|
Name |
Accession |
Description |
Interval |
E-value |
| NifS |
COG1104 |
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino ... |
2-356 |
1.35e-122 |
|
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino acid transport and metabolism];
Pssm-ID: 440721 [Multi-domain] Cd Length: 381 Bit Score: 358.21 E-value: 1.35e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 2 IGGKPQDIIFTSGGTESNNLVIHSMVRCFHEqqtlKGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLvENQMAEVTF 81
Cdd:COG1104 58 LGADPEEIIFTSGGTEANNLAIKGAARAYRK----KGK-------------HIITSAIEHPAVLETARFL-EKEGFEVTY 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 82 VPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVDV 161
Cdd:COG1104 120 LPVDE-DGRVDLEALEAALRPDTALVSVMHANNETGTIQPIAEIAEIAKEHG----------VLFHTDAVQAVGKIPVDV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 162 EDLGVDFLTIVGHKFYGPR-IGALYVRgvgKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR 240
Cdd:COG1104 189 KELGVDLLSLSAHKIYGPKgVGALYVR---KGVRLEPLIHGGGQERGLRSGTENVPGIVGLGKAAELAAEELEEEAARLR 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 241 DIRDYLEERLEAEFGKrIHLNSrfPGVERLPNTCNFSIQGsqLQGYTVLAQC--RTLLASVGASCHSNHeDRPSPVLLSC 318
Cdd:COG1104 266 ALRDRLEEGLLAAIPG-VVING--DPENRLPNTLNFSFPG--VEGEALLLALdlAGIAVSSGSACSSGS-LEPSHVLLAM 339
|
330 340 350
....*....|....*....|....*....|....*...
gi 568909395 319 GIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:COG1104 340 GLDEELAHGSIRFSLGRFTTEEEIDRAIEALKEIVARL 377
|
|
| PLN02651 |
PLN02651 |
cysteine desulfurase |
1-343 |
3.12e-101 |
|
cysteine desulfurase
Pssm-ID: 178257 [Multi-domain] Cd Length: 364 Bit Score: 303.11 E-value: 3.12e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGKPQDIIFTSGGTESNNLVIHSMVRCFHEQqtlkgnmvdqhspeegtRPHFITCTVEHDSIRLPLEHLVENQMaEVT 80
Cdd:PLN02651 55 LIGADPKEIIFTSGATESNNLAIKGVMHFYKDK-----------------KKHVITTQTEHKCVLDSCRHLQQEGF-EVT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 81 FVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVD 160
Cdd:PLN02651 117 YLPVKS-DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKK----------VLFHTDAAQAVGKIPVD 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 161 VEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHM 239
Cdd:PLN02651 186 VDDLGVDLMSISGHKIYGPKgVGALYVRR-RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHM 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 240 RDIRDYLEERLEAEFGKrIHLNSRFPGVERLPNTCNFSIQGsqLQGYTVLAQCRTLLASVGASCHSNhEDRPSPVLLSCG 319
Cdd:PLN02651 265 KALRERLLNGLRAKLGG-VRVNGPRDPEKRYPGTLNLSFAY--VEGESLLMGLKEVAVSSGSACTSA-SLEPSYVLRALG 340
|
330 340
....*....|....*....|....
gi 568909395 320 IPVDVARNAVRLSVGRGTTRADVD 343
Cdd:PLN02651 341 VPEEMAHGSLRLGVGRFTTEEEVD 364
|
|
| FeS_nifS |
TIGR03402 |
cysteine desulfurase NifS; Members of this protein family are NifS, one of several related ... |
2-356 |
4.73e-88 |
|
cysteine desulfurase NifS; Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Pssm-ID: 132443 [Multi-domain] Cd Length: 379 Bit Score: 269.87 E-value: 4.73e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 2 IGGKPQDIIFTSGGTESNNLVIHSMVRCFHEqqtlkgnmvdqhspeegtRPHFITCTVEHDSIRLPLEHLvENQMAEVTF 81
Cdd:TIGR03402 55 LGAEPDEIIFTSGGTESDNTAIKSALAAQPE------------------KRHIITTAVEHPAVLSLCQHL-EKQGYKVTY 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 82 VPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVDV 161
Cdd:TIGR03402 116 LPVDE-EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERG----------ALFHTDAVQAVGKIPIDL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 162 EDLGVDFLTIVGHKFYGPR-IGALYVRgvgKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR 240
Cdd:TIGR03402 185 KEMNIDMLSLSGHKLHGPKgVGALYIR---KGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 241 DIRDYLEERLEAEFGKrIHLNSrfPGVERLPNTCNFSIQGsqLQGYTVLaqcrTLL------ASVGASCHSNHEDrPSPV 314
Cdd:TIGR03402 262 ALRDRLEAGLLARIPD-ARLNG--DPTKRLPNTVNISFEY--IEGEAIL----LLLdmegicASSGSACTSGSLE-PSHV 331
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568909395 315 LLSCGIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:TIGR03402 332 LRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373
|
|
| Aminotran_5 |
pfam00266 |
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ... |
1-344 |
9.14e-60 |
|
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Pssm-ID: 425567 [Multi-domain] Cd Length: 368 Bit Score: 196.70 E-value: 9.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGK-PQDIIFTSGGTESNNLVIHSMVRcfheqqtlkgnmvdqhSPEEGTrpHFITCTVEHDSIRLPLEHLVENQMAEV 79
Cdd:pfam00266 55 FINAPsNDEIIFTSGTTEAINLVALSLGR----------------SLKPGD--EIVITEMEHHANLVPWQELAKRTGARV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 80 TFVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRV 159
Cdd:pfam00266 117 RVLPLDE-DGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYG----------ALVLVDAAQAIGHRPI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 160 DVEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGGG--------------QEWNFRPGTENTPMIAGLGKA 224
Cdd:pfam00266 186 DVQKLGVDFLAFSGHKLYGPTgIGVLYGRR-DLLEKMPPLLGGGGmietvslqestfadAPWKFEAGTPNIAGIIGLGAA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 225 ADLVSE-NCETYEAHMRDIRDYLEERLEAEFGKRIHlnsrfpGVERLPNTCNFSIQGsqLQGYTVLaqcrTLLASVGASC 303
Cdd:pfam00266 265 LEYLSEiGLEAIEKHEHELAQYLYERLLSLPGIRLY------GPERRASIISFNFKG--VHPHDVA----TLLDESGIAV 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568909395 304 HSNHedrpspvllSCGIPVDVARN---AVRLSVGRGTTRADVDL 344
Cdd:pfam00266 333 RSGH---------HCAQPLMVRLGlggTVRASFYIYNTQEDVDR 367
|
|
| SufS_like |
cd06453 |
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP) ... |
1-349 |
2.73e-41 |
|
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Pssm-ID: 99746 [Multi-domain] Cd Length: 373 Bit Score: 148.38 E-value: 2.73e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGK-PQDIIFTSGGTESNNLVIHSMVRCFHEqqtlkGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLVENQMAEV 79
Cdd:cd06453 55 FINAPsPDEIIFTRNTTEAINLVAYGLGRANKP-----GD-------------EIVTSVMEHHSNIVPWQQLAERTGAKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 80 TFVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKAlnqiraaSGLPrVLVhtDAAQALGKRRV 159
Cdd:cd06453 117 KVVPVDD-DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHE-------AGVP-VLV--DGAQSAGHMPV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 160 DVEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGG---------GQEWN-----FRPGTENTPMIAGLGKA 224
Cdd:cd06453 186 DVQDLGCDFLAFSGHKMLGPTgIGVLYGKE-ELLEEMPPYGGGGemieevsfeETTYAdlphkFEAGTPNIAGAIGLGAA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 225 ADLV-SENCETYEAHMRDIRDYLEERLEAefgkrihlnsrFPGVERLPNTCN------FSIQGsqLQGYTVlaqcRTLLA 297
Cdd:cd06453 265 IDYLeKIGMEAIAAHEHELTAYALERLSE-----------IPGVRVYGDAEDragvvsFNLEG--IHPHDV----ATILD 327
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568909395 298 SVGASCHSNHEdrpspvllsCGIPVDVARN---AVRLSVGRGTTRADVDLIVQDL 349
Cdd:cd06453 328 QYGIAVRAGHH---------CAQPLMRRLGvpgTVRASFGLYNTEEEIDALVEAL 373
|
|
| f2_encap_cargo1 |
NF041166 |
family 2A encapsulin nanocompartment cargo protein cysteine desulfurase; Capsid-like ... |
102-236 |
6.67e-08 |
|
family 2A encapsulin nanocompartment cargo protein cysteine desulfurase; Capsid-like encapsulin nanocompartments are commonly found in bacteria and archaea. Encapsulin nanocompartments, which are assembled from shell proteins, encapsulate various cargo proteins, typically peroxidases or ferritin-like proteins, to protect cells from oxidative stress caused by peroxide. Proteins of this family are cysteine desulfurases with an additional N-terminal encapsulation targeting sequence (~200 aa) that is necessary and sufficient for compartmentalization.
Pssm-ID: 469077 [Multi-domain] Cd Length: 623 Bit Score: 54.09 E-value: 6.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 102 PTTCLVTIMLANNETGVIMPVSEI---SRRIKAlnqiraasglpRVLVhtDAAQALGKRRVDVEDLGVDFLTIVGHKFYG 178
Cdd:NF041166 385 PRTKLVSVTQVSNALGTVTPVKEIialAHRAGA-----------KVLV--DGAQSVSHMPVDVQALDADFFVFSGHKVFG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 179 PR-IGALYvrgvGKL-----TPLYPmlfGGGqewN------------------FRPGTENtpmIA---GLGKAADLVS-- 229
Cdd:NF041166 452 PTgIGVVY----GKRdlleaMPPWQ---GGG---NmiadvtfektvyqpapnrFEAGTGN---IAdavGLGAALDYVEri 518
|
....*....
gi 568909395 230 --ENCETYE 236
Cdd:NF041166 519 giENIARYE 527
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| NifS |
COG1104 |
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino ... |
2-356 |
1.35e-122 |
|
Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family [Amino acid transport and metabolism];
Pssm-ID: 440721 [Multi-domain] Cd Length: 381 Bit Score: 358.21 E-value: 1.35e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 2 IGGKPQDIIFTSGGTESNNLVIHSMVRCFHEqqtlKGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLvENQMAEVTF 81
Cdd:COG1104 58 LGADPEEIIFTSGGTEANNLAIKGAARAYRK----KGK-------------HIITSAIEHPAVLETARFL-EKEGFEVTY 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 82 VPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVDV 161
Cdd:COG1104 120 LPVDE-DGRVDLEALEAALRPDTALVSVMHANNETGTIQPIAEIAEIAKEHG----------VLFHTDAVQAVGKIPVDV 188
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 162 EDLGVDFLTIVGHKFYGPR-IGALYVRgvgKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR 240
Cdd:COG1104 189 KELGVDLLSLSAHKIYGPKgVGALYVR---KGVRLEPLIHGGGQERGLRSGTENVPGIVGLGKAAELAAEELEEEAARLR 265
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 241 DIRDYLEERLEAEFGKrIHLNSrfPGVERLPNTCNFSIQGsqLQGYTVLAQC--RTLLASVGASCHSNHeDRPSPVLLSC 318
Cdd:COG1104 266 ALRDRLEEGLLAAIPG-VVING--DPENRLPNTLNFSFPG--VEGEALLLALdlAGIAVSSGSACSSGS-LEPSHVLLAM 339
|
330 340 350
....*....|....*....|....*....|....*...
gi 568909395 319 GIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:COG1104 340 GLDEELAHGSIRFSLGRFTTEEEIDRAIEALKEIVARL 377
|
|
| PLN02651 |
PLN02651 |
cysteine desulfurase |
1-343 |
3.12e-101 |
|
cysteine desulfurase
Pssm-ID: 178257 [Multi-domain] Cd Length: 364 Bit Score: 303.11 E-value: 3.12e-101
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGKPQDIIFTSGGTESNNLVIHSMVRCFHEQqtlkgnmvdqhspeegtRPHFITCTVEHDSIRLPLEHLVENQMaEVT 80
Cdd:PLN02651 55 LIGADPKEIIFTSGATESNNLAIKGVMHFYKDK-----------------KKHVITTQTEHKCVLDSCRHLQQEGF-EVT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 81 FVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVD 160
Cdd:PLN02651 117 YLPVKS-DGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKK----------VLFHTDAAQAVGKIPVD 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 161 VEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHM 239
Cdd:PLN02651 186 VDDLGVDLMSISGHKIYGPKgVGALYVRR-RPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACELAMKEMDYDEKHM 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 240 RDIRDYLEERLEAEFGKrIHLNSRFPGVERLPNTCNFSIQGsqLQGYTVLAQCRTLLASVGASCHSNhEDRPSPVLLSCG 319
Cdd:PLN02651 265 KALRERLLNGLRAKLGG-VRVNGPRDPEKRYPGTLNLSFAY--VEGESLLMGLKEVAVSSGSACTSA-SLEPSYVLRALG 340
|
330 340
....*....|....*....|....
gi 568909395 320 IPVDVARNAVRLSVGRGTTRADVD 343
Cdd:PLN02651 341 VPEEMAHGSLRLGVGRFTTEEEVD 364
|
|
| FeS_nifS |
TIGR03402 |
cysteine desulfurase NifS; Members of this protein family are NifS, one of several related ... |
2-356 |
4.73e-88 |
|
cysteine desulfurase NifS; Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Pssm-ID: 132443 [Multi-domain] Cd Length: 379 Bit Score: 269.87 E-value: 4.73e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 2 IGGKPQDIIFTSGGTESNNLVIHSMVRCFHEqqtlkgnmvdqhspeegtRPHFITCTVEHDSIRLPLEHLvENQMAEVTF 81
Cdd:TIGR03402 55 LGAEPDEIIFTSGGTESDNTAIKSALAAQPE------------------KRHIITTAVEHPAVLSLCQHL-EKQGYKVTY 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 82 VPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVDV 161
Cdd:TIGR03402 116 LPVDE-EGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERG----------ALFHTDAVQAVGKIPIDL 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 162 EDLGVDFLTIVGHKFYGPR-IGALYVRgvgKLTPLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHMR 240
Cdd:TIGR03402 185 KEMNIDMLSLSGHKLHGPKgVGALYIR---KGTRFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLEEENTRVR 261
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 241 DIRDYLEERLEAEFGKrIHLNSrfPGVERLPNTCNFSIQGsqLQGYTVLaqcrTLL------ASVGASCHSNHEDrPSPV 314
Cdd:TIGR03402 262 ALRDRLEAGLLARIPD-ARLNG--DPTKRLPNTVNISFEY--IEGEAIL----LLLdmegicASSGSACTSGSLE-PSHV 331
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 568909395 315 LLSCGIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:TIGR03402 332 LRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARL 373
|
|
| PRK02948 |
PRK02948 |
IscS subfamily cysteine desulfurase; |
1-358 |
1.17e-65 |
|
IscS subfamily cysteine desulfurase;
Pssm-ID: 179511 [Multi-domain] Cd Length: 381 Bit Score: 212.28 E-value: 1.17e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGKPQDIIFTSGGTESNNLVIHSMvrcfheqqtLKGNmvdqhsPEEGTrpHFITCTVEHDSIRLPLEHLvENQMAEVT 80
Cdd:PRK02948 55 MIGGEEQGIYFTSGGTESNYLAIQSL---------LNAL------PQNKK--HIITTPMEHASIHSYFQSL-ESQGYTVT 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 81 FVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVD 160
Cdd:PRK02948 117 EIPVDK-SGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYN----------VLFHSDCVQTFGKLPID 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 161 VEDLGVDFLTIVGHKFYGPR-IGALYVRGVGKLTPLYPmlfGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHM 239
Cdd:PRK02948 186 VFEMGIDSLSVSAHKIYGPKgVGAVYINPQVRWKPVFP---GTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQEESLRF 262
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 240 RDIRDYLEERLEAefgKRIHLNSRFPGVERLPNTCNFSIQGSQLQgYTVLAQCRTLLA-SVGASCHSNHEDrPSPVLLSC 318
Cdd:PRK02948 263 KELRSYFLEQIQT---LPLPIEVEGHSTSCLPHIIGVTIKGIEGQ-YTMLECNRRGIAiSTGSACQVGKQE-PSKTMLAI 337
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 568909395 319 GIPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQLEG 358
Cdd:PRK02948 338 GKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQFYR 377
|
|
| PRK14012 |
PRK14012 |
IscS subfamily cysteine desulfurase; |
1-356 |
2.15e-64 |
|
IscS subfamily cysteine desulfurase;
Pssm-ID: 184450 [Multi-domain] Cd Length: 404 Bit Score: 209.80 E-value: 2.15e-64
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGKPQDIIFTSGGTESNNLVIHSMVRCFHEqqtlKGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLvENQMAEVT 80
Cdd:PRK14012 61 LIGADPREIVFTSGATESDNLAIKGAAHFYQK----KGK-------------HIITSKTEHKAVLDTCRQL-EREGFEVT 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 81 FVPVsKVNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVD 160
Cdd:PRK14012 123 YLDP-QSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERG----------IIFHVDAAQSVGKVPID 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 161 VEDLGVDFLTIVGHKFYGPR-IGALYVRGVGKLTpLYPMLFGGGQEWNFRPGTENTPMIAGLGKAADLVSENCETYEAHM 239
Cdd:PRK14012 192 LSKLKVDLMSFSAHKIYGPKgIGALYVRRKPRVR-LEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEMATENERI 270
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 240 RDIRDYLEERLEAEfgKRIHLNSRFPgvERLPNTCNFSIQGsqLQGYTVLAQCRTLLASVGASCHSNHEDrPSPVLLSCG 319
Cdd:PRK14012 271 RALRDRLWNGIKDI--EEVYLNGDLE--QRVPGNLNVSFNY--VEGESLIMALKDLAVSSGSACTSASLE-PSYVLRALG 343
|
330 340 350
....*....|....*....|....*....|....*..
gi 568909395 320 IPVDVARNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:PRK14012 344 LNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKL 380
|
|
| Aminotran_5 |
pfam00266 |
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ... |
1-344 |
9.14e-60 |
|
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.
Pssm-ID: 425567 [Multi-domain] Cd Length: 368 Bit Score: 196.70 E-value: 9.14e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGK-PQDIIFTSGGTESNNLVIHSMVRcfheqqtlkgnmvdqhSPEEGTrpHFITCTVEHDSIRLPLEHLVENQMAEV 79
Cdd:pfam00266 55 FINAPsNDEIIFTSGTTEAINLVALSLGR----------------SLKPGD--EIVITEMEHHANLVPWQELAKRTGARV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 80 TFVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRV 159
Cdd:pfam00266 117 RVLPLDE-DGLLDLDELEKLITPKTKLVAITHVSNVTGTIQPVPEIGKLAHQYG----------ALVLVDAAQAIGHRPI 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 160 DVEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGGG--------------QEWNFRPGTENTPMIAGLGKA 224
Cdd:pfam00266 186 DVQKLGVDFLAFSGHKLYGPTgIGVLYGRR-DLLEKMPPLLGGGGmietvslqestfadAPWKFEAGTPNIAGIIGLGAA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 225 ADLVSE-NCETYEAHMRDIRDYLEERLEAEFGKRIHlnsrfpGVERLPNTCNFSIQGsqLQGYTVLaqcrTLLASVGASC 303
Cdd:pfam00266 265 LEYLSEiGLEAIEKHEHELAQYLYERLLSLPGIRLY------GPERRASIISFNFKG--VHPHDVA----TLLDESGIAV 332
|
330 340 350 360
....*....|....*....|....*....|....*....|....
gi 568909395 304 HSNHedrpspvllSCGIPVDVARN---AVRLSVGRGTTRADVDL 344
Cdd:pfam00266 333 RSGH---------HCAQPLMVRLGlggTVRASFYIYNTQEDVDR 367
|
|
| CsdA |
COG0520 |
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism]; |
4-354 |
1.33e-42 |
|
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];
Pssm-ID: 440286 [Multi-domain] Cd Length: 396 Bit Score: 152.60 E-value: 1.33e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 4 GKPQDIIFTSGGTESNNLVIHSMVRcfheqqtLKgnmvdqhspeEGTrpHFITCTVEHDSIRLPLEHLVENQMAEVTFVP 83
Cdd:COG0520 75 ASPDEIIFTRGTTEAINLVAYGLGR-------LK----------PGD--EILITEMEHHSNIVPWQELAERTGAEVRVIP 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 84 VSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNqiraasglprVLVHTDAAQALGKRRVDVED 163
Cdd:COG0520 136 LDE-DGELDLEALEALLTPRTKLVAVTHVSNVTGTVNPVKEIAALAHAHG----------ALVLVDGAQSVPHLPVDVQA 204
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 164 LGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGGG-------QEWNFRP-------GTENTPMIAGLGKAADLV 228
Cdd:COG0520 205 LGCDFYAFSGHKLYGPTgIGVLYGKR-ELLEALPPFLGGGGmiewvsfDGTTYADlprrfeaGTPNIAGAIGLGAAIDYL 283
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 229 SE-NCETYEAHMRDIRDYLEERLEAEFGkrIHLNSRFPGVERLPnTCNFSIQGsqLQGYTVlaqcRTLLASVG----ASC 303
Cdd:COG0520 284 EAiGMEAIEARERELTAYALEGLAAIPG--VRILGPADPEDRSG-IVSFNVDG--VHPHDV----AALLDDEGiavrAGH 354
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 568909395 304 HSNHedrpsPVLLSCGIPvdvarNAVRLSVGRGTTRADVDLIVQDLKQAVA 354
Cdd:COG0520 355 HCAQ-----PLMRRLGVP-----GTVRASFHLYNTEEEIDRLVEALKKLAE 395
|
|
| SufS_like |
cd06453 |
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP) ... |
1-349 |
2.73e-41 |
|
Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Pssm-ID: 99746 [Multi-domain] Cd Length: 373 Bit Score: 148.38 E-value: 2.73e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGK-PQDIIFTSGGTESNNLVIHSMVRCFHEqqtlkGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLVENQMAEV 79
Cdd:cd06453 55 FINAPsPDEIIFTRNTTEAINLVAYGLGRANKP-----GD-------------EIVTSVMEHHSNIVPWQQLAERTGAKL 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 80 TFVPVSKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKAlnqiraaSGLPrVLVhtDAAQALGKRRV 159
Cdd:cd06453 117 KVVPVDD-DGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHE-------AGVP-VLV--DGAQSAGHMPV 185
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 160 DVEDLGVDFLTIVGHKFYGPR-IGALYVRGvGKLTPLYPMLFGG---------GQEWN-----FRPGTENTPMIAGLGKA 224
Cdd:cd06453 186 DVQDLGCDFLAFSGHKMLGPTgIGVLYGKE-ELLEEMPPYGGGGemieevsfeETTYAdlphkFEAGTPNIAGAIGLGAA 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 225 ADLV-SENCETYEAHMRDIRDYLEERLEAefgkrihlnsrFPGVERLPNTCN------FSIQGsqLQGYTVlaqcRTLLA 297
Cdd:cd06453 265 IDYLeKIGMEAIAAHEHELTAYALERLSE-----------IPGVRVYGDAEDragvvsFNLEG--IHPHDV----ATILD 327
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568909395 298 SVGASCHSNHEdrpspvllsCGIPVDVARN---AVRLSVGRGTTRADVDLIVQDL 349
Cdd:cd06453 328 QYGIAVRAGHH---------CAQPLMRRLGvpgTVRASFGLYNTEEEIDALVEAL 373
|
|
| sufS |
TIGR01979 |
cysteine desulfurases, SufSfamily; This model represents a subfamily of NifS-related cysteine ... |
6-350 |
1.92e-28 |
|
cysteine desulfurases, SufSfamily; This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]
Pssm-ID: 131034 [Multi-domain] Cd Length: 403 Bit Score: 114.29 E-value: 1.92e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 6 PQDIIFTSGGTESNNLVIHSMVRCFHEqqtlKGNMVdqhspeegtrphfITCTVEHDSIRLPLEHLVENQMAEVTFVPVS 85
Cdd:TIGR01979 80 DEEIVFTRGTTESINLVAYSWGDSNLK----AGDEI-------------VISEMEHHANIVPWQLLAERTGATLKFIPLD 142
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 86 KvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNQIraasglprVLVhtDAAQALGKRRVDVEDLG 165
Cdd:TIGR01979 143 D-DGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAK--------VLV--DGAQAVPHMPVDVQALD 211
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 166 VDFLTIVGHKFYGPR-IGALYvrgvGK---LTPLYPMLFGGG-------QE-------WNFRPGTENTPMIAGLGKAADL 227
Cdd:TIGR01979 212 CDFYVFSGHKMYGPTgIGVLY----GKeelLEQMPPFLGGGEmiaevsfEEttyneapHKFEAGTPNIAGVIGLGAAIDY 287
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 228 VSE-NCETYEAHMRDIRDYLEERLEAEFGKRIHlnSRFPGVERLpNTCNFSIQGsqLQGYTVlaqcRTLLASVGASCHSN 306
Cdd:TIGR01979 288 LEAiGLENIEAHEHELTAYALERLGEIPGLRIY--GPRDAEDRG-GIISFNVEG--VHPHDV----GTILDEEGIAVRSG 358
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568909395 307 HEdrpspvllsCGIPV----DVARNAvRLSVGRGTTRADVDLIVQDLK 350
Cdd:TIGR01979 359 HH---------CAQPLmrrfGVPATC-RASFYIYNTEEDIDALVEALK 396
|
|
| PLN02855 |
PLN02855 |
Bifunctional selenocysteine lyase/cysteine desulfurase |
6-354 |
2.79e-20 |
|
Bifunctional selenocysteine lyase/cysteine desulfurase
Pssm-ID: 215460 [Multi-domain] Cd Length: 424 Bit Score: 91.35 E-value: 2.79e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 6 PQDIIFTSGGTESNNLVIHSMVRcfheqQTLK-GNMVdqhspeegtrphfITCTVEHDSIRLPLEHLVENQMAEVTFVPV 84
Cdd:PLN02855 94 SREIVFTRNATEAINLVAYTWGL-----ANLKpGDEV-------------ILSVAEHHSNIVPWQLVAQKTGAVLKFVGL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 85 SKvNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEISRRIKALNQiraasglpRVLVhtDAAQALGKRRVDVEDL 164
Cdd:PLN02855 156 TP-DEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGA--------KVLV--DACQSVPHMPVDVQTL 224
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 165 GVDFLTIVGHKFYGPR-IGALYvrgvGKLTPLYPM--LFGGGQ---------------EWNFRPGtenTPMIA---GLGK 223
Cdd:PLN02855 225 GADFLVASSHKMCGPTgIGFLW----GKSDLLESMppFLGGGEmisdvfldhstyappPSRFEAG---TPAIGeaiGLGA 297
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 224 AADLVSE----NCETYEahmRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPnTCNFSIQGSQLqgyTVLAqcrTLL-AS 298
Cdd:PLN02855 298 AIDYLSEigmdRIHEYE---VELGTYLYEKLSSVPGVRIYGPKPSEGVGRAA-LCAFNVEGIHP---TDLS---TFLdQQ 367
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*.
gi 568909395 299 VGASCHSNHEdRPSPVLLSCGIPVdvarnAVRLSVGRGTTRADVDLIVQDLKQAVA 354
Cdd:PLN02855 368 HGVAIRSGHH-CAQPLHRYLGVNA-----SARASLYFYNTKEEVDAFIHALKDTIA 417
|
|
| PRK09295 |
PRK09295 |
cysteine desulfurase SufS; |
6-252 |
8.77e-18 |
|
cysteine desulfurase SufS;
Pssm-ID: 181766 [Multi-domain] Cd Length: 406 Bit Score: 84.03 E-value: 8.77e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 6 PQDIIFTSGGTESNNLVIHSMVRcfheQQTLKGNmvdqhspeegtrpHFITCTVEHDSIRLPLEHLVENQMAEVTFVPVS 85
Cdd:PRK09295 85 AEELVFVRGTTEGINLVANSWGN----SNVRAGD-------------NIIISEMEHHANIVPWQMLCARVGAELRVIPLN 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 86 kVNGQAEVEDILAAVRPTTCLVTIMLANNETGVIMPVSEIsrrikaLNQIRAASGlpRVLVhtDAAQALGKRRVDVEDLG 165
Cdd:PRK09295 148 -PDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEM------IALAHQHGA--KVLV--DGAQAVMHHPVDVQALD 216
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 166 VDFLTIVGHKFYGPR-IGALYVRgvGKLTPLYPMLFGGGQ----------------EWNFRPGTENTPMIAGLGKAADLV 228
Cdd:PRK09295 217 CDFYVFSGHKLYGPTgIGILYVK--EALLQEMPPWEGGGSmiatvsltegttwakaPWRFEAGTPNTGGIIGLGAALDYV 294
|
250 260
....*....|....*....|....*...
gi 568909395 229 S----ENCETYEahmRDIRDYLEERLEA 252
Cdd:PRK09295 295 SalglNNIAEYE---QNLMHYALSQLES 319
|
|
| PRK10874 |
PRK10874 |
cysteine desulfurase CsdA; |
5-356 |
1.92e-12 |
|
cysteine desulfurase CsdA;
Pssm-ID: 182799 [Multi-domain] Cd Length: 401 Bit Score: 67.76 E-value: 1.92e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 5 KPQDIIFTSGGTESNNLVIHSMVRcfheqqtlkgnmvdqhspeegtrPHF------ITCTVEHDSIRLPLEHLVENQMAE 78
Cdd:PRK10874 80 DAKNIVWTRGTTESINLVAQSYAR-----------------------PRLqpgdeiIVSEAEHHANLVPWLMVAQQTGAK 136
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 79 VTFVPVskvnGQAEVEDIlaAVRPTtclvtimLANNETgvimpvseisrRIKALNQIRAASG----LPRV---------L 145
Cdd:PRK10874 137 VVKLPL----GADRLPDV--DLLPE-------LITPRT-----------RILALGQMSNVTGgcpdLARAitlahqagmV 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 146 VHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYvrgvGK---LTPLYPMLfGGGQ---------------EW 206
Cdd:PRK10874 193 VMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTgIGVLY----GKselLEAMSPWQ-GGGKmltevsfdgftpqsaPW 267
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 207 NFRPGTENTPMIAGLGKAAD-LVSENCETYEAHMRDIRDYLEERLeaefgkrihlnSRFPGVErlpntcNFSIQGSQLQG 285
Cdd:PRK10874 268 RFEAGTPNVAGVIGLSAALEwLADIDINQAESWSRSLATLAEDAL-----------AKLPGFR------SFRCQDSSLLA 330
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568909395 286 YTV-------LAqcrTLLASVGASCHSNHEdRPSPVLLSCGIPvdvarNAVRLSVGRGTTRADVDLIVQDLKQAVAQL 356
Cdd:PRK10874 331 FDFagvhhsdLV---TLLAEYGIALRAGQH-CAQPLLAALGVT-----GTLRASFAPYNTQSDVDALVNAVDRALELL 399
|
|
| f2_encap_cargo1 |
NF041166 |
family 2A encapsulin nanocompartment cargo protein cysteine desulfurase; Capsid-like ... |
102-236 |
6.67e-08 |
|
family 2A encapsulin nanocompartment cargo protein cysteine desulfurase; Capsid-like encapsulin nanocompartments are commonly found in bacteria and archaea. Encapsulin nanocompartments, which are assembled from shell proteins, encapsulate various cargo proteins, typically peroxidases or ferritin-like proteins, to protect cells from oxidative stress caused by peroxide. Proteins of this family are cysteine desulfurases with an additional N-terminal encapsulation targeting sequence (~200 aa) that is necessary and sufficient for compartmentalization.
Pssm-ID: 469077 [Multi-domain] Cd Length: 623 Bit Score: 54.09 E-value: 6.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 102 PTTCLVTIMLANNETGVIMPVSEI---SRRIKAlnqiraasglpRVLVhtDAAQALGKRRVDVEDLGVDFLTIVGHKFYG 178
Cdd:NF041166 385 PRTKLVSVTQVSNALGTVTPVKEIialAHRAGA-----------KVLV--DGAQSVSHMPVDVQALDADFFVFSGHKVFG 451
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 179 PR-IGALYvrgvGKL-----TPLYPmlfGGGqewN------------------FRPGTENtpmIA---GLGKAADLVS-- 229
Cdd:NF041166 452 PTgIGVVY----GKRdlleaMPPWQ---GGG---NmiadvtfektvyqpapnrFEAGTGN---IAdavGLGAALDYVEri 518
|
....*....
gi 568909395 230 --ENCETYE 236
Cdd:NF041166 519 giENIARYE 527
|
|
| DOPA_deC_like |
cd06450 |
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ... |
1-352 |
2.09e-05 |
|
DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Pssm-ID: 99743 [Multi-domain] Cd Length: 345 Bit Score: 46.04 E-value: 2.09e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 1 MIGGKPQDI--IFTSGGTESNNLVIHSM-VRCFHEQQTLkgnmvdqhSPEEGTRPHFITCTVEHDSIRLPLEHLvenqMA 77
Cdd:cd06450 50 LFGLPSEDAdgVFTSGGSESNLLALLAArDRARKRLKAG--------GGRGIDKLVIVCSDQAHVSVEKAAAYL----DV 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 78 EVTFVPVSKvNGQAEVEDILAAV--RPTTCLVTIMLA----NNETGVIMPvseisrrIKALNQIRAASGLPrvlVHTDAA 151
Cdd:cd06450 118 KVRLVPVDE-DGRMDPEALEAAIdeDKAEGLNPIMVVatagTTDTGAIDP-------LEEIADLAEKYDLW---LHVDAA 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 152 QALG------KRRVD--VEdlGVDFLTIVGHKFYG--PRIGALYVRGVGkltpLYPMLfgggqewnFRPGTENtpmiagl 221
Cdd:cd06450 187 YGGFllpfpePRHLDfgIE--RVDSISVDPHKYGLvpLGCSAVLVRALK----LWATL--------RRFGRDG------- 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568909395 222 gkaadlvsencetYEAHMRDIRD---YLEERLEAEfgKRIHLNsrfpGVERLPNTCnFSIQGSQLQGYTVLAQCRTLLAS 298
Cdd:cd06450 246 -------------YGEHIDRIVDlakYLAELIRAD--PGFELL----GEPNLSLVC-FRLKPSVKLDELNYDLSDRLNER 305
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568909395 299 VGAscHSNHEDRPSPvllscgipvdvarNAVRLSVGRG-TTRADVDLIVQDLKQA 352
Cdd:cd06450 306 GGW--HVPATTLGGP-------------NVLRFVVTNPlTTRDDADALLEDIERA 345
|
|
| |
