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Conserved domains on  [gi|568935438|ref|XP_006534909|]
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tetratricopeptide repeat protein 28 isoform X2 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
1272-1595 1.88e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


:

Pssm-ID: 432771  Cd Length: 287  Bit Score: 192.59  E-value: 1.88e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1272 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1351
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1352 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1427
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1428 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1501
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1502 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1580
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
                          330
                   ....*....|....*....
gi 568935438  1581 ----FSHPSNWAGFTLIGS 1595
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
PEP_TPR_lipo super family cl37187
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
9-819 2.99e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


The actual alignment was detected with superfamily member TIGR02917:

Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.15  E-value: 2.99e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438     9 KAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQEL 88
Cdd:TIGR02917  194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALVD 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438    89 LTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgnL 162
Cdd:TIGR02917  272 FQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------L 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   163 GSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGNM 242
Cdd:TIGR02917  336 ASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQL 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   243 GAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIEM 316
Cdd:TIGR02917  404 GISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHNL 470
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   317 RAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQEL 389
Cdd:TIGR02917  471 LGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILAL 539
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   390 SDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIAREL 469
Cdd:TIGR02917  540 AGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNEA 593
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   470 RDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:TIGR02917  594 ADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   549 lHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgls 626
Cdd:TIGR02917  668 -NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL--- 730
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   627 hhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 704
Cdd:TIGR02917  731 ------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   705 lgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYEQ 784
Cdd:TIGR02917  799 -----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLRK 862
                          810       820       830
                   ....*....|....*....|....*....|....*.
gi 568935438   785 YLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 819
Cdd:TIGR02917  863 AVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR_MalT super family cl40220
MalT-like TPR region; This entry contains a series of TPR repeats.
727-1030 2.46e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


The actual alignment was detected with superfamily member pfam17874:

Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.64  E-value: 2.46e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   727 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 806
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   807 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 883
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   884 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 944
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   945 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1024
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305

                   ....*.
gi 568935438  1025 ASALFE 1030
Cdd:pfam17874  306 ALSLAE 311
PHA03377 super family cl31823
EBNA-3C; Provisional
1931-2315 1.63e-06

EBNA-3C; Provisional


The actual alignment was detected with superfamily member PHA03377:

Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1931 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2008
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2009 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2087
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2088 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2159
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2160 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2238
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2239 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2311
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859

                  ....
gi 568935438 2312 APRP 2315
Cdd:PHA03377  860 PPRL 863
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
1272-1595 1.88e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771  Cd Length: 287  Bit Score: 192.59  E-value: 1.88e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1272 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1351
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1352 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1427
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1428 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1501
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1502 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1580
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
                          330
                   ....*....|....*....
gi 568935438  1581 ----FSHPSNWAGFTLIGS 1595
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
1263-1595 2.01e-24

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 227328 [Multi-domain]  Cd Length: 420  Bit Score: 108.63  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1263 LPRRQNSLAKPPLRALYDLLIAPMEGGLMHSsgpvgRHRQLVLVLEGELYFVPFALLKgsASNEYLYERFTLIAVPAvrs 1342
Cdd:COG4995   130 VAPRTPQELKASSQQLYDWLISPIESLLKAL-----EIKTLIFVLDGALRNVPMAALY--DGKQYLIEKYAIATSPG--- 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1343 lgphskchLRKTPPTYSSSTTMAAVIGNPKLPSAVmDRWLWGPMPSAEEEAFMVSELLGCQPLVGSMATK---ERVMSAL 1419
Cdd:COG4995   200 --------LQLTDSKPLRQQNLKVLAAGLSEPSGP-ARTGFDALPFAALEVETIAAIFPPQKLLLNQAFTaanLAQEIDT 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1420 TQAECVHFATHVSwklsalvltpNTEGNPAGSKSSFGhpytipeslrvqDDASDVESISDCppLRELLLTAadlldlrLS 1499
Cdd:COG4995   271 KPYSVVHLATHGQ----------FSSGNPEDSFLLLW------------DGPINVTELDIL--LRNRNNNL-------LP 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1500 VKLVVLSSSQEANGRVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLN-GLKASASLGEAM-KVVQS 1577
Cdd:COG4995   320 VELVVLSACQTALGEGDGRAYLGLAGGAVYAGAKSALASLWSVDDESTAALMTEFYRKLQQaQLTKAEALRQAQlKLLEG 399
                         330
                  ....*....|....*...
gi 568935438 1578 SKAFSHPSNWAGFTLIGS 1595
Cdd:COG4995   400 NPEFSHPYYWAAFTLIGN 417
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
9-819 2.99e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.15  E-value: 2.99e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438     9 KAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQEL 88
Cdd:TIGR02917  194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALVD 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438    89 LTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgnL 162
Cdd:TIGR02917  272 FQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------L 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   163 GSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGNM 242
Cdd:TIGR02917  336 ASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQL 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   243 GAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIEM 316
Cdd:TIGR02917  404 GISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHNL 470
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   317 RAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQEL 389
Cdd:TIGR02917  471 LGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILAL 539
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   390 SDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIAREL 469
Cdd:TIGR02917  540 AGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNEA 593
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   470 RDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:TIGR02917  594 ADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   549 lHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgls 626
Cdd:TIGR02917  668 -NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL--- 730
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   627 hhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 704
Cdd:TIGR02917  731 ------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   705 lgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYEQ 784
Cdd:TIGR02917  799 -----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLRK 862
                          810       820       830
                   ....*....|....*....|....*....|....*.
gi 568935438   785 YLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 819
Cdd:TIGR02917  863 AVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
325-599 3.90e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 90.29  E-value: 3.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  325 AARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAYGNMGN 404
Cdd:COG0457    28 AGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK----ALELELLPNLAEALLNLGL 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  405 AYNALGMYDQAVKYHRQELQIsmevnDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIqseARALSNLGN 484
Cdd:COG0457   104 LLEALGKYEEALELLEKALAL-----DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL---AEALLALGA 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  485 FHCSRGEYVQAAPYYEQYLRLAPDLqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKL-SQAKAYCNLG 563
Cdd:COG0457   176 LLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALyNLALLLLELG 250
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 568935438  564 LAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRAL 599
Cdd:COG0457   251 RYEEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
TPR_12 pfam13424
Tetratricopeptide repeat;
716-791 1.40e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.40e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438   716 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
727-1030 2.46e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.64  E-value: 2.46e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   727 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 806
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   807 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 883
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   884 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 944
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   945 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1024
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305

                   ....*.
gi 568935438  1025 ASALFE 1030
Cdd:pfam17874  306 ALSLAE 311
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
398-508 1.10e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 477
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568935438  478 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 508
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
PHA03377 PHA03377
EBNA-3C; Provisional
1931-2315 1.63e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1931 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2008
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2009 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2087
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2088 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2159
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2160 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2238
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2239 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2311
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859

                  ....
gi 568935438 2312 APRP 2315
Cdd:PHA03377  860 PPRL 863
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
1913-2235 2.70e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1913 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 1990
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1991 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2067
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2068 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2144
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2145 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2224
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734
                          330
                   ....*....|.
gi 568935438  2225 QSTPQPPRGPR 2235
Cdd:pfam05109  735 ATSPQAPSGQK 745
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
760-784 1.79e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 1.79e-05
                            10        20
                    ....*....|....*....|....*
gi 568935438    760 RAYGNLGDCYEALGDYEEAIKYYEQ 784
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
PilF COG3063
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
799-1000 8.96e-04

Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];


Pssm-ID: 225605 [Multi-domain]  Cd Length: 250  Bit Score: 43.18  E-value: 8.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  799 AKAYRGLGNGHRATGSLQQALVCFEKrlVVAHelgeASNKAQAYGELGSLHSQLGnyeqaisclerQLNIARDMKDRALE 878
Cdd:COG3063    35 AKARLQLALGYLQQGDYAQAKKNLEK--ALEH----DPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALS 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  879 SDAACG-----LGGVYQQMGEYDTALQYHqldLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQmN 953
Cdd:COG3063    98 LAPNNGdvlnnYGAFLCAQGRPEEAMQQF---ERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-F 172
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438  954 DLVAKTvsyssLGRTHHALQNYSQAVMYLQE--------------GLRLAEQLGRREDEAK 1000
Cdd:COG3063   173 PPALLE-----LARLHYKAGDYAPARLYLERyqqrggaqaeslllGIRIAKRLGDRAAAQR 228
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
839-872 9.29e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.29e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 568935438    839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 872
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
890-1022 1.51e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  890 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 969
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935438  970 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1022
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
 
Name Accession Description Interval E-value
CHAT pfam12770
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ...
1272-1595 1.88e-54

CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.


Pssm-ID: 432771  Cd Length: 287  Bit Score: 192.59  E-value: 1.88e-54
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1272 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1351
Cdd:pfam12770    1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1352 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1427
Cdd:pfam12770   70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1428 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1501
Cdd:pfam12770  146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1502 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1580
Cdd:pfam12770  189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
                          330
                   ....*....|....*....
gi 568935438  1581 ----FSHPSNWAGFTLIGS 1595
Cdd:pfam12770  269 rekpRHHPYYWAGFVLVGD 287
COG4995 COG4995
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
1263-1595 2.01e-24

Uncharacterized conserved protein, contains CHAT domain [Function unknown];


Pssm-ID: 227328 [Multi-domain]  Cd Length: 420  Bit Score: 108.63  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1263 LPRRQNSLAKPPLRALYDLLIAPMEGGLMHSsgpvgRHRQLVLVLEGELYFVPFALLKgsASNEYLYERFTLIAVPAvrs 1342
Cdd:COG4995   130 VAPRTPQELKASSQQLYDWLISPIESLLKAL-----EIKTLIFVLDGALRNVPMAALY--DGKQYLIEKYAIATSPG--- 199
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1343 lgphskchLRKTPPTYSSSTTMAAVIGNPKLPSAVmDRWLWGPMPSAEEEAFMVSELLGCQPLVGSMATK---ERVMSAL 1419
Cdd:COG4995   200 --------LQLTDSKPLRQQNLKVLAAGLSEPSGP-ARTGFDALPFAALEVETIAAIFPPQKLLLNQAFTaanLAQEIDT 270
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1420 TQAECVHFATHVSwklsalvltpNTEGNPAGSKSSFGhpytipeslrvqDDASDVESISDCppLRELLLTAadlldlrLS 1499
Cdd:COG4995   271 KPYSVVHLATHGQ----------FSSGNPEDSFLLLW------------DGPINVTELDIL--LRNRNNNL-------LP 319
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1500 VKLVVLSSSQEANGRVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLN-GLKASASLGEAM-KVVQS 1577
Cdd:COG4995   320 VELVVLSACQTALGEGDGRAYLGLAGGAVYAGAKSALASLWSVDDESTAALMTEFYRKLQQaQLTKAEALRQAQlKLLEG 399
                         330
                  ....*....|....*...
gi 568935438 1578 SKAFSHPSNWAGFTLIGS 1595
Cdd:COG4995   400 NPEFSHPYYWAAFTLIGN 417
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
9-819 2.99e-19

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.15  E-value: 2.99e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438     9 KAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQEL 88
Cdd:TIGR02917  194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALVD 271
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438    89 LTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgnL 162
Cdd:TIGR02917  272 FQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------L 335
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   163 GSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGNM 242
Cdd:TIGR02917  336 ASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQL 403
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   243 GAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIEM 316
Cdd:TIGR02917  404 GISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHNL 470
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   317 RAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQEL 389
Cdd:TIGR02917  471 LGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILAL 539
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   390 SDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIAREL 469
Cdd:TIGR02917  540 AGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNEA 593
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   470 RDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:TIGR02917  594 ADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   549 lHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgls 626
Cdd:TIGR02917  668 -NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL--- 730
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   627 hhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 704
Cdd:TIGR02917  731 ------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   705 lgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYEQ 784
Cdd:TIGR02917  799 -----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLRK 862
                          810       820       830
                   ....*....|....*....|....*....|....*.
gi 568935438   785 YLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 819
Cdd:TIGR02917  863 AVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
325-599 3.90e-19

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 90.29  E-value: 3.90e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  325 AARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAYGNMGN 404
Cdd:COG0457    28 AGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK----ALELELLPNLAEALLNLGL 103
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  405 AYNALGMYDQAVKYHRQELQIsmevnDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIqseARALSNLGN 484
Cdd:COG0457   104 LLEALGKYEEALELLEKALAL-----DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL---AEALLALGA 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  485 FHCSRGEYVQAAPYYEQYLRLAPDLqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKL-SQAKAYCNLG 563
Cdd:COG0457   176 LLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALyNLALLLLELG 250
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 568935438  564 LAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRAL 599
Cdd:COG0457   251 RYEEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
576-877 1.92e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 88.36  E-value: 1.92e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  576 EECQKYLLSLAQSLDNSQAKFRALGNLgdIFICKKDINGAIKFYEQQLGLShhvkDRRLEASAYAALGTAYRMVQKYDKA 655
Cdd:COG0457     5 LLALAILLEALAKLLAEALALLEAGLA--LLELLGELAEALELLEEALELL----PNSDLAGLLLLLALALLKLGRLEEA 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  656 LgyhtQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepSLEAQVYGNMGItKMNMNVMEDA 735
Cdd:COG0457    79 L----ELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----PDLAEALLALGA-LYELGDYEEA 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  736 IGYFEQQLAMlqqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNrmqdqAKAYRGLGNGHRATGSL 815
Cdd:COG0457   150 LELYEKALEL------DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKLGKY 218
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438  816 QQALVCFEKRLVVAHelgeasNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL 877
Cdd:COG0457   219 EEALEYYEKALELDP------DNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGL 274
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
166-1032 5.46e-18

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 91.30  E-value: 5.46e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   166 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALASHKQCVLL---AKQSKDDLSEArelgnm 242
Cdd:TIGR02917   32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLgypKNQVLPLLARA------ 99
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   243 gavYIAMGDFENAVQCHEqhlriAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELMEKpiemRAYAGL 322
Cdd:TIGR02917  100 ---YLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----SLYAKL 163
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   323 GHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAygNM 402
Cdd:TIGR02917  164 GLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVLL--AL 233
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   403 GNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLA-VAYQAlGAHDRALQHYQNHLNIARElrdiQSEARALSN 481
Cdd:TIGR02917  234 ATILIEAGEFEEAEKHADALLKKA------PNSPLAHYLKAlVDFQK-KNYEDARETLQDALKSAPE----YLPALLLAG 302
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   482 LGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYC 560
Cdd:TIGR02917  303 ASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALS 367
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   561 NLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAKFRAlgNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLeasaya 640
Cdd:TIGR02917  368 LLGEAYLALGDFEKAAE----YLAKATELDPENAAART--QLGISKLSQGDPSEAIADLETAAQLDPELGRADL------ 435
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   641 ALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY- 719
Cdd:TIGR02917  436 LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANl 505
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   720 GNMGITKMNmnvMEDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKY 781
Cdd:TIGR02917  506 ARIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQ 582
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   782 YEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAIS 860
Cdd:TIGR02917  583 LKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAIT 656
                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   861 CLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFER 937
Cdd:TIGR02917  657 SLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQKDYPA 721
                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   938 AVVYQEQHLSIAAQmNDLVAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEE 1017
Cdd:TIGR02917  722 AIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------AELYL 781
                          890
                   ....*....|....*
gi 568935438  1018 AQHQLYRASALFETI 1032
Cdd:TIGR02917  782 AQKDYDKAIKHYQTV 796
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
682-955 5.57e-18

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 86.82  E-value: 5.57e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  682 LAAVYMALGKYTMAFKCYQEQLELGRKlkepSLEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLsgnesvlDRGRA 761
Cdd:COG0457    29 GLALLELLGELAEALELLEEALELLPN----SDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEA 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  762 YGNLGDCYEALGDYEEAIKYYEQYLsvaqSLNRMQDQAKAYRGLGNgHRATGSLQQALVCFEKRLVVAHELgeaSNKAQA 841
Cdd:COG0457    98 LLNLGLLLEALGKYEEALELLEKAL----ALDPDPDLAEALLALGA-LYELGDYEEALELYEKALELDPEL---NELAEA 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  842 YGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESdaacgLGGVYQQMGEYDTALQYHQLDLQIAEETDNptcqgrA 921
Cdd:COG0457   170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN-----LGLLYLKLGKYEEALEYYEKALELDPDNAE------A 238
                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935438  922 YGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 955
Cdd:COG0457   239 LYNLALLLLELGRYEEALEALEKALELDPDLYNL 272
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
529-802 9.10e-17

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 83.36  E-value: 9.10e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  529 LGNYQEAVKYYEQDLALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFralgNLGDIFIC 608
Cdd:COG0457    36 LGELAEALELLEEALELLPNSDL----AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL----NLGLLLEA 107
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  609 KKDINGAIKFYEQQLGLSHHvkdrRLEASAYAALGTAYRMvQKYDKALGYHTQELEVYQELSDLPGECRAhghLAAVYMA 688
Cdd:COG0457   108 LGKYEEALELLEKALALDPD----PDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEALLA---LGALLEA 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  689 LGKYTMAFKCYQEQLELgrklkEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLsgNESVLDRGRAYGNLGDC 768
Cdd:COG0457   180 LGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN--AEALYNLALLLLELGRY 252
                         250       260       270
                  ....*....|....*....|....*....|....
gi 568935438  769 YEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAY 802
Cdd:COG0457   253 EEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
186-869 4.06e-15

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 81.67  E-value: 4.06e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   186 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAvqchE 260
Cdd:TIGR02917  178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL------ALATILIEAGEFEEA----E 247
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   261 QHLRIAKdlgskreeARAYSNLGSAY-----HYRR-NFDKAMSYHNCVLELAQELMEkpieMRAYAGLGHAARcmQDLER 334
Cdd:TIGR02917  248 KHADALL--------KKAPNSPLAHYlkalvDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQ 313
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   335 AKQYHEQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQ 414
Cdd:TIGR02917  314 AYQYLNQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEK 381
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   415 AVKY-------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQ 473
Cdd:TIGR02917  382 AAEYlakateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQ 461
                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   474 SEARALSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDL 549
Cdd:TIGR02917  462 PDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRA 535
                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   550 HDKLSQAKAYCN--------LGLAFKA-------LLNFAKAEECQKYL---LSLAQS-LDNSQAKFRALGNLGDIFICKK 610
Cdd:TIGR02917  536 ILALAGLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAG 615
                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   611 DINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALG 690
Cdd:TIGR02917  616 DLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAK 683
                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   691 KYTMAFKCYQEQLELGRKLKE-PSLEAQVYgnmgitkMNMNVMEDAIGYFEQ------------QLAMLQQLSGN----- 752
Cdd:TIGR02917  684 RTESAKKIAKSLQKQHPKAALgFELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeav 756
                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   753 ---ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghratgslqqALVCFEKR 825
Cdd:TIGR02917  757 ktlEAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL------------AWLYLELK 818
                          730       740       750       760
                   ....*....|....*....|....*....|....*....|....*....
gi 568935438   826 LVVAHELGE-----ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 869
Cdd:TIGR02917  819 DPRALEYAEralklAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
261-575 2.17e-14

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 76.04  E-value: 2.17e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  261 QHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpiemRAYAGLGHAARCMQDLERAKQYHE 340
Cdd:COG0457     8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLA----GLLLLLALALLKLGRLEEALELLE 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  341 QQLGIAEDLKDraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQgraygNMGNAYNALGMYDQAVKYHR 420
Cdd:COG0457    84 KALELELLPNL----AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL-----LALGALYELGDYEEALELYE 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  421 QELQISMEVNDRASQASthgNLAVAYQALGAHDRALQHYQNHLNIARELrdiqsEARALSNLGNFHCSRGEYVQAAPYYE 500
Cdd:COG0457   155 KALELDPELNELAEALL---ALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYE 226
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438  501 QYLRLAPDLQdmegegKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsQAKAYCNLGLAFKALLNFAKA 575
Cdd:COG0457   227 KALELDPDNA------EALYNLALLLLELGRYEEALEALEKALELDPDL-----YNLGLALLLLLAEALELLEKA 290
TPR_12 pfam13424
Tetratricopeptide repeat;
716-791 1.40e-10

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 59.32  E-value: 1.40e-10
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438   716 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
727-1030 2.46e-10

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 64.64  E-value: 2.46e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   727 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 806
Cdd:pfam17874   12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   807 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 883
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   884 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 944
Cdd:pfam17874  167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   945 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1024
Cdd:pfam17874  242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305

                   ....*.
gi 568935438  1025 ASALFE 1030
Cdd:pfam17874  306 ALSLAE 311
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
161-393 4.05e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 63.33  E-value: 4.05e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  161 NLGSAFFSKGNYREALTNHRHQLVLAMKLKDreaaSSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARElg 240
Cdd:COG0457    64 LLALALLKLGRLEEALELLEKALELELLPNL----AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL-- 137
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  241 nmgAVYIAMGDFENAVQCHEQHLRIAKDLgskREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpiemrAYA 320
Cdd:COG0457   138 ---GALYELGDYEEALELYEKALELDPEL---NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE-----ALL 206
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438  321 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegrASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYA 393
Cdd:COG0457   207 NLGLLYLKLGKYEEALEYYEKALELDPDNAE------ALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
138-355 5.42e-10

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 223533 [Multi-domain]  Cd Length: 291  Bit Score: 62.94  E-value: 5.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  138 YMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSL--GHVYTAIGDYPNA 215
Cdd:COG0457    70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALlaLGALYELGDYEEA 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  216 LASHKQcvlLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDlgskrEEARAYSNLGSAYHYRRNFDKA 295
Cdd:COG0457   150 LELYEK---ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD-----DDAEALLNLGLLYLKLGKYEEA 221
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438  296 MSYHNCVLELAQELMEKPIEM-RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAE 355
Cdd:COG0457   222 LEYYEKALELDPDNAEALYNLaLLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAE 282
TPR_12 pfam13424
Tetratricopeptide repeat;
397-468 1.71e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 56.24  E-value: 1.71e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438   397 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 468
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
839-911 2.73e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.47  E-value: 2.73e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438   839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 911
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
239-308 5.69e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.70  E-value: 5.69e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438   239 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
434-508 6.65e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 54.32  E-value: 6.65e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935438   434 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
195-268 2.21e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 53.16  E-value: 2.21e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438   195 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 268
Cdd:pfam13424    2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
357-425 8.97e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 8.97e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438   357 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
TPR_12 pfam13424
Tetratricopeptide repeat;
757-871 9.23e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.23  E-value: 9.23e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   757 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLnrmqdqakayrgLGNGHRATgslqqalvcfekrlvvahelgeas 836
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRL------------LGPDHPLT------------------------ 44
                           90       100       110
                   ....*....|....*....|....*....|....*
gi 568935438   837 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13424   45 --ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
398-508 1.10e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 50.83  E-value: 1.10e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 477
Cdd:PRK02603   37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 568935438  478 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 508
Cdd:PRK02603  108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
TPR_12 pfam13424
Tetratricopeptide repeat;
881-951 1.26e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 48.15  E-value: 1.26e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438   881 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 951
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PHA03377 PHA03377
EBNA-3C; Provisional
1931-2315 1.63e-06

EBNA-3C; Provisional


Pssm-ID: 177614 [Multi-domain]  Cd Length: 1000  Bit Score: 53.52  E-value: 1.63e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1931 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2008
Cdd:PHA03377  519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2009 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2087
Cdd:PHA03377  589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2088 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2159
Cdd:PHA03377  655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2160 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2238
Cdd:PHA03377  735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2239 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2311
Cdd:PHA03377  791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859

                  ....
gi 568935438 2312 APRP 2315
Cdd:PHA03377  860 PPRL 863
TPR_12 pfam13424
Tetratricopeptide repeat;
961-1030 1.72e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.77  E-value: 1.72e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438   961 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1030
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
TPR_7 pfam13176
Tetratricopeptide repeat;
519-552 1.91e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 46.38  E-value: 1.91e-06
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935438   519 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 552
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
TPR_12 pfam13424
Tetratricopeptide repeat;
274-348 2.50e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 2.50e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935438   274 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELM--EKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 348
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
1913-2235 2.70e-06

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 53.00  E-value: 2.70e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1913 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 1990
Cdd:pfam05109  449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1991 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2067
Cdd:pfam05109  523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2068 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2144
Cdd:pfam05109  600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2145 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2224
Cdd:pfam05109  674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734
                          330
                   ....*....|.
gi 568935438  2225 QSTPQPPRGPR 2235
Cdd:pfam05109  735 ATSPQAPSGQK 745
TPR_7 pfam13176
Tetratricopeptide repeat;
841-876 2.71e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.61  E-value: 2.71e-06
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935438   841 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 876
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_12 pfam13424
Tetratricopeptide repeat;
520-588 2.73e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 2.73e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438   520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQS 588
Cdd:pfam13424    7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PilF COG3063
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
402-545 3.05e-06

Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];


Pssm-ID: 225605 [Multi-domain]  Cd Length: 250  Bit Score: 50.89  E-value: 3.05e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  402 MGNAYNALGM-YDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALS 480
Cdd:COG3063    34 AAKARLQLALgYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLN 107
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438  481 NLGNFHCSRGEYVQAapyyEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 545
Cdd:COG3063   108 NYGAFLCAQGRPEEA----MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
1915-2250 3.34e-06

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 52.87  E-value: 3.34e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1915 RATLPRRQTSPQARRGASKEEEEYEGFSII---SMEPLATYQGEGKTRFSPDPKQPCVKAPGGvrlSVSSKGSVSTPNSP 1991
Cdd:PHA03307   50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEApanESRSTPTWSLSTLAPASPAREGSPTPPGPS---SPDPPPPTPPPASP 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VkmtliPSPNSPFQKVGKLASSDTGESDQSSTETDStVKSQEESTPKLDPQ-ELAQRILEET--------KSHLLAVERL 2062
Cdd:PHA03307  127 P-----PSPAPDLSEMLRPVGSPGPPPAASPPAAGA-SPAAVASDAASSRQaALPLSSPEETarapssppAEPPPSTPPA 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2063 QRSGGPAGPDREDSVVAPSST------TVFRASETSAFSKPILShQRSQLSPLTVKPQPPARSSSLPKVS-SPATSEVSG 2135
Cdd:PHA03307  201 AASPRPPRRSSPISASASSPApapgrsAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIwEASGWNGPS 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2136 KDGLSPPGSSHPSPGRDTPVS------PADPPLFRLKYPSSPYSAHISKSPR--NTSPACSAPSPALSYSSAGSARSSPA 2207
Cdd:PHA03307  280 SRPGPASSSSSPRERSPSPSPsspgsgPAPSSPRASSSSSSSRESSSSSTSSssESSRGAAVSPGPSPSRSPSPSRPPPP 359
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 568935438 2208 DAPDEKVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRD 2250
Cdd:PHA03307  360 ADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRD 402
TPR_7 pfam13176
Tetratricopeptide repeat;
761-793 3.75e-06

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 45.22  E-value: 3.75e-06
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935438   761 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 793
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
TPR_1 pfam00515
Tetratricopeptide repeat;
760-791 4.44e-06

Tetratricopeptide repeat;


Pssm-ID: 425728 [Multi-domain]  Cd Length: 34  Bit Score: 45.11  E-value: 4.44e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935438   760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_12 pfam13424
Tetratricopeptide repeat;
316-388 6.65e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.84  E-value: 6.65e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438   316 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 388
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_8 pfam13181
Tetratricopeptide repeat;
760-791 8.31e-06

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 44.31  E-value: 8.31e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935438   760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_12 pfam13424
Tetratricopeptide repeat;
920-991 1.04e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.46  E-value: 1.04e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438   920 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 991
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_12 pfam13424
Tetratricopeptide repeat;
156-228 1.61e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 45.07  E-value: 1.61e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438   156 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 228
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
760-784 1.79e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 43.20  E-value: 1.79e-05
                            10        20
                    ....*....|....*....|....*
gi 568935438    760 RAYGNLGDCYEALGDYEEAIKYYEQ 784
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR_12 pfam13424
Tetratricopeptide repeat;
636-708 1.97e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 44.69  E-value: 1.97e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438   636 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRK 708
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
PHA03247 PHA03247
large tegument protein UL36; Provisional
1948-2247 2.58e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.94  E-value: 2.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1948 PLATYQGEGKTRFSPDPKQPCVKA----PGGVRLSVSSKGSVSTPNSPvKMTLIPSPNSPfqkvgKLASSDTGESDQSST 2023
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSrarrPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2024 ETDSTVKSQEESTPKLDPQELAqrileetkshllAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAfsKPILSHQR 2103
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDP------------APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV--GSLTSLAD 2700
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2104 SQLSPLTVKPQPPARSSSLPKVSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPlfRLKYPSSPYSAHISKSPRNT 2183
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA--RPPTTAGPPAPAPPAAPAAG 2778
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 2184 SPACSAPSPALSYSSAGSARSSPADAPDEKVQAVHSLKML-WQSTPQPPRGPRKTCRGAPGTLTS 2247
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALpPAASPAGPLPPPTSAQPTAPPPPP 2843
TPR_7 pfam13176
Tetratricopeptide repeat;
478-513 3.25e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.53  E-value: 3.25e-05
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935438   478 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 513
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
PHA03247 PHA03247
large tegument protein UL36; Provisional
1913-2318 3.64e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 49.55  E-value: 3.64e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1913 PQRATLPRRQTSPQARRGASKEEEEYEGFSI-ISMEPLATYQGEGKTRFSPDPKqPCVKAPGGVRLSVSSKGSVSTPNSP 1991
Cdd:PHA03247 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAArPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALP 2736
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VKMTLIPSPNSPfqkvgklaSSDTGESDQSSTETDSTVKSqeeSTPKLDPQELAQRILEETKSHLLAVerlQRSGGPAGP 2071
Cdd:PHA03247 2737 AAPAPPAVPAGP--------ATPGGPARPARPPTTAGPPA---PAPPAAPAAGPPRRLTRPAVASLSE---SRESLPSPW 2802
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2072 DRED--SVVAPSSTTVFRASETSAFSKPilshqrsqlsPLTVKPQPPARSSSLPKVSSPATSEVSgkDGLSPPGSSHPSP 2149
Cdd:PHA03247 2803 DPADppAAVLAPAAALPPAASPAGPLPP----------PTSAQPTAPPPPPGPPPPSLPLGGSVA--PGGDVRRRPPSRS 2870
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2150 GRDTPVSPADPPLFRLKYPSSPYSAHISKSPRNTSPACSAPSPAlsyssagsarSSPADAPDEKVQAvhslkmlwQSTPQ 2229
Cdd:PHA03247 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP----------PPPQPQPQPPPPP--------QPQPP 2932
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2230 PPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGKEEGG---ADRLELKELSVQRHDEVPPKVPTNGHWCTDTATLTTAGG 2306
Cdd:PHA03247 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGrvaVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012
                         410
                  ....*....|..
gi 568935438 2307 RSTTAAPRPLRL 2318
Cdd:PHA03247 3013 LHEETDPPPVSL 3024
TPR_12 pfam13424
Tetratricopeptide repeat;
597-668 4.36e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.53  E-value: 4.36e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438   597 RALGNLGDIFICKKDINGAIKFYEQQLGLSHHV--KDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 668
Cdd:pfam13424    4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_7 pfam13176
Tetratricopeptide repeat;
239-272 5.57e-05

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 42.14  E-value: 5.57e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935438   239 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSK 272
Cdd:pfam13176    2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
PHA03378 PHA03378
EBNA-3B; Provisional
1992-2315 6.57e-05

EBNA-3B; Provisional


Pssm-ID: 223065 [Multi-domain]  Cd Length: 991  Bit Score: 48.52  E-value: 6.57e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESTPKLDPQELaQRILEETKSHLlaverlqRSGG 2067
Cdd:PHA03378  520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQL-------ASSA 589
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2068 PAGPDREDSVVAPSS-----TTVFRASETSA----------------------FSKPILS--HQRSQLSPLTVK------ 2112
Cdd:PHA03378  590 PSYAQTPWPVPHPSQtpeppTTQSHIPETSAprqwpmplrpipmrplrmqpitFNVLVFPtpHQPPQVEITPYKptwtqi 669
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2113 ------PQPPARSSSLPKVSSPATSEVSGKdglsppgsshpspgRDTPVSPADPPLFRLKYPSSPYSAH--ISKSPRNTS 2184
Cdd:PHA03378  670 ghipyqPSPTGANTMLPIQWAPGTMQPPPR--------------APTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRAR 735
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2185 PACSAPSPALSYSSAGSARSSPADAPDE-KVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGK 2263
Cdd:PHA03378  736 PPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 568935438 2264 EEGGADRLELKELSVQRHDEVPPkvptnghwctdTATLTTAGGRSTTAAPRP 2315
Cdd:PHA03378  816 GQQGPTKQILRQLLTGGVKRGRP-----------SLKKPAALERQAAAGPTP 856
Atrophin-1 pfam03154
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ...
1945-2236 1.36e-04

Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.


Pssm-ID: 427171 [Multi-domain]  Cd Length: 991  Bit Score: 47.45  E-value: 1.36e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  1945 SMEPLATyqGEGKTRFSPD----PKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTL------IPSPNSPFQKVGKLASSD 2014
Cdd:pfam03154   13 SMSTLRS--GRKKQTASPDgrasPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSkkikeeAPSPLKSAKRQREKGASD 90
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2015 TGESDQSSTETDstvKSQEESTPKlDPQE------LAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRA 2088
Cdd:pfam03154   91 TEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQI 166
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2089 SETsafSKPILSHQRSQLSPLTVKPQ---------PPARSSSLPKVSSPATSE-------VSGKDGLSPPGSSHPSPGRD 2152
Cdd:pfam03154  167 LQT---QPPVLQAQSGAASPPSPPPPgttqaatagPTPSAPSVPPQGSPATSQppnqtqsTAAPHTLIQQTPTLHPQRLP 243
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2153 TPVSPADP-----------------PLFRLKYPSSPYSAHiSKSPRNTSPACSAPSPALSYSSAGSARSSPA-DAPDEKV 2214
Cdd:pfam03154  244 SPHPPLQPmtqppppsqvspqplpqPSLHGQMPPMPHSLQ-TGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSpAAPGQSQ 322
                          330       340
                   ....*....|....*....|..
gi 568935438  2215 QAVHSLKMlwQSTPQPPRGPRK 2236
Cdd:pfam03154  323 QRIHTPPS--QSQLQSQQPPRE 342
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
517-548 1.92e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 40.58  E-value: 1.92e-04
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935438   517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_7 pfam13176
Tetratricopeptide repeat;
398-433 3.33e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 39.83  E-value: 3.33e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 568935438   398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 433
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
TPR_8 pfam13181
Tetratricopeptide repeat;
839-871 3.97e-04

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 39.69  E-value: 3.97e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935438   839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
760-787 4.01e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 39.43  E-value: 4.01e-04
                           10        20
                   ....*....|....*....|....*...
gi 568935438   760 RAYGNLGDCYEALGDYEEAIKYYEQYLS 787
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
517-548 4.63e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.63e-04
                            10        20        30
                    ....*....|....*....|....*....|..
gi 568935438    517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
276-308 4.81e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.35  E-value: 4.81e-04
                            10        20        30
                    ....*....|....*....|....*....|...
gi 568935438    276 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
Herpes_BLLF1 pfam05109
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ...
2065-2337 8.13e-04

Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.


Pssm-ID: 282904 [Multi-domain]  Cd Length: 886  Bit Score: 44.91  E-value: 8.13e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2065 SGGPAGPDREDSVVAPSST--TVFRASETSafskPILSHQRSQLSPLTVKPQP--PARSSSLPKVSSPaTSEVSgkdgLS 2140
Cdd:pfam05109  446 TGLPSSTHVPTNLTAPASTgpTVSTADVTS----PTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSP-TSAVT----TP 516
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2141 PPGSSHPSPGRDTPVSPADPPLFRLKYPSS----PYSAHISKSPRNTSPACSAPSPALSYSSAGSARSSP---ADAP--- 2210
Cdd:pfam05109  517 TPNATSPTPAVTTPTPNATSPTLGKTSPTSavttPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPtvg 596
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  2211 DEKVQAVHSLKML--WQSTP---QPPRGPRKTCRGAPGTLTSKRDvlSLLNLSPRHGKEEGGAdrlELKELSVQRHDEVP 2285
Cdd:pfam05109  597 ETSPQANTTNHTLggTSSTPvvtSPPKNATSAVTTGQHNITSSST--SSMSLRPSSISETLSP---STSDNSTSHMPLLT 671
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....
gi 568935438  2286 PKVPTNGHWCTDTATLTTAGGRSTTA--APRPLRLPLANGykflsPGRLFPSSK 2337
Cdd:pfam05109  672 SAHPTGGENITQVTPASTSTHHVSTSspAPRPGTTSQASG-----PGNSSTSTK 720
PilF COG3063
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
799-1000 8.96e-04

Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];


Pssm-ID: 225605 [Multi-domain]  Cd Length: 250  Bit Score: 43.18  E-value: 8.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  799 AKAYRGLGNGHRATGSLQQALVCFEKrlVVAHelgeASNKAQAYGELGSLHSQLGnyeqaisclerQLNIARDMKDRALE 878
Cdd:COG3063    35 AKARLQLALGYLQQGDYAQAKKNLEK--ALEH----DPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALS 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  879 SDAACG-----LGGVYQQMGEYDTALQYHqldLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQmN 953
Cdd:COG3063    98 LAPNNGdvlnnYGAFLCAQGRPEEAMQQF---ERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-F 172
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438  954 DLVAKTvsyssLGRTHHALQNYSQAVMYLQE--------------GLRLAEQLGRREDEAK 1000
Cdd:COG3063   173 PPALLE-----LARLHYKAGDYAPARLYLERyqqrggaqaeslllGIRIAKRLGDRAAAQR 228
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
839-872 9.29e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 38.58  E-value: 9.29e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 568935438    839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 872
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
890-1022 1.51e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 41.58  E-value: 1.51e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  890 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 969
Cdd:PRK02603   46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 568935438  970 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1022
Cdd:PRK02603  108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
387-508 1.57e-03

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 43.92  E-value: 1.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  387 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 458
Cdd:PRK11447  294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|
gi 568935438  459 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:PRK11447  374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
397-421 1.61e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.81  E-value: 1.61e-03
                            10        20
                    ....*....|....*....|....*
gi 568935438    397 RAYGNMGNAYNALGMYDQAVKYHRQ 421
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEK 26
TPR_1 pfam00515
Tetratricopeptide repeat;
476-508 1.74e-03

Tetratricopeptide repeat;


Pssm-ID: 425728 [Multi-domain]  Cd Length: 34  Bit Score: 37.79  E-value: 1.74e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935438   476 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
TPR_1 pfam00515
Tetratricopeptide repeat;
397-425 2.12e-03

Tetratricopeptide repeat;


Pssm-ID: 425728 [Multi-domain]  Cd Length: 34  Bit Score: 37.40  E-value: 2.12e-03
                           10        20
                   ....*....|....*....|....*....
gi 568935438   397 RAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
ycf3 CHL00033
photosystem I assembly protein Ycf3
367-508 2.15e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  367 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 444
Cdd:CHL00033   46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438  445 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 508
Cdd:CHL00033  115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
ycf3 CHL00033
photosystem I assembly protein Ycf3
432-546 2.39e-03

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 41.15  E-value: 2.39e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  432 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 510
Cdd:CHL00033   31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 568935438  511 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 546
Cdd:CHL00033  108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
TPR_1 pfam00515
Tetratricopeptide repeat;
517-548 3.05e-03

Tetratricopeptide repeat;


Pssm-ID: 425728 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 3.05e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 568935438   517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
YciM COG2956
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted ...
362-650 3.49e-03

Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 225504 [Multi-domain]  Cd Length: 389  Bit Score: 42.00  E-value: 3.49e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  362 LGIIHQMKGDYDTALKLHKTHLciaqELSDYAAQGR--AYGNMGNAYNALGMYDQAVKYHRQelqiSMEVNDRASQASTH 439
Cdd:COG2956    75 LGNLFRSRGEVDRAIRIHQTLL----ESPDLTFEQRllALQQLGRDYMAAGLLDRAEDIFNQ----LVDEGEFAEGALQQ 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  440 gnLAVAYQAlgahDRalqHYQNHLNIARELRDIQSEARALsNLGNFHCsrgEYVQAAPYYEQYLRLAPDLQDMEGEGKVC 519
Cdd:COG2956   147 --LLNIYQA----TR---EWEKAIDVAERLVKLGGQTYRV-EIAQFYC---ELAQQALASSDVDRARELLKKALQADKKC 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  520 HN----LGYAHYCLGNYQEAVKYYE----QDLALAKDLHDKLsqAKAYCNLGLAFKALLNFAKAEECQK---YLLSLAQS 588
Cdd:COG2956   214 VRasiiLGRVELAKGDYQKAVEALErvleQNPEYLSEVLEML--YECYAQLGKPAEGLNFLRRAMETNTgadAELMLADL 291
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438  589 LDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLglshhvkDRRLEASAYAALGTAYRMVQ 650
Cdd:COG2956   292 IELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL-------ADAEEGRAKESLDLLRDMVG 346
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
676-705 3.65e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.65e-03
                            10        20        30
                    ....*....|....*....|....*....|
gi 568935438    676 CRAHGHLAAVYMALGKYTMAFKCYQEQLEL 705
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
236-268 3.68e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.04  E-value: 3.68e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 568935438    236 ARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 268
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
TPR COG0790
TPR repeat [Signal transduction mechanisms];
316-594 4.80e-03

TPR repeat [Signal transduction mechanisms];


Pssm-ID: 223861 [Multi-domain]  Cd Length: 292  Bit Score: 41.57  E-value: 4.80e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  316 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQ 395
Cdd:COG0790     1 PLFALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEK----AAELGDAAAL 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  396 GRAYGNMGNAYNALGMYDQAVKYHRQelqiSMEVNDRASQAsthgNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE 475
Cdd:COG0790    77 ALLGQMYGAGKGVSRDKTKAADWYRC----AAADGLAEALF----NLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAA 148
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  476 ARALsNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMeGEGKVCHNLGYAHYC-LG---NYQEAVKYYEQdlaLAKDLHD 551
Cdd:COG0790   149 LAMY-RLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-GNPDAQLLLGRMYEKgLGvprDLKKAFRWYKK---AAEQGDG 223
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 568935438  552 klsqAKAYcNLGLAFKALLNFAKAEECQK-YLLSLAQSLDNSQA 594
Cdd:COG0790   224 ----AACY-NLGLMYLNGEGVKKAAFLTAaKEEDKKQALEWLQK 262
TPR_1 pfam00515
Tetratricopeptide repeat;
276-308 4.93e-03

Tetratricopeptide repeat;


Pssm-ID: 425728 [Multi-domain]  Cd Length: 34  Bit Score: 36.63  E-value: 4.93e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 568935438   276 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
2097-2235 4.97e-03

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 41.98  E-value: 4.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2097 PILSHQRSQLSPLTVKPQPPARSSSLPKVSSPATSEvsgkdglsppgsshpspgrdTPVSPADPplFRLKYPSSPYSAHI 2176
Cdd:PTZ00449  563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK--------------------RPRSAQRP--TRPKSPKLPELLDI 620
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438 2177 SKSPRN----TSPAcSAPSPalsyssagSARSSPadapdEKVQAVHSLKmlwqsTPQPPRGPR 2235
Cdd:PTZ00449  621 PKSPKRpespKSPK-RPPPP--------QRPSSP-----ERPEGPKIIK-----SPKPPKSPK 664
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
122-295 5.00e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 227343 [Multi-domain]  Cd Length: 257  Bit Score: 41.27  E-value: 5.00e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  122 LSSAHWSLGNTEKSTGYMQQDLDVAKTLGDQtgecraHGNLGSAFFSKGNYREALTnhRHQLVLAMKLKDreaaSSALSS 201
Cdd:COG5010    72 LATALYLRGDADSSLAVLQKSAIAYPKDREL------LAAQGKNQIRNGNFGEAVS--VLRKAARLAPTD----WEAWNL 139
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  202 LGHVYTAIGDYPNALASHKQCVLLAKQskddlsEARELGNMGAVYIAMGDFENAvqchEQHLRIAKDLGSKREEARAysN 281
Cdd:COG5010   140 LGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDA----ETLLLPAYLSPAADSRVRQ--N 207
                         170
                  ....*....|....
gi 568935438  282 LGSAYHYRRNFDKA 295
Cdd:COG5010   208 LALVVGLQGDFREA 221
TPR_7 pfam13176
Tetratricopeptide repeat;
438-471 5.55e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 36.36  E-value: 5.55e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 568935438   438 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
PHA03307 PHA03307
transcriptional regulator ICP4; Provisional
1961-2233 5.92e-03

transcriptional regulator ICP4; Provisional


Pssm-ID: 223039 [Multi-domain]  Cd Length: 1352  Bit Score: 42.08  E-value: 5.92e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1961 SPDPKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVK--SQEESTPK 2038
Cdd:PHA03307  178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwGPENECPL 257
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2039 LDPQELAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAFSKPILShqrsqlspltvkpqpPAR 2118
Cdd:PHA03307  258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS---------------SSR 322
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2119 SSSLPKVSSpaTSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPLFR-----LKYPSSPYSAHISKSPRNTSPACSAPS-P 2192
Cdd:PHA03307  323 ESSSSSTSS--SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkrprpSRAPSSPAASAGRPTRRRARAAVAGRArR 400
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 568935438 2193 ALSYSSAGSARSSP----ADAPDEKVQAVHSLKML----WQSTPQPPRG 2233
Cdd:PHA03307  401 RDATGRFPAGRPRPspldAGAASGAFYARYPLLTPsgepWPGSPPPPPG 449
TPR_10 pfam13374
Tetratricopeptide repeat;
520-550 6.10e-03

Tetratricopeptide repeat;


Pssm-ID: 433156 [Multi-domain]  Cd Length: 42  Bit Score: 36.33  E-value: 6.10e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 568935438   520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 550
Cdd:pfam13374    6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
191-470 7.15e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 41.14  E-value: 7.15e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   191 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLG 270
Cdd:pfam17874   35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   271 SKREEA--RAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 347
Cdd:pfam17874  115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPD-AAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438   348 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 421
Cdd:pfam17874  194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259
                          250       260       270       280       290
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438   422 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 470
Cdd:pfam17874  260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
759-941 7.40e-03

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 227343 [Multi-domain]  Cd Length: 257  Bit Score: 40.50  E-value: 7.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  759 GRAYGNLGDCYEALGDYEEAIKYYEQYLsVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGeasnK 838
Cdd:COG5010    34 AKATGAPESSLAMRQTQGAAAALGAAVL-RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQG----K 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438  839 AQAygelgslhsQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTA-LQYHQ-LDLQIAEEtdnpt 916
Cdd:COG5010   109 NQI---------RNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEArRAYRQaLELAPNEP----- 168
                         170       180
                  ....*....|....*....|....*
gi 568935438  917 cqgRAYGNLGLTYESLGTFERAVVY 941
Cdd:COG5010   169 ---SIANNLGMSLLLRGDLEDAETL 190
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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