|
Name |
Accession |
Description |
Interval |
E-value |
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
391-660 |
2.22e-25 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 107.12 E-value: 2.22e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 391 LQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGee 470
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAG-- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 471 trkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAI 550
Cdd:COG2956 91 ---LLDRAEELLEKLLELDPDDAEALRLLAEIYEQ-EGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 551 LTAVTQKASAGAAkwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPD 630
Cdd:COG2956 167 LEKALKLDPDCAR--ALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
250 260 270
....*....|....*....|....*....|
gi 568983331 631 STySVFKVAAIQQILGRYSEAIAQYQLIIK 660
Cdd:COG2956 245 DD-LLLALADLLERKEGLEAALALLERQLR 273
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
425-700 |
1.53e-21 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 95.95 E-value: 1.53e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 425 LEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDAHMGKVFCYLGHYYR 504
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLY-----RRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYL 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 505 DvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtetalailtavtqkasagaakwAWLRRGLYHLKAGQHSQAV 584
Cdd:COG2956 88 K-AGLLDRAEELLEKLLELDPDDAE------------------------------------ALRLLAEIYEQEGDWEKAI 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 585 ADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKED 664
Cdd:COG2956 131 EVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPD 210
|
250 260 270
....*....|....*....|....*....|....*.
gi 568983331 665 YVPALKGLGECHLLLGKVAlvdfldgKAVDYVEQAL 700
Cdd:COG2956 211 YLPALPRLAELYEKLGDPE-------EALELLRKAL 239
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
2-673 |
5.55e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 93.22 E-value: 5.55e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 2 SSKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLA 81
Cdd:TIGR02917 18 GDQSPEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 82 SLYEKCNQvnakddlpgvYQKLLDLYESADRQKWCD--VCKKLVALYHQEKKHLEVARtwhRLIKTRQEDGADRqeLYEL 159
Cdd:TIGR02917 98 RAYLLQGK----------FQQVLDELPGKTLLDDEGaaELLALRGLAYLGLGQLELAQ---KSYEQALAIDPRS--LYAK 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 160 WrKLSQLLAEniEDQNNETQQMLLTAfenaldLADNIPSEDHQVLYRNFIQCLSKFPHETTKLKKAceemIAIYPtvqyp 239
Cdd:TIGR02917 163 L-GLAQLALA--ENRFDEARALIDEV------LTADPGNVDALLLKGDLLLSLGNIELALAAYRKA----IALRP----- 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 240 lEVICLYLIDSGSLTSEGH-----QYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESP-----VCIAGW 309
Cdd:TIGR02917 225 -NNIAVLLALATILIEAGEfeeaeKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPeylpaLLLAGA 303
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 310 CH-----------------------------LAEAQVKMHRPKEAILSCNQALKTIDN----FGASG------------- 343
Cdd:TIGR02917 304 SEyqlgnleqayqylnqilkyapnshqarrlLASIQLRLGRVDEAIATLSPALGLDPDdpaaLSLLGeaylalgdfekaa 383
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 344 ------GNLHQKNLCLRLKaEALLKLSDGaSSEEAVRTLDQVSDVDNTPG----LLVLQGLaclNTGAVDKATKIMEDLV 413
Cdd:TIGR02917 384 eylakaTELDPENAAARTQ-LGISKLSQG-DPSEAIADLETAAQLDPELGradlLLILSYL---RSGQFDKALAAAKKLE 458
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 414 TSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDaevaeyhyqlgltywfmgeetrKDKTKALTHFlkaARLDAHMG 493
Cdd:TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE----------------------PDFFPAAANL---ARIDIQEG 513
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 494 KVfcylghyyrDVAGDRnrargcYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWLRRglY 573
Cdd:TIGR02917 514 NP---------DDAIQR------FEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQ--Y 576
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 574 HLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIA 653
Cdd:TIGR02917 577 YLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT 656
|
730 740
....*....|....*....|
gi 568983331 654 QYQLIIKMKEDYVPALKGLG 673
Cdd:TIGR02917 657 SLKRALELKPDNTEAQIGLA 676
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
417-657 |
6.47e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 87.75 E-value: 6.47e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 417 PDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDAHMGKVF 496
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLG-----RYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 497 CYLGHYYRDvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtetalailtavtqkasagaakwAWLRRGLYHLK 576
Cdd:COG0457 80 NNLGLALQA-LGRYEEALEDYDKALELDPDDAE------------------------------------ALYNLGLALLE 122
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 577 AGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQ 656
Cdd:COG0457 123 LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLA 202
|
.
gi 568983331 657 L 657
Cdd:COG0457 203 L 203
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
487-681 |
3.49e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 82.36 E-value: 3.49e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 487 RLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtetalailtavtqkasagaakwA 566
Cdd:COG0457 2 ELDPDDAEAYNNLGLAYRR-LGRYEEAIEDYEKALELDPDDAE------------------------------------A 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 567 WLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILG 646
Cdd:COG0457 45 LYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG 124
|
170 180 190
....*....|....*....|....*....|....*
gi 568983331 647 RYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGK 681
Cdd:COG0457 125 RYDEAIEAYERALELDPDDADALYNLGIALEKLGR 159
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
565-723 |
5.98e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 81.98 E-value: 5.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 565 WAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQI 644
Cdd:COG0457 9 EAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 645 LGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKValvdfldgkavdyvEQALGYFTRALQHRADVSCLWKLVGDA 723
Cdd:COG0457 89 LGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRY--------------DEAIEAYERALELDPDDADALYNLGIA 153
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
278-893 |
8.57e-17 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 86.29 E-value: 8.57e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 278 LGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK-TIDNFGAsggnlhqknlcLRLK 356
Cdd:TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTaDPGNVDA-----------LLLK 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 357 AEALLKLSDGassEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKD 435
Cdd:TIGR02917 200 GDLLLSLGNI---ELALAAYRKAIALRpNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKN 276
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 436 YVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGE----ETRKDKT-KALTHFLKAARLDAHMgkvfcylghyyRDVAGDR 510
Cdd:TIGR02917 277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNleqaYQYLNQIlKYAPNSHQARRLLASI-----------QLRLGRV 345
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 511 NRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAkwAWLRRGLYHLKAGQHSQAVADLQAA 590
Cdd:TIGR02917 346 DEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAA--ARTQLGISKLSQGDPSEAIADLETA 423
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 591 LRADPK----------------------------------DCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVF 636
Cdd:TIGR02917 424 AQLDPElgradlllilsylrsgqfdkalaaakklekkqpdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAA 503
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 637 KVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKVAlvdfldgKAVDYVEQALGYFTRALQHRADVSCL 716
Cdd:TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEE-------EAVAWLEKAAELNPQEIEPALALAQY 576
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 717 WKLVGDACTCL---------HPVSPSKVHVhVLGALLGQKEGQEVLkkeellslggRCYGRALKLMSTSntwcdlGINYY 787
Cdd:TIGR02917 577 YLGKGQLKKALailneaadaAPDSPEAWLM-LGRAQLAAGDLNKAV----------SSFKKLLALQPDS------ALALL 639
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 788 RqvqhLAETGSSMSDLTELLEKslhcLKKAVRLDSNNhlhWNALGVVACYRGVGNYALAQHCFIKSIQAEQINAAAWTNL 867
Cdd:TIGR02917 640 L----LADAYAVMKNYAKAITS----LKRALELKPDN---TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFEL 708
|
650 660
....*....|....*....|....*..
gi 568983331 868 -GVLYLATENIEQAHEAFKMAQSLDPS 893
Cdd:TIGR02917 709 eGDLYLRQKDYPAAIQAYRKALKRAPS 735
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
370-594 |
1.60e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 81.31 E-value: 1.60e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 370 EEAVRTLDQVSDVDNTPGLLVLQ-GLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALE 448
Cdd:COG2956 59 DRAIRIHQKLLERDPDRAEALLElAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 449 KDAEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDA 528
Cdd:COG2956 139 LGPENAHAYCELAELY-----LEQGDYDEAIEALEKALKLDPDCARALLLLAELYLE-QGDYEEAIAALERALEQDPDYL 212
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 529 ESGAAAVDLSLELEDTETALAILTAVTQKASAGAakwAWLRRGLYHLKAGQHSQAVADLQAALRAD 594
Cdd:COG2956 213 PALPRLAELYEKLGDPEEALELLRKALELDPSDD---LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
507-712 |
1.37e-15 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 81.96 E-value: 1.37e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 507 AGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWL--------RRGLYHLKAG 578
Cdd:COG3914 13 AAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALlllaalleLAALLLQALG 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 579 QHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLI 658
Cdd:COG3914 93 RYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRA 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 568983331 659 IKMKEDYVPALKGLGECHLLLGKvalvdfldgkavdyVEQALGYFTRALQHRAD 712
Cdd:COG3914 173 LELDPDNAEALNNLGNALQDLGR--------------LEEAIAAYRRALELDPD 212
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
393-593 |
2.51e-15 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 76.97 E-value: 2.51e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 393 GLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetr 472
Cdd:COG0457 15 GLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALG---- 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 473 kDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILT 552
Cdd:COG0457 91 -RYEEALEDYDKALELDPDDAEALYNLGLALLE-LGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLE 168
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568983331 553 AVTQKASAGAAKWAWLRRGLYHLKAGQHSQAVADLQAALRA 593
Cdd:COG0457 169 KLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRK 209
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
562-912 |
7.05e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 73.22 E-value: 7.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 562 AAKWAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAI 641
Cdd:COG2956 6 AAALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQD 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 642 QQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKvalvdfldgkavdyVEQALGYFTRALQhradvsclwklvg 721
Cdd:COG2956 86 YLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD--------------WEKAIEVLERLLK------------- 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 722 dactclhpVSPSKVHVHvlgallgqkegqevlkkeellslggrcygralklmstsntwCDLGINYYRQVQhlaetgssms 801
Cdd:COG2956 139 --------LGPENAHAY-----------------------------------------CELAELYLEQGD---------- 159
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 802 dltelLEKSLHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAH 881
Cdd:COG2956 160 -----YDEAIEALEKALKLDPDCARALLLLAEL--YLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEAL 232
|
330 340 350
....*....|....*....|....*....|.
gi 568983331 882 EAFKMAQSLDPSYLLcWIGQALIAERVGSYD 912
Cdd:COG2956 233 ELLRKALELDPSDDL-LLALADLLERKEGLE 262
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
503-708 |
1.88e-13 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 71.10 E-value: 1.88e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 503 YRDVAGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKW----AWLRRGLYHLKAG 578
Cdd:COG4785 8 LLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPdlaqLYYERGVAYDSLG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 579 QHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLI 658
Cdd:COG4785 88 DYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKA 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 659 IKMKEDYVPALKGLGECHLLLG-KVALVDFLDGKAVDY-----VEQALGYFTRALQ 708
Cdd:COG4785 168 LELDPNDPERALWLYLAERKLDpEKALALLLEDWATAYllqgdTEEARELFKLALA 223
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
561-700 |
2.26e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 68.68 E-value: 2.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 561 GAAKWAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAA 640
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 641 IQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKVAlvdfldgKAVDYVEQAL 700
Cdd:COG4783 81 ALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPD-------EAIAALEKAL 133
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
388-529 |
1.34e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 72.33 E-value: 1.34e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 388 LLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFM 467
Cdd:COG3914 80 LLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRL 159
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568983331 468 GeetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAE 529
Cdd:COG3914 160 G-----RLEEAIAALRRALELDPDNAEALNNLGNALQD-LGRLEEAIAAYRRALELDPDNAD 215
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
389-527 |
1.71e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.98 E-value: 1.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 389 LVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMG 468
Cdd:COG4783 7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 469 eetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDND 527
Cdd:COG4783 87 -----DYDEALALLEKALKLDPEHPEAYLRLARAYRA-LGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
352-593 |
2.02e-12 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 68.49 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 352 CLRLKAEALLKLSDgasSEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVH 430
Cdd:COG0457 10 AYNNLGLAYRRLGR---YEEAIEDYEKALELDpDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLAL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 431 FTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDR 510
Cdd:COG0457 87 QALGRYEEALEDYDKALELDPDDAEALYNLGLALLELG-----RYDEAIEAYERALELDPDDADALYNLGIALEK-LGRY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 511 NRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWLRRGLYHLKAGQHSQAVADLQAA 590
Cdd:COG0457 161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240
|
...
gi 568983331 591 LRA 593
Cdd:COG0457 241 YQY 243
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
278-700 |
2.02e-12 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 72.04 E-value: 2.02e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 278 LGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKTidnfgasggnlHQKNLclrlka 357
Cdd:TIGR02917 471 LGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI-----------DPKNL------ 533
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 358 EALLKLSD----GASSEEAVRTLDQVSDVDNT---PGLLVLQGLacLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVH 430
Cdd:TIGR02917 534 RAILALAGlylrTGNEEEAVAWLEKAAELNPQeiePALALAQYY--LGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQ 611
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 431 FTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMgeetrKDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDR 510
Cdd:TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-----KNYAKAITSLKRALELKPDNTEAQIGLAQLLLA-AKRT 685
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 511 NRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKA-SAGAAkwawLRRGLYHLKAGQHSQAVADLQA 589
Cdd:TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRApSSQNA----IKLHRALLASGNTAEAVKTLEA 761
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 590 ALRADPKDCNCWESLGEAYLSRGgyttalksfmkaselnpdstysvfkvaaiqqilgRYSEAIAQYQLIIKMKEDYVPAL 669
Cdd:TIGR02917 762 WLKTHPNDAVLRTALAELYLAQK----------------------------------DYDKAIKHYQTVVKKAPDNAVVL 807
|
410 420 430
....*....|....*....|....*....|.
gi 568983331 670 KGLGechLLLGKVAlvdflDGKAVDYVEQAL 700
Cdd:TIGR02917 808 NNLA---WLYLELK-----DPRALEYAERAL 830
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
525-665 |
2.24e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 65.60 E-value: 2.24e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 525 DNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAakWAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESL 604
Cdd:COG4783 1 AACAEALYALAQALLLAGDYDEAEALLEKALELDPDNP--EAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568983331 605 GEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDY 665
Cdd:COG4783 79 GLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
420-669 |
4.10e-12 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 70.41 E-value: 4.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 420 AEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDAHM----GKV 495
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAllllAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 496 FCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtetalailtavtqkasagaakwAWLRRGLYHL 575
Cdd:COG3914 81 LELAALLLQA-LGRYEEALALYRRALALNPDNAE------------------------------------ALFNLGNLLL 123
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 576 KAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQY 655
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAY 203
|
250
....*....|....
gi 568983331 656 QLIIKMKEDYVPAL 669
Cdd:COG3914 204 RRALELDPDNADAH 217
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
570-700 |
1.10e-11 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 69.73 E-value: 1.10e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 570 RGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTY-----SVFKV----AA 640
Cdd:PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNrdkweSLLKVnrywLL 354
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 641 IQQ-----ILGRYSEAIAQYQLIIKMKEDYVPALKGLGEchlllgkVALVDFLDGKAVDYVEQAL 700
Cdd:PRK11447 355 IQQgdaalKANNLAQAERLYQQARQVDNTDSYAVLGLGD-------VAMARKDYAAAERYYQQAL 412
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
526-713 |
1.97e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 1.97e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 526 NDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLG 605
Cdd:COG3914 6 LLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAA 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 606 EAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKVAlv 685
Cdd:COG3914 86 LLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE-- 163
|
170 180 190
....*....|....*....|....*....|.
gi 568983331 686 dfldgKAVDYVEQALGY---FTRALQHRADV 713
Cdd:COG3914 164 -----EAIAALRRALELdpdNAEALNNLGNA 189
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
387-597 |
2.05e-11 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 68.48 E-value: 2.05e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 387 GLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWF 466
Cdd:COG3914 45 LLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLA 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 467 MGeetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtet 546
Cdd:COG3914 125 LG-----RLEEALAALRRALALNPDFAEAYLNLGEALRR-LGRLEEAIAALRRALELDPDNAE----------------- 181
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568983331 547 alailtavtqkasagaakwAWLRRGLYHLKAGQHSQAVADLQAALRADPKD 597
Cdd:COG3914 182 -------------------ALNNLGNALQDLGRLEEAIAAYRRALELDPDN 213
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
582-700 |
4.65e-11 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 61.56 E-value: 4.65e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 582 QAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKM 661
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 568983331 662 KEDYVPALKGLGECHLLLGKVAlvdfldgKAVDYVEQAL 700
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA-------EAIAAWQKLL 112
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-551 |
1.10e-10 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 63.98 E-value: 1.10e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 263 KLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNfgas 342
Cdd:COG2956 33 EALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPD---- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 343 ggnlhqknlclrlKAEALLKLsdgasseeavrtldqvsdvdntpgllvlqGLACLNTGAVDKATKIMEDLVTSYPDLAEA 422
Cdd:COG2956 109 -------------DAEALRLL-----------------------------AEIYEQEGDWEKAIEVLERLLKLGPENAHA 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 423 HALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDAHMGKVFCYLGHY 502
Cdd:COG2956 147 YCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELY-----LEQGDYEEAIAALERALEQDPDYLPALPRLAEL 221
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 568983331 503 YRDvAGDRNRARGCYRKAFELDDNDAESGAAAvDLSLELEDTETALAIL 551
Cdd:COG2956 222 YEK-LGDPEEALELLRKALELDPSDDLLLALA-DLLERKEGLEAALALL 268
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
411-592 |
1.12e-10 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 63.01 E-value: 1.12e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 411 DLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGEEtrkdkTKALTHFLKAARLDA 490
Cdd:COG4785 64 DRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDY-----DAALEDFDRALELDP 138
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 491 HMGKVFCYLG--HYYRdvaGDRNRARGCYRKAFELDDNDAESgAAAVDLSLELEDTETALAILTAVtqkasagaakWAWL 568
Cdd:COG4785 139 DYAYAYLNRGiaLYYL---GRYELAIADLEKALELDPNDPER-ALWLYLAERKLDPEKALALLLED----------WATA 204
|
170 180
....*....|....*....|....
gi 568983331 569 rrglyHLKAGQHSQAVADLQAALR 592
Cdd:COG4785 205 -----YLLQGDTEEARELFKLALA 223
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
591-723 |
2.31e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.33 E-value: 2.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 591 LRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALK 670
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568983331 671 GLGECHLLLGKvalvdfldgkavdyVEQALGYFTRALQHRADVSCLWKLVGDA 723
Cdd:COG0457 81 NLGLALQALGR--------------YEEALEDYDKALELDPDDAEALYNLGLA 119
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
404-529 |
4.30e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 58.86 E-value: 4.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 404 KATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFL 483
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAG-----DTEEAEELLE 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 568983331 484 KAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAE 529
Cdd:COG4235 76 RALALDPDNPEALYLLGLAAFQ-QGDYAEAIAAWQKLLALLPADAP 120
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
451-631 |
5.09e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 59.05 E-value: 5.09e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 451 AEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAEs 530
Cdd:COG4783 1 AACAEALYALAQALLLAG-----DYDEAEALLEKALELDPDNPEAFALLGEILLQ-LGDLDEAIVLLHEALELDPDEPE- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 531 gaaavdlsleledtetalailtavtqkasagaakwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLS 610
Cdd:COG4783 74 -----------------------------------ARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRA 118
|
170 180
....*....|....*....|.
gi 568983331 611 RGGYTTALKSFMKASELNPDS 631
Cdd:COG4783 119 LGRPDEAIAALEKALELDPDD 139
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
807-912 |
9.04e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 60.79 E-value: 9.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG0457 24 YEEAIEDYEKALELDPDDAEALYNLGLA--YLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDK 101
|
90 100
....*....|....*....|....*.
gi 568983331 887 AQSLDPSYLLCWIGQALIAERVGSYD 912
Cdd:COG0457 102 ALELDPDDAEALYNLGLALLELGRYD 127
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
353-564 |
9.32e-10 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 63.09 E-value: 9.32e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 353 LRLKAEALLKLSDgasSEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHF 431
Cdd:COG3914 81 LELAALLLQALGR---YEEALALYRRALALNpDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALR 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 432 TKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYwfmgeETRKDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDVAGDRN 511
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNAL-----QDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEV 232
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 568983331 512 RARgcYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAK 564
Cdd:COG3914 233 YDR--FEELLAALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAAAAP 283
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
566-668 |
9.51e-10 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 57.71 E-value: 9.51e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 566 AWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQIL 645
Cdd:COG4235 19 GWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQ 98
|
90 100
....*....|....*....|...
gi 568983331 646 GRYSEAIAQYQLIIKMKEDYVPA 668
Cdd:COG4235 99 GDYAEAIAAWQKLLALLPADAPA 121
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
512-656 |
1.41e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 58.05 E-value: 1.41e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 512 RARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWLRRGLYHLKAGQHSQAVADLQAAL 591
Cdd:COG5010 2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 592 RADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQ 656
Cdd:COG5010 82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQ 146
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
420-1154 |
2.05e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 62.02 E-value: 2.05e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 420 AEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGE------ETRK------DKTKALTHFLKAAR 487
Cdd:TIGR02917 22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDyaaaekELRKalslgyPKNQVLPLLARAYL 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 488 LDAHMGKVFCYLG-------------HYYRDVA----GDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAI 550
Cdd:TIGR02917 102 LQGKFQQVLDELPgktllddegaaelLALRGLAylglGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL 181
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 551 LTAVTQkASAGAAKwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPD 630
Cdd:TIGR02917 182 IDEVLT-ADPGNVD-ALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN 259
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 631 STYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKvalvdfldgkavdyVEQALGYFTRALQH- 709
Cdd:TIGR02917 260 SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGN--------------LEQAYQYLNQILKYa 325
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 710 -------RADVSCLWKL--VGDACTclhpvspskvhvhVLGALLGQKEgqevlKKEELLSLGGRCYgraLKLMSTSNtwc 780
Cdd:TIGR02917 326 pnshqarRLLASIQLRLgrVDEAIA-------------TLSPALGLDP-----DDPAALSLLGEAY---LALGDFEK--- 381
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 781 dlGINYYRQVQHL------AETGSSMSDL-TELLEKSLHCLKKAVRLDSNNHLHWNALGVVACYRGVGNYALAQhcfIKS 853
Cdd:TIGR02917 382 --AAEYLAKATELdpenaaARTQLGISKLsQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA---AKK 456
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 854 IQAEQI-NAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQALIAERVGsydtmdlfrhttelsmHTEGAIG 932
Cdd:TIGR02917 457 LEKKQPdNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEG----------------NPDDAIQ 520
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 933 YAYWVCTTlqDKSNRETELYQYNILEMNAIPAAqgVLCKYVERIQNSASAFTMLGYLNEHLQLKKEAAEAYQRATTLLHS 1012
Cdd:TIGR02917 521 RFEKVLTI--DPKNLRAILALAGLYLRTGNEEE--AVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA 596
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1013 AEDQNTYNVAVrnwGRLLCSIGDYDRAIQAFKStpLVELEDIIGFALAL------FMKGlYKESGSAYERALAVcKSEQD 1086
Cdd:TIGR02917 597 APDSPEAWLML---GRAQLAAGDLNKAVSSFKK--LLALQPDSALALLLladayaVMKN-YAKAITSLKRALEL-KPDNT 669
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 1087 KAHILtaMAIVEYKQGKMDAAKSfLFKCSILKEPTAESLQALCAlGLAMRDATLsKAALNELLKHIKR 1154
Cdd:TIGR02917 670 EAQIG--LAQLLLAAKRTESAKK-IAKSLQKQHPKAALGFELEG-DLYLRQKDY-PAAIQAYRKALKR 732
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
818-1079 |
3.73e-09 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 58.86 E-value: 3.73e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 818 VRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLC 897
Cdd:COG0457 1 LELDPDDAEAYNNLGLA--YRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 898 WIGQALIAERVGSYdtmdlfrhttelsmhtEGAIgyaywvcttlqdksnretELYQyNILEMNAipaaqgvlckyveriq 977
Cdd:COG0457 79 LNNLGLALQALGRY----------------EEAL------------------EDYD-KALELDP---------------- 107
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 978 NSASAFTMLGYLNEHLQLKKEAAEAYQRATTLlhsaedQNTYNVAVRNWGRLLCSIGDYDRAIQAFKSTPLVELEDIIGF 1057
Cdd:COG0457 108 DDAEALYNLGLALLELGRYDEAIEAYERALEL------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAA 181
|
250 260
....*....|....*....|..
gi 568983331 1058 ALALFMKGLYKESGSAYERALA 1079
Cdd:COG0457 182 ALGEAALALAAAEVLLALLLAL 203
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
573-664 |
3.96e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 54.79 E-value: 3.96e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 573 YHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKsFMKASELNPDSTYSVFKVAAIQQILGRYSEAI 652
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79
|
90
....*....|..
gi 568983331 653 AQYQLIIKMKED 664
Cdd:COG3063 80 AYLERALELDPS 91
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
263-450 |
5.15e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 58.97 E-value: 5.15e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 263 KLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNFGAS 342
Cdd:COG2956 101 KLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARA 180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 343 ggnlhqknlcLRLKAEALLKLSDgasSEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAE 421
Cdd:COG2956 181 ----------LLLLAELYLEQGD---YEEAIAALERALEQDpDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDL 247
|
170 180
....*....|....*....|....*....
gi 568983331 422 AHALeGRVHFTKKDYVQAEVSFQRALEKD 450
Cdd:COG2956 248 LLAL-ADLLERKEGLEAALALLERQLRRH 275
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
18-653 |
6.22e-09 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 60.48 E-value: 6.22e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQV------- 90
Cdd:TIGR02917 273 QKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVdeaiatl 352
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 91 NAKDDLPGVYQKLLDLYESAdrqkwcdvckklvalYHQEKKHLEVARTWHRLIKTRQEDGADRQELyelwrKLSQLLaen 170
Cdd:TIGR02917 353 SPALGLDPDDPAALSLLGEA---------------YLALGDFEKAAEYLAKATELDPENAAARTQL-----GISKLS--- 409
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 171 iedQNNETQQmlLTAFENALDLADNiPSEDHQVLYRNFIQclskfPHETTKLKKACEEMIAIYPTVQYPLEVICLYLIDS 250
Cdd:TIGR02917 410 ---QGDPSEA--IADLETAAQLDPE-LGRADLLLILSYLR-----SGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGK 478
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 251 GSLtSEGHQYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCN 330
Cdd:TIGR02917 479 GDL-AKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLE 557
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 331 QALKtidnfgasggnLHQKNLCLRLK-AEALLKLSDGASSEEAVRTLdqVSDVDNTPGLLVLQGLACLNTGAVDKATKIM 409
Cdd:TIGR02917 558 KAAE-----------LNPQEIEPALAlAQYYLGKGQLKKALAILNEA--ADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 410 EDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYhyQLGLTYWFMgEETRKDKTKALTHFLKAARLD 489
Cdd:TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA--QIGLAQLLL-AAKRTESAKKIAKSLQKQHPK 701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 490 AHMGKVFcyLGHYYRdVAGDRNRARGCYRKAFELDDND----------------AESGAAAVD-LSLELED--TETALAI 550
Cdd:TIGR02917 702 AALGFEL--EGDLYL-RQKDYPAAIQAYRKALKRAPSSqnaiklhrallasgntAEAVKTLEAwLKTHPNDavLRTALAE 778
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 551 LtAVTQKASAGAAK------------------WAWLRRGLYHLKAGQHSQAvadlqaALRADPKDCNCWESLGEAYLSRG 612
Cdd:TIGR02917 779 L-YLAQKDYDKAIKhyqtvvkkapdnavvlnnLAWLYLELKDPRALEYAER------ALKLAPNIPAILDTLGWLLVEKG 851
|
650 660 670 680
....*....|....*....|....*....|....*....|.
gi 568983331 613 GYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIA 653
Cdd:TIGR02917 852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
353-490 |
1.09e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 55.20 E-value: 1.09e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 353 LRLKAEALLKLSDgasSEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHF 431
Cdd:COG4783 7 LYALAQALLLAGD---YDEAEALLEKALELDpDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 432 TKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDA 490
Cdd:COG4783 84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG-----RPDEAIAALEKALELDP 137
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
811-912 |
1.13e-08 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 54.63 E-value: 1.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 811 LHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSL 890
Cdd:COG4235 3 IARLRQALAANPNDAEGWLLLGRA--YLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80
|
90 100
....*....|....*....|..
gi 568983331 891 DPSYLLCWIGQALIAERVGSYD 912
Cdd:COG4235 81 DPDNPEALYLLGLAAFQQGDYA 102
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
574-660 |
1.75e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 53.84 E-value: 1.75e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 574 HLKAGQHSQAVADLQAALRADPKDC---NCWESLGEAYLSRGGYTTALKSFMKASELNPDSTY---SVFKVAAIQQILGR 647
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLKRYPNSPlapDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKapdALLKLGLSYLELGD 82
|
90
....*....|...
gi 568983331 648 YSEAIAQYQLIIK 660
Cdd:COG1729 83 YDKARATLEELIK 95
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
306-513 |
2.13e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.47 E-value: 2.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 306 IAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNFGASGGNLhqknlclrlkAEALLKLSDgasSEEAVRTLDQV--SDVD 383
Cdd:COG3914 78 AALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNL----------GNLLLALGR---LEEALAALRRAlaLNPD 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 384 NTPGLLVLqGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLT 463
Cdd:COG3914 145 FAEAYLNL-GEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFA 223
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568983331 464 YWFMGEETRKDKtkaLTHFLKAARLDAHMGKVFCYlgHYYRDVAGDRNRA 513
Cdd:COG3914 224 LRQACDWEVYDR---FEELLAALARGPSELSPFAL--LYLPDDDPAELLA 268
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
807-905 |
2.82e-08 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 58.08 E-value: 2.82e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG3914 94 YEEALALYRRALALNPDNAEALFNLGNL--LLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRR 171
|
90 100
....*....|....*....|.
gi 568983331 887 AQSLDPSY--LLCWIGQALIA 905
Cdd:COG3914 172 ALELDPDNaeALNNLGNALQD 192
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
420-597 |
3.07e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 53.66 E-value: 3.07e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 420 AEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDAHMGKVFCYL 499
Cdd:COG4783 4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLG-----DLDEAIVLLHEALELDPDEPEARLNL 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 500 GHYYRDvAGDRNRARGCYRKAFELDDNDAEsgaaavdlsleledtetalailtavtqkasagaakwAWLRRGLYHLKAGQ 579
Cdd:COG4783 79 GLALLK-AGDYDEALALLEKALKLDPEHPE------------------------------------AYLRLARAYRALGR 121
|
170
....*....|....*...
gi 568983331 580 HSQAVADLQAALRADPKD 597
Cdd:COG4783 122 PDEAIAALEKALELDPDD 139
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
13-139 |
3.53e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 56.28 E-value: 3.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQvna 92
Cdd:COG2956 151 AELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGD--- 227
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 568983331 93 kddlpgvYQKLLDLYESADRQKWCDVCKKLVALYHQEKKHLEVARTW 139
Cdd:COG2956 228 -------PEEALELLRKALELDPSDDLLLALADLLERKEGLEAALAL 267
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
803-1079 |
4.15e-08 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 55.89 E-value: 4.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 803 LTELLEKSLHCLKKAVRLDSNNHLHWNALGvvACYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHE 882
Cdd:COG2956 20 LNGQPDKAIDLLEEALELDPETVEAHLALG--NLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 883 AFKMAQSLDPSYLLCWIGQALIAERVGSYDtmdlfrhttelsmhteGAIGYAywvcTTLQDKSNRETELY-----QYniL 957
Cdd:COG2956 98 LLEKLLELDPDDAEALRLLAEIYEQEGDWE----------------KAIEVL----ERLLKLGPENAHAYcelaeLY--L 155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 958 EMNAIPAAQGVLCKYVERIQNSASAFTMLGYLNEHLQLKKEAAEAYQRAttllhsAEDQNTYNVAVRNWGRLLCSIGDYD 1037
Cdd:COG2956 156 EQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERA------LEQDPDYLPALPRLAELYEKLGDPE 229
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568983331 1038 RAIQAFKSTPLVELEDIIGFALA--LFMKGLYKESGSAYERALA 1079
Cdd:COG2956 230 EALELLRKALELDPSDDLLLALAdlLERKEGLEAALALLERQLR 273
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
13-149 |
5.85e-08 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 52.89 E-value: 5.85e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVN- 91
Cdd:COG4783 11 AQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDe 90
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 92 AKDdlpgVYQKLLDLYESADrqkwcDVCKKLVALYHQEKKHLEVARTWHRLIKTRQED 149
Cdd:COG4783 91 ALA----LLEKALKLDPEHP-----EAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
957-1150 |
9.64e-08 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 54.27 E-value: 9.64e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 957 LEMNAIPAAQGVLCKYVERIQNSASAFTMLGYLNEHLQLKKEAAEAYQRATTLlhsaeDQNTYNVaVRNWGRLLCSIGDY 1036
Cdd:TIGR02521 42 LEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-----NPNNGDV-LNNYGTFLCQQGKY 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1037 DRAIQAFK---STPLVE-----LEDIIGFALALfmkGLYKESGSAYERALAVcksEQDKAHILTAMAIVEYKQGKMDAAK 1108
Cdd:TIGR02521 116 EQAMQQFEqaiEDPLYPqparsLENAGLCALKA---GDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDAR 189
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568983331 1109 SFLFKCSILKEPTAESLQALCALGLAMRDATLSKAALNELLK 1150
Cdd:TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
43-334 |
1.83e-07 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 53.96 E-value: 1.83e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 43 WVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVnakDDLPGVYQKLLDLYESADRqkwcdVCKKL 122
Cdd:COG2956 11 WYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEY---DRAIRIHQKLLERDPDRAE-----ALLEL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 123 VALYHQEKKHLEVARTWHRLIKTRQEDGADRQELYELWRKLSQllaeniedqnnetqqmlltaFENALDLAdnipsedhq 202
Cdd:COG2956 83 AQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGD--------------------WEKAIEVL--------- 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 203 vlyrnfiqclskfphettklkkacEEMIAIYPTVQYPLEVICLYLIDSGSLtSEGHQYCCKLVEMNSKSGPGLIGLGIIA 282
Cdd:COG2956 134 ------------------------ERLLKLGPENAHAYCELAELYLEQGDY-DEAIEALEKALKLDPDCARALLLLAELY 188
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 568983331 283 LQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK 334
Cdd:COG2956 189 LEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALE 240
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
552-712 |
2.69e-07 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 53.11 E-value: 2.69e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 552 TAVTQKASAGAAKwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDS 631
Cdd:TIGR02521 20 RSSRTTDRNKAAK-IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNN 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 632 T-----YSVFKVAaiqqiLGRYSEAIAQYQLIIKMKEDYVPA--LKGLGECHLLLGKValvdfldgkavdyvEQALGYFT 704
Cdd:TIGR02521 99 GdvlnnYGTFLCQ-----QGKYEQAMQQFEQAIEDPLYPQPArsLENAGLCALKAGDF--------------DKAEKYLT 159
|
....*...
gi 568983331 705 RALQHRAD 712
Cdd:TIGR02521 160 RALQIDPQ 167
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
258-591 |
2.70e-07 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 55.09 E-value: 2.70e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 258 HQYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKT-- 335
Cdd:TIGR02917 519 IQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAap 598
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 336 -----IDNFGAS---GGNLHQKNLCLR-------LKAEALLKLSDGASS----EEAVRTLDQVSDV--DNTPGLLVLQGL 394
Cdd:TIGR02917 599 dspeaWLMLGRAqlaAGDLNKAVSSFKkllalqpDSALALLLLADAYAVmknyAKAITSLKRALELkpDNTEAQIGLAQL 678
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 395 AcLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKD------AEVAEYHYQLG------- 461
Cdd:TIGR02917 679 L-LAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRApssqnaIKLHRALLASGntaeavk 757
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 462 ---------------LTYWFMGEETRKDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvaGDRNRARGCYRKAFELDDN 526
Cdd:TIGR02917 758 tleawlkthpndavlRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPN 835
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 527 DAESGAAAVDLSLELEDTETALAILtavtQKASAGAAKWAWLRrglYHL-----KAGQHSQAVADLQAAL 591
Cdd:TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLL----RKAVNIAPEAAAIR---YHLalallATGRKAEARKELDKLL 898
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
477-597 |
6.53e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.62 E-value: 6.53e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 477 KALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQ 556
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLR-LGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568983331 557 KASAGAAkwAWLRRGLYHLKAGQHSQAVADLQAALRADPKD 597
Cdd:COG4235 80 LDPDNPE--ALYLLGLAAFQQGDYAEAIAAWQKLLALLPAD 118
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
10-73 |
7.89e-07 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 52.25 E-value: 7.89e-07
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568983331 10 LKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQ 73
Cdd:cd24142 4 LEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDG 67
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
24-154 |
8.39e-07 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 49.23 E-value: 8.39e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 24 EALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVNAKDDLpgvYQKL 103
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEEL---LERA 77
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 568983331 104 LDLYESADRQKWCdvckkLVALYHQEKKHLEVARTWHRLIKTRQEDGADRQ 154
Cdd:COG4235 78 LALDPDNPEALYL-----LGLAAFQQGDYAEAIAAWQKLLALLPADAPARL 123
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
512-644 |
1.23e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 48.85 E-value: 1.23e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 512 RARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAkwAWLRRGLYHLKAGQHSQAVADLQAAL 591
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNAD--ALLDLAEALLAAGDTEEAEELLERAL 78
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 568983331 592 RADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQI 644
Cdd:COG4235 79 ALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASIAEA 131
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
607-708 |
1.37e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.86 E-value: 1.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 607 AYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIaQYQLIIKMKEDYVPALKGLGECHLLLGKVAlvd 686
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYD--- 76
|
90 100
....*....|....*....|..
gi 568983331 687 fldgKAVDYVEQALGYFTRALQ 708
Cdd:COG3063 77 ----EALAYLERALELDPSALR 94
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-90 |
1.61e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.30 E-value: 1.61e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQV 90
Cdd:COG3914 124 ALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRL 196
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
807-895 |
1.69e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.47 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVACYRGvgNYALAQHcFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG3063 8 LEEAEEYYEKALELDPDNADALNNLGLLLLEQG--RYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYLER 84
|
....*....
gi 568983331 887 AQSLDPSYL 895
Cdd:COG3063 85 ALELDPSAL 93
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
13-89 |
2.03e-06 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 52.30 E-value: 2.03e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568983331 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQ 89
Cdd:COG3914 85 ALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGR 161
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
429-526 |
2.62e-06 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 47.09 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 429 VHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALThFLKAARLDAHMGKVFCYLGHYYRDvAG 508
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQG-----RYDEAIA-LEKALKLDPNNAEALLNLAELLLE-LG 73
|
90
....*....|....*...
gi 568983331 509 DRNRARGCYRKAFELDDN 526
Cdd:COG3063 74 DYDEALAYLERALELDPS 91
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
255-660 |
2.90e-06 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 51.52 E-value: 2.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 255 SEGHQYCCKLVEMNSKsgpgliglgiiALQDKKYEDAVRHLTEGL--KESPVCiagWCHLAEAQVKMHRPKEAILSCNQA 332
Cdd:TIGR00990 121 EERKKYAAKLKEKGNK-----------AYRNKDFNKAIKLYSKAIecKPDPVY---YSNRAACHNALGDWEKVVEDTTAA 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 333 LKTidnfgasgGNLHQKNLCLRLKA-EALLKLSDGASSEEAVRTLDQVSDVDNTPGLLVLqglacLNTGAVDKATKIMED 411
Cdd:TIGR00990 187 LEL--------DPDYSKALNRRANAyDGLGKYADALLDLTASCIIDGFRNEQSAQAVERL-----LKKFAESKAKEILET 253
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 412 lvtSYPDLAEAHALEGRVHFTKKDYVQAevSFQRALEKDAEVAEYHYQLGLtywfmgeetRKDKTKALTHFLKAARL--- 488
Cdd:TIGR00990 254 ---KPENLPSVTFVGNYLQSFRPKPRPA--GLEDSNELDEETGNGQLQLGL---------KSPESKADESYEEAARAfek 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 489 DAHMGKVFCYLGHYYRdvagdrnrargcYRKAFELDDNDAESGaaavdlsleLEDTETALAILTAVTQkasagaakwAWL 568
Cdd:TIGR00990 320 ALDLGKLGEKEAIALN------------LRGTFKCLKGKHLEA---------LADLSKSIELDPRVTQ---------SYI 369
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 569 RRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRY 648
Cdd:TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449
|
410
....*....|..
gi 568983331 649 SEAIAQYQLIIK 660
Cdd:TIGR00990 450 ASSMATFRRCKK 461
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
978-1208 |
3.46e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 50.01 E-value: 3.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 978 NSASAFTMLGYLNEHLQLKKEAAEAYQRATTLlhSAEDQNTYNvavrNWGRLLCSIGDYDRAIQAFKSTPLVELEDIIGF 1057
Cdd:COG0457 6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--DPDDAEALY----NLGLAYLRLGRYEEALADYEQALELDPDDAEAL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1058 ---ALALFMKGLYKESGSAYERALAVcksEQDKAHILTAMAIVEYKQGKMDAAKSFLFKCSILKEPTAESLQALCALGLA 1134
Cdd:COG0457 80 nnlGLALQALGRYEEALEDYDKALEL---DPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEK 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568983331 1135 MRDATLSKAALNELLKHIKRRNDYHSCLLMSAIYALQGHSVAVQRQVAKAVHSNPADPALWSLLSRIVAQYTQR 1208
Cdd:COG0457 157 LGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALL 230
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
391-656 |
4.24e-06 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 51.24 E-value: 4.24e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 391 LQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAEVaeyhYQLG-----LT-- 463
Cdd:PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHS----SNRDkweslLKvn 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 464 -YWFM---GEETRK--DKTKALTHFLKAARLD-----AHMGkvfcyLGhyyrDVA---GDRNRARGCYRKAFELDdndae 529
Cdd:PRK11447 350 rYWLLiqqGDAALKanNLAQAERLYQQARQVDntdsyAVLG-----LG----DVAmarKDYAAAERYYQQALRMD----- 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 530 sgaaavdlslelEDTETALAILTAVTQKASAGAAKwAWLRRglyhLKAGQHsQAVADLQAALRADPkdcncWESLGEAYL 609
Cdd:PRK11447 416 ------------PGNTNAVRGLANLYRQQSPEKAL-AFIAS----LSASQR-RSIDDIERSLQNDR-----LAQQAEALE 472
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 568983331 610 SRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQ 656
Cdd:PRK11447 473 NQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMR 519
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
18-86 |
6.54e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.85 E-value: 6.54e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEK 86
Cdd:COG0457 20 RLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQA 88
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
20-174 |
6.97e-06 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 48.85 E-value: 6.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 20 KEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVNAKDDLPGV 99
Cdd:COG0457 90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEK 169
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 100 YQKLLDLYESADRQKWCDVCKKLVALYHQEKKHLEVARTWHRLIKTRQEDGADRQELYELWRKLSQLLAENIEDQ 174
Cdd:COG0457 170 LEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQYR 244
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
807-912 |
7.75e-06 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.72 E-value: 7.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVACYRGvgNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG4783 20 YDEAEALLEKALELDPDNPEAFALLGEILLQLG--DLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEK 97
|
90 100
....*....|....*....|....*.
gi 568983331 887 AQSLDPSYLLCWIGQALIAERVGSYD 912
Cdd:COG4783 98 ALKLDPEHPEAYLRLARAYRALGRPD 123
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
13-166 |
8.70e-06 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 48.96 E-value: 8.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVN- 91
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDr 94
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 92 AKDdlpgVYQKLLDLYESADrqkwcDVCKKLVALYHQEKKHLEVARTWHRLIKTRQEDGADRQELYELWRKLSQL 166
Cdd:COG2956 95 AEE----LLEKLLELDPDDA-----EALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDY 160
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
438-572 |
8.99e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 46.54 E-value: 8.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 438 QAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLDAHMGKVFCYLGHYYRDvAGDRNRARGCY 517
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLG-----RYDEALAAYEKALRLDPDNADALLDLAEALLA-AGDTEEAEELL 74
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 518 RKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAkWAWLRRGL 572
Cdd:COG4235 75 ERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP-ARLLEASI 128
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
807-892 |
1.04e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVvaCYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG5010 70 FEESLALLEQALQLDPNNPELYYNLAL--LYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQR 147
|
....*.
gi 568983331 887 AQSLDP 892
Cdd:COG5010 148 ALGTSP 153
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
478-629 |
1.11e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 46.88 E-value: 1.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 478 ALTHFLKAARLDAHMGKVFCYLGHYYRDVAGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQK 557
Cdd:COG5010 4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568983331 558 ASAGAAkwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNP 629
Cdd:COG5010 84 DPNNPE--LYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
807-894 |
1.13e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 46.34 E-value: 1.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG4783 54 LDEAIVLLHEALELDPDEPEARLNLGLA--LLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEK 131
|
....*...
gi 568983331 887 AQSLDPSY 894
Cdd:COG4783 132 ALELDPDD 139
|
|
| tol_pal_ybgF |
TIGR02795 |
tol-pal system protein YbgF; Members of this protein family are the product of one of seven ... |
569-660 |
1.35e-05 |
|
tol-pal system protein YbgF; Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Pssm-ID: 188247 [Multi-domain] Cd Length: 117 Bit Score: 45.35 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 569 RRGLYHLKAGQHSQAVADLQAALRADPK-----DCNCWesLGEAYLSRGGYTTALKSFMKASELNPDSTY---SVFKVAA 640
Cdd:TIGR02795 5 DAALLVLKAGDYADAIQAFQAFLKKYPKstyapNAHYW--LGEAYYAQGDYADAAKAFLAVVKKYPKSPKapdALLKLGM 82
|
90 100
....*....|....*....|
gi 568983331 641 IQQILGRYSEAIAQYQLIIK 660
Cdd:TIGR02795 83 SLQELGDKEKAKATLQQVIK 102
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
836-912 |
1.45e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 1.45e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568983331 836 CYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAhEAFKMAQSLDPSYLLCWIGQALIAERVGSYD 912
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEA-IALEKALKLDPNNAEALLNLAELLLELGDYD 76
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
16-112 |
1.46e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.78 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 16 AIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQgAYKKAAELEPEQLLAWQGLASLYEKCNQVNAKDD 95
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEALA 80
|
90
....*....|....*..
gi 568983331 96 LpgvYQKLLDLYESADR 112
Cdd:COG3063 81 Y---LERALELDPSALR 94
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
397-487 |
1.51e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 45.37 E-value: 1.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 397 LNTGAVDKATKIMEDLVTSYPD---LAEAHALEGRVHFTKKDYVQAEVSFQRALE---KDAEVAEYHYQLGLTYWFMGee 470
Cdd:COG1729 4 LKAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKrypDSPKAPDALLKLGLSYLELG-- 81
|
90
....*....|....*..
gi 568983331 471 trkDKTKALTHFLKAAR 487
Cdd:COG1729 82 ---DYDKARATLEELIK 95
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
18-137 |
1.77e-05 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 47.80 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQ-------- 89
Cdd:COG2956 122 QEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDyeeaiaal 201
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 568983331 90 ---VNAKDDLPGVYQKLLDLYESADR-QKWCDVCKKLVALYHQEKKHLEVAR 137
Cdd:COG2956 202 eraLEQDPDYLPALPRLAELYEKLGDpEEALELLRKALELDPSDDLLLALAD 253
|
|
| 3a0801s09 |
TIGR00990 |
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ... |
529-683 |
1.77e-05 |
|
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 273380 [Multi-domain] Cd Length: 615 Bit Score: 49.21 E-value: 1.77e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 529 ESGAAAVDLSLELEDTETALAIltavtqkasagaakwAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAY 608
Cdd:TIGR00990 311 EEAARAFEKALDLGKLGEKEAI---------------ALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN 375
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 609 LSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKVA 683
Cdd:TIGR00990 376 LELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIA 450
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
395-490 |
2.22e-05 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 44.39 E-value: 2.22e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 395 ACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEvSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkD 474
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELG-----D 74
|
90
....*....|....*.
gi 568983331 475 KTKALTHFLKAARLDA 490
Cdd:COG3063 75 YDEALAYLERALELDP 90
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
371-489 |
2.38e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.38 E-value: 2.38e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 371 EAVRTLDQV--SDVDNTPGLLVLqGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALE 448
Cdd:COG4235 1 EAIARLRQAlaANPNDAEGWLLL-GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALA 79
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568983331 449 KDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLD 489
Cdd:COG4235 80 LDPDNPEALYLLGLAAFQQG-----DYAEAIAAWQKLLALL 115
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
18-92 |
3.79e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 45.34 E-value: 3.79e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVNA 92
Cdd:COG5010 66 KLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDE 140
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
574-636 |
4.47e-05 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 46.85 E-value: 4.47e-05
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568983331 574 HLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVF 636
Cdd:cd24142 10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGGYEKY 72
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
835-912 |
5.86e-05 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 44.57 E-value: 5.86e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 835 ACYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQALIAERVGSYD 912
Cdd:COG5010 62 NLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD 139
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
305-452 |
6.46e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 44.03 E-value: 6.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 305 CIAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNFGASggnlhqknlcLRLKAEALLKLSDgasSEEAVRTLDQVSDVD- 383
Cdd:COG4783 3 CAEALYALAQALLLAGDYDEAEALLEKALELDPDNPEA----------FALLGEILLQLGD---LDEAIVLLHEALELDp 69
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 384 NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFTKKDYVQAEVSFQRALEKDAE 452
Cdd:COG4783 70 DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
841-912 |
6.75e-05 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 47.30 E-value: 6.75e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568983331 841 GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQALIAERVGSYD 912
Cdd:COG3914 92 GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLE 163
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
432-529 |
1.06e-04 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 45.30 E-value: 1.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 432 TKKDYVQAEVSFQRALEKDaeVAEYHYQLGLTYWFmGEETRKDKTKALTHFLKAARL---DAHMgkvfcYLGHYYRD--- 505
Cdd:COG0790 115 VPQDYAKALEWYEKAAEQG--DADAQYNLGLLYLN-GEGVPKDPAKAAEWYRKAAEQgdaDAQY-----NLGVLYENgrg 186
|
90 100
....*....|....*....|....
gi 568983331 506 VAGDRNRARGCYRKAFELDDNDAE 529
Cdd:COG0790 187 VPKDPAKALEWYRKAAEQGDADAQ 210
|
|
| PRK10370 |
PRK10370 |
formate-dependent nitrite reductase complex subunit NrfG; Provisional |
553-631 |
1.08e-04 |
|
formate-dependent nitrite reductase complex subunit NrfG; Provisional
Pssm-ID: 182415 [Multi-domain] Cd Length: 198 Bit Score: 44.51 E-value: 1.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 553 AVTQKASAGAAKWAWLRRGLYHLKAGQHSQA-VADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDS 631
Cdd:PRK10370 27 LLSPKWQAVRAEYQRLADPLHQFASQQTPEAqLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN 106
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
290-429 |
1.27e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.07 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 290 DAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKtidnfgasggnLHQKNLCLRLK-AEALLKLSDgas 368
Cdd:COG4235 1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALR-----------LDPDNADALLDlAEALLAAGD--- 66
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568983331 369 SEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRV 429
Cdd:COG4235 67 TEEAEELLERALALDpDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1003-1204 |
1.35e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 45.11 E-value: 1.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1003 YQRATTLLHSAEDQNTYNVAVRNW-GRLLCSIGDYDRAIQAFKStpLVELED-----IIGFALALFMKGLYKESGSAYER 1076
Cdd:COG2956 24 PDKAIDLLEEALELDPETVEAHLAlGNLYRRRGEYDRAIRIHQK--LLERDPdraeaLLELAQDYLKAGLLDRAEELLEK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1077 ALavcKSEQDKAHILTAMAIVEYKQGKMDAAKSFLFKcsiLKEPTAESLQALCALGLAMRDATLSKAALNELLKHIKR-R 1155
Cdd:COG2956 102 LL---ELDPDDAEALRLLAEIYEQEGDWEKAIEVLER---LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLdP 175
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568983331 1156 NDYHSCLLMSAIYALQGHSVAVQRQVAKAVHSNPADPALWSLLSRIVAQ 1204
Cdd:COG2956 176 DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEK 224
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
545-700 |
1.78e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 43.41 E-value: 1.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 545 ETALAILTAVTQKASAGAAKWAWLRRGLYHLKAGQHSQAVADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKA 624
Cdd:COG5010 1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 625 SELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKEDYVPALKGLGECHLLLGKVAlvdfldgKAVDYVEQAL 700
Cdd:COG5010 81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDD-------EAKAALQRAL 149
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
507-596 |
1.94e-04 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 41.69 E-value: 1.94e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 507 AGDRNRARGCYRKAFELDDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGaakWAWLRRGLYHLKAGQHSQAVAD 586
Cdd:COG3063 5 LGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEKALKLDPNNA---EALLNLAELLLELGDYDEALAY 81
|
90
....*....|
gi 568983331 587 LQAALRADPK 596
Cdd:COG3063 82 LERALELDPS 91
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
17-72 |
2.30e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.30e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 17 IRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPE 72
Cdd:COG4235 62 LAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
807-906 |
2.58e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 42.30 E-value: 2.58e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 807 LEKSLHCLKKAVRLDSNNHLHWNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKM 886
Cdd:COG4235 33 YDEALAAYEKALRLDPDNADALLDLAEA--LLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQK 110
|
90 100
....*....|....*....|
gi 568983331 887 AQSLDPSYLLCWIGQALIAE 906
Cdd:COG4235 111 LLALLPADAPARLLEASIAE 130
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
922-1184 |
2.85e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.98 E-value: 2.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 922 ELSMHTEGAIGYAYWVCTTLQDKSNRETELYQYNILEMNAIPAAQgvlckYVERIQNSASAFTMLGYLNEHLQLKKEAAE 1001
Cdd:COG3914 25 ELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAA-----AAAALLLLAALLELAALLLQALGRYEEALA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1002 AYQRAttllhsAEDQNTYNVAVRNWGRLLCSIGDYDRAIQAFKStpLVEL-----EDIIGFALALFMKGLYKESGSAYER 1076
Cdd:COG3914 100 LYRRA------LALNPDNAEALFNLGNLLLALGRLEEALAALRR--ALALnpdfaEAYLNLGEALRRLGRLEEAIAALRR 171
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1077 ALAVcksEQDKAHILTAMAIVEYKQGKMDAAKSFLFKCsILKEPTAESLQALCALGLAMRDATLSKAALNELLKHIKRRN 1156
Cdd:COG3914 172 ALEL---DPDNAEALNNLGNALQDLGRLEEAIAAYRRA-LELDPDNADAHSNLLFALRQACDWEVYDRFEELLAALARGP 247
|
250 260
....*....|....*....|....*...
gi 568983331 1157 DYHSCLLMSaiyALQGHSVAVQRQVAKA 1184
Cdd:COG3914 248 SELSPFALL---YLPDDDPAELLALARA 272
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
1027-1201 |
3.32e-04 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 43.95 E-value: 3.32e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1027 GRLLCSIGDYDRAIQAFKSTPLVELEDI-IGFALA-LFMK-GLYKESGSAYERALAvckSEQDKAHILTAMAIVEYKQGK 1103
Cdd:COG2956 15 GLNYLLNGQPDKAIDLLEEALELDPETVeAHLALGnLYRRrGEYDRAIRIHQKLLE---RDPDRAEALLELAQDYLKAGL 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 1104 MDAAKSFLFKCSILKEPTAESLQALCALGLAMRDATLSKAALNELLKhiKRRNDYHSCLLMSAIYALQGHSVAVQRQVAK 1183
Cdd:COG2956 92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK--LGPENAHAYCELAELYLEQGDYDEAIEALEK 169
|
170
....*....|....*...
gi 568983331 1184 AVHSNPADPALWSLLSRI 1201
Cdd:COG2956 170 ALKLDPDCARALLLLAEL 187
|
|
| TPR |
COG0790 |
TPR repeat [General function prediction only]; |
358-528 |
3.37e-04 |
|
TPR repeat [General function prediction only];
Pssm-ID: 440553 [Multi-domain] Cd Length: 241 Bit Score: 43.76 E-value: 3.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 358 EALLKLSDGASSEEAVRTLDQVSDVDNTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHF----TK 433
Cdd:COG0790 1 LALAAAAAAAAAAAAAALAAAAAAAGAAAAAAAAAAAAAALAAAAGAAAAAAAAAAAAAAGGAEAQYNLGLMYAegrgVP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 434 KDYVQAEVSFQRALEKDaeVAEYHYQLGLTYWFmGEETRKDKTKALTHFLKAARLDAHMGKVfcYLGHYYRD---VAGDR 510
Cdd:COG0790 81 KDYEKALEWFEKAAEQG--DAEAQYNLGLMYEE-GLGVPQDYAKALEWYEKAAEQGDADAQY--NLGLLYLNgegVPKDP 155
|
170
....*....|....*...
gi 568983331 511 NRARGCYRKAFELDDNDA 528
Cdd:COG0790 156 AKAAEWYRKAAEQGDADA 173
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
828-912 |
3.87e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.37 E-value: 3.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 828 WNALGVVacYRGVGNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQALIAER 907
Cdd:COG4785 76 YYERGVA--YDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYY 153
|
....*
gi 568983331 908 VGSYD 912
Cdd:COG4785 154 LGRYE 158
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
259-334 |
4.25e-04 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 44.60 E-value: 4.25e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 259 QYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK 334
Cdd:COG3914 99 ALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALE 174
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
353-456 |
4.34e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.53 E-value: 4.34e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 353 LRLKAEALLKLSDgasSEEAVRTLDQVSDVD-NTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHF 431
Cdd:COG4235 20 WLLLGRAYLRLGR---YDEALAAYEKALRLDpDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAF 96
|
90 100
....*....|....*....|....*
gi 568983331 432 TKKDYVQAEVSFQRALEKDAEVAEY 456
Cdd:COG4235 97 QQGDYAEAIAAWQKLLALLPADAPA 121
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
263-490 |
5.30e-04 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 43.07 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 263 KLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALKTIDNFgas 342
Cdd:COG0457 33 KALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALELDPDD--- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 343 ggnlhqknlclrlkAEALLKLsdgasseeavrtldqvsdvdntpgllvlqGLACLNTGAVDKATKIMEDLVTSYPDLAEA 422
Cdd:COG0457 110 --------------AEALYNL-----------------------------GLALLELGRYDEAIEAYERALELDPDDADA 146
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 423 HALEGRVHFTKKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGEETRKDKTKALTHFLKAARLDA 490
Cdd:COG0457 147 LYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAIL 214
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
13-86 |
5.90e-04 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 41.14 E-value: 5.90e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568983331 13 ARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEK 86
Cdd:COG4235 24 GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
353-489 |
6.11e-04 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 41.87 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 353 LRLKAEALLKLSDGASSEEAVRTLDQVSDVDNTPGLLVLQGLACLNTGAVDKATKIMEDLVTSYPDLAEAHALEGRVHFT 432
Cdd:COG5010 21 RTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSR 100
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 568983331 433 KKDYVQAEVSFQRALEKDAEVAEYHYQLGLTYWFMGeetrkDKTKALTHFLKAARLD 489
Cdd:COG5010 101 SGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLG-----QDDEAKAALQRALGTS 152
|
|
| LcrH_SycD |
TIGR02552 |
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in ... |
585-684 |
6.26e-04 |
|
type III secretion low calcium response chaperone LcrH/SycD; Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Pssm-ID: 274197 [Multi-domain] Cd Length: 135 Bit Score: 41.13 E-value: 6.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 585 ADLQAALRADPKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDSTYSVFKVAAIQQILGRYSEAIAQYQLIIKMKED 664
Cdd:TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83
|
90 100
....*....|....*....|
gi 568983331 665 YVPALKGLGECHLLLGKVAL 684
Cdd:TIGR02552 84 DPRPYFHAAECLLALGEPES 103
|
|
| TPR_15 |
pfam13429 |
Tetratricopeptide repeat; |
419-665 |
6.31e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433199 [Multi-domain] Cd Length: 279 Bit Score: 43.11 E-value: 6.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 419 LAEAHALeGRVHFTKKDYVQAevsfQRALEKDAEVA-----EYHYQLGLTYWFMGEEtrKDKTKALTHFL---KAARLDA 490
Cdd:pfam13429 8 PNEAYAL-ATLLYGQGDPRKA----LAALKEGAQTApasdtEFWRTLADLAWALQQD--DDARRAYRQLLasgKARADDY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 491 -HMgkvfcyLGHYYRDVAGDRNR-ARGCYRKafeldDNDAESGAAAVDLSLELEDTETALAILTAVTQKASAGAAKWAWL 568
Cdd:pfam13429 81 eRL------ILLLYDARPKDAARlSELGWRR-----FRSPRHLYSALYLYERAGDYDRLARLLASLEELPAAEQSPAFWL 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 569 RRGLYHLKAGQHSQAVADLQAALRADPKDcncwESLGEAYL----SRGGYTTaLKSFMKASELNPDSTYSVFKV-AAIQQ 643
Cdd:pfam13429 150 ARAEYYRQTGEPDAALRDYRRALALAPAS----TELRAALLwfliDLGRRAE-LRPALAAWRARAETDADLWGPlAAAYL 224
|
250 260
....*....|....*....|...
gi 568983331 644 ILGRYSEAIAQYQLIIK-MKEDY 665
Cdd:pfam13429 225 RLGRPRKALPYLRKQAAsNRNDP 247
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
15-515 |
6.96e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 43.92 E-value: 6.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 15 DAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVNAKD 94
Cdd:TIGR02917 440 SYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAI 519
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 95 DLpgvYQKLLDLYesadrQKWCDVCKKLVALYHQEKKHLEVARTWHRLIKtrqedgADRQELyelwrKLSQLLAENIEDQ 174
Cdd:TIGR02917 520 QR---FEKVLTID-----PKNLRAILALAGLYLRTGNEEEAVAWLEKAAE------LNPQEI-----EPALALAQYYLGK 580
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 175 NNetqqmLLTAFENALDLADNIPS--EDHQVLYRNFIQcLSKFphetTKLKKACEEMIAIYPTvQYPLEVICLYLIDSGS 252
Cdd:TIGR02917 581 GQ-----LKKALAILNEAADAAPDspEAWLMLGRAQLA-AGDL----NKAVSSFKKLLALQPD-SALALLLLADAYAVMK 649
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 253 LTSEGHQYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQA 332
Cdd:TIGR02917 650 NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 333 LKTidnfgaSGGNLHQKNLclrlkAEALLKLSDGAsseEAVRTLDQV--SDVDNTPGLLVLQGLAcLNTGAVDKATKIME 410
Cdd:TIGR02917 730 LKR------APSSQNAIKL-----HRALLASGNTA---EAVKTLEAWlkTHPNDAVLRTALAELY-LAQKDYDKAIKHYQ 794
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 411 DLVTSYPDLAEAHALEGRVHFTKKDyVQAEVSFQRALEKDAEVAEYHYQLGLTYWfmgeeTRKDKTKALTHFLKAARLDA 490
Cdd:TIGR02917 795 TVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLV-----EKGEADRALPLLRKAVNIAP 868
|
490 500
....*....|....*....|....*
gi 568983331 491 HMGKVFCYLGHYYRDvAGDRNRARG 515
Cdd:TIGR02917 869 EAAAIRYHLALALLA-TGRKAEARK 892
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
861-894 |
7.50e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 38.17 E-value: 7.50e-04
10 20 30
....*....|....*....|....*....|....
gi 568983331 861 AAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSY 894
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
263-334 |
9.51e-04 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 40.95 E-value: 9.51e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568983331 263 KLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK 334
Cdd:COG4783 63 EALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALE 134
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
122-334 |
1.29e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 43.06 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 122 LVALYHQEKKHLEVARTWHRLIKTRQEDGADRQELYELWRKLSQLLAENIEDQNNETQQMLLTAFENA-----LDLADNI 196
Cdd:COG3914 1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAaaaaaLLLLAAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 197 PSEDHQVLYRNfiqclskfpHETTKLKKACEEMIAIYPTVQYPLEVICLYLIDSGSLTsEGHQYCCKLVEMNSKSGPGLI 276
Cdd:COG3914 81 LELAALLLQAL---------GRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLE-EALAALRRALALNPDFAEAYL 150
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 277 GLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK 334
Cdd:COG3914 151 NLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALE 208
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
841-924 |
1.84e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.79 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 841 GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPSYLLCWIGQALIAERVGSYDT-MDLFRH 919
Cdd:COG4783 18 GDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEaLALLEK 97
|
....*
gi 568983331 920 TTELS 924
Cdd:COG4783 98 ALKLD 102
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
3-194 |
2.11e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 41.64 E-value: 2.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 3 SKEVKTALKSARDAIRNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLAS 82
Cdd:COG2956 39 PETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAE 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 83 LYEKcnqvnAKDdlpgvYQKLLDLYESADRQK------WCdvckKLVALYHQEKKHLEVARTWHRLIKTRQEDGADRQEL 156
Cdd:COG2956 119 IYEQ-----EGD-----WEKAIEVLERLLKLGpenahaYC----ELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL 184
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568983331 157 YELWRKLSQL-----LAENIEDQNNETQQMLLTAFENALDLAD 194
Cdd:COG2956 185 AELYLEQGDYeeaiaALERALEQDPDYLPALPRLAELYEKLGD 227
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
18-105 |
3.01e-03 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 41.90 E-value: 3.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568983331 18 RNKEYKEALKHCKTVLKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQVNAKDDLP 97
Cdd:COG3914 158 RLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRFE 237
|
....*...
gi 568983331 98 GVYQKLLD 105
Cdd:COG3914 238 ELLAALAR 245
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
256-334 |
3.14e-03 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 39.40 E-value: 3.14e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568983331 256 EGHQYCCKLVEMNSKSGPGLIGLGIIALQDKKYEDAVRHLTEGLKESPVCIAGWCHLAEAQVKMHRPKEAILSCNQALK 334
Cdd:COG4783 22 EAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALK 100
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
33-110 |
5.78e-03 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 39.99 E-value: 5.78e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568983331 33 LKQEKNNYNAWVFIGVAAAELEQPDQAQGAYKKAAELEPEQLLAWQGLASLYEKCNQvnakddlpgvYQKLLDLYESA 110
Cdd:COG0457 1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGR----------YEEALADYEQA 68
|
|
| ACL4-like |
cd24142 |
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ... |
841-901 |
6.71e-03 |
|
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.
Pssm-ID: 467942 [Multi-domain] Cd Length: 306 Bit Score: 39.92 E-value: 6.71e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568983331 841 GNYALAQHCFIKSIQAEQINAAAWTNLGVLYLATENIEQAHEAFKMAQSLDPS-----YLlcWIGQ 901
Cdd:cd24142 14 GNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDggyekYL--YLGQ 77
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
568-631 |
9.59e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 36.16 E-value: 9.59e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568983331 568 LRRGLYHLKAGQHSQAVADLQAALRAD---PKDCNCWESLGEAYLSRGGYTTALKSFMKASELNPDS 631
Cdd:pfam13432 1 LALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGD 67
|
|
| |
