEEALAEAEAAL-RDLRRELRELEAEIASLERRKSNIPARLLALR 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 196 GLLEgfkvekvdlqEALGKKEeseqqlilelEDLRkqlqqAARELLTLKEEKS--------VLWNQKETLTNEAkEREAA 267
Cdd:COG4913 447 DALA----------EALGLDE----------AELP-----FVGELIEVRPEEErwrgaierVLGGFALTLLVPP-EHYAA 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 268 LQEEVESL---TRVQWE-------SRKQSEKDRATLLSQMRVLESELED---QLVQHRGCAQLAEEVATLKQQ-----LA 329
Cdd:COG4913 501 ALRWVNRLhlrGRLVYErvrtglpDPERPRLDPDSLAGKLDFKPHPFRAwleAELGRRFDYVCVDSPEELRRHpraitRA 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 330 ALDKHLRSQRQfMDDQAAEREH---------EREEFQQEIQRLEGQLRQAarprppgprDSQCVQLDEEVELLQEKLR-- 398
Cdd:COG4913 581 GQVKGNGTRHE-KDDRRRIRSRyvlgfdnraKLAALEAELAELEEELAEA---------EERLEALEAELDALQERREal 650
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 399 EKLDGFNELVIKKDFADQQLLIQEEEIKRLEETN---ASIQRQMVQLQEELEKQKKSMEELKEKEILKQENMGDLL-LTT 474
Cdd:COG4913 651 QRLAEYSWDEIDVASAEREIAELEAELERLDASSddlAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEeELD 730
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 475 VSRSGLDEAgcpmlpqgsssrgpEAQPDVTERALLQHENEVVHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEV 554
Cdd:COG4913 731 ELQDRLEAA--------------EDLARLELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAF 796
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 555 IEKLQSELSLMGPKVHEVSDPQAgslhsELACLRGEGLggqalrselqaaQAAKEVFGQLLADQAHghsQALEALQQRLQ 634
Cdd:COG4913 797 NREWPAETADLDADLESLPEYLA-----LLDRLEEDGL------------PEYEERFKELLNENSI---EFVADLLSKLR 856
|
570
....*....|...
gi 568966951 635 DAEEVAARHLAEL 647
Cdd:COG4913 857 RAIREIKERIDPL 869
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
204-371 |
5.44e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.35 E-value: 5.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 204 EKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNE---AKEREAALQEEVESLTRVQW 280
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEiaeAEAEIEERREELGERARALY 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 281 ESRKQSE--------KDRATLLSQMRVLESELEDQlvqhrgcAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHE 352
Cdd:COG3883 97 RSGGSVSyldvllgsESFSDFLDRLSALSKIADAD-------ADLLEELKADKAELEAKKAELEAKLAELEALKAELEAA 169
|
170
....*....|....*....
gi 568966951 353 REEFQQEIQRLEGQLRQAA 371
Cdd:COG3883 170 KAELEAQQAEQEALLAQLS 188
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
117-430 |
6.00e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.42 E-value: 6.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 117 IRRVYQSLSTAVEGLLEMALDSSKQLEEARQLHRCVEREFRHRNEEMAQAMQKQQEL-------LERLREESAAKDRLAL 189
Cdd:pfam07888 78 LESRVAELKEELRQSREKHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELeediktlTQRVLERETELERMKE 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 190 ELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNqketLTNEAKEREAALQ 269
Cdd:pfam07888 158 RAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQ----KLTTAHRKEAENE 233
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 270 EEVESLTRVQwESRKQSEKDRATLLSQMRVLESEledqlvQHRGCAQLAE---EVATLKQQLAALDKHLR-------SQR 339
Cdd:pfam07888 234 ALLEELRSLQ-ERLNASERKVEGLGEELSSMAAQ------RDRTQAELHQarlQAAQLTLQLADASLALRegrarwaQER 306
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 340 QFMDDQAAEREHEREEFQQEIQRLEGQL------RQAARPRPPGPRDSQCVQLDEEVELLQEkLREKLDgfnelVIKKDF 413
Cdd:pfam07888 307 ETLQQSAEADKDRIEKLSAELQRLEERLqeermeREKLEVELGREKDCNRVQLSESRRELQE-LKASLR-----VAQKEK 380
|
330
....*....|....*....
gi 568966951 414 ADQQLLIQE--EEIKRLEE 430
Cdd:pfam07888 381 EQLQAEKQEllEYIRQLEQ 399
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
225-336 |
6.37e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.61 E-value: 6.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 225 ELEDLRKQLQQAARELLTLKEEKSVLwnqketltneAKEREAALQEEVESLTRVQWESRKQSEKDRAtLLSQMRVLESEL 304
Cdd:COG0542 412 ELDELERRLEQLEIEKEALKKEQDEA----------SFERLAELRDELAELEEELEALKARWEAEKE-LIEEIQELKEEL 480
|
90 100 110
....*....|....*....|....*....|..
gi 568966951 305 EDqlvQHRGCAQLAEEVATLKQQLAALDKHLR 336
Cdd:COG0542 481 EQ---RYGKIPELEKELAELEEELAELAPLLR 509
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
1101-1474 |
6.51e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 41.75 E-value: 6.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1101 AMKEKEIHAKQMKALLQmvfdeshQILALSESQDPSSALNKGEprdpLDGFPRDSQALSEVTTDKGEKESLETHLTWSEE 1180
Cdd:pfam12128 187 AMHSKEGKFRDVKSMIV-------AILEDDGVVPPKSRLNRQQ----VEHWIRDIQAIAGIMKIRPEFTKLQQEFNTLES 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1181 LLRAIQ----EVFAREQEKAELQPRpYGSNLGDYNSLVQRLEKVIQEQGDPQKvqdhlclSDRSSLLAEIQALRAQLRMT 1256
Cdd:pfam12128 256 AELRLShlhfGYKSDETLIASRQEE-RQETSAELNQLLRTLDDQWKEKRDELN-------GELSAADAAVAKDRSELEAL 327
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1257 hlqnQEKLQQLCAALTSTEARGSQREHQLRRQVEllaykvEQEKCIANELQKTLSKEQETasDVRKRLVVEQNA--VQDL 1334
Cdd:pfam12128 328 ----EDQHGAFLDADIETAAADQEQLPSWQSELE------NLEERLKALTGKHQDVTAKY--NRRRSKIKEQNNrdIAGI 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1335 KSELHACKQENTSLLESL-DKVQQEVLRLRAVLDGKEKELKVVLEELESERGKGQALQAQQEEQQLRYLQREgQSSRALE 1413
Cdd:pfam12128 396 KDKLAKIREARDRQLAVAeDDLQALESELREQLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQLE-NFDERIE 474
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568966951 1414 ELKLSLEKQLAQNNQLCVALKHERAAKDNLQKELQieasRCEALLAQEKGQLSELQKSLEA 1474
Cdd:pfam12128 475 RAREEQEAANAEVERLQSELRQARKRRDQASEALR----QASRRLEERQSALDELELQLFP 531
|
|
| PTZ00491 |
PTZ00491 |
major vault protein; Provisional |
1440-1578 |
7.49e-03 |
|
major vault protein; Provisional
Pssm-ID: 240439 [Multi-domain] Cd Length: 850 Bit Score: 41.54 E-value: 7.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1440 KDNLQKELQI-----------EASRCEALLAQE-KGQLsELQK---SLEAERSRS--LEL---SEALQHERLLTEQLSRN 1499
Cdd:PTZ00491 646 RDSLQKSVQLaieittksqeaAARHQAELLEQEaRGRL-ERQKmhdKAKAEEQRTklLELqaeSAAVESSGQSRAEALAE 724
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1500 SQEACARQETQVQHALLRklkAEKTRaLELEAMLEKVQKQaahtqqqleaqaqeRCVELRREKER-ELEIQRQRDEHKIE 1578
Cdd:PTZ00491 725 AEARLIEAEAEVEQAELR---AKALR-IEAEAELEKLRKR--------------QELELEYEQAQnELEIAKAKELADIE 786
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
132-465 |
7.81e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 41.29 E-value: 7.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 132 LEMALDSSKQLEEAR-QLHRCVER--EFRHRNEEMAQAMQKQQELLERLREESAAKDRLALEL-HTAKGLLEGFKVEKVD 207
Cdd:COG4717 124 LLQLLPLYQELEALEaELAELPERleELEERLEELRELEEELEELEAELAELQEELEELLEQLsLATEEELQDLAEELEE 203
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 208 LQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSV-------------------------------------- 249
Cdd:COG4717 204 LQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLkearlllliaaallallglggsllsliltiagvlflvl 283
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 250 -------LWNQKETLTNEAKEREAALQEEVESLTRVQWES-RKQSEKDRATLLSQMRVLESELEDQLVQHRGCAQLAEEv 321
Cdd:COG4717 284 gllallfLLLAREKASLGKEAEELQALPALEELEEEELEElLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEE- 362
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 322 ATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQ---EIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLQEKLR 398
Cdd:COG4717 363 LQLEELEQEIAALLAEAGVEDEEELRAALEQAEEYQElkeELEELEEQLEELLGELEELLEALDEEELEEELEELEEELE 442
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568966951 399 EKldgfnelvikkdfadqqlliqEEEIKRLEETNASIQRQMvqlqEELEKQKKSMEELKEKEILKQE 465
Cdd:COG4717 443 EL---------------------EEELEELREELAELEAEL----EQLEEDGELAELLQELEELKAE 484
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
193-462 |
7.85e-03 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 41.35 E-value: 7.85e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 193 TAKGLLEGFKVEKVDLQEALGK-KEESEQQLILELEDLRKQLQQAARELLTLKEEKSvlwnQKETLTNEAKER------- 264
Cdd:pfam10174 436 TALTTLEEALSEKERIIERLKEqREREDRERLEELESLKKENKDLKEKVSALQPELT----EKESSLIDLKEHasslass 511
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 265 -----------EAALQEEVESLTRVQWESRK-----QSEKDRATLLSQMRVLESELEDQLVQHRGC-AQLAEEVATLKQq 327
Cdd:pfam10174 512 glkkdsklkslEIAVEQKKEECSKLENQLKKahnaeEAVRTNPEINDRIRLLEQEVARYKEESGKAqAEVERLLGILRE- 590
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 328 lAALDKHLRSQR---------QFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRPPGPRDSQCVQLDEEVELLqEKLR 398
Cdd:pfam10174 591 -VENEKNDKDKKiaelesltlRQMKEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGAL-EKTR 668
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568966951 399 EKLDgfnelVIKKDFADQQLLIQEEEikrleetnasiqRQMVQLQEELEKQKKSMEELKEKEIL 462
Cdd:pfam10174 669 QELD-----ATKARLSSTQQSLAEKD------------GHLTNLRAERRKQLEEILEMKQEALL 715
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
141-465 |
7.96e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 41.49 E-value: 7.96e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 141 QLEEARQLHRCVEREFRHRNEEMAQAMQKQQELLERLREESAAkdrLALELHTAKGLLEGFKVEKVDLQEALGKKEESEQ 220
Cdd:TIGR00618 532 RGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSI---LTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAED 608
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 221 QLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLTNEAKEREAALQEEVESLTRVQWESRKQSEKDRATLLSQMrvl 300
Cdd:TIGR00618 609 MLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKM--- 685
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 301 ESELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREHEREEFQQEIQRLEGQLRQAARPRP----- 375
Cdd:TIGR00618 686 QSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARTeahfn 765
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 376 PGPRDSQCVQLDEEVELLQEKLREKLDGFNELVIK------------KDFADQQLLIQEEEIKRLEETNASIQRQMVQLQ 443
Cdd:TIGR00618 766 NNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLlktleaeigqeiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLG 845
|
330 340
....*....|....*....|..
gi 568966951 444 EELEKQKKSMEELKEKEILKQE 465
Cdd:TIGR00618 846 EITHQLLKYEECSKQLAQLTQE 867
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
198-691 |
8.09e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.20 E-value: 8.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 198 LEGFKVEKVDLQEALGKKEESEQQLILELEDLRKQLQQAARELLTLKEEKSVLWNQKETLtNEAKEREAALQEEVESLTr 277
Cdd:PRK03918 181 LEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEI-EELEKELESLEGSKRKLE- 258
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 278 vqwESRKQSEKDRATLLSQMRVLES------ELEDQLVQHRGCAQLAEEVATLKQQLAALDKHLRSQRQFMDDQAAEREH 351
Cdd:PRK03918 259 ---EKIRELEERIEELKKEIEELEEkvkelkELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEE 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 352 EREEFQQEIQRLEGQLRQAARprppgprdsqcvqLDEEVELLQEkLREKLDGFNELviKKDFADQQLLIQEEEIKRLEET 431
Cdd:PRK03918 336 KEERLEELKKKLKELEKRLEE-------------LEERHELYEE-AKAKKEELERL--KKRLTGLTPEKLEKELEELEKA 399
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 432 NASIQRQMVQLQEEL-------EKQKKSMEELKEKEI--------LKQENMGDLLlttvsRSGLDEAgcpmlpqgSSSRG 496
Cdd:PRK03918 400 KEEIEEEISKITARIgelkkeiKELKKAIEELKKAKGkcpvcgreLTEEHRKELL-----EEYTAEL--------KRIEK 466
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 497 PEAQPDVTERALLQHENEV--VHRRNSEIDELKSLIENLQENQRQLQKDKAEEIEQLHEVIEKLQSELslmgpkvhevsd 574
Cdd:PRK03918 467 ELKEIEEKERKLRKELRELekVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKL------------ 534
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 575 pqaGSLHSELACLRGEGLGGQALRSELQA----AQAAKEVFGQLLADQAHGHSQALEALQQRLQDAEEVAARH--LAELE 648
Cdd:PRK03918 535 ---IKLKGEIKSLKKELEKLEELKKKLAElekkLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYleLKDAE 611
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 568966951 649 HCVALREAEVEAMASQIQEFAATLKAKEAIIEQRDLEIDAVNK 691
Cdd:PRK03918 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEK 654
|
|
| YqiK |
COG2268 |
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; |
1473-1586 |
8.44e-03 |
|
Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown];
Pssm-ID: 441869 [Multi-domain] Cd Length: 439 Bit Score: 41.01 E-value: 8.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1473 EAERSRSLELSEALQHERLLTEQLSRNSQEACARQETQV---QHALLRKLKAEKTRALELEAMLEKVQ-KQAAHTQQQLE 1548
Cdd:COG2268 196 EIIRDARIAEAEAERETEIAIAQANREAEEAELEQEREIetaRIAEAEAELAKKKAEERREAETARAEaEAAYEIAEANA 275
|
90 100 110
....*....|....*....|....*....|....*...
gi 568966951 1549 AQAQERCVELrREKERELEIQRQRDEHKIEQLQRLVRE 1586
Cdd:COG2268 276 EREVQRQLEI-AEREREIELQEKEAEREEAELEADVRK 312
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
166-339 |
8.92e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.91 E-value: 8.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 166 AMQKQQELLERLREESAAKDRLA-------LELHTAKGLLEGFKVEKVDLQEALGKKEESEQQLILELEDLR-------- 230
Cdd:COG1579 1 AMPEDLRALLDLQELDSELDRLEhrlkelpAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEarikkyee 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 231 --------KQLQQAARELLTLKEEKSVLwnqkETLTNEAKEREAALQEEVESLTrvqwESRKQSEKDRATLLSQMRVLES 302
Cdd:COG1579 81 qlgnvrnnKEYEALQKEIESLKRRISDL----EDEILELMERIEELEEELAELE----AELAELEAELEEKKAELDEELA 152
|
170 180 190
....*....|....*....|....*....|....*..
gi 568966951 303 ELEDQLVQHRgcAQLAEEVATLKQQLAALDKHLRSQR 339
Cdd:COG1579 153 ELEAELEELE--AEREELAAKIPPELLALYERIRKRK 187
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
1293-1501 |
9.11e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 9.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1293 AYKVEQEKCIANELQKTLSKEQETASDVRKRLVVEQNAVQDLKSE--LHACKQENTSLLESLDKVQQEVLRLRAVLDGKE 1370
Cdd:COG3206 160 AYLEQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKngLVDLSEEAKLLLQQLSELESQLAEARAELAEAE 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568966951 1371 KELKVVLEELESERGKGQALQAQQEeqQLRYLQREGQSSRALEElklsLEKQLAQNNQLCVALKHERAA-KDNLQKELQI 1449
Cdd:COG3206 240 ARLAALRAQLGSGPDALPELLQSPV--IQQLRAQLAELEAELAE----LSARYTPNHPDVIALRAQIAAlRAQLQQEAQR 313
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 568966951 1450 EASRCEALLAQEKGQLSELQKSLEAERSRSLELSEALQHERLLTEQLSRNSQ 1501
Cdd:COG3206 314 ILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVARE 365
|
|
| |
