|
Name |
Accession |
Description |
Interval |
E-value |
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
25-577 |
0e+00 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 794.03 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 25 ELHRRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQ 104
Cdd:pfam10174 214 ELHRRNQLQPDPAKTKALQTVIEMKDTKISSLERNIRDLEDEVQMLKTNGLLHTEDREEEIKQMEVYKSHSKFMKNKIDQ 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 105 LKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTE 184
Cdd:pfam10174 294 LKQELSKKESELLALQTKLETLTNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 185 EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIE 264
Cdd:pfam10174 374 EKSTLAGEIRDLKDMLDVKERKINVLQKKIENLQEQLRDKDKQLAGLKERVKSLQTDSSNTDTALTTLEEALSEKERIIE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 265 RLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEEC 344
Cdd:pfam10174 454 RLKEQREREDRERLEELESLKKENKDLKEKVSALQPELTEKESSLIDLKEHASSLASSGLKKDSKLKSLEIAVEQKKEEC 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 345 NKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHM 424
Cdd:pfam10174 534 SKLENQLKKAHNAEEAVRTNPEINDRIRLLEQEVARYKEESGKAQAEVERLLGILREVENEKNDKDKKIAELESLTLRQM 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 425 KDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLA 504
Cdd:pfam10174 614 KEQNKKVANIKHGQQEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQELDATKARLSSTQQSLAEKDGHLT 693
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568987552 505 NLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 577
Cdd:pfam10174 694 NLRAERRKQLEEILEMKQEALLAAISEKDANIALLELSSSKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 766
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
99-585 |
2.89e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 2.89e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 258
Cdd:COG1196 332 LEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEA 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 259 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKL------KS 332
Cdd:COG1196 412 LLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLeelaeaAA 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 333 LEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKA-QAEVDRLLEILKEVENEknDKDK 411
Cdd:COG1196 492 RLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAAlQNIVVEDDEVAAAAIEY--LKAA 569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 412 KIAELESLTLRHMKDQNKKVANLKYNQQLEKK-----KNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATK 486
Cdd:COG1196 570 KAGRATFLPLDKIRARAALAAALARGAIGAAVdlvasDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREV 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 487 ARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQ 566
Cdd:COG1196 650 TLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQ 729
|
490
....*....|....*....
gi 568987552 567 LKQQTQNRMKLMADNYDED 585
Cdd:COG1196 730 LEAEREELLEELLEEEELL 748
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
99-351 |
2.08e-14 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 77.03 E-value: 2.08e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:TIGR02169 673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQE 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVL-----QKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLE 253
Cdd:TIGR02169 753 IENVKSELKELEARIEELEEDLHKLEEALNDLearlsHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLE 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 254 EALSEKERIIERLKEQRErddrERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSL 333
Cdd:TIGR02169 833 KEIQELQEQRIDLKEQIK----SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908
|
250
....*....|....*...
gi 568987552 334 EIAIEQKKEECNKLEAQL 351
Cdd:TIGR02169 909 EAQIEKKRKRLSELKAKL 926
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
47-563 |
2.84e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 2.84e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 47 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVykshskfMKTKIDQLKQELSKKESELLALQTKLETL 126
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAE-------LEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 127 SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERK 206
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAE 373
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 207 INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE---RDDRERLEEIES 283
Cdd:COG1196 374 LAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEeeeEALEEAAEEEAE 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 284 FRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLAS-------------------------AGLKRDSKLKSLEIAIE 338
Cdd:COG1196 454 LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAArllllleaeadyegflegvkaalllAGLRGLAGAVAVLIGVE 533
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 339 QKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQ----------LDKEASYYRDECGKAQAEVDR---LLEILKEVENE 405
Cdd:COG1196 534 AAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAakagratflpLDKIRARAALAAALARGAIGAavdLVASDLREADA 613
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 406 KNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDAT 485
Cdd:COG1196 614 RYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEEL 693
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 486 KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKT--------QEEVMALK 557
Cdd:COG1196 694 ELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEEALEELPeppdleelERELERLE 773
|
....*.
gi 568987552 558 REKDRL 563
Cdd:COG1196 774 REIEAL 779
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
99-416 |
2.28e-13 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 73.55 E-value: 2.28e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDckqhievLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEE-------LEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 258
Cdd:TIGR02168 749 IAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLES 828
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 259 KERIIERLKEQRERDD---RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEI 335
Cdd:TIGR02168 829 LERRIAATERRLEDLEeqiEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 336 AIEQKKEECNKLEAQLKKAHNIEDDSRMNpefadRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 415
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVR-----IDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
.
gi 568987552 416 L 416
Cdd:TIGR02168 984 L 984
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
245-572 |
7.70e-13 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 71.89 E-value: 7.70e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 245 TDTALATLEEALSEKERIIERLKEQRER-------DDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS 317
Cdd:COG1196 184 TEENLERLEDILGELERQLEPLERQAEKaeryrelKEELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELA 263
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 318 SLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHN-IEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLL 396
Cdd:COG1196 264 ELEAELEELRLELEELELELEEAQAEEYELLAELARLEQdIARLEERRRELEERLEELEEELAELEEELEELEEELEELE 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 397 EILKEVENEKNDKDKKIAELESLTLRhmkdqnkkvanlkynqqLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALE 476
Cdd:COG1196 344 EELEEAEEELEEAEAELAEAEEALLE-----------------AEAELAEAEEELEELAEELLEALRAAAELAAQLEELE 406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 477 KTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMAL 556
Cdd:COG1196 407 EAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
330
....*....|....*.
gi 568987552 557 KREKDRLVHQLKQQTQ 572
Cdd:COG1196 487 AEAAARLLLLLEAEAD 502
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
40-323 |
2.76e-12 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 70.10 E-value: 2.76e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 40 KALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKS-HSKFMKTKIDQLKQELSKKESELLA 118
Cdd:TIGR02169 233 EALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEeEQLRVKEKIGELEAEIASLERSIAE 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 119 LQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKD 198
Cdd:TIGR02169 313 KERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYRE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 199 MLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRerddrerl 278
Cdd:TIGR02169 393 KLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADL-------- 464
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 568987552 279 eeiESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG 323
Cdd:TIGR02169 465 ---SKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERV 506
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
52-519 |
4.82e-12 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 69.30 E-value: 4.82e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 52 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHskfmKTKIDQLKQELSKKESELLALQTKLETLSNQNS 131
Cdd:PRK02224 207 RLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEER----REELETLEAEIEDLRETIAETEREREELAEEVR 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 132 DCKQHIEVLKESLT--------------AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQL--------------QDLT 183
Cdd:PRK02224 283 DLRERLEELEEERDdllaeaglddadaeAVEARREELEDRDEELRDRLEECRVAAQAHNEEAeslredaddleeraEELR 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 184 EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERII 263
Cdd:PRK02224 363 EEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 264 ERLKEQRE--------------------RDDRERLEEIES----FRKENKDLKEKVNALQaELTEKESSLIDLKEHASSL 319
Cdd:PRK02224 443 EEAEALLEagkcpecgqpvegsphvetiEEDRERVEELEAeledLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDL 521
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 320 ASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPE-FADRLKQLDKEasyyRDECGKAQAEVDRLLEI 398
Cdd:PRK02224 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEeAREEVAELNSK----LAELKERIESLERIRTL 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 399 LKEVEN------EKNDKDKKIAELESLTLRHMKDQNKKVAnlkynqQLEKKKNAQLLEEVRRREDSMVDnsqhlQIEELM 472
Cdd:PRK02224 598 LAAIADaedeieRLREKREALAELNDERRERLAEKRERKR------ELEAEFDEARIEEAREDKERAEE-----YLEQVE 666
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 568987552 473 NALEKTRQELDATKARLASTQQSLAEkeahLANLRiERRKQLEEILE 519
Cdd:PRK02224 667 EKLDELREERDDLQAEIGAVENELEE----LEELR-ERREALENRVE 708
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
53-354 |
7.37e-12 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 68.54 E-value: 7.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 53 IASLERNIRDLEDEVQmlKANGVLNTEDREEEIkQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsd 132
Cdd:TIGR02168 195 LNELERQLKSLERQAE--KAERYKELKAELREL-ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK--- 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 133 ckqhIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKER------- 205
Cdd:TIGR02168 269 ----LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEelaelee 344
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 206 KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFR 285
Cdd:TIGR02168 345 KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE 424
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 286 KENKDLKE-KVNALQAELTEKESSLIDLKEHASSLASAglkrdskLKSLEIAIEQKKEECNKLEAQLKKA 354
Cdd:TIGR02168 425 ELLKKLEEaELKELQAELEELEEELEELQEELERLEEA-------LEELREELEEAEQALDAAERELAQL 487
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
47-519 |
1.74e-11 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 67.37 E-value: 1.74e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 47 EMKDTKIASLERNIRDLEDEVQmlkangvlNTEDREEEIK-QIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLET 125
Cdd:PRK02224 247 EERREELETLEAEIEDLRETIA--------ETEREREELAeEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREE 318
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 126 LSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktkqlqdltEEKGTLAGEIRDMKDMLEVKER 205
Cdd:PRK02224 319 LEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR--------------EEAAELESELEEAREAVEDRRE 384
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 206 KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE-------------- 271
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEagkcpecgqpvegs 464
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 272 ------RDDRERLEEIES----FRKENKDLKEKVNALQaELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKK 341
Cdd:PRK02224 465 phvetiEEDRERVEELEAeledLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 342 EECNKLEAQLKKAHNIEDDSRMNPE-FADRLKQLDKEasyyRDECGKAQAEVDRLLEILKEVEN------EKNDKDKKIA 414
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEAEeAREEVAELNSK----LAELKERIESLERIRTLLAAIADaedeieRLREKREALA 619
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 415 ELESLTLRHMKDQNKKVANL-------KYNQQLEKKKNAQL--------LEEVRRREDS------MVDNSqhlqIEELmN 473
Cdd:PRK02224 620 ELNDERRERLAEKRERKRELeaefdeaRIEEAREDKERAEEyleqveekLDELREERDDlqaeigAVENE----LEEL-E 694
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568987552 474 ALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILE 519
Cdd:PRK02224 695 ELRERREALENRVEALEALYDEAEELESMYGDLRAELRQRNVETLE 740
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
54-577 |
3.96e-11 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 66.30 E-value: 3.96e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 54 ASLERNIRDLEDEVQMLKANgVLNTEDREEEIKQiEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDC 133
Cdd:pfam15921 220 SAISKILRELDTEISYLKGR-IFPVEDQLEALKS-ESQNKIELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSI 297
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 134 KQHIEVLKESltAKEQRAAILqtevdalrlrleekesflnkktKQLQDLTEEKGTLAGEIRDMKDMLEvkerkinvlqKK 213
Cdd:pfam15921 298 QSQLEIIQEQ--ARNQNSMYM----------------------RQLSDLESTVSQLRSELREAKRMYE----------DK 343
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 214 IENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRER---DDRERLEEIESFRKENKD 290
Cdd:pfam15921 344 IEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRlwdRDTGNSITIDHLRRELDD 423
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 291 LKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK-KAHNIEDDSRMNPEFAD 369
Cdd:pfam15921 424 RNMEVQRLEALLKAMKSECQGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRKVVEELTaKKMTLESSERTVSDLTA 503
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 370 RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRhMKDQNKKVANLKynQQLEKKknAQLL 449
Cdd:pfam15921 504 SLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKLQ-MAEKDKVIEILR--QQIENM--TQLV 578
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 450 EEVRRREDSMVDNSQHLQIEelmnaLEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALLAAI 529
Cdd:pfam15921 579 GQHGRTAGAMQVEKAQLEKE-----INDRRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSE-RLRAVKDIK 652
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 568987552 530 SEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLkQQTQNRMKL 577
Cdd:pfam15921 653 QERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEM-ETTTNKLKM 699
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
142-350 |
6.33e-11 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 64.40 E-value: 6.33e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 142 ESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL 221
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAEL 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 222 rdkDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAE 301
Cdd:COG4942 100 ---EAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLA----PARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 568987552 302 LTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQ 350
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
79-563 |
8.70e-11 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 65.09 E-value: 8.70e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 79 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQnsdcKQHIEVLKESLTAKEQRAAILQTEV 158
Cdd:PRK03918 179 ERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKE----VKELEELKEEIEELEKELESLEGSK 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 159 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAG--------------------EIRDMKDMLEVKERKINVLQKKI---E 215
Cdd:PRK03918 255 RKLEEKIRELEERIEELKKEIEELEEKVKELKElkekaeeyiklsefyeeyldELREIEKRLSRLEEEINGIEERIkelE 334
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 216 NLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKV 295
Cdd:PRK03918 335 EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARI 414
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 296 NALQAELTEKESSLIDLK---------------EHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDD 360
Cdd:PRK03918 415 GELKKEIKELKKAIEELKkakgkcpvcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESE 494
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 361 SRMNPEFADRLKQLDKEASYYRDECGKAQAE------------------VDRLLEILKEVENEKNDKDKKIAELEsltlR 422
Cdd:PRK03918 495 LIKLKELAEQLKELEEKLKKYNLEELEKKAEeyeklkekliklkgeiksLKKELEKLEELKKKLAELEKKLDELE----E 570
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 423 HMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmNALEKTRQELDATKARLASTQQSLAEKEAH 502
Cdd:PRK03918 571 ELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREE--KELKKLEEELDKAFEELAETEKRLEELRKE 648
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 503 LANLRI----ERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRL 563
Cdd:PRK03918 649 LEELEKkyseEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
244-563 |
2.30e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 63.92 E-value: 2.30e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 244 NTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG 323
Cdd:TIGR02168 183 RTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAEL 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 324 LKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHN-IEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEV 402
Cdd:TIGR02168 263 QELEEKLEELRLEVSELEEEIEELQKELYALANeISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAEL 342
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 403 ENEKNDKDKKIAELEsltlrhmkDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDsmvdnsqhlQIEELMNALEKTRQEL 482
Cdd:TIGR02168 343 EEKLEELKEELESLE--------AELEELEAELEELESRLEELEEQLETLRSKVA---------QLELQIASLNNEIERL 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 483 DATKARLASTQQSL-AEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 561
Cdd:TIGR02168 406 EARLERLEDRRERLqQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
..
gi 568987552 562 RL 563
Cdd:TIGR02168 486 QL 487
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
154-528 |
3.86e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 63.16 E-value: 3.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 154 LQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIrdmkdmlEVKERKINVLQKKIENLQEQLRDKDKQLTNLKD 233
Cdd:TIGR02169 686 LKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEI-------EQLEQEEEKLKERLEELEEDLSSLEQEIENVKS 758
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 234 RvkslqtdssntdtaLATLEEALSEKERIIERLKEQRER-DDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLidl 312
Cdd:TIGR02169 759 E--------------LKELEARIEELEEDLHKLEEALNDlEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKL--- 821
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 313 kehasslasagLKRDSKLKSLEIAIEQKKEECNKLEAQLKK-AHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAE 391
Cdd:TIGR02169 822 -----------NRLTLEKEYLEKEIQELQEQRIDLKEQIKSiEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKE 890
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 392 VDRLLEILKEVENEKNDKDKKIAELESltlrHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEEL 471
Cdd:TIGR02169 891 RDELEAQLRELERKIEELEAQIEKKRK----RLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEE 966
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568987552 472 MNALE----KTRQELDATKARLastqQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAA 528
Cdd:TIGR02169 967 IRALEpvnmLAIQEYEEVLKRL----DELKEKRAKLEEERKAILERIEEYEKKKREVFMEA 1023
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
203-499 |
5.64e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 5.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 203 KERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERddreRLEEIE 282
Cdd:TIGR02168 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ----LEERIA 750
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 283 SFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEECNKLEAQLKKAHNIEddSR 362
Cdd:TIGR02168 751 QLSKELTELEAEIEELEERLEEAEEELAEAEA--------------EIEELEAQIEQLKEELKALREALDELRAEL--TL 814
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 363 MNPEFAD---RLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHMKDQNKKVANLKynqq 439
Cdd:TIGR02168 815 LNEEAANlreRLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA---- 890
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 440 lEKKKNAQLLEEVRRREDSMVDNSQHlQIEELMNALEKTRQELDATKARLASTQQSLAEK 499
Cdd:TIGR02168 891 -LLRSELEELSEELRELESKRSELRR-ELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
28-304 |
6.04e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.38 E-value: 6.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 28 RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQ 107
Cdd:TIGR02168 717 LRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 108 ELSKKESELLALQTKLETLsnqnsdckqhievlKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKG 187
Cdd:TIGR02168 797 ELKALREALDELRAELTLL--------------NEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIE 862
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 188 TLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE----RII 263
Cdd:TIGR02168 863 ELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEvridNLQ 942
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 568987552 264 ERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTE 304
Cdd:TIGR02168 943 ERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKE 983
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
38-577 |
1.11e-09 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 61.57 E-value: 1.11e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 38 KTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELL 117
Cdd:TIGR04523 69 KINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKNDKEQKNKLEVELNKLEKQKKENKKNIDKFLTEIK 148
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 118 ALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR---LRLEEKESFLNKKTKQLQDLTEEKGTLAGEIR 194
Cdd:TIGR04523 149 KKEKELEKLNNKYNDLKKQKEELENELNLLEKEKLNIQKNIDKIKnklLKLELLLSNLKKKIQKNKSLESQISELKKQNN 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 195 DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERD- 273
Cdd:TIGR04523 229 QLKDNIEKKQQEINEKTTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNNQKEQDw 308
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 274 DRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRD-------SKLKSLEIAIEQKKEECNK 346
Cdd:TIGR04523 309 NKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQreleekqNEIEKLKKENQSYKQEIKN 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 347 LEAQLKKAH-NIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTlrhmK 425
Cdd:TIGR04523 389 LESQINDLEsKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTR----E 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 426 DQNKKVANLKYnqqlEKKKNAQLLEEVRRREDSmvDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLAN 505
Cdd:TIGR04523 465 SLETQLKVLSR----SINKIKQNLEQKQKELKS--KEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKES 538
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568987552 506 LRIERRKQLEEI-LEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKL 577
Cdd:TIGR04523 539 KISDLEDELNKDdFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKK 611
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-408 |
1.13e-09 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 61.62 E-value: 1.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 52 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 131
Cdd:TIGR02169 696 ELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLH 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 132 DCKQHIEVLKESLT-----AKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERK 206
Cdd:TIGR02169 776 KLEEALNDLEARLShsripEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKE 855
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 207 INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNtdtalatLEEALSEKERIIERLKEQRERDdrerleeiesfRK 286
Cdd:TIGR02169 856 IENLNGKKEELEEELEELEAALRDLESRLGDLKKERDE-------LEAQLRELERKIEELEAQIEKK-----------RK 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 287 ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASaglkrdsklksleiaIEQKKEECNKLEAQLKKAHNIedDSRMNPE 366
Cdd:TIGR02169 918 RLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS---------------LEDVQAELQRVEEEIRALEPV--NMLAIQE 980
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568987552 367 FADRLKQLDKeasyYRDECGKAQAEVDRLLEILKEVENEKND 408
Cdd:TIGR02169 981 YEEVLKRLDE----LKEKRAKLEEERKAILERIEEYEKKKRE 1018
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
99-307 |
5.56e-09 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 58.24 E-value: 5.56e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDL------TEEKGTL-----AGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT 247
Cdd:COG4942 106 LAELlralyrLGRQPPLalllsPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 248 ALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDLKEKVNALQAELTEKES 307
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELA----AELAELQQEAEELEALIARLEAEAAAAAE 241
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
98-300 |
1.84e-08 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 57.62 E-value: 1.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 98 MKTKIDQLK---QELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAI----LQTEVDALRLRLEEKES 170
Cdd:COG4913 223 TFEAADALVehfDDLERAHEALEDAREQIELLEPIRELAERYAAARERLAELEYLRAALrlwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 171 FLNKKTKQLQDLTEEKGTLAGEIRDMK-DMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 249
Cdd:COG4913 303 ELARLEAELERLEARLDALREELDELEaQIRGNGGDRLEQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEF 382
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568987552 250 ATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQA 300
Cdd:COG4913 383 AALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
102-417 |
2.14e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 57.39 E-value: 2.14e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 102 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAIL----QTEVDALRLRLEEKESFLNKKTK 177
Cdd:TIGR02169 165 VAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLkekrEYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENL--------QEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 249
Cdd:TIGR02169 245 QLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgeeeqlrvKEKIGELEAEIASLERSIAEKERELEDAEERL 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 250 ATLEEALSEKERIIERLKEQRERDDRERleeiESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 329
Cdd:TIGR02169 325 AKLEAEIDKLLAEIEELEREIEEERKRR----DKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKRE 400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 330 LKSLEIAIEQKKEECNKLEAQLKKAHN-IEDDSRMNPEFADRLKQLDKE-------ASYYRDECGKAQAEVDRLLEILKE 401
Cdd:TIGR02169 401 INELKRELDRLQEELQRLSEELADLNAaIAGIEAKINELEEEKEDKALEikkqewkLEQLAADLSKYEQELYDLKEEYDR 480
|
330
....*....|....*.
gi 568987552 402 VENEKNDKDKKIAELE 417
Cdd:TIGR02169 481 VEKELSKLQRELAEAE 496
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
169-354 |
2.99e-08 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 55.99 E-value: 2.99e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 169 ESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLT-----------NLKDRVKS 237
Cdd:COG3883 15 DPQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAeaeaeieerreELGERARA 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 238 LQTDSSNTDTALATLE----EALSEKERIIERLKEQrerdDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK 313
Cdd:COG3883 95 LYRSGGSVSYLDVLLGsesfSDFLDRLSALSKIADA----DADLLEELKADKAELEAKKAELEAKLAELEALKAELEAAK 170
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568987552 314 EhasSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKA 354
Cdd:COG3883 171 A---ELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAA 208
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
79-576 |
5.78e-08 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.30 E-value: 5.78e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 79 EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLK--ESLTAKEQRAAILQT 156
Cdd:PTZ00121 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKaeEKKKADEAKKAEEKK 1302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 157 EVDALRLRLEEKesflnKKTKQLQDLTEEKGTLAGEIR----DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLK 232
Cdd:PTZ00121 1303 KADEAKKKAEEA-----KKADEAKKKAEEAKKKADAAKkkaeEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 233 DRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKvnalqAELTEKESSLIDL 312
Cdd:PTZ00121 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKK-----AEEAKKADEAKKK 1452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 313 KEHASSLASAGLKRDSKLKSLEIaiEQKKEECNKLEAQLKKAHNIE---DDSRMNPEFADRLKQLDKEASYYRDECGKAQ 389
Cdd:PTZ00121 1453 AEEAKKAEEAKKKAEEAKKADEA--KKKAEEAKKADEAKKKAEEAKkkaDEAKKAAEAKKKADEAKKAEEAKKADEAKKA 1530
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 390 AEVDRLLEILKEVENEKNDKDKKIAELEsltlrhmKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIE 469
Cdd:PTZ00121 1531 EEAKKADEAKKAEEKKKADELKKAEELK-------KAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 470 ELMNALEKTRQELDA-TKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE-----ALLAAISEKDANIALLELSA 543
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAkIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEnkikaAEEAKKAEEDKKKAEEAKKA 1683
|
490 500 510
....*....|....*....|....*....|...
gi 568987552 544 SKKKKTQEEVMALKREKDRLVHQLKQQTQNRMK 576
Cdd:PTZ00121 1684 EEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
81-572 |
1.17e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 55.15 E-value: 1.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 81 REEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESEllALQTKLETLSNQNSDCKQHIEVLK--ESLTAKEQRAAILQTEV 158
Cdd:PTZ00121 1291 KADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE--EAKKKADAAKKKAEEAKKAAEAAKaeAEAAADEAEAAEEKAEA 1368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 159 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKinvlQKKIENLQEQLRDKDKqltnlKDRVKSL 238
Cdd:PTZ00121 1369 AEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA----KKKADEAKKKAEEKKK-----ADEAKKK 1439
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 239 QTDSSNTDTALATLEE---ALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEH 315
Cdd:PTZ00121 1440 AEEAKKADEAKKKAEEakkAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAE 1519
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 316 ASSLASAGLKRDSKLKsleiAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKaQAEVDRL 395
Cdd:PTZ00121 1520 EAKKADEAKKAEEAKK----ADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK-KAEEARI 1594
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 396 LEILKEVENEKNDKDKKI-----AELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEvrrREDSMVDNSQHLQIEE 470
Cdd:PTZ00121 1595 EEVMKLYEEEKKMKAEEAkkaeeAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKA---EEENKIKAAEEAKKAE 1671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 471 lmnalEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQ 550
Cdd:PTZ00121 1672 -----EDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKA 1746
|
490 500
....*....|....*....|..
gi 568987552 551 EEVMALKREKDRLVHQLKQQTQ 572
Cdd:PTZ00121 1747 EEAKKDEEEKKKIAHLKKEEEK 1768
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
99-325 |
1.18e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 1.18e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:COG4942 33 QQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKEELAELLRA 112
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDL-TEEKGTLAGEIRDMKDMLevkeRKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSsntdTALATLEEALS 257
Cdd:COG4942 113 LYRLgRQPPLALLLSPEDFLDAV----RRLQYLKYLAPARREQAEELRADLAELAALRAELEAER----AELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568987552 258 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 325
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALK 252
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
122-577 |
3.21e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 53.51 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 122 KLETLSNQNSDCKQHIE-VLKESLTAKEQ-RAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM 199
Cdd:PRK02224 163 KLEEYRERASDARLGVErVLSDQRGSLDQlKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADEV 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 200 LEVKERK---INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEKERIIERLKEQRER 272
Cdd:PRK02224 243 LEEHEERreeLETLEAEIEDLRETIAETEREREELAEEVRDLRerleELEEERDDLLAEAGLDDADAEAVEARREELEDR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 273 DD--RERLEE----IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNK 346
Cdd:PRK02224 323 DEelRDRLEEcrvaAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 347 LEAQLKKAhniEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK------EVENEK-----NDKDKKIAE 415
Cdd:PRK02224 403 APVDLGNA---EDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKcpecgqPVEGSPhvetiEEDRERVEE 479
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 416 LESLtLRHMKDQNKKVanlkyNQQLEKKKNAQLLEEVRRREDSMVDNSQHLqIEELMNALEKTRQELDATKARLASTQQS 495
Cdd:PRK02224 480 LEAE-LEDLEEEVEEV-----EERLERAEDLVEAEDRIERLEERREDLEEL-IAERRETIEEKRERAEELRERAAELEAE 552
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 496 LAEKEAHLANLRIERRKQLEEILEMKQEalLAAISEKDANIALLELSASKKKKTQEEVMALkreKDRLVHQLKQQTQNRM 575
Cdd:PRK02224 553 AEEKREAAAEAEEEAEEAREEVAELNSK--LAELKERIESLERIRTLLAAIADAEDEIERL---REKREALAELNDERRE 627
|
..
gi 568987552 576 KL 577
Cdd:PRK02224 628 RL 629
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
99-308 |
6.13e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.14 E-value: 6.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:COG3883 22 QKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERARALYRSGGS 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLT-----EEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLE 253
Cdd:COG3883 102 VSYLDvllgsESFSDFLDRLSALSKIADADADLLEELKADKAELEAKKAELEAKLAELEALKAELE-------AAKAELE 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 254 EALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAELTEKESS 308
Cdd:COG3883 175 AQQAEQEALLAQLSAEE----AAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAA 225
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
47-581 |
6.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.75 E-value: 6.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 47 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKShskfmktKIDQLKQELSKKESELLALQTKLETL 126
Cdd:TIGR02168 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEE-------KLEELRLEVSELEEEIEELQKELYAL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 127 SNQNSDCKQHIEVLKESLtakeqraAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERK 206
Cdd:TIGR02168 294 ANEISRLEQQKQILRERL-------ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 207 INVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERL-EEIESFR 285
Cdd:TIGR02168 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELqAELEELE 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 286 KENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDdsrmnp 365
Cdd:TIGR02168 447 EELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSGLSG------ 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 366 eFADRLKQLDKEASYYRDECGKAQAE------VDRLLEILKEVENEKNDKDKKIAELESLTLRHMKDQNKK--------- 430
Cdd:TIGR02168 521 -ILGVLSELISVDEGYEAAIEAALGGrlqavvVENLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDreilknieg 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 431 ----------------------------VANLKYNQQLEKKKNAQ----------------LLEEVRRREDSMVDNSQHL 466
Cdd:TIGR02168 600 flgvakdlvkfdpklrkalsyllggvlvVDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREI 679
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 467 -----QIEELMNALEKTRQELDATKARLASTQQ--SLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL 539
Cdd:TIGR02168 680 eeleeKIEELEEKIAELEKALAELRKELEELEEelEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTEL 759
|
570 580 590 600
....*....|....*....|....*....|....*....|..
gi 568987552 540 ELSASKKKKTQEEVMALKREKDRLVHQLKQQTQNRMKLMADN 581
Cdd:TIGR02168 760 EAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKAL 801
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
46-521 |
7.07e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 52.37 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 46 IEMKDTKIASLERNIRDLEDEVQMLKANgVLNTEDREEEI----KQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQT 121
Cdd:PRK03918 202 LEEVLREINEISSELPELREELEKLEKE-VKELEELKEEIeeleKELESLEGSKRKLEEKIRELEERIEELKKEIEELEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 122 KLETLSNQNSDCKQHIEV--LKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDM 199
Cdd:PRK03918 281 KVKELKELKEKAEEYIKLseFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEER 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 200 LEVKERkINVLQKKIENLQEQLRDK-----DKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLK------- 267
Cdd:PRK03918 361 HELYEE-AKAKKEELERLKKRLTGLtpeklEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKkakgkcp 439
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 268 --------EQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQ 339
Cdd:PRK03918 440 vcgrelteEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEE 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 340 KKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK-DKKIAELES 418
Cdd:PRK03918 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEElEERLKELEP 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 419 LTLRHMKDQNKKVANLKYNQQLEKKKNA------------QLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATK 486
Cdd:PRK03918 600 FYNEYLELKDAEKELEREEKELKKLEEEldkafeelaeteKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLR 679
|
490 500 510
....*....|....*....|....*....|....*
gi 568987552 487 ARLASTQQSLAEKEAHLANLRIERRKQLEEILEMK 521
Cdd:PRK03918 680 AELEELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
249-572 |
7.57e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 52.38 E-value: 7.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 249 LATLEEALSEKERIIERLKEQRERDDR------ERLEEIESFRKEnKDLKEKVNALQAELTEKESSLI--DLKEHASSLA 320
Cdd:TIGR02169 162 IAGVAEFDRKKEKALEELEEVEENIERldliidEKRQQLERLRRE-REKAERYQALLKEKREYEGYELlkEKEALERQKE 240
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 321 saglKRDSKLKSLEIAIEQKKEECNKLEAQLkkaHNIEDDSRmnpEFADRLKQL-DKEASYYRDECGKAQAEVDRLLEIL 399
Cdd:TIGR02169 241 ----AIERQLASLEEELEKLTEEISELEKRL---EEIEQLLE---ELNKKIKDLgEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 400 KEVENEKNDKDKKIAELESLTLRhmkdQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMNALEKTR 479
Cdd:TIGR02169 311 AEKERELEDAEERLAKLEAEIDK----LLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRA--ELEEVDKEFAETR 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 480 QELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEaLLAAISEKDANIALLELSASKKKKTQEEVMALKRE 559
Cdd:TIGR02169 385 DELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAA-IAGIEAKINELEEEKEDKALEIKKQEWKLEQLAAD 463
|
330
....*....|...
gi 568987552 560 KDRLVHQLKQQTQ 572
Cdd:TIGR02169 464 LSKYEQELYDLKE 476
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
41-283 |
9.51e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 51.30 E-value: 9.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 41 ALQTVIEMKDTKIASLERNIRDLEDEVQMLKANgvlnTEDREEEIKQIEvykshskfmkTKIDQLKQELSKKESELLALQ 120
Cdd:COG4942 17 AQADAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALE----------RRIAALARRIRALEQELAALE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 121 TKLETLSNQNSDCKQHIEVLKESLtAKEQRAAILQTEVDALRLRLEEKESF-LNKKTKQLQDLTEEKGTLAGEIRDMKDM 199
Cdd:COG4942 83 AELAELEKEIAELRAELEAQKEEL-AELLRALYRLGRQPPLALLLSPEDFLdAVRRLQYLKYLAPARREQAEELRADLAE 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 200 LEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLE 279
Cdd:COG4942 162 LAALRAELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAE 241
|
....
gi 568987552 280 EIES 283
Cdd:COG4942 242 RTPA 245
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
101-305 |
1.46e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.45 E-value: 1.46e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 101 KIDQLKQELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEekesfLNKKTKQLQ 180
Cdd:COG4913 611 KLAALEAELAELEEELAEAEERLEAL-------EAELDALQERREALQRLAEYSWDEIDVASAERE-----IAELEAELE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 181 DLTEEKGTLAGeirdMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEkE 260
Cdd:COG4913 679 RLDASSDDLAA----LEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLE-E 753
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 568987552 261 RIIERLKEQRERDDRERLEEiesfrkENKDLKEKVNALQAELTEK 305
Cdd:COG4913 754 RFAAALGDAVERELRENLEE------RIDALRARLNRAEEELERA 792
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
79-304 |
1.84e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.84e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 79 EDREEEIKQIE-VYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTE 157
Cdd:COG4913 245 EDAREQIELLEpIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREE 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 158 VDALRLRLeekesfLNKKTKQLQDLTEekgtlagEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKS 237
Cdd:COG4913 325 LDELEAQI------RGNGGDRLEQLER-------EIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAAA 391
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568987552 238 LQTDSsntDTALATLEEALSEKERIIERLKEQRerddRERLEEIESFRKENKDLKEKVNALQAELTE 304
Cdd:COG4913 392 LLEAL---EEELEALEEALAEAEAALRDLRREL----RELEAEIASLERRKSNIPARLLALRDALAE 451
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
83-294 |
1.97e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.78 E-value: 1.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 83 EEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLET----------LSNQNSDCKQHI--EVLKESLTAKEQR 150
Cdd:PHA02562 157 EDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTynknieeqrkKNGENIARKQNKydELVEEAKTIKAEI 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 151 AAiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGE----------------IRDMKDMLEVKERKINVLQKKI 214
Cdd:PHA02562 237 EE-LTDELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVikmyekggvcptctqqISEGPDRITKIKDKLKELQHSL 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 215 ENL---QEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDrerlEEIESFRKENKDL 291
Cdd:PHA02562 316 EKLdtaIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA----EELAKLQDELDKI 391
|
...
gi 568987552 292 KEK 294
Cdd:PHA02562 392 VKT 394
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
214-416 |
2.14e-06 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 50.70 E-value: 2.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 214 IENLQE----QLRDKDKQLTNLKDR-VKSLQTDSSNtdtALATLEEALSEKERIIERLKEQRERDDRERLEEIESF---- 284
Cdd:PRK05771 22 LEALHElgvvHIEDLKEELSNERLRkLRSLLTKLSE---ALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEEleki 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 285 RKENKDLKEKVNALQAELTEKES-------------SLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKlEAQL 351
Cdd:PRK05771 99 EKEIKELEEEISELENEIKELEQeierlepwgnfdlDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYIS-TDKG 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 352 KKAHNIEDDSRMNPEFADRLKQLDKEAsYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAEL 416
Cdd:PRK05771 178 YVYVVVVVLKELSDEVEEELKKLGFER-LELEEEGTPSELIREIKEELEEIEKERESLLEELKEL 241
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
231-478 |
2.36e-06 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 50.40 E-value: 2.36e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 231 LKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLI 310
Cdd:PHA02562 172 NKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIE 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 311 DLKEHAsslasaglkrdSKLKSLEIAIEQKKEECNKLEAQLKKAH-------NIEDDSRMNPEFADRLKQLDKEASyyrd 383
Cdd:PHA02562 252 DPSAAL-----------NKLNTAAAKIKSKIEQFQKVIKMYEKGGvcptctqQISEGPDRITKIKDKLKELQHSLE---- 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 384 ecgkaqaEVDRLLEILKEVENEKNDKDKKIAELesltlrhmkdqNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNS 463
Cdd:PHA02562 317 -------KLDTAIDELEEIMDEFNEQSKKLLEL-----------KNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNA 378
|
250
....*....|....*
gi 568987552 464 QhlQIEELMNALEKT 478
Cdd:PHA02562 379 E--ELAKLQDELDKI 391
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
105-557 |
2.86e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 50.45 E-value: 2.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 105 LKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESF---LNKKTKQLQD 181
Cdd:PRK03918 170 VIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELkeeIEELEKELES 249
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 182 LTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEqLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKER 261
Cdd:PRK03918 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKE-LKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEE 328
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 262 IIERLKEQRERdDRERLEEIESFRKENKDLKEKVNALQaELTEKESSLIDLKEHASSLASAGLKRdsKLKSLEIAIEQKK 341
Cdd:PRK03918 329 RIKELEEKEER-LEELKKKLKELEKRLEELEERHELYE-EAKAKKEELERLKKRLTGLTPEKLEK--ELEELEKAKEEIE 404
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 342 EECNKLEAQLKKAHNIEDDSRMNPEFADRLK--------QLDKE-----ASYYRDECGKAQAEVDRLLEILKEVENEKND 408
Cdd:PRK03918 405 EEISKITARIGELKKEIKELKKAIEELKKAKgkcpvcgrELTEEhrkelLEEYTAELKRIEKELKEIEEKERKLRKELRE 484
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 409 KDKKIA-ELESLTLRHMKDQNKKVANLKYNQQLEK-KKNAQLLEEVRRREDSMvdNSQHLQIEELMNALEKTRQELDATK 486
Cdd:PRK03918 485 LEKVLKkESELIKLKELAEQLKELEEKLKKYNLEElEKKAEEYEKLKEKLIKL--KGEIKSLKKELEKLEELKKKLAELE 562
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568987552 487 ARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALK 557
Cdd:PRK03918 563 KKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
29-353 |
3.02e-06 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 50.40 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 29 RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEV-------YKSHSKFMKTK 101
Cdd:TIGR04523 313 KSELKNQEKKLEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKlkkenqsYKQEIKNLESQ 392
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 102 IDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQD 181
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKNLDNTRESLETQLKV 472
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 182 LTeekgtlaGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKER 261
Cdd:TIGR04523 473 LS-------RSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLED 545
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 262 IIERLKEQRERDDRErlEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKK 341
Cdd:TIGR04523 546 ELNKDDFELKKENLE--KEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAK 623
|
330
....*....|..
gi 568987552 342 EECNKLEAQLKK 353
Cdd:TIGR04523 624 KENEKLSSIIKN 635
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
406-523 |
3.39e-06 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 50.16 E-value: 3.39e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 406 KNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLE-----KKKNAQLLEEVRRREDSMVDNSQHLQIEEL-----MNAL 475
Cdd:PRK12704 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEakeeiHKLRNEFEKELRERRNELQKLEKRLLQKEEnldrkLELL 105
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 568987552 476 EKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQE 523
Cdd:PRK12704 106 EKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAE 153
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
165-552 |
6.53e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 49.38 E-value: 6.53e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 165 LEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQ--KKIENLQEQLRDKDKQLTNLKDRVKSLQTDS 242
Cdd:COG4717 83 AEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPlyQELEALEAELAELPERLEELEERLEELRELE 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 243 SNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEH------- 315
Cdd:COG4717 163 EELEELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENEleaaale 242
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 316 ------------ASSLASAGLKRDSKLKSLE---------------IAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFA 368
Cdd:COG4717 243 erlkearlllliAAALLALLGLGGSLLSLILtiagvlflvlgllalLFLLLAREKASLGKEAEELQALPALEELEEEELE 322
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 369 DRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELES---LTLRHMKDQNKKVANLKYNQQLEKKKN 445
Cdd:COG4717 323 ELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIaalLAEAGVEDEEELRAALEQAEEYQELKE 402
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 446 --AQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRK-QLEEILEMKQ 522
Cdd:COG4717 403 elEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREELAELEAELEQLEEDGELaELLQELEELK 482
|
410 420 430
....*....|....*....|....*....|
gi 568987552 523 EALLAAISEKDANIALLELSASKKKKTQEE 552
Cdd:COG4717 483 AELRELAEEWAALKLALELLEEAREEYREE 512
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
46-306 |
1.19e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 1.19e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 46 IEMKDTKIASLERNIRDLEDEVQMLKANgVLNTEDREEEIKQIEVYKSHSKFMKT---KIDQLKQELSKKE---SELLAL 119
Cdd:COG4913 612 LAALEAELAELEEELAEAEERLEALEAE-LDALQERREALQRLAEYSWDEIDVASaerEIAELEAELERLDassDDLAAL 690
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 120 QTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFlnKKTKQLQDLTEEKGTLAGEiRDMKDM 199
Cdd:COG4913 691 EEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDL--ARLELRALLEERFAAALGD-AVEREL 767
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 200 LEVKERKINVLQKKIENLQEQLRDKdkqltnLKDRVKSLQTDSSNTDTALATLEEALSEKERII--------ERLKEQRE 271
Cdd:COG4913 768 RENLEERIDALRARLNRAEEELERA------MRAFNREWPAETADLDADLESLPEYLALLDRLEedglpeyeERFKELLN 841
|
250 260 270
....*....|....*....|....*....|....*.
gi 568987552 272 RDDRERLEEIES-FRKENKDLKEKVNALQAELTEKE 306
Cdd:COG4913 842 ENSIEFVADLLSkLRRAIREIKERIDPLNDSLKRIP 877
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
138-287 |
1.20e-05 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 48.32 E-value: 1.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 138 EVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQdlteekgtlaGEIRDMKDMLEVKERKINVLQKKIENL 217
Cdd:COG2433 384 ELIEKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLE----------AEVEELEAELEEKDERIERLERELSEA 453
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568987552 218 QEQLRD---KDKQLTNLKDRVKSLQTDssntdtaLATLEEALSEKERIIERLKEQRERDDRERLE---EIESFRKE 287
Cdd:COG2433 454 RSEERReirKDREISRLDREIERLERE-------LEEERERIEELKRKLERLKELWKLEHSGELVpvkVVEKFTKE 522
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
41-580 |
2.81e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 47.37 E-value: 2.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 41 ALQTVIEMKDTKIASLERNIRDLEDEVqmlkangvlntEDREEEIKQIEVykshskfmktKIDQLKQELSKKESELLALQ 120
Cdd:TIGR02169 291 RVKEKIGELEAEIASLERSIAEKEREL-----------EDAEERLAKLEA----------EIDKLLAEIEELEREIEEER 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 121 TKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDML 200
Cdd:TIGR02169 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAI 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 201 EVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQReRDDRERLEE 280
Cdd:TIGR02169 430 AGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQA-RASEERVRG 508
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 281 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASS--------------------LASAGLKRDSKLKSLEIAIEQK 340
Cdd:TIGR02169 509 GRAVEEVLKASIQGVHGTVAQLGSVGERYATAIEVAAGnrlnnvvveddavakeaielLKRRKAGRATFLPLNKMRDERR 588
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 341 KEECNKLEAQLKKAHN-IEDDSRMNPEFAD---------------------RLKQLDKE--------ASYYRDECGKA-- 388
Cdd:TIGR02169 589 DLSILSEDGVIGFAVDlVEFDPKYEPAFKYvfgdtlvvedieaarrlmgkyRMVTLEGElfeksgamTGGSRAPRGGIlf 668
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 389 ----QAEVDRLLEILKEVENEKNDKDKKIAELESLT---LRHMKDQNKKVANLKYNQQL---EKKKNAQLLEEVRRR--- 455
Cdd:TIGR02169 669 srsePAELQRLRERLEGLKRELSSLQSELRRIENRLdelSQELSDASRKIGEIEKEIEQleqEEEKLKERLEELEEDlss 748
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 456 --------EDSMVDNS-----QHLQIEELMNALE------------KTRQELDATKARLASTQQSLAEKEAHLaNLRIER 510
Cdd:TIGR02169 749 leqeienvKSELKELEarieeLEEDLHKLEEALNdlearlshsripEIQAELSKLEEEVSRIEARLREIEQKL-NRLTLE 827
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 511 RKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEV--------------MALKREKDRLVHQLKQQTQNRMK 576
Cdd:TIGR02169 828 KEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELeeleaalrdlesrlGDLKKERDELEAQLRELERKIEE 907
|
....
gi 568987552 577 LMAD 580
Cdd:TIGR02169 908 LEAQ 911
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
98-400 |
2.87e-05 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 46.82 E-value: 2.87e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 98 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 177
Cdd:COG4372 43 LQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQK 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRV------KSLQTDSSNTDTALAT 251
Cdd:COG4372 123 ERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAALEQELQALSEAEaeqaldELLKEANRNAEKEEEL 202
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 252 LEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLK 331
Cdd:COG4372 203 AEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAA 282
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568987552 332 SLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK 400
Cdd:COG4372 283 LELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLELALAILLAELADLLQLLLVGLL 351
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
159-413 |
2.93e-05 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 47.20 E-value: 2.93e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 159 DALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKK----IENLQEQLRDKDKqltnLKDR 234
Cdd:PLN02939 96 DHNRASMQRDEAIAAIDNEQQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQArlqaLEDLEKILTEKEA----LQGK 171
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 235 VKSLQTDSSNTDTALAtleeaLSEKERI-IERLKEQRERDDRERL--------------EEIESFRKENKDLKEKVNALQ 299
Cdd:PLN02939 172 INILEMRLSETDARIK-----LAAQEKIhVEILEEQLEKLRNELLirgateglcvhslsKELDVLKEENMLLKDDIQFLK 246
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 300 AELT------------EKESSLID--LKEHASSLASAglkRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRM-- 363
Cdd:PLN02939 247 AELIevaeteervfklEKERSLLDasLRELESKFIVA---QEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALvl 323
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 364 --NPEFADRLKQLD---KEASYYRDECGKaqaeVDRLLEILKEVENEKNDKDKKI 413
Cdd:PLN02939 324 dqNQDLRDKVDKLEaslKEANVSKFSSYK----VELLQQKLKLLEERLQASDHEI 374
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
265-541 |
3.06e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.36 E-value: 3.06e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 265 RLKEQRERDD-RERLEEIESfrkENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEE 343
Cdd:TIGR02168 672 ILERRREIEElEEKIEELEE---KIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEER 748
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 344 CNKLEAQLKKAHNIEDdsrmnpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltlRH 423
Cdd:TIGR02168 749 IAQLSKELTELEAEIE------ELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLN----EE 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 424 MKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSqhLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHL 503
Cdd:TIGR02168 819 AANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLA--AEIEELEELIEELESELEALLNERASLEEALALLRSEL 896
|
250 260 270
....*....|....*....|....*....|....*...
gi 568987552 504 ANLRIERRKQLEEILEMKQEALLAAISEKDANIALLEL 541
Cdd:TIGR02168 897 EELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934
|
|
| PTZ00108 |
PTZ00108 |
DNA topoisomerase 2-like protein; Provisional |
49-343 |
4.85e-05 |
|
DNA topoisomerase 2-like protein; Provisional
Pssm-ID: 240271 [Multi-domain] Cd Length: 1388 Bit Score: 46.58 E-value: 4.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 49 KDTKIASLERNIRDLEDEVQMLKA--NGVLNT-----EDREEEIKQIEvYKSHSKFMKTKIDQLKQELSKKESELLALQT 121
Cdd:PTZ00108 997 KEYLLGKLERELARLSNKVRFIKHviNGELVItnakkKDLVKELKKLG-YVRFKDIIKKKSEKITAEEEEGAEEDDEADD 1075
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 122 KLETLSNQNSDC-------------KQHIEVLKESLTAKEQRAAILQ---------TEVDALRLRLEEKESFLNKKTKQL 179
Cdd:PTZ00108 1076 EDDEEELGAAVSydyllsmpiwsltKEKVEKLNAELEKKEKELEKLKnttpkdmwlEDLDKFEEALEEQEEVEEKEIAKE 1155
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 180 QDLTEEKGTLAGEIRDMKDMLEVKERKIN----------VLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTAL 249
Cdd:PTZ00108 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSsadkskkasvVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKP 1235
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 250 ATLEEALSEKERIIERLKEQRERDDRERLEEIESFRkenKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSK 329
Cdd:PTZ00108 1236 KKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKP---KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKK 1312
|
330
....*....|....*
gi 568987552 330 -LKSLEIAIEQKKEE 343
Cdd:PTZ00108 1313 rLEGSLAALKKKKKS 1327
|
|
| 46 |
PHA02562 |
endonuclease subunit; Provisional |
3-244 |
5.18e-05 |
|
endonuclease subunit; Provisional
Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 46.16 E-value: 5.18e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 3 LNRSVQTCFCSKMPCEQQICSHELHRRSQlqpePAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDRE 82
Cdd:PHA02562 179 LNQQIQTLDMKIDHIQQQIKTYNKNIEEQ----RKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPS 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 83 EEIKQIEVYKSHskfMKTKIDQLKQELskkesellalqtKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALR 162
Cdd:PHA02562 255 AALNKLNTAAAK---IKSKIEQFQKVI------------KMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLD 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 163 LRLEEkesfLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDS 242
Cdd:PHA02562 320 TAIDE----LEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTK 395
|
..
gi 568987552 243 SN 244
Cdd:PHA02562 396 SE 397
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
98-334 |
6.34e-05 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 45.89 E-value: 6.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 98 MKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTK 177
Cdd:pfam05557 18 KKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNKKLNEKES 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA---LATLEE 254
Cdd:pfam05557 98 QLADAREVISCLKNELSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQSSLAEAeqrIKELEF 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 255 ALSEKERIIERLKEQRERDDR--------ERLEEIESFRKENKD----LKEKVNALQAELTEKEssliDLKEHASSLASA 322
Cdd:pfam05557 178 EIQSQEQDSEIVKNSKSELARipelekelERLREHNKHLNENIEnkllLKEEVEDLKRKLEREE----KYREEAATLELE 253
|
250
....*....|..
gi 568987552 323 GLKRDSKLKSLE 334
Cdd:pfam05557 254 KEKLEQELQSWV 265
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
29-231 |
7.10e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 45.53 E-value: 7.10e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 29 RSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKAngvlNTEDREEEIKQIEvykshskfmkTKIDQLKQE 108
Cdd:COG4942 40 EKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEA----ELAELEKEIAELR----------AELEAQKEE 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 109 LSK--KESELLALQTKLETLSNQNS--DCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTE 184
Cdd:COG4942 106 LAEllRALYRLGRQPPLALLLSPEDflDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELEE 185
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 568987552 185 EKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNL 231
Cdd:COG4942 186 ERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARL 232
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
204-382 |
7.11e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 7.11e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 204 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSntdtALATLEEALsekERIIERLKEQRERDD-RERLEEIE 282
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAELDALQERRE----ALQRLAEYS---WDEIDVASAEREIAElEAELERLD 681
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 283 SFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEECNKLEAQLKKAHNIEdDSR 362
Cdd:COG4913 682 ASSDDLAALEEQLEELEAELEELEEELDELKG--------------EIGRLEKELEQAEEELDELQDRLEAAEDLA-RLE 746
|
170 180
....*....|....*....|
gi 568987552 363 MNPEFADRLKQLDKEASYYR 382
Cdd:COG4913 747 LRALLEERFAAALGDAVERE 766
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
37-265 |
8.02e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 45.78 E-value: 8.02e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 37 AKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKA-NGVLNTEDREEEIKQievykshskfmktKIDQLKQELSKKESE 115
Cdd:COG3206 168 LRREEARKALEFLEEQLPELRKELEEAEAALEEFRQkNGLVDLSEEAKLLLQ-------------QLSELESQLAEARAE 234
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 116 LLALQTKLETLSNQNSDCKQHIEVLKES--LTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEkgtLAGEI 193
Cdd:COG3206 235 LAEAEARLAALRAQLGSGPDALPELLQSpvIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQ---LQQEA 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 194 RDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT----DTALATLEEALSEKE------RII 263
Cdd:COG3206 312 QRILASLEAELEALQAREASLQAQLAQLEARLAELPELEAELRRLEREVEVArelyESLLQRLEEARLAEAltvgnvRVI 391
|
..
gi 568987552 264 ER 265
Cdd:COG3206 392 DP 393
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
52-559 |
8.51e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 8.51e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 52 KIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNS 131
Cdd:TIGR02169 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEAQARASEERVR 507
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 132 DCKQHIEVLKESLTA-----------KEQRAAILQTEVDAlRLRLEEKESFLNKKtKQLQDLTEEKGTLAG--EIRDMKD 198
Cdd:TIGR02169 508 GGRAVEEVLKASIQGvhgtvaqlgsvGERYATAIEVAAGN-RLNNVVVEDDAVAK-EAIELLKRRKAGRATflPLNKMRD 585
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 199 MLEVKERkinVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTA--------LATLEEALSEKERII---ERLK 267
Cdd:TIGR02169 586 ERRDLSI---LSEDGVIGFAVDLVEFDPKYEPAFKYVFGDTLVVEDIEAArrlmgkyrMVTLEGELFEKSGAMtggSRAP 662
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 268 EQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKL 347
Cdd:TIGR02169 663 RGGILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEEL 742
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 348 EAQLKK-AHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRllEILKEVENEKNDKDKKIAELESLTlrhmKD 426
Cdd:TIGR02169 743 EEDLSSlEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAELSKLEEEVSRIEARL----RE 816
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 427 QNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQhlQIEELMNALEKTRQELDATKARLAstqqSLAEKEAHLANL 506
Cdd:TIGR02169 817 IEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEK--EIENLNGKKEELEEELEELEAALR----DLESRLGDLKKE 890
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|...
gi 568987552 507 RIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKRE 559
Cdd:TIGR02169 891 RDELEAQLRE-LERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
105-239 |
9.81e-05 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 44.96 E-value: 9.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 105 LKQELSKKESELLALQTKLETLSNQnsdckqhievlkesLTAKEQRAAILQTEVDALRLRLEEKES-------FLNKKTK 177
Cdd:PRK09039 44 LSREISGKDSALDRLNSQIAELADL--------------LSLERQGNQDLQDSVANLRASLSAAEAersrlqaLLAELAG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 QLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQL------------RDKDKQL----------TNLKDRV 235
Cdd:PRK09039 110 AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLaaleaaldasekRDRESQAkiadlgrrlnVALAQRV 189
|
....
gi 568987552 236 KSLQ 239
Cdd:PRK09039 190 QELN 193
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
204-353 |
9.84e-05 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 9.84e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 204 ERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQ-------RERDDRE 276
Cdd:COG1579 16 DSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEEQlgnvrnnKEYEALQ 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 277 RleEIESFRKENKDLKEKVNALQAELTEKESSLID----LKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK 352
Cdd:COG1579 96 K--EIESLKRRISDLEDEILELMERIEELEEELAEleaeLAELEAELEEKKAELDEELAELEAELEELEAEREELAAKIP 173
|
.
gi 568987552 353 K 353
Cdd:COG1579 174 P 174
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
81-498 |
1.45e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 45.13 E-value: 1.45e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 81 REEEIKQIEVYKSHSKFMKTKIDQLKQ--ELSKKESEllalQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEV 158
Cdd:PTZ00121 1406 KADELKKAAAAKKKADEAKKKAEEKKKadEAKKKAEE----AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 159 DALRLRLEEKESFLNKKTKQLQDLTEEKGTlAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSL 238
Cdd:PTZ00121 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKK-ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 239 QTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASS 318
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 319 LASAGLKRDSKLKSLEIAIEQKKEE-CNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYrDECGKAQAEVDRLLE 397
Cdd:PTZ00121 1641 KEAEEKKKAEELKKAEEENKIKAAEeAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA-EELKKKEAEEKKKAE 1719
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 398 ILKEVENEKNDKDKKiaelesltLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEK 477
Cdd:PTZ00121 1720 ELKKAEEENKIKAEE--------AKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
410 420
....*....|....*....|.
gi 568987552 478 TRQELDATKARLASTQQSLAE 498
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIE 1812
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
103-421 |
1.80e-04 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 44.12 E-value: 1.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 103 DQLKQELSKKESELLALQTKLETL----SNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:COG4372 2 DRLGEKVGKARLSLFGLRPKTGILiaalSEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEE 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSE 258
Cdd:COG4372 82 LEELNEQLQAAQAELAQAQEELESLQEEAEELQEELEELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLES 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 259 KERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIE 338
Cdd:COG4372 162 LQEELAALEQELQALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDA 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 339 QKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELES 418
Cdd:COG4372 242 LELEEDKEELLEEVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAAL 321
|
...
gi 568987552 419 LTL 421
Cdd:COG4372 322 LEL 324
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
316-552 |
1.89e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 43.98 E-value: 1.89e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 316 ASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRmnpefaDRLKQLDKEASYYRDECGKAQAEVDRL 395
Cdd:COG4942 15 AAAQADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALE------RRIAALARRIRALEQELAALEAELAEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 396 LEILKEVENEKNDKDKKIAELESLTLRhMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRRedsmvDNSQHLQIEELMNAL 475
Cdd:COG4942 89 EKEIAELRAELEAQKEELAELLRALYR-LGRQPPLALLLSPEDFLDAVRRLQYLKYLAPA-----RREQAEELRADLAEL 162
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568987552 476 EKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEE 552
Cdd:COG4942 163 AALRAELEAERAELEALLAELEEERAALEALKAERQKLLAR-LEKELAELAAELAELQQEAEELEALIARLEAEAAA 238
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
61-480 |
2.36e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 44.27 E-value: 2.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 61 RDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHI--- 137
Cdd:TIGR00606 691 AELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIeeq 770
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 138 EVLKESLTAKEQRAAILQTEV---DALRLRLEEKESFLNKKTKQLQ--DLTEEKGTLAGEIRDMKDMLEVKERKINVLQK 212
Cdd:TIGR00606 771 ETLLGTIMPEEESAKVCLTDVtimERFQMELKDVERKIAQQAAKLQgsDLDRTVQQVNQEKQEKQHELDTVVSKIELNRK 850
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 213 KIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQR----------ERDDRERLEEIE 282
Cdd:TIGR00606 851 LIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKeqdspletflEKDQQEKEELIS 930
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 283 SFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKrdsklksleiaieQKKEECNKLEAQLKKahNIEDDSR 362
Cdd:TIGR00606 931 SKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK-------------QKETELNTVNAQLEE--CEKHQEK 995
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 363 MNPEFadRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLtlrHMKDQNKKVANlkyNQQLEK 442
Cdd:TIGR00606 996 INEDM--RLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVL---QMKQEHQKLEE---NIDLIK 1067
|
410 420 430
....*....|....*....|....*....|....*...
gi 568987552 443 KKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQ 480
Cdd:TIGR00606 1068 RNHVLALGRQKGYEKEIKHFKKELREPQFRDAEEKYRE 1105
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
140-351 |
2.64e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 44.24 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 140 LKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktKQLQDLTEEKGTLAGEirdmkdmlevkeRKINVLQKKIENLQE 219
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAE-------AALEEFRQKNGLVDLS------------EEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 220 QLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEAlsekeRIIERLKEQRERDDRERLEEIESFRKEN---KDLKEKVN 296
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQS-----PVIQQLRAQLAELEAELAELSARYTPNHpdvIALRAQIA 301
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568987552 297 ALQAEL-TEKESSLIDLKEHASSLASaglkRDSKLKSLEIAIEQKKEECNKLEAQL 351
Cdd:COG3206 302 ALRAQLqQEAQRILASLEAELEALQA----REASLQAQLAQLEARLAELPELEAEL 353
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
28-346 |
2.68e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.24 E-value: 2.68e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 28 RRSQLQPEPAKTKALQTVIEMKDTKIASLERNIRDLEDEVQMLKangvlntEDREEEIKQIEVYKSHSKFMKTKIDQLKQ 107
Cdd:TIGR04523 361 KQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQE-------KLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 108 ELSKKESEllalqtkLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKG 187
Cdd:TIGR04523 434 TIIKNNSE-------IKDLTNQDSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKK 506
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 188 TLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdtalatLEEALSEKERIIERLK 267
Cdd:TIGR04523 507 ELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISDLEDELNKDDFELKKEN------------LEKEIDEKNKEIEELK 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 268 EQR---ERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEEC 344
Cdd:TIGR04523 575 QTQkslKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSSIIKNIKSKKNKLKQEVKQIKETI 654
|
..
gi 568987552 345 NK 346
Cdd:TIGR04523 655 KE 656
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
98-297 |
3.07e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 42.60 E-value: 3.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 98 MKTKIDQLKqELSKKESELLALQTKLETLsnqnsdcKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLnkktK 177
Cdd:COG1579 2 MPEDLRALL-DLQELDSELDRLEHRLKEL-------PAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEI----E 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 QLQDLTEEKGTLAGEIRDMKDMlevkerkiNVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtdssntdTALATLEEALS 257
Cdd:COG1579 70 EVEARIKKYEEQLGNVRNNKEY--------EALQKEIESLKRRISDLEDEILELMERIEELE-------EELAELEAELA 134
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568987552 258 EKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNA 297
Cdd:COG1579 135 ELEAELEEKKAELDEELAELEAELEELEAEREELAAKIPP 174
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
82-570 |
3.29e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 43.86 E-value: 3.29e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 82 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDAL 161
Cdd:TIGR04523 36 KQLEKKLKTIKNELKNKEKELKNLDKNLNKDEEKINNSNNKIKILEQQIKDLNDKLKKNKDKINKLNSDLSKINSEIKND 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 162 RLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQeqlrdkdKQLTNLKDRVKSLQTD 241
Cdd:TIGR04523 116 KEQKNKLEVELNKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELE-------NELNLLEKEKLNIQKN 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 242 SSNTDTALATLEEALSEKERIIERLKEQreRDDRERLEEIESFRKENKDLK-EKVNALQAELTEKESSLIDLKEHASSLA 320
Cdd:TIGR04523 189 IDKIKNKLLKLELLLSNLKKKIQKNKSL--ESQISELKKQNNQLKDNIEKKqQEINEKTTEISNTQTQLNQLKDEQNKIK 266
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 321 SAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAHNiEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILK 400
Cdd:TIGR04523 267 KQLSEKQKELEQNNKKIKELEKQLNQLKSEISDLNN-QKEQDWNKELKSELKNQEKKLEEIQNQISQNNKIISQLNEQIS 345
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 401 EVENEKNDKD----KKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALE 476
Cdd:TIGR04523 346 QLKKELTNSEsensEKQRELEEKQNEIEKLKKENQSYKQEIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLE 425
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 477 KTRQELDATKARLASTQQSLAEKEAHLaNLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMAL 556
Cdd:TIGR04523 426 KEIERLKETIIKNNSEIKDLTNQDSVK-ELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEE 504
|
490
....*....|....
gi 568987552 557 KREKDRLVHQLKQQ 570
Cdd:TIGR04523 505 KKELEEKVKDLTKK 518
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
89-581 |
3.35e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.95 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 89 EVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTA----KEQRAAILQTEVDALRLR 164
Cdd:pfam15921 99 ELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLRNQLQNTVHELEAakclKEDMLEDSNTQIEQLRKM 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 165 LEEKESFLNKKTKQLQDLTEEKGTlagEIRDMKDMLEVKERKINVLQKKIenlqeqLRDKDKQLTNLK-------DRVKS 237
Cdd:pfam15921 179 MLSHEGVLQEIRSILVDFEEASGK---KIYEHDSMSTMHFRSLGSAISKI------LRELDTEISYLKgrifpveDQLEA 249
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 238 LQTDSSNTdtalatLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIdlkEHAS 317
Cdd:pfam15921 250 LKSESQNK------IELLLQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYM---RQLS 320
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 318 SLASAGLKRDSKLKSLEIAIEQKKEEcnkLEAQLKKAHNIEDDSRMNPEfadrlkQLDKEASYYRDECGKAQAEV-DRLL 396
Cdd:pfam15921 321 DLESTVSQLRSELREAKRMYEDKIEE---LEKQLVLANSELTEARTERD------QFSQESGNLDDQLQKLLADLhKREK 391
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 397 EILKEVENEKNDKDKKIAEleSLTLRHMK----DQNKKVANLK-----YNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQ 467
Cdd:pfam15921 392 ELSLEKEQNKRLWDRDTGN--SITIDHLRreldDRNMEVQRLEallkaMKSECQGQMERQMAAIQGKNESLEKVSSLTAQ 469
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 468 IEELMNALEKTRQELDATKARLASTQQSLAEKEAHLanlriERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKK 547
Cdd:pfam15921 470 LESTKEMLRKVVEELTAKKMTLESSERTVSDLTASL-----QEKERAIEATNAEITKLRSRVDLKLQELQHLKNEGDHLR 544
|
490 500 510
....*....|....*....|....*....|....*..
gi 568987552 548 KTQEEVMALK---REKDRLVHQLKQQTQNRMKLMADN 581
Cdd:pfam15921 545 NVQTECEALKlqmAEKDKVIEILRQQIENMTQLVGQH 581
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
226-418 |
3.69e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.75 E-value: 3.69e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 226 KQLTNLKDRVKSLQTDSSNTDTALATLEE---ALSEKERIIERLKEQRE---------------RDDRERLE-------- 279
Cdd:COG4913 204 KPIGDLDDFVREYMLEEPDTFEAADALVEhfdDLERAHEALEDAREQIEllepirelaeryaaaRERLAELEylraalrl 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 280 ------------EIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasSLASAGLKR----DSKLKSLEIAIEQKKEE 343
Cdd:COG4913 284 wfaqrrlelleaELEELRAELARLEAELERLEARLDALREELDELEA---QIRGNGGDRleqlEREIERLERELEERERR 360
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 344 CNKLEAQLKKAHNIEDDSRmnPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELES 418
Cdd:COG4913 361 RARLEALLAALGLPLPASA--EEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
131-313 |
3.95e-04 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 43.75 E-value: 3.95e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 131 SDCKQHIEVLKESLTAKEQRAAILQTevdalrlrLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMlevkerkinvl 210
Cdd:PRK11281 39 ADVQAQLDALNKQKLLEAEDKLVQQD--------LEQTLALLDKIDRQKEETEQLKQQLAQAPAKLRQA----------- 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 211 QKKIENLQEQLRDKDKQlTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRE------RLEEIESF 284
Cdd:PRK11281 100 QAELEALKDDNDEETRE-TLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAAlyansqRLQQIRNL 178
|
170 180
....*....|....*....|....*....
gi 568987552 285 RKENKDLKEKVNALQAELTEKESSLIDLK 313
Cdd:PRK11281 179 LKGGKVGGKALRPSQRVLLQAEQALLNAQ 207
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
107-426 |
4.93e-04 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 43.41 E-value: 4.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 107 QELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQ---RAAILqtEVDALRLRLEEKESFLNKKTKQLQDLT 183
Cdd:PRK04863 837 AELRQLNRRRVELERALADHESQEQQQRSQLEQAKEGLSALNRllpRLNLL--ADETLADRVEEIREQLDEAEEAKRFVQ 914
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 184 EEKGTLAgEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQ----TDSSNTDTALATLEEALSEK 259
Cdd:PRK04863 915 QHGNALA-QLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAhfsyEDAAEMLAKNSDLNEKLRQR 993
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 260 eriIERLKEQRERdDRERLEEIES-FRKENK---DLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSklKSLEI 335
Cdd:PRK04863 994 ---LEQAEQERTR-AREQLRQAQAqLAQYNQvlaSLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--DELHA 1067
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 336 AIEQKKEECNKLEAQLKKAhniedDSRMNpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAE 415
Cdd:PRK04863 1068 RLSANRSRRNQLEKQLTFC-----EAEMD-NLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDNGVERRLHRRELAY 1141
|
330
....*....|.
gi 568987552 416 LESLTLRHMKD 426
Cdd:PRK04863 1142 LSADELRSMSD 1152
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
148-355 |
5.47e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 43.37 E-value: 5.47e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 148 EQRAAILQTEVDALRlRLEEKESFLNKKTKQLQDLTE------EKGTLAGEIRDMKDMLEV--KERKINVLQKKIENLQE 219
Cdd:COG4913 224 FEAADALVEHFDDLE-RAHEALEDAREQIELLEPIRElaeryaAARERLAELEYLRAALRLwfAQRRLELLEAELEELRA 302
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 220 QLRDkdkqltnlkdrvkslqtdssnTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIEsfrKENKDLKEKVNALQ 299
Cdd:COG4913 303 ELAR---------------------LEAELERLEARLDALREELDELEAQIRGNGGDRLEQLE---REIERLERELEERE 358
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 568987552 300 AELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAH 355
Cdd:COG4913 359 RRRARLEALLAALGLPLPASAEEFAALRAEAAALLEALEEELEALEEALAEAEAAL 414
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
81-572 |
5.78e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 5.78e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 81 REEEIKQIEVYKSHSKfmkTKIDQLKQELSKKESEllALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAilQTEVDA 160
Cdd:PTZ00121 1350 AEAEAAADEAEAAEEK---AEAAEKKKEEAKKKAD--AAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAA--KKKADE 1422
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 161 LRLRLEEKESFLN-KKTKQLQDLTEEKGTLAGEIRDMKDMLEVKE--RKINVLQKKIENLQ--EQLRDKDKQLTNLKDRV 235
Cdd:PTZ00121 1423 AKKKAEEKKKADEaKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEeaKKADEAKKKAEEAKkaDEAKKKAEEAKKKADEA 1502
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 236 KSLQTDSSNTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRK--ENKDLKEKVNALQAELTEKESSLIDLK 313
Cdd:PTZ00121 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKaeELKKAEEKKKAEEAKKAEEDKNMALRK 1582
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 314 ehASSLASAGLKR-DSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNpEFADRLKQLDKEASYYRDECGKAQAEV 392
Cdd:PTZ00121 1583 --AEEAKKAEEARiEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEK-KKVEQLKKKEAEEKKKAEELKKAEEEN 1659
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 393 DRLLEILKEVENEKNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNaqllEEVRRRED-SMVDNSQHLQIEEL 471
Cdd:PTZ00121 1660 KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA----EEKKKAEElKKAEEENKIKAEEA 1735
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 472 mnaleKTRQELDATKARLASTQQSLAEKEAHlanLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQE 551
Cdd:PTZ00121 1736 -----KKEAEEDKKKAEEAKKDEEEKKKIAH---LKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNF 1807
|
490 500
....*....|....*....|.
gi 568987552 552 EVMALKREKDRLVHQLKQQTQ 572
Cdd:PTZ00121 1808 ANIIEGGKEGNLVINDSKEME 1828
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
166-551 |
6.08e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.79 E-value: 6.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 166 EEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 245
Cdd:pfam05483 229 EEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHLTKELEDIKMSLQRS 308
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 246 DTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLK 325
Cdd:pfam05483 309 MSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQK 388
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 326 RDSKLKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEI------- 398
Cdd:pfam05483 389 KSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAiktseeh 468
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 399 -LKEVENEKNDKDKKIAELESLTLR--HMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEE--LMN 473
Cdd:pfam05483 469 yLKEVEDLKTELEKEKLKNIELTAHcdKLLLENKELTQEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEmnLRD 548
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 474 ALEKTRQELdATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALL--ELSASKKKKTQE 551
Cdd:pfam05483 549 ELESVREEF-IQKGDEVKCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELhqENKALKKKGSAE 627
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
98-263 |
6.80e-04 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 42.76 E-value: 6.80e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 98 MKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievlKESLTAKEQRAAILQTEVDALRLRLEEKEsflnkktk 177
Cdd:COG0542 402 VRMEIDSKPEELDELERRLEQLEIEKEALK-------------KEQDEASFERLAELRDELAELEEELEALK-------- 460
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 178 qlQDLTEEKgTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR--------------VKSLQTDSS 243
Cdd:COG0542 461 --ARWEAEK-ELIEEIQELKEELEQRYGKIPELEKELAELEEELAELAPLLREEVTEediaevvsrwtgipVGKLLEGER 537
|
170 180
....*....|....*....|
gi 568987552 244 NTdtaLATLEEALseKERII 263
Cdd:COG0542 538 EK---LLNLEEEL--HERVI 552
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
160-469 |
7.11e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.76 E-value: 7.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 160 ALRLRLEEKESFLNKKTKQLQDLTEekgtlageirDMKDMLEvKERKINVLQKKIENlQEQLRDKDKQLTNLKdrvkslq 239
Cdd:COG5022 783 LRRLVDYELKWRLFIKLQPLLSLLG----------SRKEYRS-YLACIIKLQKTIKR-EKKLRETEEVEFSLK------- 843
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 240 tdssnTDTALATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLK------ 313
Cdd:COG5022 844 -----AEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKkslssd 918
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 314 ---------EHASSLASAGLKRDSK------------LKSLEIAIEQKKEECNKLEAQLKKAHNIEDDSR-MNPEfadrL 371
Cdd:COG5022 919 lienlefktELIARLKKLLNNIDLEegpsieyvklpeLNKLHEVESKLKETSEEYEDLLKKSTILVREGNkANSE----L 994
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 372 KQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLtLRHMKDQNKKVANLKYNQQLEkkknAQLLEE 451
Cdd:COG5022 995 KNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTEL-SILKPLQKLKGLLLLENNQLQ----ARYKAL 1069
|
330
....*....|....*...
gi 568987552 452 VRRREDSMVDNSQHLQIE 469
Cdd:COG5022 1070 KLRRENSLLDDKQLYQLE 1087
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
52-261 |
7.54e-04 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 42.61 E-value: 7.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 52 KIASLERNIRDLEDEVQMLKAngVLNTEDREEEIKQIEVYKSHSKFmktkIDQLKQELSKKESELLALQTKLETLSNQNS 131
Cdd:PRK05771 44 RLRKLRSLLTKLSEALDKLRS--YLPKLNPLREEKKKVSVKSLEEL----IKDVEEELEKIEKEIKELEEEISELENEIK 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 132 DCKQHIEVLK--ESLTAKEQRA-----------AILQTEVDALRLRLEEKESFLNKKTKQ-----LQDLTEEKGTLAGEI 193
Cdd:PRK05771 118 ELEQEIERLEpwGNFDLDLSLLlgfkyvsvfvgTVPEDKLEELKLESDVENVEYISTDKGyvyvvVVVLKELSDEVEEEL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 194 RDM-------------KDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKdrvkslqtdssntdtaLATLEEALSEKE 260
Cdd:PRK05771 198 KKLgferleleeegtpSELIREIKEELEEIEKERESLLEELKELAKKYLEEL----------------LALYEYLEIELE 261
|
.
gi 568987552 261 R 261
Cdd:PRK05771 262 R 262
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
77-304 |
7.86e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 7.86e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 77 NTEDREEEIKQIevykshSKFMKTKIDQLKQELSKKESELLALQTKLETLSnqnsdckqhievLKESLTAKEQRAAILQT 156
Cdd:COG3206 165 NLELRREEARKA------LEFLEEQLPELRKELEEAEAALEEFRQKNGLVD------------LSEEAKLLLQQLSELES 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 157 EVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRdmkdmlevkerkINVLQKKIENLQEQLRDKDKQLTNLKDRVK 236
Cdd:COG3206 227 QLAEARAELAEAEARLAALRAQLGSGPDALPELLQSPV------------IQQLRAQLAELEAELAELSARYTPNHPDVI 294
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568987552 237 SLQtdssntdtalATLEEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKV---NALQAELTE 304
Cdd:COG3206 295 ALR----------AQIAALRAQLQQEAQRILASLEAELEALQAREASLQAQLAQLEARLaelPELEAELRR 355
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
47-472 |
1.01e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 42.37 E-value: 1.01e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 47 EMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQievYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETL 126
Cdd:COG5022 842 LKAEVLIQKFGRSLKAKKRFSLLKKETIYLQSAQRVELAER---QLQELKIDVKSISSLKLVNLELESEIIELKKSLSSD 918
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 127 SNQNSDCKQ----HIEVLKESLTAKEQRaAILQTEVDALrLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEV 202
Cdd:COG5022 919 LIENLEFKTeliaRLKKLLNNIDLEEGP-SIEYVKLPEL-NKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKN 996
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 203 KERKINVLQKKIENLQEQLrdkdKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERLKEQRE----------- 271
Cdd:COG5022 997 FKKELAELSKQYGALQEST----KQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLENNQlqarykalklr 1072
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 272 RDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLID--LKEHASSLASAGLKRDSK--LKSLEIAIEQKKEECNKL 347
Cdd:COG5022 1073 RENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPAnvLQFIVAQMIKLNLLQEISkfLSQLVNTLEPVFQKLSVL 1152
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 348 EAQLKKAHNIEDDSRM--NPEFADRLKQLDKEASYYrDECGKAqaevdrLLEILKEVENEKNDKDKKIAElESLTLRHMK 425
Cdd:COG5022 1153 QLELDGLFWEANLEALpsPPPFAALSEKRLYQSALY-DEKSKL------SSSEVNDLKNELIALFSKIFS-GWPRGDKLK 1224
|
410 420 430 440
....*....|....*....|....*....|....*....|....*...
gi 568987552 426 DQNKKVANLK-YNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELM 472
Cdd:COG5022 1225 KLISEGWVPTeYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLL 1272
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
337-561 |
1.04e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 41.74 E-value: 1.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 337 IEQKKEECNKLEAQLKKAhnieddsrmnpefADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAEL 416
Cdd:COG3883 18 IQAKQKELSELQAELEAA-------------QAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEER 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 417 ESLTLRHMKDQNKKVANLKYNQQLEKKKN-------AQLLEEVRRREDSMVDnsqhlQIEELMNALEKTRQELDATKARL 489
Cdd:COG3883 85 REELGERARALYRSGGSVSYLDVLLGSESfsdfldrLSALSKIADADADLLE-----ELKADKAELEAKKAELEAKLAEL 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568987552 490 ASTQQSLAEKEAHLANLRIERRKQLEEiLEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKD 561
Cdd:COG3883 160 EALKAELEAAKAELEAQQAEQEALLAQ-LSAEEAAAEAQLAELEAELAAAEAAAAAAAAAAAAAAAAAAAAA 230
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
195-570 |
1.29e-03 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 41.97 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 195 DMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLqtdssntdtalatleealsekeriierlkEQRERDD 274
Cdd:PRK03918 169 EVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEI-----------------------------SSELPEL 219
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 275 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEhasslasaglkrdsKLKSLEIAIEQKKEECNKLEAQLKKA 354
Cdd:PRK03918 220 REELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE--------------KIRELEERIEELKKEIEELEEKVKEL 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 355 HNIEddsrmnpEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELESLTLRHMKDQNKKVANL 434
Cdd:PRK03918 286 KELK-------EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELE 358
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 435 KYNQQLEKKKNAQL-LEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQ 513
Cdd:PRK03918 359 ERHELYEEAKAKKEeLERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKC 438
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 514 L---EEILEMKQEALLAAISEKDANIallelsASKKKKTQEEVMALKREKDRLVHQLKQQ 570
Cdd:PRK03918 439 PvcgRELTEEHRKELLEEYTAELKRI------EKELKEIEEKERKLRKELRELEKVLKKE 492
|
|
| PRK05771 |
PRK05771 |
V-type ATP synthase subunit I; Validated |
257-532 |
1.41e-03 |
|
V-type ATP synthase subunit I; Validated
Pssm-ID: 235600 [Multi-domain] Cd Length: 646 Bit Score: 41.84 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 257 SEKERIIERLKEQ-----RERDDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIDLKEHAS--SLASAGLKRDSK 329
Cdd:PRK05771 16 SYKDEVLEALHELgvvhiEDLKEELSNERLRKLRSLLTKLSEALDKLRSYL-PKLNPLREEKKKVSvkSLEELIKDVEEE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 330 LKSLEIAIEQKKEECNKLEAQLKK-AHNIEDdsrmnpefADRLKQLDKEASYYRDEC------GKAQAEVDRLLEILKEV 402
Cdd:PRK05771 95 LEKIEKEIKELEEEISELENEIKElEQEIER--------LEPWGNFDLDLSLLLGFKyvsvfvGTVPEDKLEELKLESDV 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 403 ENEKNDKDKKiaelesltlrhmkdqNKKVANLKYnqqleKKKNAQLLEEVRRREDsmVDNSQHLQIEELMNALEKTRQEL 482
Cdd:PRK05771 167 ENVEYISTDK---------------GYVYVVVVV-----LKELSDEVEEELKKLG--FERLELEEEGTPSELIREIKEEL 224
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 568987552 483 DATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEmKQEALL-AAISEK 532
Cdd:PRK05771 225 EEIEKERESLLEELKELAKKYLEELLALYEYLEIELE-RAEALSkFLKTDK 274
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
54-269 |
1.71e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 41.64 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 54 ASLERNIRDLEDEVQMLKangvLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQE----LSKKESELLALQTKLETLSNQ 129
Cdd:pfam15921 593 AQLEKEINDRRLELQEFK----ILKDKKDAKIRELEARVSDLELEKVKLVNAGSErlraVKDIKQERDQLLNEVKTSRNE 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 130 NSDCKQHIEVLKESLTAKEQRaaiLQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINV 209
Cdd:pfam15921 669 LNSLSEDYEVLKRNFRNKSEE---METTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDA 745
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568987552 210 LQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDT---ALATLEEALSEKERiieRLKEQ 269
Cdd:pfam15921 746 LQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATeknKMAGELEVLRSQER---RLKEK 805
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
253-378 |
1.80e-03 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 41.38 E-value: 1.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 253 EEALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGL-------- 324
Cdd:COG2433 387 EKELPEEEPEAEREKEHEERELTEEEEEIRRLEEQVERLEAEVEELEAELEEKDERIERLERELSEARSEERreirkdre 466
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568987552 325 --KRDSKLKSLEIAIEQKKEECNKLE---AQLKKAHNIEDDSRMNPefADRLKQLDKEA 378
Cdd:COG2433 467 isRLDREIERLERELEEERERIEELKrklERLKELWKLEHSGELVP--VKVVEKFTKEA 523
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
246-352 |
2.03e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 41.22 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 246 DTALA-------TLEEALSEKERIIERLKEQRER----DDRERLEEIESFRKENKDLKEKVNALQAELtEKESSLIdlkE 314
Cdd:COG0542 396 DEAAArvrmeidSKPEELDELERRLEQLEIEKEAlkkeQDEASFERLAELRDELAELEEELEALKARW-EAEKELI---E 471
|
90 100 110
....*....|....*....|....*....|....*...
gi 568987552 315 HASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLK 352
Cdd:COG0542 472 EIQELKEELEQRYGKIPELEKELAELEEELAELAPLLR 509
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
56-266 |
2.61e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 40.65 E-value: 2.61e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 56 LERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQ 135
Cdd:pfam07888 36 LEECLQERAELLQAQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSASSEELSE 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 136 HIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIE 215
Cdd:pfam07888 116 EKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQTEEELRSLSKEFQ 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568987552 216 NLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKERIIERL 266
Cdd:pfam07888 196 ELRNSLAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEELRSLQERL 246
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
56-522 |
2.69e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 41.04 E-value: 2.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 56 LERNIRDLEDEVQM--LKANGVLNTEDREEEIKQIEVYKSHSKF-----MKTKIDQLKQELSKKESELLALQTKLETLSN 128
Cdd:PRK01156 254 YESEIKTAESDLSMelEKNNYYKELEERHMKIINDPVYKNRNYIndyfkYKNDIENKKQILSNIDAEINKYHAIIKKLSV 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 129 QNSDCKQHIEVLKEsltakeqraailQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKD----MLEVKE 204
Cdd:PRK01156 334 LQKDYNDYIKKKSR------------YDDLNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAfiseILKIQE 401
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 205 RKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEE-----------ALSEKERIIERLKEQRER- 272
Cdd:PRK01156 402 IDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGqsvcpvcgttlGEEKSNHIINHYNEKKSRl 481
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 273 --DDRERLEEIESFRKENKDLK--------EKVNALQAE---LTEKESSLIDLKEHASSLASAGLKR---DSKLKSLEIA 336
Cdd:PRK01156 482 eeKIREIEIEVKDIDEKIVDLKkrkeylesEEINKSINEynkIESARADLEDIKIKINELKDKHDKYeeiKNRYKSLKLE 561
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 337 I-EQKKEECNKLEAQLKKAhNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLeilKEVENEKNDKDKKIAE 415
Cdd:PRK01156 562 DlDSKRTSWLNALAVISLI-DIETNRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSI---REIENEANNLNNKYNE 637
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 416 LESLTlRHMKDQNKKVANLKynqqlekkknAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLASTQQS 495
Cdd:PRK01156 638 IQENK-ILIEKLRGKIDNYK----------KQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEI 706
|
490 500
....*....|....*....|....*..
gi 568987552 496 LAEKEAHLANLRIERRKQLEEILEMKQ 522
Cdd:PRK01156 707 LRTRINELSDRINDINETLESMKKIKK 733
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
369-574 |
3.55e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 3.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 369 DRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELEsltlrhmKDQNKKVANLKYNQQLEKKKNAQL 448
Cdd:COG3883 16 PQIQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQ-------AEIDKLQAEIAEAEAEIEERREEL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 449 LEEVRR--REDSMVDNSQHL----QIEELMNALEKTRQELDATKA---RLASTQQSLAEKEAHLANLRIERRKQLEEiLE 519
Cdd:COG3883 89 GERARAlyRSGGSVSYLDVLlgseSFSDFLDRLSALSKIADADADlleELKADKAELEAKKAELEAKLAELEALKAE-LE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 568987552 520 MKQEALLAAISEKDANIALLElsaSKKKKTQEEVMALKREKDRLVHQLKQQTQNR 574
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLS---AEEAAAEAQLAELEAELAAAEAAAAAAAAAA 219
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
172-570 |
3.63e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 40.67 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 172 LNKKTKQlQDLTEEKGTLAGEIRDMKDMLEVKER---KINVLQKKIENLQEQLRDKDKQLTNLKDRVKSlQTDSSNTDTA 248
Cdd:PRK11281 45 LDALNKQ-KLLEAEDKLVQQDLEQTLALLDKIDRqkeETEQLKQQLAQAPAKLRQAQAELEALKDDNDE-ETRETLSTLS 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 249 LATLEEALSEkeriieRLKEQRErddrerleeiesfrkenkdlkekvnaLQAELTEKESSLIDLK---EHASSLASAGLK 325
Cdd:PRK11281 123 LRQLESRLAQ------TLDQLQN--------------------------AQNDLAEYNSQLVSLQtqpERAQAALYANSQ 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 326 R----DSKLKSLEIAIEQ-KKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEAsyyRDECGKAQAEVDRLLEILK 400
Cdd:PRK11281 171 RlqqiRNLLKGGKVGGKAlRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQ---RDYLTARIQRLEHQLQLLQ 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 401 EVENEKNDK--DKKIAELESLTLRHMKDQNKKVAN-LKYNQQLEKKknaqLLEEVRR---------REDSMVDNSQHLQ- 467
Cdd:PRK11281 248 EAINSKRLTlsEKTVQEAQSQDEAARIQANPLVAQeLEINLQLSQR----LLKATEKlntltqqnlRVKNWLDRLTQSEr 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 468 -IEELMNALE----------KTRQEL--DATKARLAS------------TQQ--SLAEKEAHLANLR--------IERRK 512
Cdd:PRK11281 324 nIKEQISVLKgslllsrilyQQQQALpsADLIEGLADriadlrleqfeiNQQrdALFQPDAYIDKLEaghksevtDEVRD 403
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568987552 513 QLEEILEMKQEALLAAISEKDANIAL---LELsaskkkkTQEEVMALkreKDRLVHQLKQQ 570
Cdd:PRK11281 404 ALLQLLDERRELLDQLNKQLNNQLNLainLQL-------NQQQLLSV---SDSLQSTLTQQ 454
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
19-568 |
5.11e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.03 E-value: 5.11e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 19 QQICSHELHRRSQLQPEPAKTKalQTVIEMKDTKIASLERNIRDLED-EVQMLKANGVLNT------EDREEEIKQIEVY 91
Cdd:TIGR00606 232 QLESSREIVKSYENELDPLKNR--LKEIEHNLSKIMKLDNEIKALKSrKKQMEKDNSELELkmekvfQGTDEQLNDLYHN 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 92 KSHSKFMK-----------TKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKE-----QRAAILQ 155
Cdd:TIGR00606 310 HQRTVREKerelvdcqrelEKLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARDSLIQSLATRLeldgfERGPFSE 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 156 TEVD-ALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDR 234
Cdd:TIGR00606 390 RQIKnFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGS 469
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 235 VKSLQTDSSNTDTALATLeeALSEKERIIERLKEQRERDDRERLEEIESFRKENKDLKEK---------VNALQAELTEK 305
Cdd:TIGR00606 470 SDRILELDQELRKAEREL--SKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLnhhtttrtqMEMLTKDKMDK 547
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 306 ESSLIDLKEHASSLASAGLKRDSKLKSLEIAIEQKKEECNKLEAQLKKAH-NIEDDSRMNPEFADRLKQLDKEASYYRDE 384
Cdd:TIGR00606 548 DEQIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKEINQTRDRLAKLNkELASLEQNKNHINNELESKEEQLSSYEDK 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 385 ----CGKAQAEVDrlLEILKEVENEKNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMV 460
Cdd:TIGR00606 628 lfdvCGSQDEESD--LERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLR 705
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 461 dnSQHLQIEELMNALEKTRQELDATKARLASTQQSLAEKEAHLANLRIERRKQLEEILEMK-----QEALLAAISEKDAN 535
Cdd:TIGR00606 706 --LAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKndieeQETLLGTIMPEEES 783
|
570 580 590
....*....|....*....|....*....|...
gi 568987552 536 IALLELSASKKKKTQEEVMALKREKDRLVHQLK 568
Cdd:TIGR00606 784 AKVCLTDVTIMERFQMELKDVERKIAQQAAKLQ 816
|
|
| PRK12705 |
PRK12705 |
hypothetical protein; Provisional |
406-570 |
5.82e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 237178 [Multi-domain] Cd Length: 508 Bit Score: 39.69 E-value: 5.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 406 KNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEElmnALEKTRQELDAT 485
Cdd:PRK12705 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERLVQKEE---QLDARAEKLDNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 486 KARLASTQQSLAEKEAHLANLRIERRKQLEEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALKREKDRLVH 565
Cdd:PRK12705 104 ENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEEEADLEAERKAQNILA 183
|
....*
gi 568987552 566 QLKQQ 570
Cdd:PRK12705 184 QAMQR 188
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
86-391 |
6.87e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 39.34 E-value: 6.87e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 86 KQIEVYKSHSKFMKTKIDQLKQELSKKESELlALQTKLEtlsnqNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRL 165
Cdd:pfam17380 282 KAVSERQQQEKFEKMEQERLRQEKEEKAREV-ERRRKLE-----EAEKARQAEMDRQAAIYAEQERMAMERERELERIRQ 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 166 EEKEsflnkktKQLQDLTEEKgtLAGEIRDMKDMlevkERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQTDSSNT 245
Cdd:pfam17380 356 EERK-------RELERIRQEE--IAMEISRMREL----ERLQMERQQKNERVRQELEAARKVKILEEERQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 246 DTALATLEEALS------------EKERIieRLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLI--D 311
Cdd:pfam17380 423 EQIRAEQEEARQrevrrleeerarEMERV--RLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRKILekE 500
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 312 LKEHASSLASAGLKRDSKLKSLE-----IAIEQKK---EECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRD 383
Cdd:pfam17380 501 LEERKQAMIEEERKRKLLEKEMEerqkaIYEEERRreaEEERRKQQEMEERRRIQEQMRKATEERSRLEAMEREREMMRQ 580
|
330
....*....|
gi 568987552 384 --ECGKAQAE 391
Cdd:pfam17380 581 ivESEKARAE 590
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
47-577 |
7.39e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.68 E-value: 7.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 47 EMKDTKIASLERNIR------DLEDEVQMLKANGVLNT---------EDREEEIKQIEVYKSHSKFMKTKIDQLKQELSK 111
Cdd:COG5022 924 EFKTELIARLKKLLNnidleeGPSIEYVKLPELNKLHEvesklketsEEYEDLLKKSTILVREGNKANSELKNFKKELAE 1003
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 112 KESELLALQTK---LETLSNQNSDCKQHIEVLKESLTAKEQraailQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGT 188
Cdd:COG5022 1004 LSKQYGALQEStkqLKELPVEVAELQSASKIISSESTELSI-----LKPLQKLKGLLLLENNQLQARYKALKLRRENSLL 1078
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 189 LAGEIRDMKDMlEVKERKINVLQKKI--------ENLQEQLRDKDKQLTNLKDRVKSLQTDSSNTDTALATLEEALSEKE 260
Cdd:COG5022 1079 DDKQLYQLEST-ENLLKTINVKDLEVtnrnlvkpANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELD 1157
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 261 RIIERLKEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLkehaSSLASAGLKRDSKLKSLEiaieqk 340
Cdd:COG5022 1158 GLFWEANLEALPSPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIAL----FSKIFSGWPRGDKLKKLI------ 1227
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 341 keecnkleaqlKKAHNIEDDSRMNPEFADRLKQLDKEASYyrdecgkaqaEVDRLLEILKEVENeKNDKDKKIAELESLT 420
Cdd:COG5022 1228 -----------SEGWVPTEYSTSLKGFNNLNKKFDTPASM----------SNEKLLSLLNSIDN-LLSSYKLEEEVLPAT 1285
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 421 LRHMKDQNK---------KVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNSQHLQIEELMNALEKTRQELDATKARLaS 491
Cdd:COG5022 1286 INSLLQYINvglfnalrtKASSLRWKSATEVNYNSEELDDWCREFEISDVDEELEELIQAVKVLQLLKDDLNKLDELL-D 1364
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 492 TQQSLaeKEAHLANLrIERRKQLEEILEMKQEALLAAisEKDANIALLELSASKKKKTQEEVMALKREKDRLVHQLKQQT 571
Cdd:COG5022 1365 ACYSL--NPAEIQNL-KSRYDPADKENNLPKEILKKI--EALLIKQELQLSLEGKDETEVHLSEIFSEEKSLISLDRNSI 1439
|
....*.
gi 568987552 572 QNRMKL 577
Cdd:COG5022 1440 YKEEVL 1445
|
|
| ClyA_Cry6Aa-like |
cd22656 |
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes ... |
82-258 |
7.89e-03 |
|
Bacillus thuringiensis crystal 6Aa (Cry6Aa) toxin, and similar proteins; This model includes pesticidal Cry6Aa toxin from Bacillus thuringiensis, one of the many parasporal crystal (Cry) toxins produced during the sporulation phase of growth. Many of these proteins are toxic to numerous insect species and have been effectively used as proteinaceous insecticides to directly kill insect pests; some have been used to control insect growth on transgenic agricultural plants. Cry6Aa exists as a protoxin, which is activated by cleavage using trypsin. Structure studies for Cry6Aa support a mechanism of action by pore formation, similar to cytolysin A (ClyA)-type alpha pore-forming toxins (alpha-PFTs) such as HblB, and bioassay and mutation studies show that Cry6Aa is an active pore-forming toxin. Cry6Aa shows atypical features compared to other members of alpha-PFTs, including internal repeat sequences and small loop regions within major alpha helices.
Pssm-ID: 439154 [Multi-domain] Cd Length: 309 Bit Score: 38.89 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 82 EEEIKQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQTKLETLSNQNSD--CKQHIEVLKESLTAKEQRAAIlqtevd 159
Cdd:cd22656 124 DDLLKEAKKYQDKAAKVVDKLTDFENQTEKDQTALETLEKALKDLLTDEGGaiARKEIKDLQKELEKLNEEYAA------ 197
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 160 ALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLEVKERKINVLQKkienLQEQLRDKDKQLTNLKDRVKSLQ 239
Cdd:cd22656 198 KLKAKIDELKALIADDEAKLAAALRLIADLTAADTDLDNLLALIGPAIPALEK----LQGAWQAIATDLDSLKDLLEDDI 273
|
170
....*....|....*....
gi 568987552 240 TDSSNTDTALATLEEALSE 258
Cdd:cd22656 274 SKIPAAILAKLELEKAIEK 292
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
39-535 |
7.89e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 39.64 E-value: 7.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 39 TKALQTVIEMKDTKIASLERNIRDLEDEVQMLKANGVLNTEDREEEIKQIEVYKSH------SKFMKTKIDQLKQELSKK 112
Cdd:TIGR00606 572 KKQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKlfdvcgSQDEESDLERLKEEIEKS 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 113 ESELLALQTK-------LETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEE 185
Cdd:TIGR00606 652 SKQRAMLAGAtavysqfITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGL 731
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 186 KGTLAGEIRDMKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKDRVKSLQtDSSNTDTALATLEEALSEKERIIER 265
Cdd:TIGR00606 732 APGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAK-VCLTDVTIMERFQMELKDVERKIAQ 810
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 266 L-------------------KEQRERDDRERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHAS---SLASAG 323
Cdd:TIGR00606 811 QaaklqgsdldrtvqqvnqeKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQrrqQFEEQL 890
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 324 LKRDSKLKSLEIAIEQKKEECNKLEAQLKK---------AHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDR 394
Cdd:TIGR00606 891 VELSTEVQSLIREIKDAKEQDSPLETFLEKdqqekeeliSSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDD 970
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 395 LLeilKEVENEKNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQL--------LEEVRRREDSMVDNSQHL 466
Cdd:TIGR00606 971 YL---KQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLtlrkreneLKEVEEELKQHLKEMGQM 1047
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568987552 467 QIEELMNALEKTRQELDATKAR--LASTQQSLAEKEAHLANLRIeRRKQLEEILEMKQEALLAAISEKDAN 535
Cdd:TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNhvLALGRQKGYEKEIKHFKKEL-REPQFRDAEEKYREMMIVMRTTELVN 1117
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
53-533 |
9.94e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 39.11 E-value: 9.94e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 53 IASLERNIRDLEDEVQMLKANgVLNTEDREEEI-----------KQIEVYKSHSKFMKTKIDQLKQELSKKESELLALQT 121
Cdd:PRK01156 161 INSLERNYDKLKDVIDMLRAE-ISNIDYLEEKLkssnlelenikKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKS 239
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 122 KLETLSNQNSDCKQHIEVLKESltakEQRAAILQTEVDALRLRLEEKESFLNKKTKQLQDLTEEKGTLAGEIRDMKDMLE 201
Cdd:PRK01156 240 ALNELSSLEDMKNRYESEIKTA----ESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDIENKKQILS 315
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 202 VKERKINVLQ---KKIENLQ---EQLRDKDKQLTNLKDRVKSLQTDSSNTDTALatleealsekeRIIERLKEQRERDDR 275
Cdd:PRK01156 316 NIDAEINKYHaiiKKLSVLQkdyNDYIKKKSRYDDLNNQILELEGYEMDYNSYL-----------KSIESLKKKIEEYSK 384
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 276 ERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLasaglkrDSKLKSLEIAIEQKKEECNKLEAQLK--- 352
Cdd:PRK01156 385 NIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSL-------NQRIRALRENLDELSRNMEMLNGQSVcpv 457
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 353 --KAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEVENEKNDK----DKKIAELESLTLRHMKD 426
Cdd:PRK01156 458 cgTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKsineYNKIESARADLEDIKIK 537
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 427 QNK-KVANLKYNQQLEKKKNAQLLEEVRRRED-----SMVDN-------SQHLQIEELMNALEKTRQELDATKARLAS-T 492
Cdd:PRK01156 538 INElKDKHDKYEEIKNRYKSLKLEDLDSKRTSwlnalAVISLidietnrSRSNEIKKQLNDLESRLQEIEIGFPDDKSyI 617
|
490 500 510 520
....*....|....*....|....*....|....*....|....*.
gi 568987552 493 QQSLAEKEAHLANLR-----IERRKQLEEILEMKQEALLAAISEKD 533
Cdd:PRK01156 618 DKSIREIENEANNLNnkyneIQENKILIEKLRGKIDNYKKQIAEID 663
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
99-577 |
9.99e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 39.18 E-value: 9.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 99 KTKIDQLKQELSKKESELLALQTKLETLSNQNSDCKQHIEVLKESLTAKEQRAAILQTEVDALRLRLEEKESFLNKKTKQ 178
Cdd:TIGR00618 388 KTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQS 467
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 179 LQDLTEEKGTLageirdmKDMLEVKERKINVLQKKIENLQEQLRDKDKQLTNLKdrVKSLQTDSSNTDTAL--------A 250
Cdd:TIGR00618 468 LKEREQQLQTK-------EQIHLQETRKKAVVLARLLELQEEPCPLCGSCIHPN--PARQDIDNPGPLTRRmqrgeqtyA 538
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 251 TLEEALSEKERIIERLKEQRERDDRERLEEIESFRK---ENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAG---- 323
Cdd:TIGR00618 539 QLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIltqCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQhall 618
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 324 LKRDSKLKSLEIAI-EQKKEECNKLEAQLKKAHNIEDDSRMNPEFADRLKQLDKEASYYRDECGKAQAEVDRLLEILKEV 402
Cdd:TIGR00618 619 RKLQPEQDLQDVRLhLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEM 698
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 403 ENEKNDKDKKIAELESLTLRHMKDQNKKVANLKYNQQLEKKKNAQLLEEVRRREDSMVDNS--QHLQIEELMNALEKTRQ 480
Cdd:TIGR00618 699 LAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHQARTVLKARteAHFNNNEEVTAALQTGA 778
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568987552 481 ELDATKARLASTQQSLAEKEAHLANLRIERRKQL---EEILEMKQEALLAAISEKDANIALLELSASKKKKTQEEVMALK 557
Cdd:TIGR00618 779 ELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIpsdEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECS 858
|
490 500
....*....|....*....|
gi 568987552 558 REKDRLVHQLKQQTQNRMKL 577
Cdd:TIGR00618 859 KQLAQLTQEQAKIIQLSDKL 878
|
|
| |
