|
Name |
Accession |
Description |
Interval |
E-value |
| CHAT |
pfam12770 |
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that ... |
1272-1595 |
1.88e-54 |
|
CHAT domain; These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.
Pssm-ID: 432771 Cd Length: 287 Bit Score: 192.59 E-value: 1.88e-54
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1272 KPPLRALYDLLIAPMEGGLMHSSGPVgrhRQLVLVLEGELYFVPFALLKGSaSNEYLYERFTLIAVPAVRSLgphskchL 1351
Cdd:pfam12770 1 QKLARALYDLLIAPLLALLLADQQGI---RRLVIVPDGALNLLPFEALVDP-DGRYLLERYAISYAPSLRDL-------S 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1352 RKTPPTYSSSTTMAAVIGNPKLPsavmDRWLWGPMPSAEEEAFMVSELLGC---QPLVGSMATKERVMSAL-TQAECVHF 1427
Cdd:pfam12770 70 RTRRAAIQARRALQLVVGNPDFD----RALSFPPLPGAEAEAEAIAELLGAgglVVLLGEDATEEALKEALrQRYDVVHF 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1428 ATHVSWKL-----SALVLTPNTEGNpagskssfghpytipeslrvqDDASDVESISDcpplrellltaadlldLRLS-VK 1501
Cdd:pfam12770 146 ATHGVFLPnpplrSGLALAPENSRE---------------------DGLLTARELAE----------------LNLTgAE 188
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1502 LVVLSSSQEANG-RVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLNGLKASASLGEAMKVVQSSKA 1580
Cdd:pfam12770 189 LVVLSACETGLGeISGGEGVIGLARAFLLAGAPSVIASLWPVDDRATALLMKAFYQNLLQGLSKAEALRQAQLALLRGKR 268
|
330
....*....|....*....
gi 568935438 1581 ----FSHPSNWAGFTLIGS 1595
Cdd:pfam12770 269 rekpRHHPYYWAGFVLVGD 287
|
|
| COG4995 |
COG4995 |
Uncharacterized conserved protein, contains CHAT domain [Function unknown]; |
1263-1595 |
2.01e-24 |
|
Uncharacterized conserved protein, contains CHAT domain [Function unknown];
Pssm-ID: 227328 [Multi-domain] Cd Length: 420 Bit Score: 108.63 E-value: 2.01e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1263 LPRRQNSLAKPPLRALYDLLIAPMEGGLMHSsgpvgRHRQLVLVLEGELYFVPFALLKgsASNEYLYERFTLIAVPAvrs 1342
Cdd:COG4995 130 VAPRTPQELKASSQQLYDWLISPIESLLKAL-----EIKTLIFVLDGALRNVPMAALY--DGKQYLIEKYAIATSPG--- 199
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1343 lgphskchLRKTPPTYSSSTTMAAVIGNPKLPSAVmDRWLWGPMPSAEEEAFMVSELLGCQPLVGSMATK---ERVMSAL 1419
Cdd:COG4995 200 --------LQLTDSKPLRQQNLKVLAAGLSEPSGP-ARTGFDALPFAALEVETIAAIFPPQKLLLNQAFTaanLAQEIDT 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1420 TQAECVHFATHVSwklsalvltpNTEGNPAGSKSSFGhpytipeslrvqDDASDVESISDCppLRELLLTAadlldlrLS 1499
Cdd:COG4995 271 KPYSVVHLATHGQ----------FSSGNPEDSFLLLW------------DGPINVTELDIL--LRNRNNNL-------LP 319
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1500 VKLVVLSSSQEANGRVTADGLVALTRAFLAAGAQCVLVALWPVPVAASKMFVHAFYSSLLN-GLKASASLGEAM-KVVQS 1577
Cdd:COG4995 320 VELVVLSACQTALGEGDGRAYLGLAGGAVYAGAKSALASLWSVDDESTAALMTEFYRKLQQaQLTKAEALRQAQlKLLEG 399
|
330
....*....|....*...
gi 568935438 1578 SKAFSHPSNWAGFTLIGS 1595
Cdd:COG4995 400 NPEFSHPYYWAAFTLIGN 417
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
9-819 |
2.99e-19 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 95.15 E-value: 2.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 9 KAYFRQGVALQYLGRHADALAAFASGLAQDPKSLQLLVGMVEAAMKSPMRDTLEPTYQQLQKmKLDKSPFvVVSVVGQEL 88
Cdd:TIGR02917 194 DALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLK-KAPNSPL-AHYLKALVD 271
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 89 LTAGHHGASVVVLEAALKIGTCSLKlrgSVFSAlSSAHWSLGNTEKSTGYMQQ------DLDVAKTLgdqtgecrahgnL 162
Cdd:TIGR02917 272 FQKKNYEDARETLQDALKSAPEYLP---ALLLA-GASEYQLGNLEQAYQYLNQilkyapNSHQARRL------------L 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 163 GSAFFSKGNYREALTnhrhQLVLAMKLKDREAAssALSSLGHVYTAIGDYPNALAshkqcvLLAKQSKDDLSEARELGNM 242
Cdd:TIGR02917 336 ASIQLRLGRVDEAIA----TLSPALGLDPDDPA--ALSLLGEAYLALGDFEKAAE------YLAKATELDPENAAARTQL 403
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 243 GAVYIAMGDFENAVQCHEQHLRIAKDLGskreeaRAYSNLGSAYHYRRNFDKAMSyhncvleLAQELMEK------PIEM 316
Cdd:TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPELG------RADLLLILSYLRSGQFDKALA-------AAKKLEKKqpdnasLHNL 470
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 317 RAYAGLGHaarcmQDLERAKQYHEQQLGIAEDlkdraaEGRASSNLGIIHQMKGD-------YDTALKLHKTHLCIAQEL 389
Cdd:TIGR02917 471 LGAIYLGK-----GDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNpddaiqrFEKVLTIDPKNLRAILAL 539
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 390 SDYAAQgraygnMGNAYNALGMYDQAVKYHRQELQISMevndrasqasthgNLAVAYQALGAHDRALQhyqnhlnIAREL 469
Cdd:TIGR02917 540 AGLYLR------TGNEEEAVAWLEKAAELNPQEIEPAL-------------ALAQYYLGKGQLKKALA-------ILNEA 593
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 470 RDIQ-SEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:TIGR02917 594 ADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELKPD 667
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 549 lHDKLSQAKAycnlglafkallNFAKAEECQKYLLSLAQSLDNSQAKfRALGN--LGDIFICKKDINGAIKFYEQQLgls 626
Cdd:TIGR02917 668 -NTEAQIGLA------------QLLLAAKRTESAKKIAKSLQKQHPK-AALGFelEGDLYLRQKDYPAAIQAYRKAL--- 730
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 627 hhvkdrRLEASAYAA--LGTAYRMVQKYDKALgyhtQELEVYqeLSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLE 704
Cdd:TIGR02917 731 ------KRAPSSQNAikLHRALLASGNTAEAV----KTLEAW--LKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVK 798
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 705 lgrklKEPSlEAQVYGNMGITKMNMNVMEdAIGYFEQQlamLQQLSGNESVLDrgraygNLGDCYEALGDYEEAIKYYEQ 784
Cdd:TIGR02917 799 -----KAPD-NAVVLNNLAWLYLELKDPR-ALEYAERA---LKLAPNIPAILD------TLGWLLVEKGEADRALPLLRK 862
|
810 820 830
....*....|....*....|....*....|....*.
gi 568935438 785 YLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQAL 819
Cdd:TIGR02917 863 AVNIAPEAAAIRyHLALALLATGRKAEARKELDKLL 898
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
325-599 |
3.90e-19 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 90.29 E-value: 3.90e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 325 AARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAYGNMGN 404
Cdd:COG0457 28 AGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEK----ALELELLPNLAEALLNLGL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 405 AYNALGMYDQAVKYHRQELQIsmevnDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIqseARALSNLGN 484
Cdd:COG0457 104 LLEALGKYEEALELLEKALAL-----DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNEL---AEALLALGA 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 485 FHCSRGEYVQAAPYYEQYLRLAPDLqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKL-SQAKAYCNLG 563
Cdd:COG0457 176 LLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALyNLALLLLELG 250
|
250 260 270
....*....|....*....|....*....|....*.
gi 568935438 564 LAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFRAL 599
Cdd:COG0457 251 RYEEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
576-877 |
1.92e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 88.36 E-value: 1.92e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 576 EECQKYLLSLAQSLDNSQAKFRALGNLgdIFICKKDINGAIKFYEQQLGLShhvkDRRLEASAYAALGTAYRMVQKYDKA 655
Cdd:COG0457 5 LLALAILLEALAKLLAEALALLEAGLA--LLELLGELAEALELLEEALELL----PNSDLAGLLLLLALALLKLGRLEEA 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 656 LgyhtQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKlkepSLEAQVYGNMGItKMNMNVMEDA 735
Cdd:COG0457 79 L----ELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD----PDLAEALLALGA-LYELGDYEEA 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 736 IGYFEQQLAMlqqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNrmqdqAKAYRGLGNGHRATGSL 815
Cdd:COG0457 150 LELYEKALEL------DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD-----AEALLNLGLLYLKLGKY 218
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438 816 QQALVCFEKRLVVAHelgeasNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRAL 877
Cdd:COG0457 219 EEALEYYEKALELDP------DNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGL 274
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
166-1032 |
5.46e-18 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 91.30 E-value: 5.46e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 166 FFSKGNYREALTnhrhQLVLAMKLKDREAASSALssLGHVYTAIGDYPNALASHKQCVLL---AKQSKDDLSEArelgnm 242
Cdd:TIGR02917 32 YLQKNKYKAAII----QLKNALQKDPNDAEARFL--LGKIYLALGDYAAAEKELRKALSLgypKNQVLPLLARA------ 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 243 gavYIAMGDFENAVQCHEqhlriAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYhncvLELAQELMEKpiemRAYAGL 322
Cdd:TIGR02917 100 ---YLLQGKFQQVLDELP-----GKTLLDDEGAAELLALRGLAYLGLGQLELAQKS----YEQALAIDPR----SLYAKL 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 323 GHAarcmQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQGRAygNM 402
Cdd:TIGR02917 164 GLA----QLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRK----AIALRPNNIAVLL--AL 233
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 403 GNAYNALGMYDQAVKYHRQELQISmevndrASQASTHGNLA-VAYQAlGAHDRALQHYQNHLNIARElrdiQSEARALSN 481
Cdd:TIGR02917 234 ATILIEAGEFEEAEKHADALLKKA------PNSPLAHYLKAlVDFQK-KNYEDARETLQDALKSAPE----YLPALLLAG 302
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 482 LGNFHcsRGEYVQAAPYYEQYLRLAPdlqdmegegkvchNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDKLSQ-AKAYC 560
Cdd:TIGR02917 303 ASEYQ--LGNLEQAYQYLNQILKYAP-------------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDdPAALS 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 561 NLGLAFKALLNFAKAEEcqkyLLSLAQSLDNSQAKFRAlgNLGDIFICKKDINGAIKFYEQQLGLSHHVKDRRLeasaya 640
Cdd:TIGR02917 368 LLGEAYLALGDFEKAAE----YLAKATELDPENAAART--QLGISKLSQGDPSEAIADLETAAQLDPELGRADL------ 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 641 ALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALGKYTMAfkcyQEQLELGRKLKEPSLEAQVY- 719
Cdd:TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQ------PDNASLHNLLGAIYLGKGDLAKA----REAFEKALSIEPDFFPAAANl 505
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 720 GNMGITKMNmnvMEDAIGYFE-------------QQLAMLQQLSGNES--VLDRGRAYGNLGDCYE---ALGDYEEAIKY 781
Cdd:TIGR02917 506 ARIDIQEGN---PDDAIQRFEkvltidpknlraiLALAGLYLRTGNEEeaVAWLEKAAELNPQEIEpalALAQYYLGKGQ 582
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 782 YEQYLSVAQSLNRMQ-DQAKAYRGLGNGHRATGSLQQALVCFEKRlvvaheLGEASNKAQAYGELGSLHSQLGNYEQAIS 860
Cdd:TIGR02917 583 LKKALAILNEAADAApDSPEAWLMLGRAQLAAGDLNKAVSSFKKL------LALQPDSALALLLLADAYAVMKNYAKAIT 656
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 861 CLERQLNIARDMkdraleSDAACGLGGVYQQMGEYDTALQ-YHQLDLQIAEEtdnptcqgrAYGN--LGLTYESLGTFER 937
Cdd:TIGR02917 657 SLKRALELKPDN------TEAQIGLAQLLLAAKRTESAKKiAKSLQKQHPKA---------ALGFelEGDLYLRQKDYPA 721
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 938 AVVYQEQHLSIAAQmNDLVAKtvsyssLGRTHHALQNYSQAVMylqeglRLAEQLGRREDEAKIRHGLglslwasGNLEE 1017
Cdd:TIGR02917 722 AIQAYRKALKRAPS-SQNAIK------LHRALLASGNTAEAVK------TLEAWLKTHPNDAVLRTAL-------AELYL 781
|
890
....*....|....*
gi 568935438 1018 AQHQLYRASALFETI 1032
Cdd:TIGR02917 782 AQKDYDKAIKHYQTV 796
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
682-955 |
5.57e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 86.82 E-value: 5.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 682 LAAVYMALGKYTMAFKCYQEQLELGRKlkepSLEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLsgnesvlDRGRA 761
Cdd:COG0457 29 GLALLELLGELAEALELLEEALELLPN----SDLAGLLLLLALALLKLGRLEEALELLEKALELELLP-------NLAEA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 762 YGNLGDCYEALGDYEEAIKYYEQYLsvaqSLNRMQDQAKAYRGLGNgHRATGSLQQALVCFEKRLVVAHELgeaSNKAQA 841
Cdd:COG0457 98 LLNLGLLLEALGKYEEALELLEKAL----ALDPDPDLAEALLALGA-LYELGDYEEALELYEKALELDPEL---NELAEA 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 842 YGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESdaacgLGGVYQQMGEYDTALQYHQLDLQIAEETDNptcqgrA 921
Cdd:COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN-----LGLLYLKLGKYEEALEYYEKALELDPDNAE------A 238
|
250 260 270
....*....|....*....|....*....|....
gi 568935438 922 YGNLGLTYESLGTFERAVVYQEQHLSIAAQMNDL 955
Cdd:COG0457 239 LYNLALLLLELGRYEEALEALEKALELDPDLYNL 272
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
529-802 |
9.10e-17 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 83.36 E-value: 9.10e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 529 LGNYQEAVKYYEQDLALAKDLHDklsqAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQSLDNSQAKFralgNLGDIFIC 608
Cdd:COG0457 36 LGELAEALELLEEALELLPNSDL----AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALL----NLGLLLEA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 609 KKDINGAIKFYEQQLGLSHHvkdrRLEASAYAALGTAYRMvQKYDKALGYHTQELEVYQELSDLPGECRAhghLAAVYMA 688
Cdd:COG0457 108 LGKYEEALELLEKALALDPD----PDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEALLA---LGALLEA 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 689 LGKYTMAFKCYQEQLELgrklkEPSLEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLsgNESVLDRGRAYGNLGDC 768
Cdd:COG0457 180 LGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDN--AEALYNLALLLLELGRY 252
|
250 260 270
....*....|....*....|....*....|....
gi 568935438 769 YEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAY 802
Cdd:COG0457 253 EEALEALEKALELDPDLYNLGLALLLLLAEALEL 286
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
186-869 |
4.06e-15 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 81.67 E-value: 4.06e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 186 AMKLKDR-----EAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSearelgNMGAVYIAMGDFENAvqchE 260
Cdd:TIGR02917 178 ARALIDEvltadPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLL------ALATILIEAGEFEEA----E 247
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 261 QHLRIAKdlgskreeARAYSNLGSAY-----HYRR-NFDKAMSYHNCVLELAQELMEkpieMRAYAGLGHAARcmQDLER 334
Cdd:TIGR02917 248 KHADALL--------KKAPNSPLAHYlkalvDFQKkNYEDARETLQDALKSAPEYLP----ALLLAGASEYQL--GNLEQ 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 335 AKQYHEQQLGIAEDLkDRAAEGRASSNLgiihqMKGDYDTALklhkTHLCIAQELSDYAAQgrAYGNMGNAYNALGMYDQ 414
Cdd:TIGR02917 314 AYQYLNQILKYAPNS-HQARRLLASIQL-----RLGRVDEAI----ATLSPALGLDPDDPA--ALSLLGEAYLALGDFEK 381
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 415 AVKY-------------HRQELQISMEVNDRASQASTHGNLAVAYQALGAHDR---ALQHYQNH-----LNIARELRDIQ 473
Cdd:TIGR02917 382 AAEYlakateldpenaaARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADlllILSYLRSGqfdkaLAAAKKLEKKQ 461
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 474 SEARALSNL-GNFHCSRGEYVQAAPYYEQYLRLAPDlqdmegEGKVCHNLGYAHYCLGNYQEAVKYYEQDLALA---KDL 549
Cdd:TIGR02917 462 PDNASLHNLlGAIYLGKGDLAKAREAFEKALSIEPD------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDpknLRA 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 550 HDKLSQAKAYCN--------LGLAFKA-------LLNFAKAEECQKYL---LSLAQS-LDNSQAKFRALGNLGDIFICKK 610
Cdd:TIGR02917 536 ILALAGLYLRTGneeeavawLEKAAELnpqeiepALALAQYYLGKGQLkkaLAILNEaADAAPDSPEAWLMLGRAQLAAG 615
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 611 DINGAIKFYEQQLGLSHHvkdrrlEASAYAALGTAYRMVQKYDKALGYHTQELEVYqelsdlPGECRAHGHLAAVYMALG 690
Cdd:TIGR02917 616 DLNKAVSSFKKLLALQPD------SALALLLLADAYAVMKNYAKAITSLKRALELK------PDNTEAQIGLAQLLLAAK 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 691 KYTMAFKCYQEQLELGRKLKE-PSLEAQVYgnmgitkMNMNVMEDAIGYFEQ------------QLAMLQQLSGN----- 752
Cdd:TIGR02917 684 RTESAKKIAKSLQKQHPKAALgFELEGDLY-------LRQKDYPAAIQAYRKalkrapssqnaiKLHRALLASGNtaeav 756
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 753 ---ESVLDR----GRAYGNLGDCYEALGDYEEAIKYYEQYLSVAqslnrmQDQAKAYRGLgnghratgslqqALVCFEKR 825
Cdd:TIGR02917 757 ktlEAWLKThpndAVLRTALAELYLAQKDYDKAIKHYQTVVKKA------PDNAVVLNNL------------AWLYLELK 818
|
730 740 750 760
....*....|....*....|....*....|....*....|....*....
gi 568935438 826 LVVAHELGE-----ASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIA 869
Cdd:TIGR02917 819 DPRALEYAEralklAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
261-575 |
2.17e-14 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 76.04 E-value: 2.17e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 261 QHLRIAKDLGSKREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpiemRAYAGLGHAARCMQDLERAKQYHE 340
Cdd:COG0457 8 LAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLA----GLLLLLALALLKLGRLEEALELLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 341 QQLGIAEDLKDraaeGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQgraygNMGNAYNALGMYDQAVKYHR 420
Cdd:COG0457 84 KALELELLPNL----AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL-----LALGALYELGDYEEALELYE 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 421 QELQISMEVNDRASQASthgNLAVAYQALGAHDRALQHYQNHLNIARELrdiqsEARALSNLGNFHCSRGEYVQAAPYYE 500
Cdd:COG0457 155 KALELDPELNELAEALL---ALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYE 226
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 501 QYLRLAPDLQdmegegKVCHNLGYAHYCLGNYQEAVKYYEQDLALAKDLhdklsQAKAYCNLGLAFKALLNFAKA 575
Cdd:COG0457 227 KALELDPDNA------EALYNLALLLLELGRYEEALEALEKALELDPDL-----YNLGLALLLLLAEALELLEKA 290
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
716-791 |
1.40e-10 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 59.32 E-value: 1.40e-10
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438 716 AQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESvLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDH-PLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
727-1030 |
2.46e-10 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 64.64 E-value: 2.46e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 727 MNMNVMEDAIGYFEQQLAMLQqlsgNESVLDRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLG 806
Cdd:pfam17874 12 ISKGDAERALELAEQALALLP----EDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 807 NGHRATGSLQQALVCFEKRLVVAHELGEASNKAQ--AYGELGSLHSQLGNYEQAISCLERQLNIARDMK-DRALESDAAc 883
Cdd:pfam17874 88 EILRAQGRLHQALETYQQALQLARDHGLQHLPLHgfLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEpDAAVDAYVL- 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 884 gLGGVYQQMGEYDTALQYhqldLQIAEETDNPT------------CQGRAY---GNLGLTYESLGTFERAV----VYQEQ 944
Cdd:pfam17874 167 -LARIALAQGELEEALTL----LRRAELLARQSffhvdwlanaerVRVRLWlarGDLRAAVRWLRAAEPPSdadnHFLER 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 945 HLSIAAqmndlvaktvsysslgRTHHALQNYSQAVMYLQEGLRLAEQLGRREDEAKIRHGLGLSLWASGNLEEAQHQLYR 1024
Cdd:pfam17874 242 ELRNLA----------------RVLLALGRFDDALSLLERLQNLAEQLGRVRSLIENLILQALALLALGRPDEALQALLD 305
|
....*.
gi 568935438 1025 ASALFE 1030
Cdd:pfam17874 306 ALSLAE 311
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
161-393 |
4.05e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 63.33 E-value: 4.05e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 161 NLGSAFFSKGNYREALTNHRHQLVLAMKLKDreaaSSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARElg 240
Cdd:COG0457 64 LLALALLKLGRLEEALELLEKALELELLPNL----AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL-- 137
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 241 nmgAVYIAMGDFENAVQCHEQHLRIAKDLgskREEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpiemrAYA 320
Cdd:COG0457 138 ---GALYELGDYEEALELYEKALELDPEL---NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE-----ALL 206
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438 321 GLGHAARCMQDLERAKQYHEQQLGIAEDLKDraaegrASSNLGIIHQMKGDYDTALKLHKTHLCIAQELSDYA 393
Cdd:COG0457 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAE------ALYNLALLLLELGRYEEALEALEKALELDPDLYNLG 273
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
138-355 |
5.42e-10 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 223533 [Multi-domain] Cd Length: 291 Bit Score: 62.94 E-value: 5.42e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 138 YMQQDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALSSL--GHVYTAIGDYPNA 215
Cdd:COG0457 70 LKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALlaLGALYELGDYEEA 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 216 LASHKQcvlLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDlgskrEEARAYSNLGSAYHYRRNFDKA 295
Cdd:COG0457 150 LELYEK---ALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD-----DDAEALLNLGLLYLKLGKYEEA 221
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438 296 MSYHNCVLELAQELMEKPIEM-RAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAE 355
Cdd:COG0457 222 LEYYEKALELDPDNAEALYNLaLLLLELGRYEEALEALEKALELDPDLYNLGLALLLLLAE 282
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
397-468 |
1.71e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 56.24 E-value: 1.71e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438 397 RAYGNMGNAYNALGMYDQAVKYHRQELQISMEV--NDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARE 468
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
839-911 |
2.73e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 55.47 E-value: 2.73e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD--MKDRALESDAACGLGGVYQQMGEYDTALQYHQLDLQIAEE 911
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
239-308 |
5.69e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.70 E-value: 5.69e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438 239 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSKR--EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:pfam13424 6 LNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
434-508 |
6.65e-09 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 54.32 E-value: 6.65e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935438 434 SQASTHGNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE--ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
195-268 |
2.21e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 53.16 E-value: 2.21e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438 195 ASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQS--KDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 268
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
357-425 |
8.97e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.23 E-value: 8.97e-08
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438 357 RASSNLGIIHQMKGDYDTALKLHKTHLCIAQEL--SDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
757-871 |
9.23e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 51.23 E-value: 9.23e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 757 DRGRAYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLnrmqdqakayrgLGNGHRATgslqqalvcfekrlvvahelgeas 836
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRL------------LGPDHPLT------------------------ 44
|
90 100 110
....*....|....*....|....*....|....*
gi 568935438 837 nkAQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13424 45 --ATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
398-508 |
1.10e-06 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 50.83 E-value: 1.10e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASqasTHGNLAVAYQALGAHDRALQHYQNHLNIARELrdiqseAR 477
Cdd:PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSY---ILYNMGIIYASNGEHDKALEYYHQALELNPKQ------PS 107
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 568935438 478 ALSNLGNFHCSRGE--------------YVQAAPYYEQYLRLAPD 508
Cdd:PRK02603 108 ALNNIAVIYHKRGEkaeeagdqdeaealFDKAAEYWKQAIRLAPN 152
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
881-951 |
1.26e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 48.15 E-value: 1.26e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438 881 AACGLGGVYQQMGEYDTALQYHQLDLQIAEETDNPT--CQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 951
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDhpLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PHA03377 |
PHA03377 |
EBNA-3C; Provisional |
1931-2315 |
1.63e-06 |
|
EBNA-3C; Provisional
Pssm-ID: 177614 [Multi-domain] Cd Length: 1000 Bit Score: 53.52 E-value: 1.63e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1931 ASKEEEEYEGFSIISMEPLATYQ--GEGKTRFSPDPKQPCVKAPGgvrlsvsskgSVSTPNSPVKMTLIPSPNSPFQKVG 2008
Cdd:PHA03377 519 TTEEEESVTQPAKPHRKVQDGFQrsGRRQKRATPPKVSPSDRGPP----------KASPPVMAPPSTGPRVMATPSTGPR 588
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2009 KLASSDTGESDQSSTETDSTVKSQEESTPKldpqELAQRILEETKSHLLAVER-LQRSGGPagpdredsvvAPSSTTVFR 2087
Cdd:PHA03377 589 DMAPPSTGPRQQAKCKDGPPASGPHEKQPP----SSAPRDMAPSVVRMFLRERlLEQSTGP----------KPKSFWEMR 654
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2088 AS-ETSAFSKPILSHQRSQLSPLTVKPQPPARSSSLPKVSS--PATSEVSGKDGLSPPG--SSHPSPGRDTPVSPAD--- 2159
Cdd:PHA03377 655 AGrDGSGIQQEPSSRRQPATQSTPPRPSWLPSVFVLPSVDAgrAQPSEESHLSSMSPTQpiSHEEQPRYEDPDDPLDlsl 734
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2160 -PPLFRLKYPSSPYSAHisKSPrntsPACSAPSPalsyssaGSARSSPADAPDEKVQavhslkmlwqsTPQPPRGPRKTC 2238
Cdd:PHA03377 735 hPDQAPPPSHQAPYSGH--EEP----QAQQAPYP-------GYWEPRPPQAPYLGYQ-----------EPQAQGVQVSSY 790
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2239 RGAPGTLTSK------RDVLSLLNLSPRHGKEEGGADrlelkelsvQRHDEVPPK-VPTNGHWCTDTATLTTAggRSTTA 2311
Cdd:PHA03377 791 PGYAGPWGLRaqhpryRHSWAYWSQYPGHGHPQGPWA---------PRPPHLPPQwDGSAGHGQDQVSQFPHL--QSETG 859
|
....
gi 568935438 2312 APRP 2315
Cdd:PHA03377 860 PPRL 863
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
961-1030 |
1.72e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.77 E-value: 1.72e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438 961 SYSSLGRTHHALQNYSQAVMYLQEGLRLAEQL--GRREDEAKIRHGLGLSLWASGNLEEAQHQLYRASALFE 1030
Cdd:pfam13424 5 ALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
519-552 |
1.91e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 46.38 E-value: 1.91e-06
10 20 30
....*....|....*....|....*....|....
gi 568935438 519 CHNLGYAHYCLGNYQEAVKYYEQDLALAKDLHDK 552
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
274-348 |
2.50e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.00 E-value: 2.50e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568935438 274 EEARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELM--EKPIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAED 348
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
1913-2235 |
2.70e-06 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 53.00 E-value: 2.70e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1913 PQRATLPRRQTSPqARRGASKEEEEyegfsIISMEPLATYQGEGKTRFSPDPKQPCVKAPGGVRLSVSSKGSVSTPN--S 1990
Cdd:pfam05109 449 PSSTHVPTNLTAP-ASTGPTVSTAD-----VTSPTPAGTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNatS 522
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1991 PVKMTLIPSPNSPFQKVGKLA--SSDTGESDQSSTETDS-TVKSQEESTPKLDPQELAQRILEETKShllAVERLQRSGG 2067
Cdd:pfam05109 523 PTPAVTTPTPNATSPTLGKTSptSAVTTPTPNATSPTPAvTTPTPNATIPTLGKTSPTSAVTTPTPN---ATSPTVGETS 599
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2068 PAGPDREDSVVAPSSTTVFRA---SETSAFSKPILSHQRSQLSPLTVKPqpparsSSLPKVSSPATSEVSGKDGLSPPGS 2144
Cdd:pfam05109 600 PQANTTNHTLGGTSSTPVVTSppkNATSAVTTGQHNITSSSTSSMSLRP------SSISETLSPSTSDNSTSHMPLLTSA 673
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2145 SHPSPGRDTPVSPAdpplfrlkypsSPYSAHISKSprntSPacsAPSPALSYSSAGSARSSPADAPDEkVQAVHSLKMLW 2224
Cdd:pfam05109 674 HPTGGENITQVTPA-----------STSTHHVSTS----SP---APRPGTTSQASGPGNSSTSTKPGE-VNVTKGTPPKN 734
|
330
....*....|.
gi 568935438 2225 QSTPQPPRGPR 2235
Cdd:pfam05109 735 ATSPQAPSGQK 745
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
841-876 |
2.71e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.61 E-value: 2.71e-06
10 20 30
....*....|....*....|....*....|....*.
gi 568935438 841 AYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRA 876
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
520-588 |
2.73e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 47.00 E-value: 2.73e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438 520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH--DKLSQAKAYCNLGLAFKALLNFAKAEECQKYLLSLAQS 588
Cdd:pfam13424 7 NNLAAVLRRLGRYDEALELLEKALEIARRLLgpDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PilF |
COG3063 |
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
402-545 |
3.05e-06 |
|
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 50.89 E-value: 3.05e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 402 MGNAYNALGM-YDQAVKYHRQELQISMEVNDRASQASTHGNLAVAYQALGAHDRALQHYQNHLNIARElrdiqsEARALS 480
Cdd:COG3063 34 AAKARLQLALgYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN------NGDVLN 107
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 481 NLGNFHCSRGEYVQAapyyEQYLRLAPDLQDMEGEGKVCHNLGYAHYCLGNYQEAVKYYEQDLAL 545
Cdd:COG3063 108 NYGAFLCAQGRPEEA----MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1915-2250 |
3.34e-06 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 52.87 E-value: 3.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1915 RATLPRRQTSPQARRGASKEEEEYEGFSII---SMEPLATYQGEGKTRFSPDPKQPCVKAPGGvrlSVSSKGSVSTPNSP 1991
Cdd:PHA03307 50 LAAVTVVAGAAACDRFEPPTGPPPGPGTEApanESRSTPTWSLSTLAPASPAREGSPTPPGPS---SPDPPPPTPPPASP 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VkmtliPSPNSPFQKVGKLASSDTGESDQSSTETDStVKSQEESTPKLDPQ-ELAQRILEET--------KSHLLAVERL 2062
Cdd:PHA03307 127 P-----PSPAPDLSEMLRPVGSPGPPPAASPPAAGA-SPAAVASDAASSRQaALPLSSPEETarapssppAEPPPSTPPA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2063 QRSGGPAGPDREDSVVAPSST------TVFRASETSAFSKPILShQRSQLSPLTVKPQPPARSSSLPKVS-SPATSEVSG 2135
Cdd:PHA03307 201 AASPRPPRRSSPISASASSPApapgrsAADDAGASSSDSSSSES-SGCGWGPENECPLPRPAPITLPTRIwEASGWNGPS 279
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2136 KDGLSPPGSSHPSPGRDTPVS------PADPPLFRLKYPSSPYSAHISKSPR--NTSPACSAPSPALSYSSAGSARSSPA 2207
Cdd:PHA03307 280 SRPGPASSSSSPRERSPSPSPsspgsgPAPSSPRASSSSSSSRESSSSSTSSssESSRGAAVSPGPSPSRSPSPSRPPPP 359
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 568935438 2208 DAPDEKVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRD 2250
Cdd:PHA03307 360 ADPSSPRKRPRPSRAPSSPAASAGRPTRRRARAAVAGRARRRD 402
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
761-793 |
3.75e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 45.22 E-value: 3.75e-06
10 20 30
....*....|....*....|....*....|...
gi 568935438 761 AYGNLGDCYEALGDYEEAIKYYEQYLSVAQSLN 793
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPY 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
760-791 |
4.44e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 45.11 E-value: 4.44e-06
10 20 30
....*....|....*....|....*....|..
gi 568935438 760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
316-388 |
6.65e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.84 E-value: 6.65e-06
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 316 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDL--KDRAAEGRASSNLGIIHQMKGDYDTALKLHKTHLCIAQE 388
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
760-791 |
8.31e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 44.31 E-value: 8.31e-06
10 20 30
....*....|....*....|....*....|..
gi 568935438 760 RAYGNLGDCYEALGDYEEAIKYYEQYLSVAQS 791
Cdd:pfam13181 2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
920-991 |
1.04e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.46 E-value: 1.04e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438 920 RAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ--MNDLVAKTVSYSSLGRTHHALQNYSQAVMYLQEGLRLAEQ 991
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRllGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
156-228 |
1.61e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 45.07 E-value: 1.61e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 156 CRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKL--KDREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQ 228
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
760-784 |
1.79e-05 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 43.20 E-value: 1.79e-05
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
636-708 |
1.97e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 44.69 E-value: 1.97e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 636 ASAYAALGTAYRMVQKYDKALGYHTQELEVYQEL--SDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRK 708
Cdd:pfam13424 3 ATALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1948-2247 |
2.58e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.94 E-value: 2.58e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1948 PLATYQGEGKTRFSPDPKQPCVKA----PGGVRLSVSSKGSVSTPNSPvKMTLIPSPNSPfqkvgKLASSDTGESDQSST 2023
Cdd:PHA03247 2561 PAAPDRSVPPPRPAPRPSEPAVTSrarrPDAPPQSARPRAPVDDRGDP-RGPAPPSPLPP-----DTHAPDPPPPSPSPA 2634
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2024 ETDSTVKSQEESTPKLDPQELAqrileetkshllAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAfsKPILSHQR 2103
Cdd:PHA03247 2635 ANEPDPHPPPTVPPPERPRDDP------------APGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTV--GSLTSLAD 2700
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2104 SQLSPLTVKPQPPARSSSLPKVSSPATSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPlfRLKYPSSPYSAHISKSPRNT 2183
Cdd:PHA03247 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPA--RPPTTAGPPAPAPPAAPAAG 2778
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568935438 2184 SPACSAPSPALSYSSAGSARSSPADAPDEKVQAVHSLKML-WQSTPQPPRGPRKTCRGAPGTLTS 2247
Cdd:PHA03247 2779 PPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALpPAASPAGPLPPPTSAQPTAPPPPP 2843
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
478-513 |
3.25e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.53 E-value: 3.25e-05
10 20 30
....*....|....*....|....*....|....*.
gi 568935438 478 ALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDME 513
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| PHA03247 |
PHA03247 |
large tegument protein UL36; Provisional |
1913-2318 |
3.64e-05 |
|
large tegument protein UL36; Provisional
Pssm-ID: 223021 [Multi-domain] Cd Length: 3151 Bit Score: 49.55 E-value: 3.64e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1913 PQRATLPRRQTSPQARRGASKEEEEYEGFSI-ISMEPLATYQGEGKTRFSPDPKqPCVKAPGGVRLSVSSKGSVSTPNSP 1991
Cdd:PHA03247 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAArPTVGSLTSLADPPPPPPTPEPA-PHALVSATPLPPGPAAARQASPALP 2736
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VKMTLIPSPNSPfqkvgklaSSDTGESDQSSTETDSTVKSqeeSTPKLDPQELAQRILEETKSHLLAVerlQRSGGPAGP 2071
Cdd:PHA03247 2737 AAPAPPAVPAGP--------ATPGGPARPARPPTTAGPPA---PAPPAAPAAGPPRRLTRPAVASLSE---SRESLPSPW 2802
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2072 DRED--SVVAPSSTTVFRASETSAFSKPilshqrsqlsPLTVKPQPPARSSSLPKVSSPATSEVSgkDGLSPPGSSHPSP 2149
Cdd:PHA03247 2803 DPADppAAVLAPAAALPPAASPAGPLPP----------PTSAQPTAPPPPPGPPPPSLPLGGSVA--PGGDVRRRPPSRS 2870
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2150 GRDTPVSPADPPLFRLKYPSSPYSAHISKSPRNTSPACSAPSPAlsyssagsarSSPADAPDEKVQAvhslkmlwQSTPQ 2229
Cdd:PHA03247 2871 PAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAP----------PPPQPQPQPPPPP--------QPQPP 2932
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2230 PPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGKEEGG---ADRLELKELSVQRHDEVPPKVPTNGHWCTDTATLTTAGG 2306
Cdd:PHA03247 2933 PPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGrvaVPRFRVPQPAPSREAPASSTPPLTGHSLSRVSSWASSLA 3012
|
410
....*....|..
gi 568935438 2307 RSTTAAPRPLRL 2318
Cdd:PHA03247 3013 LHEETDPPPVSL 3024
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
597-668 |
4.36e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 43.53 E-value: 4.36e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438 597 RALGNLGDIFICKKDINGAIKFYEQQLGLSHHV--KDRRLEASAYAALGTAYRMVQKYDKALGYHTQELEVYQE 668
Cdd:pfam13424 4 TALNNLAAVLRRLGRYDEALELLEKALEIARRLlgPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
239-272 |
5.57e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 42.14 E-value: 5.57e-05
10 20 30
....*....|....*....|....*....|....
gi 568935438 239 LGNMGAVYIAMGDFENAVQCHEQHLRIAKDLGSK 272
Cdd:pfam13176 2 LLNLGRIYRKLGDYDEAISLYEQALALAKDPYDR 35
|
|
| PHA03378 |
PHA03378 |
EBNA-3B; Provisional |
1992-2315 |
6.57e-05 |
|
EBNA-3B; Provisional
Pssm-ID: 223065 [Multi-domain] Cd Length: 991 Bit Score: 48.52 E-value: 6.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1992 VKMTLIP-SPNSPfqKVGKLASSD-TGESDQSSTETDST--VKSQEESTPKLDPQELaQRILEETKSHLlaverlqRSGG 2067
Cdd:PHA03378 520 VMATLLPpSPPQP--RAGRRAPCVyTEDLDIESDEPASTepVHDQLLPAPGLGPLQI-QPLTSPTTSQL-------ASSA 589
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2068 PAGPDREDSVVAPSS-----TTVFRASETSA----------------------FSKPILS--HQRSQLSPLTVK------ 2112
Cdd:PHA03378 590 PSYAQTPWPVPHPSQtpeppTTQSHIPETSAprqwpmplrpipmrplrmqpitFNVLVFPtpHQPPQVEITPYKptwtqi 669
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2113 ------PQPPARSSSLPKVSSPATSEVSGKdglsppgsshpspgRDTPVSPADPPLFRLKYPSSPYSAH--ISKSPRNTS 2184
Cdd:PHA03378 670 ghipyqPSPTGANTMLPIQWAPGTMQPPPR--------------APTPMRPPAAPPGRAQRPAAATGRArpPAAAPGRAR 735
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2185 PACSAPSPALSYSSAGSARSSPADAPDE-KVQAVHSLKMLWQSTPQPPRGPRKTCRGAPGTLTSKRDVLSLLNLSPRHGK 2263
Cdd:PHA03378 736 PPAAAPGRARPPAAAPGRARPPAAAPGRaRPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQAGPTSMQLMPRAAP 815
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|..
gi 568935438 2264 EEGGADRLELKELSVQRHDEVPPkvptnghwctdTATLTTAGGRSTTAAPRP 2315
Cdd:PHA03378 816 GQQGPTKQILRQLLTGGVKRGRP-----------SLKKPAALERQAAAGPTP 856
|
|
| Atrophin-1 |
pfam03154 |
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian ... |
1945-2236 |
1.36e-04 |
|
Atrophin-1 family; Atrophin-1 is the protein product of the dentatorubral-pallidoluysian atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive neurodegenerative disorder. It is caused by the expansion of a CAG repeat in the DRPLA gene on chromosome 12p. This results in an extended polyglutamine region in atrophin-1, that is thought to confer toxicity to the protein, possibly through altering its interactions with other proteins. The expansion of a CAG repeat is also the underlying defect in six other neurodegenerative disorders, including Huntington's disease. One interaction of expanded polyglutamine repeats that is thought to be pathogenic is that with the short glutamine repeat in the transcriptional coactivator CREB binding protein, CBP. This interaction draws CBP away from its usual nuclear location to the expanded polyglutamine repeat protein aggregates that are characteristic of the polyglutamine neurodegenerative disorders. This interferes with CBP-mediated transcription and causes cytotoxicity.
Pssm-ID: 427171 [Multi-domain] Cd Length: 991 Bit Score: 47.45 E-value: 1.36e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1945 SMEPLATyqGEGKTRFSPD----PKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTL------IPSPNSPFQKVGKLASSD 2014
Cdd:pfam03154 13 SMSTLRS--GRKKQTASPDgrasPTNEDLRSSGRNSPSAASTSSNDSKAESMKKSSkkikeeAPSPLKSAKRQREKGASD 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2015 TGESDQSSTETDstvKSQEESTPKlDPQE------LAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRA 2088
Cdd:pfam03154 91 TEEPERATAKKS---KTQEISRPN-SPSEgegessDGRSVNDEGSSDPKDIDQDNRSTSPSIPSPQDNESDSDSSAQQQI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2089 SETsafSKPILSHQRSQLSPLTVKPQ---------PPARSSSLPKVSSPATSE-------VSGKDGLSPPGSSHPSPGRD 2152
Cdd:pfam03154 167 LQT---QPPVLQAQSGAASPPSPPPPgttqaatagPTPSAPSVPPQGSPATSQppnqtqsTAAPHTLIQQTPTLHPQRLP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2153 TPVSPADP-----------------PLFRLKYPSSPYSAHiSKSPRNTSPACSAPSPALSYSSAGSARSSPA-DAPDEKV 2214
Cdd:pfam03154 244 SPHPPLQPmtqppppsqvspqplpqPSLHGQMPPMPHSLQ-TGPSHMQHPVPPQPFPLTPQSSQSQVPPGPSpAAPGQSQ 322
|
330 340
....*....|....*....|..
gi 568935438 2215 QAVHSLKMlwQSTPQPPRGPRK 2236
Cdd:pfam03154 323 QRIHTPPS--QSQLQSQQPPRE 342
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
517-548 |
1.92e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 40.58 E-value: 1.92e-04
10 20 30
....*....|....*....|....*....|..
gi 568935438 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
398-433 |
3.33e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 39.83 E-value: 3.33e-04
10 20 30
....*....|....*....|....*....|....*.
gi 568935438 398 AYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRA 433
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYDRE 36
|
|
| TPR_8 |
pfam13181 |
Tetratricopeptide repeat; |
839-871 |
3.97e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 404131 [Multi-domain] Cd Length: 33 Bit Score: 39.69 E-value: 3.97e-04
10 20 30
....*....|....*....|....*....|...
gi 568935438 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARD 871
Cdd:pfam13181 1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
|
|
| TPR_2 |
pfam07719 |
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ... |
760-787 |
4.01e-04 |
|
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.
Pssm-ID: 429619 [Multi-domain] Cd Length: 33 Bit Score: 39.43 E-value: 4.01e-04
10 20
....*....|....*....|....*...
gi 568935438 760 RAYGNLGDCYEALGDYEEAIKYYEQYLS 787
Cdd:pfam07719 2 EALYNLGLAYYKLGDYEEALEAYEKALE 29
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
517-548 |
4.63e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 4.63e-04
10 20 30
....*....|....*....|....*....|..
gi 568935438 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
276-308 |
4.81e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 39.35 E-value: 4.81e-04
10 20 30
....*....|....*....|....*....|...
gi 568935438 276 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| Herpes_BLLF1 |
pfam05109 |
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 ... |
2065-2337 |
8.13e-04 |
|
Herpes virus major outer envelope glycoprotein (BLLF1); This family consists of the BLLF1 viral late glycoprotein, also termed gp350/220. It is the most abundantly expressed glycoprotein in the viral envelope of the Herpesviruses and is the major antigen responsible for stimulating the production of neutralising antibodies in vivo.
Pssm-ID: 282904 [Multi-domain] Cd Length: 886 Bit Score: 44.91 E-value: 8.13e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2065 SGGPAGPDREDSVVAPSST--TVFRASETSafskPILSHQRSQLSPLTVKPQP--PARSSSLPKVSSPaTSEVSgkdgLS 2140
Cdd:pfam05109 446 TGLPSSTHVPTNLTAPASTgpTVSTADVTS----PTPAGTTSGASPVTPSPSPrdNGTESKAPDMTSP-TSAVT----TP 516
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2141 PPGSSHPSPGRDTPVSPADPPLFRLKYPSS----PYSAHISKSPRNTSPACSAPSPALSYSSAGSARSSP---ADAP--- 2210
Cdd:pfam05109 517 TPNATSPTPAVTTPTPNATSPTLGKTSPTSavttPTPNATSPTPAVTTPTPNATIPTLGKTSPTSAVTTPtpnATSPtvg 596
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2211 DEKVQAVHSLKML--WQSTP---QPPRGPRKTCRGAPGTLTSKRDvlSLLNLSPRHGKEEGGAdrlELKELSVQRHDEVP 2285
Cdd:pfam05109 597 ETSPQANTTNHTLggTSSTPvvtSPPKNATSAVTTGQHNITSSST--SSMSLRPSSISETLSP---STSDNSTSHMPLLT 671
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568935438 2286 PKVPTNGHWCTDTATLTTAGGRSTTA--APRPLRLPLANGykflsPGRLFPSSK 2337
Cdd:pfam05109 672 SAHPTGGENITQVTPASTSTHHVSTSspAPRPGTTSQASG-----PGNSSTSTK 720
|
|
| PilF |
COG3063 |
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures]; |
799-1000 |
8.96e-04 |
|
Tfp pilus assembly protein PilF [Cell motility, Extracellular structures];
Pssm-ID: 225605 [Multi-domain] Cd Length: 250 Bit Score: 43.18 E-value: 8.96e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 799 AKAYRGLGNGHRATGSLQQALVCFEKrlVVAHelgeASNKAQAYGELGSLHSQLGnyeqaisclerQLNIARDMKDRALE 878
Cdd:COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEK--ALEH----DPSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALS 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 879 SDAACG-----LGGVYQQMGEYDTALQYHqldLQIAEETDNPTcQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQmN 953
Cdd:COG3063 98 LAPNNGdvlnnYGAFLCAQGRPEEAMQQF---ERALADPAYGE-PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-F 172
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568935438 954 DLVAKTvsyssLGRTHHALQNYSQAVMYLQE--------------GLRLAEQLGRREDEAK 1000
Cdd:COG3063 173 PPALLE-----LARLHYKAGDYAPARLYLERyqqrggaqaeslllGIRIAKRLGDRAAAQR 228
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
839-872 |
9.29e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.58 E-value: 9.29e-04
10 20 30
....*....|....*....|....*....|....
gi 568935438 839 AQAYGELGSLHSQLGNYEQAISCLERQLNIARDM 872
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
|
| PRK02603 |
PRK02603 |
photosystem I assembly protein Ycf3; Provisional |
890-1022 |
1.51e-03 |
|
photosystem I assembly protein Ycf3; Provisional
Pssm-ID: 179448 [Multi-domain] Cd Length: 172 Bit Score: 41.58 E-value: 1.51e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 890 QQMGEYDTALQYHQLDLQIAEetdNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLsiaaqmnDLVAKTVSysslgrth 969
Cdd:PRK02603 46 QADGEYAEALENYEEALKLEE---DPNDRSYILYNMGIIYASNGEHDKALEYYHQAL-------ELNPKQPS-------- 107
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 568935438 970 hALQNYsqAVMYLQEGlRLAEQLGrREDEAKIRHGLGLSLW------ASGNLEEAQHQL 1022
Cdd:PRK02603 108 -ALNNI--AVIYHKRG-EKAEEAG-DQDEAEALFDKAAEYWkqairlAPNNYIEAQNWL 161
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
387-508 |
1.57e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 43.92 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 387 QELSDYAAQGRAYGNMGNAYNALGMYDQAVKYHRQELQISMEVNDRASQAS----THGNLAVAY--QALGAHD--RALQH 458
Cdd:PRK11447 294 QAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESllkvNRYWLLIQQgdAALKANNlaQAERL 373
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|
gi 568935438 459 YQNhlniARELRDiqSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:PRK11447 374 YQQ----ARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
397-421 |
1.61e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.81 E-value: 1.61e-03
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
476-508 |
1.74e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 37.79 E-value: 1.74e-03
10 20 30
....*....|....*....|....*....|...
gi 568935438 476 ARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPD 508
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
397-425 |
2.12e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 37.40 E-value: 2.12e-03
10 20
....*....|....*....|....*....
gi 568935438 397 RAYGNMGNAYNALGMYDQAVKYHRQELQI 425
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALEL 30
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
367-508 |
2.15e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.15 E-value: 2.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 367 QMKGDYDTALKLHKTHLCIAQELSDyaaqgRAY--GNMGNAYNALGMYDQAVKYHRQELqismEVNDRASQASThgNLAV 444
Cdd:CHL00033 46 QSEGEYAEALQNYYEAMRLEIDPYD-----RSYilYNIGLIHTSNGEHTKALEYYFQAL----ERNPFLPQALN--NMAV 114
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568935438 445 AYQALGahDRALQhyQNHLNIARELRDiqsearalsnlgnfhcsrgeyvQAAPYYEQYLRLAPD 508
Cdd:CHL00033 115 ICHYRG--EQAIE--QGDSEIAEAWFD----------------------QAAEYWKQAIALAPG 152
|
|
| ycf3 |
CHL00033 |
photosystem I assembly protein Ycf3 |
432-546 |
2.39e-03 |
|
photosystem I assembly protein Ycf3
Pssm-ID: 176974 [Multi-domain] Cd Length: 168 Bit Score: 41.15 E-value: 2.39e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 432 RASQASTHGNLAVAYQALGAHDRALQHYQNHLniaRELRDIQSEARALSNLGNFHCSRGEYVQAAPYYEQYLRLAPDL-Q 510
Cdd:CHL00033 31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAM---RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLpQ 107
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 568935438 511 DMEGEGKVCHNLGYAHYCLGNYQ-------EAVKYYEQDLALA 546
Cdd:CHL00033 108 ALNNMAVICHYRGEQAIEQGDSEiaeawfdQAAEYWKQAIALA 150
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
517-548 |
3.05e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 3.05e-03
10 20 30
....*....|....*....|....*....|..
gi 568935438 517 KVCHNLGYAHYCLGNYQEAVKYYEQDLALAKD 548
Cdd:pfam00515 2 KALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| YciM |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted ... |
362-650 |
3.49e-03 |
|
Lipopolysaccharide biosynthesis regulator YciM, contains six TPR domains and a predicted metal-binding C-terminal domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 225504 [Multi-domain] Cd Length: 389 Bit Score: 42.00 E-value: 3.49e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 362 LGIIHQMKGDYDTALKLHKTHLciaqELSDYAAQGR--AYGNMGNAYNALGMYDQAVKYHRQelqiSMEVNDRASQASTH 439
Cdd:COG2956 75 LGNLFRSRGEVDRAIRIHQTLL----ESPDLTFEQRllALQQLGRDYMAAGLLDRAEDIFNQ----LVDEGEFAEGALQQ 146
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 440 gnLAVAYQAlgahDRalqHYQNHLNIARELRDIQSEARALsNLGNFHCsrgEYVQAAPYYEQYLRLAPDLQDMEGEGKVC 519
Cdd:COG2956 147 --LLNIYQA----TR---EWEKAIDVAERLVKLGGQTYRV-EIAQFYC---ELAQQALASSDVDRARELLKKALQADKKC 213
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 520 HN----LGYAHYCLGNYQEAVKYYE----QDLALAKDLHDKLsqAKAYCNLGLAFKALLNFAKAEECQK---YLLSLAQS 588
Cdd:COG2956 214 VRasiiLGRVELAKGDYQKAVEALErvleQNPEYLSEVLEML--YECYAQLGKPAEGLNFLRRAMETNTgadAELMLADL 291
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568935438 589 LDNSQAKFRALGNLGDIFICKKDINGAIKFYEQQLglshhvkDRRLEASAYAALGTAYRMVQ 650
Cdd:COG2956 292 IELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHL-------ADAEEGRAKESLDLLRDMVG 346
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
676-705 |
3.65e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 3.65e-03
10 20 30
....*....|....*....|....*....|
gi 568935438 676 CRAHGHLAAVYMALGKYTMAFKCYQEQLEL 705
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
236-268 |
3.68e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 37.04 E-value: 3.68e-03
10 20 30
....*....|....*....|....*....|...
gi 568935438 236 ARELGNMGAVYIAMGDFENAVQCHEQHLRIAKD 268
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| TPR |
COG0790 |
TPR repeat [Signal transduction mechanisms]; |
316-594 |
4.80e-03 |
|
TPR repeat [Signal transduction mechanisms];
Pssm-ID: 223861 [Multi-domain] Cd Length: 292 Bit Score: 41.57 E-value: 4.80e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 316 MRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASSNLGIIHQMKGDYDTALKLHKThlciAQELSDYAAQ 395
Cdd:COG0790 1 PLFALLLSGKSLFAAAEENAVSTLGKLLSEGGDPLMAAVALKSALLNGAGSAYPPDYAKALKSYEK----AAELGDAAAL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 396 GRAYGNMGNAYNALGMYDQAVKYHRQelqiSMEVNDRASQAsthgNLAVAYQALGAHDRALQHYQNHLNIARELRDIQSE 475
Cdd:COG0790 77 ALLGQMYGAGKGVSRDKTKAADWYRC----AAADGLAEALF----NLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAA 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 476 ARALsNLGNFHCSRGEYVQAAPYYEQYLRLAPDLQDMeGEGKVCHNLGYAHYC-LG---NYQEAVKYYEQdlaLAKDLHD 551
Cdd:COG0790 149 LAMY-RLGLAYLSGLQALAVAYDDKKALYLYRKAAEL-GNPDAQLLLGRMYEKgLGvprDLKKAFRWYKK---AAEQGDG 223
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 568935438 552 klsqAKAYcNLGLAFKALLNFAKAEECQK-YLLSLAQSLDNSQA 594
Cdd:COG0790 224 ----AACY-NLGLMYLNGEGVKKAAFLTAaKEEDKKQALEWLQK 262
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
276-308 |
4.93e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 425728 [Multi-domain] Cd Length: 34 Bit Score: 36.63 E-value: 4.93e-03
10 20 30
....*....|....*....|....*....|...
gi 568935438 276 ARAYSNLGSAYHYRRNFDKAMSYHNCVLELAQE 308
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| PTZ00449 |
PTZ00449 |
104 kDa microneme/rhoptry antigen; Provisional |
2097-2235 |
4.97e-03 |
|
104 kDa microneme/rhoptry antigen; Provisional
Pssm-ID: 185628 [Multi-domain] Cd Length: 943 Bit Score: 41.98 E-value: 4.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2097 PILSHQRSQLSPLTVKPQPPARSSSLPKVSSPATSEvsgkdglsppgsshpspgrdTPVSPADPplFRLKYPSSPYSAHI 2176
Cdd:PTZ00449 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPK--------------------RPRSAQRP--TRPKSPKLPELLDI 620
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568935438 2177 SKSPRN----TSPAcSAPSPalsyssagSARSSPadapdEKVQAVHSLKmlwqsTPQPPRGPR 2235
Cdd:PTZ00449 621 PKSPKRpespKSPK-RPPPP--------QRPSSP-----ERPEGPKIIK-----SPKPPKSPK 664
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
122-295 |
5.00e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 41.27 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 122 LSSAHWSLGNTEKSTGYMQQDLDVAKTLGDQtgecraHGNLGSAFFSKGNYREALTnhRHQLVLAMKLKDreaaSSALSS 201
Cdd:COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDREL------LAAQGKNQIRNGNFGEAVS--VLRKAARLAPTD----WEAWNL 139
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 202 LGHVYTAIGDYPNALASHKQCVLLAKQskddlsEARELGNMGAVYIAMGDFENAvqchEQHLRIAKDLGSKREEARAysN 281
Cdd:COG5010 140 LGAALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDA----ETLLLPAYLSPAADSRVRQ--N 207
|
170
....*....|....
gi 568935438 282 LGSAYHYRRNFDKA 295
Cdd:COG5010 208 LALVVGLQGDFREA 221
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
438-471 |
5.55e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.36 E-value: 5.55e-03
10 20 30
....*....|....*....|....*....|....
gi 568935438 438 THGNLAVAYQALGAHDRALQHYQNHLNIARELRD 471
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| PHA03307 |
PHA03307 |
transcriptional regulator ICP4; Provisional |
1961-2233 |
5.92e-03 |
|
transcriptional regulator ICP4; Provisional
Pssm-ID: 223039 [Multi-domain] Cd Length: 1352 Bit Score: 42.08 E-value: 5.92e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 1961 SPDPKQPCVKAPGGVRLSVSSKGSVSTPNSPVKMTLIPSPNSPFQKVGKLASSDTGESDQSSTETDSTVK--SQEESTPK 2038
Cdd:PHA03307 178 SPEETARAPSSPPAEPPPSTPPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCgwGPENECPL 257
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2039 LDPQELAQRILEETKSHLLAVERLQRSGGPAGPDREDSVVAPSSTTVFRASETSAFSKPILShqrsqlspltvkpqpPAR 2118
Cdd:PHA03307 258 PRPAPITLPTRIWEASGWNGPSSRPGPASSSSSPRERSPSPSPSSPGSGPAPSSPRASSSSS---------------SSR 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 2119 SSSLPKVSSpaTSEVSGKDGLSPPGSSHPSPGRDTPVSPADPPLFR-----LKYPSSPYSAHISKSPRNTSPACSAPS-P 2192
Cdd:PHA03307 323 ESSSSSTSS--SSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRkrprpSRAPSSPAASAGRPTRRRARAAVAGRArR 400
|
250 260 270 280
....*....|....*....|....*....|....*....|....*....
gi 568935438 2193 ALSYSSAGSARSSP----ADAPDEKVQAVHSLKML----WQSTPQPPRG 2233
Cdd:PHA03307 401 RDATGRFPAGRPRPspldAGAASGAFYARYPLLTPsgepWPGSPPPPPG 449
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
520-550 |
6.10e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433156 [Multi-domain] Cd Length: 42 Bit Score: 36.33 E-value: 6.10e-03
10 20 30
....*....|....*....|....*....|.
gi 568935438 520 HNLGYAHYCLGNYQEAVKYYEQDLALAKDLH 550
Cdd:pfam13374 6 NNLANALRAQGRYDEAEELLEEALAIRERVL 36
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
191-470 |
7.15e-03 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 41.14 E-value: 7.15e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 191 DREAASSALSSLGHVYTAIGDYPNALASHKQCVLLAKQSKDDLSEARELGNMGAVYIAMGDFENAVQCHEQHLRIAKDLG 270
Cdd:pfam17874 35 DLLARGLATFVLGEAYLCLGDLDAALQAMREAEALARRADSPHVTLWALLQQGEILRAQGRLHQALETYQQALQLARDHG 114
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 271 SKREEA--RAYSNLGSAYHYRRNFDKAMSYHNCVLELAQELMEKpIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAE- 347
Cdd:pfam17874 115 LQHLPLhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPD-AAVDAYVLLARIALAQGELEEALTLLRRAELLARq 193
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 348 -----DLKDRAAEGRAssnlgIIHQMKGDYDTALK-LHKTHLciaQELSDYAAQGRAYGNMGNAYNALGMYDQAvkyhrq 421
Cdd:pfam17874 194 sffhvDWLANAERVRV-----RLWLARGDLRAAVRwLRAAEP---PSDADNHFLERELRNLARVLLALGRFDDA------ 259
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 568935438 422 eLQISMEVNDRA--SQASTHGN-----LAVAYQALGAHDRALQHYQNHLNIARELR 470
Cdd:pfam17874 260 -LSLLERLQNLAeqLGRVRSLIenlilQALALLALGRPDEALQALLDALSLAEPEG 314
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
759-941 |
7.40e-03 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 227343 [Multi-domain] Cd Length: 257 Bit Score: 40.50 E-value: 7.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 759 GRAYGNLGDCYEALGDYEEAIKYYEQYLsVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHELGeasnK 838
Cdd:COG5010 34 AKATGAPESSLAMRQTQGAAAALGAAVL-RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQG----K 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568935438 839 AQAygelgslhsQLGNYEQAISCLERQLNIARDmkdralESDAACGLGGVYQQMGEYDTA-LQYHQ-LDLQIAEEtdnpt 916
Cdd:COG5010 109 NQI---------RNGNFGEAVSVLRKAARLAPT------DWEAWNLLGAALDQLGRFDEArRAYRQaLELAPNEP----- 168
|
170 180
....*....|....*....|....*
gi 568935438 917 cqgRAYGNLGLTYESLGTFERAVVY 941
Cdd:COG5010 169 ---SIANNLGMSLLLRGDLEDAETL 190
|
|
|