|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
58-818 |
5.13e-20 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 97.05 E-value: 5.13e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 58 HNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEaqrIQERLCAQNSELQGKANEIEKTfq 137
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEE---LQKELYALANEISRLEQQKQIL-- 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 138 isqekwREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELES--RVRETALGEFRLQTEEW 215
Cdd:TIGR02168 308 ------RERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEEleAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 216 EAERRELQLIVQEQDSAvqsmQKKVEQLEAEHMDCSDLLRRQTSELEfsTQREERLRKEFEATTLRVRKLEENIEAERAA 295
Cdd:TIGR02168 382 ETLRSKVAQLELQIASL----NNEIERLEARLERLEDRRERLQQEIE--ELLKKLEEAELKELQAELEELEEELEELQEE 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 296 HLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNtqescaklnLLEREYFSQN----- 370
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL---------LKNQSGLSGIlgvls 526
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 371 KKLNEEIEDQKKVIIDLSKRLQY----NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKD 446
Cdd:TIGR02168 527 ELISVDEGYEAAIEAALGGRLQAvvveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKD 606
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 447 KDK-PPSFSVVLETLRRTL---TDYQNKLEDASNELNN----------------INDAKEKTSNELDSTKQKIETHIKNT 506
Cdd:TIGR02168 607 LVKfDPKLRKALSYLLGGVlvvDDLDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKI 686
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 507 KELQDKLTEVHKELSHLRAKCADREALITSLK----------VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEK 576
Cdd:TIGR02168 687 EELEEKIAELEKALAELRKELEELEEELEQLRkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEEL 766
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 577 LTFLHTLYQHLVAGCVLIKQPEGMLDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTf 656
Cdd:TIGR02168 767 EERLEEAEEELAEAEAEIEELEAQIEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL- 843
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 657 nkvaeqikaqescwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLSRTQREqtc 736
Cdd:TIGR02168 844 --------------EEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRE--- 905
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 737 llaacalmagalcpLYSRSCALSTQRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFR 812
Cdd:TIGR02168 906 --------------LESKRSELRRELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEAR 971
|
....*.
gi 568926833 813 KGVIAI 818
Cdd:TIGR02168 972 RRLKRL 977
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-346 |
9.76e-14 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 76.51 E-value: 9.76e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 60 AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLcaqnSELQGKANEIEKTFQIS 139
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEE----YELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 140 QEKWREECRRFEHDLEERDNIiqncNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRvrETALGEFRLQTEEWEAER 219
Cdd:COG1196 308 EERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEA--EEALLEAEAELAEAEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 220 RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 299
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEAL 461
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 568926833 300 KFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYE 346
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
66-380 |
1.03e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.50 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 66 ESQIARLRSEVEKGE---ALRQRLEydlavarkeaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtFQISQEK 142
Cdd:COG1196 199 ERQLEPLERQAEKAEryrELKEELK-------------ELEAELLLLKLRELEAELEELEAELEELEAELEE-LEAELAE 264
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 143 WREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELEsrvretalgEFRLQTEEWEAERREL 222
Cdd:COG1196 265 LEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLE---------ELEEELAELEEELEEL 335
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 223 QLIVQEQDSAVQSMQKKVEQLEAEhmdcsdLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFN 302
Cdd:COG1196 336 EEELEELEEELEEAEEELEEAEAE------LAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAE 409
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926833 303 SEIIQLRIRdLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 380
Cdd:COG1196 410 EALLERLER-LEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
46-375 |
2.34e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.47 E-value: 2.34e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 46 RAKKEKLEMTtkhNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSEL 125
Cdd:TIGR02169 670 RSEPAELQRL---RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 126 QGKANEIEKTFQiSQEKWREECRRFEHDLEE------------RDNIIQNCNQEYESLMQEKTRLQKTLQEI---LEKHE 190
Cdd:TIGR02169 747 SSLEQEIENVKS-ELKELEARIEELEEDLHKleealndlearlSHSRIPEIQAELSKLEEEVSRIEARLREIeqkLNRLT 825
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 191 QEKTELESRVRE--TALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQRE 268
Cdd:TIGR02169 826 LEKEYLEKEIQElqEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKI 905
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 269 ERLRKEFEATTLRVRKLEENIEA--ERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKN----EFKEVE 342
Cdd:TIGR02169 906 EELEAQIEKKRKRLSELKAKLEAleEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMlaiqEYEEVL 985
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 568926833 343 SAY----------EREKQNTQESCAKLNLLEREYFSQ-----NKKLNE 375
Cdd:TIGR02169 986 KRLdelkekraklEEERKAILERIEEYEKKKREVFMEafeaiNENFNE 1033
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
64-378 |
5.81e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 5.81e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisQEKW 143
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKE----LEELEEELEQLRKELEELSRQISALRKDLARLEAE----VEQL 745
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 144 REECRRFEHDLEERDNIIQNCNQEYESlmqektrlqktLQEILEKHEQEKTELESRVRetalgEFRLQTEEWEAERRELQ 223
Cdd:TIGR02168 746 EERIAQLSKELTELEAEIEELEERLEE-----------AEEELAEAEAEIEELEAQIE-----QLKEELKALREALDELR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 224 LIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---------ERA 294
Cdd:TIGR02168 810 AELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAllnerasleEAL 889
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 295 AHLESKFNSEIIQLR-----IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESA----YEREKQNTQESCAKLNLLERE 365
Cdd:TIGR02168 890 ALLRSELEELSEELReleskRSELRRELEELREKLAQLELRLEGLEVRIDNLQERlseeYSLTLEEAEALENKIEDDEEE 969
|
330
....*....|...
gi 568926833 366 YFSQNKKLNEEIE 378
Cdd:TIGR02168 970 ARRRLKRLENKIK 982
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
37-330 |
9.64e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.42 E-value: 9.64e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 37 IADLRKKLHRAKKEKLEMTTKH---NAELSSYESQIARLRSEVE-KGEALRQ------RLEYDLAVARKEaglgRRAAEE 106
Cdd:COG1196 241 LEELEAELEELEAELEELEAELaelEAELEELRLELEELELELEeAQAEEYEllaelaRLEQDIARLEER----RRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 107 RLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEIL 186
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAA 396
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 187 EKHEQEKTELESRVR-ETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFST 265
Cdd:COG1196 397 ELAAQLEELEEAEEAlLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLE 476
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926833 266 QREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVAD 330
Cdd:COG1196 477 AALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALE 541
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
191-430 |
5.30e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 5.30e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 191 QEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREER 270
Cdd:COG1196 220 EELKELEAELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 271 LRKEFEATTLRVRKLEENIEAERAAHLEskfnseiIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQ 350
Cdd:COG1196 300 LEQDIARLEERRRELEERLEELEEELAE-------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEA 372
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 351 NTQEscaKLNLLEREYFSQNKKLNEEIEDQKKvIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIL 430
Cdd:COG1196 373 ELAE---AEEELEELAEELLEALRAAAELAAQ-LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
167-432 |
9.59e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.95 E-value: 9.59e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 167 EYESLMQEKTRLQKTLQEILEKHEQEKTELesRVRETALGEFRLQTEEWEAERRELQlivqeqdSAVQSMQKKVEQLEAE 246
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAEL--AELEAELEELRLELEELELELEEAQ-------AEEYELLAELARLEQD 303
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 247 hmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAE 326
Cdd:COG1196 304 -------IARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 327 AVADLEMIKNEFKEVESA---YEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQE 403
Cdd:COG1196 377 AEEELEELAEELLEALRAaaeLAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEE 456
|
250 260
....*....|....*....|....*....
gi 568926833 404 ELVMAKKHQAFLVETCENNVRELESILGS 432
Cdd:COG1196 457 EEEALLELLAELLEEAALLEAALAELLEE 485
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
21-577 |
1.16e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 59.69 E-value: 1.16e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 21 SLDVKQMLKNETE--------SDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAV 92
Cdd:PRK03918 167 LGEVIKEIKRRIErlekfikrTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 93 ARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqEKWREECRRFEHDLEERDNIIQNCNQEYESLM 172
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKEL-----KEKAEEYIKLSEFYEEYLDELREIEKRLSRLE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 173 QEKTRLQKTLQEiLEKHEQEKTELESRVRETalgefRLQTEEWEAERRELQLIVQEQDSAvQSMQKKVEQLEAEHMDcsd 252
Cdd:PRK03918 321 EEINGIEERIKE-LEEKEERLEELKKKLKEL-----EKRLEELEERHELYEEAKAKKEEL-ERLKKRLTGLTPEKLE--- 390
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 253 llrrqtSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDL----------EGALQVEKA 322
Cdd:PRK03918 391 ------KELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELteehrkelleEYTAELKRI 464
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 323 SQ--AEAVADLEMIKNEFKEVESAYEREKQ------------NTQESCAKLNLLE-----REYFSQNKKLNE------EI 377
Cdd:PRK03918 465 EKelKEIEEKERKLRKELRELEKVLKKESEliklkelaeqlkELEEKLKKYNLEElekkaEEYEKLKEKLIKlkgeikSL 544
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 378 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL----VETCENNVRELESILGSFSvsaqwtsgvhKDKDKPPSf 453
Cdd:PRK03918 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELgfesVEELEERLKELEPFYNEYL----------ELKDAEKE- 613
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 454 svvLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--ETHikntKELQDKLTEVHKELSHLRAKCADRE 531
Cdd:PRK03918 614 ---LEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYseEEY----EELREEYLELSRELAGLRAELEELE 686
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568926833 532 ALITSLKVELQNVLHcwEKEKACAAQCESELQKLSQAFQKDSEEKL 577
Cdd:PRK03918 687 KRREEIKKTLEKLKE--ELEEREKAKKELEKLEKALERVEELREKV 730
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
149-710 |
4.88e-08 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 57.82 E-value: 4.88e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 149 RFEHDLEERDNIIQNCNQEY-ESLMQEKTR----LQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRE 221
Cdd:pfam15921 56 KYEVELDSPRKIIAYPGKEHiERVLEEYSHqvkdLQRRLNESNELHEKQKFYLRQSVidLQTKLQEMQMERDAMADIRRR 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 222 LQlivQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEfstqreeRLRK---EFEATTLRVRKLEenIEAERAAHLE 298
Cdd:pfam15921 136 ES---QSQEDLRNQLQNTVHELEAAKCLKEDMLEDSNTQIE-------QLRKmmlSHEGVLQEIRSIL--VDFEEASGKK 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 299 SKFNSEIIQLRIRDLEGALQvekASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYfsqNKKLNEEIE 378
Cdd:pfam15921 204 IYEHDSMSTMHFRSLGSAIS---KILRELDTEISYLKGRIFPVEDQLEALKSESQN---KIELLLQQH---QDRIEQLIS 274
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 379 DQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLE 458
Cdd:pfam15921 275 EHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLA 354
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 459 TlrRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR-------E 531
Cdd:pfam15921 355 N--SELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlE 432
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 532 ALITSLKVELQNVLhcwEKEKACAAQCESELQKLSqAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCA 611
Cdd:pfam15921 433 ALLKAMKSECQGQM---ERQMAAIQGKNESLEKVS-SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTA 503
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 612 VLQENVDALIAD-------LNRANEKISHLEYIcKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQK------------ 672
Cdd:pfam15921 504 SLQEKERAIEATnaeitklRSRVDLKLQELQHL-KNEGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtqlvgqhg 582
|
570 580 590 600
....*....|....*....|....*....|....*....|....*.
gi 568926833 673 --------QKKELEFQYSELLLEVqrraQKFQEIAEKNSEKLNRIE 710
Cdd:pfam15921 583 rtagamqvEKAQLEKEINDRRLEL----QEFKILKDKKDAKIRELE 624
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
90-590 |
7.41e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.00 E-value: 7.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 90 LAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEK--TFQISQEKWREECRRFEHDLEERDNIIQNCNQE 167
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 168 YESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVRetalgefRLQTEEWEAER-RELQLIVQEQDSAVQSMQKKVEQL 243
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELeerIEELKKEIEELEEKVK-------ELKELKEKAEEyIKLSEFYEEYLDELREIEKRLSRL 319
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 244 EAEhmdcSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA-ERAAHLES---KFNSEIIQLRIRDLEGALQV 319
Cdd:PRK03918 320 EEE----INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELyEEAKAKKEeleRLKKRLTGLTPEKLEKELEE 395
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 320 EKASQAEAVADLEMIKNEFKEVESAYEREKQNTQE---SCAKLNLLEREYFSQNKKlnEEIEDQKKVIIDLSKRLQYNEK 396
Cdd:PRK03918 396 LEKAKEEIEEEISKITARIGELKKEIKELKKAIEElkkAKGKCPVCGRELTEEHRK--ELLEEYTAELKRIEKELKEIEE 473
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 397 SCGELQEELV-----MAKKHQAFLVETCENNVRELESILGSFsvsaqwtsGVHKDKDKPPSFSVVLETLR------RTLT 465
Cdd:PRK03918 474 KERKLRKELRelekvLKKESELIKLKELAEQLKELEEKLKKY--------NLEELEKKAEEYEKLKEKLIklkgeiKSLK 545
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 466 DYQNKLEDASNELNNINDAKEKTSNELDSTKQKI-ETHIKNTKELQDKLTEVHK------ELSHLRAKCADREALITSLK 538
Cdd:PRK03918 546 KELEKLEELKKKLAELEKKLDELEEELAELLKELeELGFESVEELEERLKELEPfyneylELKDAEKELEREEKELKKLE 625
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|..
gi 568926833 539 VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAG 590
Cdd:PRK03918 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAG 677
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
183-516 |
2.34e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 183 QEILEKHEQEKtELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHmdcsdllrrqtSELE 262
Cdd:TIGR02168 213 ERYKELKAELR-ELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEV-----------SELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 263 fstQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVE 342
Cdd:TIGR02168 281 ---EEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 343 SAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKviidLSKRLQYNEKSCGELQEElvmakkhqaflVETCENN 422
Cdd:TIGR02168 358 AELEELEAELEELESRLEELEEQLETLRSKVAQLELQIAS----LNNEIERLEARLERLEDR-----------RERLQQE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 423 VRELESILGSFSVSAQWTSgvhkdkdkppsfsvvLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETH 502
Cdd:TIGR02168 423 IEELLKKLEEAELKELQAE---------------LEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487
|
330
....*....|....
gi 568926833 503 IKNTKELQDKLTEV 516
Cdd:TIGR02168 488 QARLDSLERLQENL 501
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
8-559 |
3.08e-07 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 55.05 E-value: 3.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 8 NATPGDTQ-----------------RLKNASLDVKQMLKNETESdiIADLRKKLhrAKKEKLEMttkhNAELSSYESQIA 70
Cdd:PRK02224 145 NATPSDRQdmiddllqlgkleeyreRASDARLGVERVLSDQRGS--LDQLKAQI--EEKEEKDL----HERLNGLESELA 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 71 RLRSEVEKGEALRQRleydlAVARKEAglgrraAEERLAE-AQRIQE--RLCAQNSELQGKANEIEKTFQISQEKWREEC 147
Cdd:PRK02224 217 ELDEEIERYEEQREQ-----ARETRDE------ADEVLEEhEERREEleTLEAEIEDLRETIAETEREREELAEEVRDLR 285
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 148 RRFEHDLEERDNIIQNCnqEYESLMQEktrlqkTLQEILEKHEQEKTELESRVRE--TALGEFRLQTE------------ 213
Cdd:PRK02224 286 ERLEELEEERDDLLAEA--GLDDADAE------AVEARREELEDRDEELRDRLEEcrVAAQAHNEEAEslredaddleer 357
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 214 --EWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE- 290
Cdd:PRK02224 358 aeELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRt 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 291 -----AERAAHLESKFNSEIIQlrirDLEGALQVEKASQ-----AEAVADLEMIKNEFKEVESAYEREKQnTQESCAKLN 360
Cdd:PRK02224 438 arervEEAEALLEAGKCPECGQ----PVEGSPHVETIEEdrervEELEAELEDLEEEVEEVEERLERAED-LVEAEDRIE 512
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 361 LLEreyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL-----VMAKKHQAflVETCENNVRELESILGSFSV 435
Cdd:PRK02224 513 RLE----ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAeekreAAAEAEEE--AEEAREEVAELNSKLAELKE 586
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 436 SAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDStkQKIETHIKNTKELQDKLTE 515
Cdd:PRK02224 587 RIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQ 664
|
570 580 590 600
....*....|....*....|....*....|....*....|....
gi 568926833 516 VHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCE 559
Cdd:PRK02224 665 VEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
133-404 |
3.44e-07 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 54.74 E-value: 3.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 133 EKTFQISQEKWREECRRFEHDLEERDNIiqncnQEYESLMQEKTRLQKTLQEilekhEQEKTELEsrvRETALGEFRLqt 212
Cdd:pfam17380 291 EKFEKMEQERLRQEKEEKAREVERRRKL-----EEAEKARQAEMDRQAAIYA-----EQERMAME---RERELERIRQ-- 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 213 eewEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLEENI 289
Cdd:pfam17380 356 ---EERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQEEA 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 290 EAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEMIKNEFKEVESAYEREKQNTQESCA-KLNLLERE 365
Cdd:pfam17380 433 RQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMIEEE 512
|
250 260 270
....*....|....*....|....*....|....*....
gi 568926833 366 yfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:pfam17380 513 --RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
34-538 |
4.08e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 54.68 E-value: 4.08e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 34 SDIIADLRKKLHRAKKEKLEMTtKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQR 113
Cdd:PRK03918 213 SSELPELREELEKLEKEVKELE-ELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI----EELEEKVKELKE 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 114 IQE------RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEhDLEERDNIIQNCNQEYESLMQEKTRLQ-------- 179
Cdd:PRK03918 288 LKEkaeeyiKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIK-ELEEKEERLEELKKKLKELEKRLEELEerhelyee 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 180 -KTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDC-------- 250
Cdd:PRK03918 367 aKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCpvcgrelt 446
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 251 ----SDLLRRQTSELEfstqreeRLRKEFEATTLRVRKLEEnieaeRAAHLESKFNSEIIQLRIRDLegALQVEKASQAE 326
Cdd:PRK03918 447 eehrKELLEEYTAELK-------RIEKELKEIEEKERKLRK-----ELRELEKVLKKESELIKLKEL--AEQLKELEEKL 512
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 327 AVADLEMIKNEFKEVESAYErekqntqescaKLNLLEREYFSQNKKLnEEIEDQKKVIIDLSKRLQYNEKSCGELQEELv 406
Cdd:PRK03918 513 KKYNLEELEKKAEEYEKLKE-----------KLIKLKGEIKSLKKEL-EKLEELKKKLAELEKKLDELEEELAELLKEL- 579
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 407 maKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELN------- 479
Cdd:PRK03918 580 --EELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEelekkys 657
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926833 480 -----NINDAKEKTSNE----------LDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLK 538
Cdd:PRK03918 658 eeeyeELREEYLELSRElaglraeleeLEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREKVK 731
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
150-543 |
4.30e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 54.64 E-value: 4.30e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 150 FEHDLEERDNIIQNCNQEYeslmqekTRLQKTLQeILEKHEQEKTELESRVREtalgeFRLQTEEWEAERRELQLIVQEQ 229
Cdd:TIGR04523 178 LEKEKLNIQKNIDKIKNKL-------LKLELLLS-NLKKKIQKNKSLESQISE-----LKKQNNQLKDNIEKKQQEINEK 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 230 DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEatTLRVRKLEENIEAERAAHLESKFNSEIIQLR 309
Cdd:TIGR04523 245 TTEISNTQTQLNQLKDEQNKIKKQLSEKQKELEQNNKKIKELEKQLN--QLKSEISDLNNQKEQDWNKELKSELKNQEKK 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 310 IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREyfsqNKKLNEEIEDQKKVIIDLSK 389
Cdd:TIGR04523 323 LEEIQNQISQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKE----NQSYKQEIKNLESQINDLES 398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 390 RLQYNEKSCGELQEELVMAKKhqaflvetcENNVRELE-SILGSFSVSAQWTSGVHKDKDKppSFSVVLETLRRTLTDYQ 468
Cdd:TIGR04523 399 KIQNQEKLNQQKDEQIKKLQQ---------EKELLEKEiERLKETIIKNNSEIKDLTNQDS--VKELIIKNLDNTRESLE 467
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926833 469 NKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQN 543
Cdd:TIGR04523 468 TQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEKLESEKKEKESKISD 542
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
177-567 |
9.19e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 53.53 E-value: 9.19e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 177 RLQKTLQEILEKHEQEKtELESRVRETALGEFRLQTEEWEAER-RELQLIVQEQD-----SAVQSMQKKVEQLEAEhmdc 250
Cdd:TIGR02169 171 KKEKALEELEEVEENIE-RLDLIIDEKRQQLERLRREREKAERyQALLKEKREYEgyellKEKEALERQKEAIERQ---- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 251 sdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAVAd 330
Cdd:TIGR02169 246 ---LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSIA- 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 331 lemiknefkevesAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQynekscgELQEELvmakk 410
Cdd:TIGR02169 312 -------------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------ELKEEL----- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 411 hqaflvetcennvRELESILGSFSVSAQwtsgvhkdkdkppsfsvvleTLRRTLTDYQNKLEDASNELNNINDAKEKTSN 490
Cdd:TIGR02169 367 -------------EDLRAELEEVDKEFA--------------------ETRDELKDYREKLEKLKREINELKRELDRLQE 413
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926833 491 ELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQ 567
Cdd:TIGR02169 414 ELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
28-562 |
1.60e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.60e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 28 LKNETESDIIADLRKKLHRAKKEKLEMTTKHNAELSSYEsQIARLRSEVEKGEALRQRLEYdlavARKEAGLGRRAAEER 107
Cdd:PTZ00121 1383 AKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKAD-EAKKKAEEKKKADEAKKKAEE----AKKADEAKKKAEEAK 1457
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 108 LAEAQRIQERLCAQNSELQGKANEIEKTFQISQE-----KWREECRRFEHDLEERDNIiQNCNQEYESLMQEKTRLQKTL 182
Cdd:PTZ00121 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKaeeakKKADEAKKAAEAKKKADEA-KKAEEAKKADEAKKAEEAKKA 1536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 183 QEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELE 262
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 263 FSTQREERLRKEFE----ATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEavadlemikNEF 338
Cdd:PTZ00121 1617 EAKIKAEELKKAEEekkkVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE---------EDE 1687
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 339 KEVESAYEREKQNTQEScAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVE- 417
Cdd:PTZ00121 1688 KKAAEALKKEAEEAKKA-EELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEe 1766
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 418 --TCENNVRELESILgsfsvsaqwTSGVhkDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDST 495
Cdd:PTZ00121 1767 ekKAEEIRKEKEAVI---------EEEL--DEEDEKRRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEV 1835
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926833 496 KQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESEL 562
Cdd:PTZ00121 1836 ADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFNKEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
24-404 |
2.26e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.45 E-value: 2.26e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 24 VKQMLKNETESDIIADLRKKLHRAKKEKLEMttKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRA 103
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 104 AEERLAEAQRIQERLCAQNSELQGKANEIEKtfQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQ 183
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKK--AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 184 EILEKHEQEKTELESRVREtalGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRR--QTSEL 261
Cdd:PTZ00121 1460 EEAKKKAEEAKKADEAKKK---AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKaeEAKKA 1536
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 262 EFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNS---------EIIQLRIRDLEGALQVEKASQAEAVADLE 332
Cdd:PTZ00121 1537 DEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMalrkaeeakKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568926833 333 MIKNEFKEVESAYEREKQNTQescakLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:PTZ00121 1617 EAKIKAEELKKAEEEKKKVEQ-----LKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKA 1683
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
72-524 |
2.62e-06 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 52.04 E-value: 2.62e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 72 LRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFE 151
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 152 HDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETALgEFRLQTEEWEAE----------RRE 221
Cdd:pfam15921 342 DKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSL-EKEQNKRLWDRDtgnsitidhlRRE 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 222 LqlivQEQDSAVQSMQKKVEQLEAEhmdCSDLLRRQTSELEFSTQREER---LRKEFEATTLRVRKLEENIEAERAAHLE 298
Cdd:pfam15921 421 L----DDRNMEVQRLEALLKAMKSE---CQGQMERQMAAIQGKNESLEKvssLTAQLESTKEMLRKVVEELTAKKMTLES 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 299 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAyEREKQNTQESCAKLNLLEREYFSQNKKLNEEIE 378
Cdd:pfam15921 494 SERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNE-GDHLRNVQTECEALKLQMAEKDKVIEILRQQIE 572
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 379 DQKKVIIDLSKRLQYNEKSCGELQEEL---VMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsv 455
Cdd:pfam15921 573 NMTQLVGQHGRTAGAMQVEKAQLEKEIndrRLELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR------ 646
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926833 456 VLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIEThikNTKELQDKLTEVHKELSHLR 524
Cdd:pfam15921 647 AVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMET---TTNKLKMQLKSAQSELEQTR 712
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
37-405 |
2.94e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 51.69 E-value: 2.94e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 37 IADLRKKLHRAKKEKLEMTTKHNaELSSYESQIARLRSEVEKGEALRQRLEYdlAVARKEAGLGRRAAEERLAEAQRIQE 116
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 117 RLCAQNSELQGKANEIEKTFQiSQEKWREECRR-FEHDLEERDNIIQNCNQEYESLMQEKTRLQ---KTLQEILEKHEQE 192
Cdd:COG4717 150 ELEERLEELRELEEELEELEA-ELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEeelEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 193 KTELESRVRETALGEfRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVE----------QLEAEHMDCSDLLRRQTSELE 262
Cdd:COG4717 229 LEQLENELEAAALEE-RLKEARLLLLIAAALLALLGLGGSLLSLILTIAgvlflvlgllALLFLLLAREKASLGKEAEEL 307
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 263 FSTQREERLRKEFEATTLRVRKLEENIEAERAAHL----------ESKFNSEIIQLRIRDLEGALQVE-KASQAEAVADL 331
Cdd:COG4717 308 QALPALEELEEEELEELLAALGLPPDLSPEELLELldrieelqelLREAEELEEELQLEELEQEIAALlAEAGVEDEEEL 387
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926833 332 EMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKK-LNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL 405
Cdd:COG4717 388 RAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEeLEEELEELEEELEELEEELEELREELAELEAEL 462
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
175-525 |
3.32e-06 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 51.43 E-value: 3.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 175 KTRLQKTLQEILEKHEqeKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLl 254
Cdd:pfam07888 33 QNRLEECLQERAELLQ--AQEAANRQREKEKERYKRDREQWERQRRELESRVAELKEELRQSREKHEELEEKYKELSAS- 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 255 rrqtseLEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMI 334
Cdd:pfam07888 110 ------SEELSEEKDALLAQRAAHEARIRELEEDIKTLTQRVLERETELERMKERAKKAGAQRKEEEAERKQLQAKLQQT 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 335 KNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE------EIEDQKKVIIDLSKRLQYNEKSCGELQEEL--- 405
Cdd:pfam07888 184 EEELRSLSKEFQELRNSLAQRDTQVLQLQDTITTLTQKLTTahrkeaENEALLEELRSLQERLNASERKVEGLGEELssm 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 406 ------VMAKKHQAFLvETCENNVRELESILGSFSVSAQWTsgvhKDKdkppsfsvvlETLRRTLTDYQNKLEDASNELN 479
Cdd:pfam07888 264 aaqrdrTQAELHQARL-QAAQLTLQLADASLALREGRARWA----QER----------ETLQQSAEADKDRIEKLSAELQ 328
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 568926833 480 nindAKEKTSNELDSTKQKIETHIKNTKEL-QDKLTEVHKELSHLRA 525
Cdd:pfam07888 329 ----RLEERLQEERMEREKLEVELGREKDCnRVQLSESRRELQELKA 371
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
34-246 |
4.73e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 4.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 34 SDIIADLRKKLHRAKKEKLEMTTKHN---AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE 110
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAalkKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 111 AQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRR---FEHDLEERDNIIQNCNQEYESLMQEKTRLQ---KTLQE 184
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEaerAELEA 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926833 185 ILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE 246
Cdd:COG4942 179 LLAELEEERAALEALKaeRQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAER 242
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
25-547 |
5.11e-06 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 51.20 E-value: 5.11e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 25 KQMLKNETESDIIadlRKKLHRAKKEKL-EMTTKHNAELSSYESQIARLRSEVEKGEALRQRLeydlavARKEAGLGRRA 103
Cdd:TIGR00606 279 KQMEKDNSELELK---MEKVFQGTDEQLnDLYHNHQRTVREKERELVDCQRELEKLNKERRLL------NQEKTELLVEQ 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 104 AEERLaEAQRIQERLCAQNSELQGKANeiektfqisqekwREECRRFEHDLE---ERDNIIQNCNQEYESLMQEKTRLQK 180
Cdd:TIGR00606 350 GRLQL-QADRHQEHIRARDSLIQSLAT-------------RLELDGFERGPFserQIKNFHTLVIERQEDEAKTAAQLCA 415
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 181 TLQEILEKHEQEKTELesRVRETALGE-FRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTS 259
Cdd:TIGR00606 416 DLQSKERLKQEQADEI--RDEKKGLGRtIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKN 493
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 260 ELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQL-------RIRDLEGALQVEKASQAEAVADLE 332
Cdd:TIGR00606 494 SLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKdkmdkdeQIRKIKSRHSDELTSLLGYFPNKK 573
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 333 MIKNEFKEVEsayeREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRL------QYNEKSCGELQEELV 406
Cdd:TIGR00606 574 QLEDWLHSKS----KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIE 649
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 407 MAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDyqnKLEDASNELNNINDAKE 486
Cdd:TIGR00606 650 KSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD---KLKSTESELKKKEKRRD 726
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568926833 487 KTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHC 547
Cdd:TIGR00606 727 EMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
46-286 |
5.42e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 51.19 E-value: 5.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 46 RAKKEKLEmttkhnAELSSYESQIARLRSEVEKGEALRQrleydlAVARKEAGLGRR-AAEERLAEAQRIQERLCAQNSE 124
Cdd:PRK02224 474 RERVEELE------AELEDLEEEVEEVEERLERAEDLVE------AEDRIERLEERReDLEELIAERRETIEEKRERAEE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 125 LQGKANEIEKtfqiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKtLQEILEKHEQEKTELES-RVRET 203
Cdd:PRK02224 542 LRERAAELEA----EAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLER-IRTLLAAIADAEDEIERlREKRE 616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 204 ALGEFRLQTEEWEAERREL--QLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSE----------LEFSTQREERL 271
Cdd:PRK02224 617 ALAELNDERRERLAEKRERkrELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELREErddlqaeigaVENELEELEEL 696
|
250
....*....|....*
gi 568926833 272 RKEFEATTLRVRKLE 286
Cdd:PRK02224 697 RERREALENRVEALE 711
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
102-568 |
9.99e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.04 E-value: 9.99e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 102 RAAEERLAeaqrIQERLCAQNSELQGKANEIEktfQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTrlqkT 181
Cdd:PRK02224 170 RASDARLG----VERVLSDQRGSLDQLKAQIE---EKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRD----E 238
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 182 LQEILEKHEQEKTELEsrvretalgefrlqteEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSEL 261
Cdd:PRK02224 239 ADEVLEEHEERREELE----------------TLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 262 EFSTQREERLRKEFEATTLRVRKLEENIEAERAAhlESKFNSEIIQLRirdlegalqvekasqaEAVADLEMIKNEFKEV 341
Cdd:PRK02224 303 GLDDADAEAVEARREELEDRDEELRDRLEECRVA--AQAHNEEAESLR----------------EDADDLEERAEELREE 364
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 342 ESAYEREKQNTQEScaklnLLEREyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL---VET 418
Cdd:PRK02224 365 AAELESELEEAREA-----VEDRR--EEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELeatLRT 437
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 419 CENNVRELESIL--------GSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASnELNNINDAKEKTSN 490
Cdd:PRK02224 438 ARERVEEAEALLeagkcpecGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEE 516
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926833 491 ELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELqnvlhcwEKEKACAAQCESELQKLSQA 568
Cdd:PRK02224 517 RREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEA-------EEAREEVAELNSKLAELKER 587
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
61-551 |
1.16e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 50.12 E-value: 1.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 61 ELSSYESQIARLRSEVEKGEALR----QRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTF 136
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYedkiEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 137 QISQEKWREEC------RRFEHDLEERDNIIQNCNQEYESLMQE-KTRLQKTLQEILEKHEQ-EKTELESRVRETALGEF 208
Cdd:pfam15921 398 EQNKRLWDRDTgnsitiDHLRRELDDRNMEVQRLEALLKAMKSEcQGQMERQMAAIQGKNESlEKVSSLTAQLESTKEML 477
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 209 RLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLlrrqTSELEFSTQREERLRKEFEattlRVRKLEEN 288
Cdd:pfam15921 478 RKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEATNAEITKL----RSRVDLKLQELQHLKNEGD----HLRNVQTE 549
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 289 IEAERAAHLESKFNSEIIQLRIRDL----------EGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAK 358
Cdd:pfam15921 550 CEALKLQMAEKDKVIEILRQQIENMtqlvgqhgrtAGAMQVEKAQLEKEINDRRLELQEFKILKDKKDAKIRELEARVSD 629
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 359 LNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQ 438
Cdd:pfam15921 630 LELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLKMQLKSAQSELE 709
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 439 WTSGVHKDKDKPPSFSVVLE-------TLRRTLTD-YQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQ 510
Cdd:pfam15921 710 QTRNTLKSMEGSDGHAMKVAmgmqkqiTAKRGQIDaLQSKIQFLEEAMTNANKEKHFLKEEKNKLSQELSTVATEKNKMA 789
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 568926833 511 DKLTEVHKELSHLRAKCADREALI--TSLK-VELQNVLHCWEKE 551
Cdd:pfam15921 790 GELEVLRSQERRLKEKVANMEVALdkASLQfAECQDIIQRQEQE 833
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
39-291 |
2.17e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.30 E-value: 2.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 39 DLRKKLHRAK-KEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARK---------------------- 95
Cdd:TIGR02169 215 ALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQlleelnkkikdlgeeeqlrvke 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 96 -------EAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqekwREECRRFEHDLEERDNIIQNCNQEY 168
Cdd:TIGR02169 295 kigeleaEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL--------EREIEEERKRRDKLTEEYAELKEEL 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 169 ESLMQEKTRLQKTLQEILEKHEQEKTELESRVREtaLGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHM 248
Cdd:TIGR02169 367 EDLRAELEEVDKEFAETRDELKDYREKLEKLKRE--INELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568926833 249 DCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA 291
Cdd:TIGR02169 445 DKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSK 487
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
68-410 |
2.35e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.98 E-value: 2.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 68 QIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEIEKTFQISQEKwrEEC 147
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE--ARKAEDAKKAEAVKKAEEAKKDA--EEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 148 RRFEhdlEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLiVQ 227
Cdd:PTZ00121 1243 KKAE---EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK-AD 1318
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 228 EQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQ 307
Cdd:PTZ00121 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 308 LRIRDLEGALQVEKASQAEAVADleMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKViiDL 387
Cdd:PTZ00121 1399 KAEEDKKKADELKKAAAAKKKAD--EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA--DE 1474
|
330 340
....*....|....*....|...
gi 568926833 388 SKRLQYNEKSCGELQEELVMAKK 410
Cdd:PTZ00121 1475 AKKKAEEAKKADEAKKKAEEAKK 1497
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
990-1246 |
2.49e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 48.90 E-value: 2.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKsqsLQTQLNEFKHSKLITHEKFESACEELNNALLR----EQQAQML 1065
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEisrlEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1066 LNEQAQ---QLQELNYRLELHSS-------EEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1135
Cdd:TIGR02168 308 RERLANlerQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1136 IRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLQGGPEVVacQAMIKS 1215
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL--EEALEE 465
|
250 260 270
....*....|....*....|....*....|.
gi 568926833 1216 FMDVYQLASARISTLEKEMTSHRSHIATLKS 1246
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
39-574 |
4.42e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 4.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 39 DLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERL 118
Cdd:PTZ00121 1234 EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEE 1313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 119 CAQNSELQGKANEIEKTFQISQEKWREECRRFE---HDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTE 195
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEaakAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 196 LESRVRETALGEFRLQTEEWEAERR----------------ELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTS 259
Cdd:PTZ00121 1394 DEAKKKAEEDKKKADELKKAAAAKKkadeakkkaeekkkadEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKAD 1473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 260 ELEFSTQ---REERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKN 336
Cdd:PTZ00121 1474 EAKKKAEeakKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKK 1553
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 337 EfKEVESAYEREKQNTQEScaklnllEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLV 416
Cdd:PTZ00121 1554 A-EELKKAEEKKKAEEAKK-------AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEEL 1625
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 417 ETCENNVRELESILGSFSVSAQWTSGVHKDKDKPpsfSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNElDSTK 496
Cdd:PTZ00121 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEEN---KIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE-AEEA 1701
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 497 QKIETHIKNTKELQDKLTEVHK--ELSHLRAKCADREALITSLKVELQNVLhcwEKEKACAAQCESELQKLSQAFQKDSE 574
Cdd:PTZ00121 1702 KKAEELKKKEAEEKKKAEELKKaeEENKIKAEEAKKEAEEDKKKAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
144-809 |
8.05e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 47.37 E-value: 8.05e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 144 REECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVREtaLGEFRLQTEEWEAERR 220
Cdd:PRK03918 178 IERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELreeLEKLEKEVKELEELKEE--IEELEKELESLEGSKR 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 221 ELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdllRRQTSELEFSTQREERLRKEFEATTLRVRKLEEnieaeRAAHLESK 300
Cdd:PRK03918 256 KLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIEK-----RLSRLEEE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 301 FNSeiIQLRIRDLEgalqvekasqaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 380
Cdd:PRK03918 323 ING--IEERIKELE-----------EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 381 KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLvetcENNVRELESILGSFSVSAQWTSGVHKdkdkppsfsvvletl 460
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHR--------------- 450
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 461 RRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--ETHIKNTKELQDKLTEVHKELSHLRAKCADREA------ 532
Cdd:PRK03918 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLkkESELIKLKELAEQLKELEEKLKKYNLEELEKKAeeyekl 530
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 533 --LITSLKVELQNVLHCWEKEKACaaqcESELQKLSQAFqKDSEEKLTFLHTLYQHLVAGCVlikqpegmldkfswselc 610
Cdd:PRK03918 531 keKLIKLKGEIKSLKKELEKLEEL----KKKLAELEKKL-DELEEELAELLKELEELGFESV------------------ 587
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 611 avlqENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQ---EDTFNKVAEQIKAQESCwQKQKKELEFQYSEllle 687
Cdd:PRK03918 588 ----EELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEeelDKAFEELAETEKRLEEL-RKELEELEKKYSE---- 658
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 688 vqrraQKFQEIAEKNSEKLNRIETSHEQLVRENSHFKTTLSRTqreqtcllaacalmagalcplysrscalstqrDFLQE 767
Cdd:PRK03918 659 -----EEYEELREEYLELSRELAGLRAELEELEKRREEIKKTL--------------------------------EKLKE 701
|
650 660 670 680
....*....|....*....|....*....|....*....|..
gi 568926833 768 QVNSLELFKLEIRTLAQALSAVdekkqEEAKTKKKTFKGLVR 809
Cdd:PRK03918 702 ELEEREKAKKELEKLEKALERV-----EELREKVKKYKALLK 738
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
66-318 |
9.14e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 47.22 E-value: 9.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 66 ESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQErLCAQNSELQGKANEIEktfQISQEkwRE 145
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLEALEAE----LDALQERREALQRLAE-YSWDEIDVASAEREIA---ELEAE--LE 678
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 146 ECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTEL-ESRVRETALGEFRLQTEEWEAERRELQL 224
Cdd:COG4913 679 RLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELdELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 225 IVQEQDSAV-QSMQKKVEQLEAEHMDCSDLLRRQTSE---------------LEFSTQREERLRK-------EFEAttlR 281
Cdd:COG4913 759 LGDAVERELrENLEERIDALRARLNRAEEELERAMRAfnrewpaetadldadLESLPEYLALLDRleedglpEYEE---R 835
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 568926833 282 VRK-LEENIEAERaAHLESKFNSEI--IQLRIRDLEGALQ 318
Cdd:COG4913 836 FKElLNENSIEFV-ADLLSKLRRAIreIKERIDPLNDSLK 874
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
82-340 |
1.84e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.06 E-value: 1.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 82 LRQRLEYDLAVARKEAGLGRRAAEERLAE-------------AQRIQER---LCAQN-SELQGKANEIEKTFQISQEKwr 144
Cdd:COG4913 510 LRGRLVYERVRTGLPDPERPRLDPDSLAGkldfkphpfrawlEAELGRRfdyVCVDSpEELRRHPRAITRAGQVKGNG-- 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 145 eecRRFEHDLE---ERDNIIQNCNQEY-ESLMQEKTRLQKTLQEI---LEKHEQEKTELESRVRE-TALGEFRLQTEEWE 216
Cdd:COG4913 588 ---TRHEKDDRrriRSRYVLGFDNRAKlAALEAELAELEEELAEAeerLEALEAELDALQERREAlQRLAEYSWDEIDVA 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 217 AERRELQLIVQEQ------DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE 290
Cdd:COG4913 665 SAEREIAELEAELerldasSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 568926833 291 AERAAHLESKFNSEIIQLRIRD----LEGALQVEKASQAEAVADLEMIKNEFKE 340
Cdd:COG4913 745 LELRALLEERFAAALGDAVERElrenLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-735 |
1.93e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 46.29 E-value: 1.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEI----EKTFQIS 139
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAED--AKKAEAVKKAEEAkkdaEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 140 QEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRlqkTLQEILEKHEQEKTELESRVRET-ALGEFRLQTEEWEAE 218
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK---KAEEKKKADEAKKAEEKKKADEAkKKAEEAKKADEAKKK 1323
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 219 RRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTlrvRKLEENIEAERAAHLE 298
Cdd:PTZ00121 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAK---KKAEEKKKADEAKKKA 1400
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 299 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIE 378
Cdd:PTZ00121 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAE 1480
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 379 DQKKViIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESilgsfSVSAQWTSGVHKDKDKPPSFSV-VL 457
Cdd:PTZ00121 1481 EAKKA-DEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKK-----AEEAKKADEAKKAEEKKKADELkKA 1554
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 458 ETLRRtlTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCAD-REALITS 536
Cdd:PTZ00121 1555 EELKK--AEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEElKKAEEEK 1632
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 537 LKVELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKltflhtlyqhlvagcvlikqpegmlDKFSWSELCAVLQEN 616
Cdd:PTZ00121 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE-------------------------DKKKAEEAKKAEEDE 1687
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 617 VDALIADLNRANEKiSHLEYICKNKSDTMRELQQTQEDtfnKVAEQIKAQEScwqKQKKELEFQYSELLLEVQRRAQKFQ 696
Cdd:PTZ00121 1688 KKAAEALKKEAEEA-KKAEELKKKEAEEKKKAEELKKA---EEENKIKAEEA---KKEAEEDKKKAEEAKKDEEEKKKIA 1760
|
650 660 670
....*....|....*....|....*....|....*....
gi 568926833 697 EIAEKNSEKLNRIETSHEQLVRENSHFKTTLSRTQREQT 735
Cdd:PTZ00121 1761 HLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKK 1799
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
468-1248 |
2.08e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.82 E-value: 2.08e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 468 QNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKnTKELQDKLTEVHKELSHLRAKCADREalITSLKVELQNVLHC 547
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAER-YKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 548 WEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVDALIADLNRA 627
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 628 NEKISHLEyickNKSDTMRE---LQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI---AEK 701
Cdd:TIGR02168 322 EAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 702 NSEKLNRIETSHEQLVREnshfkttLSRTQREQTCLLAAcaLMAGALCPLYSRSCALSTQRDFLQEQVNSLELFKLEIRT 781
Cdd:TIGR02168 398 LNNEIERLEARLERLEDR-------RERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 782 -LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES--------CKEGI 845
Cdd:TIGR02168 469 eLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaieaaLGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 846 GMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----ICGHLLI 912
Cdd:TIGR02168 548 QAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyLLGGVLV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 913 gaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYG-----LCSHIPIMKSTAA-LQ 983
Cdd:TIGR02168 628 ----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRreieeLEEKIEELEEKIAeLE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 984 KQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHSKLITHEKFEsacEELNNALLREQQAQ 1063
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE---AEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1064 MLLNEQAQQLQELNYRLELHSSEeadkNQTLGEAVKSLSEAKMELRRKDQSLRQ-----------LNRHLTQLEQDKRRL 1132
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAELTLLNEEAANLRErleslerriaaTERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1133 EENI--------------RDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAM- 1197
Cdd:TIGR02168 851 SEDIeslaaeieeleeliEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELr 930
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 568926833 1198 -EGLQGGPEVVACQAMiKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL 1248
Cdd:TIGR02168 931 lEGLEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
308-577 |
2.44e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.83 E-value: 2.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 308 LRIRDLEGALQVEKASqaeAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQN----------KKLNEEI 377
Cdd:TIGR02169 677 QRLRERLEGLKRELSS---LQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKerleeleedlSSLEQEI 753
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 378 EDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAF-LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFsvv 456
Cdd:TIGR02169 754 ENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHsRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEY--- 830
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 457 LETLRRTLTDYQNKLEDASN----ELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREA 532
Cdd:TIGR02169 831 LEKEIQELQEQRIDLKEQIKsiekEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 568926833 533 LITSLKvELQNVLhcweKEKACAAQCE-SELQKLSQAFQKDSEEKL 577
Cdd:TIGR02169 911 QIEKKR-KRLSEL----KAKLEALEEElSEIEDPKGEDEEIPEEEL 951
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
46-277 |
2.59e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.68 E-value: 2.59e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 46 RAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraAEERLAEAQRIQERLCAQNSEL 125
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE------LRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 126 QGKANEIEKtfQISQEKWREEcrrfeHDLEERdniIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVREtal 205
Cdd:COG4913 322 REELDELEA--QIRGNGGDRL-----EQLERE---IERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAE--- 388
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568926833 206 geFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHmdcSDLLRRQTSelefSTQREERLRKEFEA 277
Cdd:COG4913 389 --AAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEI---ASLERRKSN----IPARLLALRDALAE 451
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
17-503 |
2.64e-04 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 45.81 E-value: 2.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 17 LKNASLDVKQmlKNETESDIiADLRKKLHRAKKEklemTTKHNAELSSYESQIARLrsevekgealrqrleYDLAVARKE 96
Cdd:TIGR01612 1303 IREKSLKIIE--DFSEESDI-NDIKKELQKNLLD----AQKHNSDINLYLNEIANI---------------YNILKLNKI 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 97 AGLGRRAAEErlaeAQRIQERLCAQNSELQGKANEIEKtfqISQEKWREECR-RFEHDLEERD--NIIQNCNQEYESLMQ 173
Cdd:TIGR01612 1361 KKIIDEVKEY----TKEIEENNKNIKDELDKSEKLIKK---IKDDINLEECKsKIESTLDDKDidECIKKIKELKNHILS 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 174 EKTRLQKTLQEILEKHEQektelesrvretalgeFRLQTEEWEAERRELQLIVQEQ-DSAVQSMQKKVEQLEaEHMDCSD 252
Cdd:TIGR01612 1434 EESNIDTYFKNADENNEN----------------VLLLFKNIEMADNKSQHILKIKkDNATNDHDFNINELK-EHIDKSK 1496
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 253 LLRRQTSELEFSTQREERLRKEF--EATTLRVRKLEENIEAERAahlESKFNSEIIQLRIRDLEG--ALQVEKASQaeav 328
Cdd:TIGR01612 1497 GCKDEADKNAKAIEKNKELFEQYkkDVTELLNKYSALAIKNKFA---KTKKDSEIIIKEIKDAHKkfILEAEKSEQ---- 1569
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 329 aDLEMIKNEFKEVEsayerekqntqescaklnllerEYFSQNKKLNeeiedqkKVIIDLSKRLQYNEKSCGELQEelvMA 408
Cdd:TIGR01612 1570 -KIKEIKKEKFRIE----------------------DDAAKNDKSN-------KAAIDIQLSLENFENKFLKISD---IK 1616
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 409 KKHQAFLVETcennvRELESILGSFSVSAQWTSgVHKDKDKPPSFSVVLETLRrtltDYQNKLEDASNELNNINDAKEKT 488
Cdd:TIGR01612 1617 KKINDCLKET-----ESIEKKISSFSIDSQDTE-LKENGDNLNSLQEFLESLK----DQKKNIEDKKKELDELDSEIEKI 1686
|
490
....*....|....*
gi 568926833 489 SNELDSTKQKIETHI 503
Cdd:TIGR01612 1687 EIDVDQHKKNYEIGI 1701
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
97-309 |
2.97e-04 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 44.75 E-value: 2.97e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 97 AGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtfqiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKT 176
Cdd:COG4942 11 LALAAAAQADAAAEAEAELEQLQQEIAELEKELAALKK----EEKALLKQLAALERRIAALARRIRALEQELAALEAELA 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 177 RLQKTLQEILEKHEQEKTELESRV-------------------------------------RETALGEFRLQTEEWEAER 219
Cdd:COG4942 87 ELEKEIAELRAELEAQKEELAELLralyrlgrqpplalllspedfldavrrlqylkylapaRREQAEELRADLAELAALR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 220 RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES 299
Cdd:COG4942 167 AELEAERAELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
250
....*....|
gi 568926833 300 KFNSEIIQLR 309
Cdd:COG4942 247 GFAALKGKLP 256
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
41-542 |
4.88e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 44.71 E-value: 4.88e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 41 RKKLHRAKKEKLE----MTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraaeERLAEAQRIQE 116
Cdd:pfam05483 210 RLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKA--------NQLEEKTKLQD 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 117 RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTEL 196
Cdd:pfam05483 282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 197 ESRVRETalgefRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQRE---ERLRK 273
Cdd:pfam05483 362 EELLRTE-----QQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEkiaEELKG 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 274 EFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEV---ESAYEREKQ 350
Cdd:pfam05483 437 KEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELtqeASDMTLELK 516
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 351 NTQESCAKLNllereyfSQNKKLNEEIEDQKKVIIDLSKRLQYnekscgeLQEELVMAKKHQAFLVETCENNVRELE-SI 429
Cdd:pfam05483 517 KHQEDIINCK-------KQEERMLKQIENLEEKEMNLRDELES-------VREEFIQKGDEVKCKLDKSEENARSIEyEV 582
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 430 LGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKN-TKE 508
Cdd:pfam05483 583 LKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNyQKE 662
|
490 500 510
....*....|....*....|....*....|....*
gi 568926833 509 LQDKLTEVHKELSHL-RAKCADREALITSLKVELQ 542
Cdd:pfam05483 663 IEDKKISEEKLLEEVeKAKAIADEAVKLQKEIDKR 697
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
1023-1303 |
5.01e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 44.66 E-value: 5.01e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1023 KSQSLQTQLNEFKHSKLITHekFESACEELNNALLREQQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLS 1102
Cdd:TIGR02168 214 RYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1103 EAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDkecvanhmrtienmLHKVRDQIslsrtaatrnd 1182
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE--------------LAELEEKL----------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1183 ftlqlpklhletfamEGLQggPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL--HTACLRENESLQ 1260
Cdd:TIGR02168 347 ---------------EELK--EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIasLNNEIERLEARL 409
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568926833 1261 SMGSRDHSNLSVPSRAAAPMDTVGDLLPLQAELDTTYTFLKET 1303
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
304-578 |
5.30e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 44.54 E-value: 5.30e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 304 EIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE---EIEDQ 380
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARleqDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 381 KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvVLETL 460
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE------AEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 461 RRTLTDYQNKLEDASNELNNINDAKEktsnELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVE 540
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270
....*....|....*....|....*....|....*...
gi 568926833 541 LQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLT 578
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
126-570 |
6.04e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 6.04e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 126 QGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETAL 205
Cdd:COG4717 62 QGRKPELNLKELKELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLYQELEALEAEL 141
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 206 GEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS----DLLRRQTSELEFSTQREERLRKEFEATTLR 281
Cdd:COG4717 142 AELPERLEELEERLEELRELEEELEELEAELAELQEELEELLEQLSlateEELQDLAEELEELQQRLAELEEELEEAQEE 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 282 VRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEF--------KEVESAYEREKQNTQ 353
Cdd:COG4717 222 LEELEEELEQLENELEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVlflvlgllALLFLLLAREKASLG 301
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 354 ESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLveTCENNVRELESILGSF 433
Cdd:COG4717 302 KEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEEL--QLEELEQEIAALLAEA 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 434 SVS--AQWTSGVHKDKDKppsfsvvlETLRRTLTDYQNKLEDASNELNNINDAKEKTS--NELDSTKQKIETHIKNTKEL 509
Cdd:COG4717 380 GVEdeEELRAALEQAEEY--------QELKEELEELEEQLEELLGELEELLEALDEEEleEELEELEEELEELEEELEEL 451
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568926833 510 QDKLTEVHKELSHLRA--KCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQAFQ 570
Cdd:COG4717 452 REELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREERL 514
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
38-273 |
7.81e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 44.06 E-value: 7.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 38 ADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEAlrQRLEYDlavarkEAGLGRRAAE-ERLAEAQRIQE 116
Cdd:pfam12128 286 AELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALED--QHGAFL------DADIETAAADqEQLPSWQSELE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 117 RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEER-DNIIQNCNQEYESlmqEKTRLQKTLQEILEKHEQEKTE 195
Cdd:pfam12128 358 NLEERLKALTGKHQDVTAKYNRRRSKIKEQNNRDIAGIKDKlAKIREARDRQLAV---AEDDLQALESELREQLEAGKLE 434
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 196 L--ESRVRETALGEFRLQTEEWEAErRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdLLRRQTSELEFSTQREERLRK 273
Cdd:pfam12128 435 FneEEYRLKSRLGELKLRLNQATAT-PELLLQLENFDERIERAREEQEAANAE------VERLQSELRQARKRRDQASEA 507
|
|
| Borrelia_P83 |
pfam05262 |
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins. |
69-246 |
9.87e-04 |
|
Borrelia P83/100 protein; This family consists of several Borrelia P83/P100 antigen proteins.
Pssm-ID: 114011 [Multi-domain] Cd Length: 489 Bit Score: 43.45 E-value: 9.87e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 69 IARLRSEVEKGEALRQRLeydLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECR 148
Cdd:pfam05262 183 VEALREDNEKGVNFRRDM---TDLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKN 259
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 149 RFE----HDLEERDNIIQNCNQEYESLMQEktrLQKTLQEILEKHEQEKTELESRVREtalgefrlqtEEWEAERRELQL 224
Cdd:pfam05262 260 LPKpadtSSPKEDKQVAENQKREIEKAQIE---IKKNDEEALKAKDHKAFDLKQESKA----------SEKEAEDKELEA 326
|
170 180
....*....|....*....|..
gi 568926833 225 IVQEQDSAvQSMQKKVEQLEAE 246
Cdd:pfam05262 327 QKKREPVA-EDLQKTKPQVEAQ 347
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-410 |
1.18e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 1.18e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 57 KHNAELSSYESQIaRLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE-AQRIQERLCAQNSELQGKANEIEKT 135
Cdd:PTZ00121 1085 EDNRADEATEEAF-GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 136 FQISQEKWREECRRFEHdleerdniiqncnqeyeslmqektrlQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEew 215
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEA--------------------------ARKAEEVRKAEELRKAEDARKAEAARKAEEERKAE-- 1215
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 216 EAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRR-QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERA 294
Cdd:PTZ00121 1216 EARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEA 1295
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 295 AHLESKFNSEIIQLRIRDLEGALQVEKASQaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLN 374
Cdd:PTZ00121 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAE-EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 568926833 375 EEIE---------DQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 410
Cdd:PTZ00121 1375 EAKKkadaakkkaEEKKKADEAKKKAEEDKKKADELKKAAAAKKK 1419
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
19-544 |
1.25e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 43.51 E-value: 1.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 19 NASLDVKQMLKNETESdIIADLRKKLHRAKKEKLEMT---TKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARK 95
Cdd:TIGR02168 357 EAELEELEAELEELES-RLEELEEQLETLRSKVAQLElqiASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL 435
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 96 EAglgrraAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREEcRRFEHDLEERDNIIQNCNQEYES----- 170
Cdd:TIGR02168 436 KE------LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAA-ERELAQLQARLDSLERLQENLEGfsegv 508
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 171 --LMQEKTRLQKTLQEILEKHEQEKtELESRVrETALGEfRLQ---TEEWEAERRELQLIVQEQDSAVQSM---QKKVEQ 242
Cdd:TIGR02168 509 kaLLKNQSGLSGILGVLSELISVDE-GYEAAI-EAALGG-RLQavvVENLNAAKKAIAFLKQNELGRVTFLpldSIKGTE 585
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 243 LEAEHMDCSDLLRRQTSELEFSTQREERLRKEFE------------ATTLRVRKLEEniEAERAAHLE------------ 298
Cdd:TIGR02168 586 IQGNDREILKNIEGFLGVAKDLVKFDPKLRKALSyllggvlvvddlDNALELAKKLR--PGYRIVTLDgdlvrpggvitg 663
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 299 --SKFNSEIIQLR--IRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKK-- 372
Cdd:TIGR02168 664 gsAKTNSSILERRreIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEve 743
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 373 -LNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSvsaqwtsgvhkdkdkpp 451
Cdd:TIGR02168 744 qLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALD----------------- 806
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 452 SFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADRE 531
Cdd:TIGR02168 807 ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLE 886
|
570
....*....|...
gi 568926833 532 ALITSLKVELQNV 544
Cdd:TIGR02168 887 EALALLRSELEEL 899
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
52-520 |
1.37e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 43.35 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 52 LEMTTKHNAELSSYESQIARLRSEVEKGEALRQR---LEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNS---EL 125
Cdd:PRK01156 248 EDMKNRYESEIKTAESDLSMELEKNNYYKELEERhmkIINDPVYKNRNYINDYFKYKNDIENKKQILSNIDAEINkyhAI 327
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 126 QGKANEIEKTFQISQEKWREecrrfehdLEERDNIIQNCnQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRVRETaL 205
Cdd:PRK01156 328 IKKLSVLQKDYNDYIKKKSR--------YDDLNNQILEL-EGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEI-L 397
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 206 GEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDcsdlLRRQTSELE-----------FSTQREERLRKE 274
Cdd:PRK01156 398 KIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDE----LSRNMEMLNgqsvcpvcgttLGEEKSNHIINH 473
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 275 FEATTLR----VRKLEENIEA--ERAAHLEsKFNSEIIQLRIRDLEGALQVEKASQAEaVADLEMIKNEFKEVESAYERE 348
Cdd:PRK01156 474 YNEKKSRleekIREIEIEVKDidEKIVDLK-KRKEYLESEEINKSINEYNKIESARAD-LEDIKIKINELKDKHDKYEEI 551
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 349 KQntQESCAKLNLLEREYFSQNK-----------KLNEEIEDQKKVIIDLSKRLQ-----------YNEKSCGELQEElv 406
Cdd:PRK01156 552 KN--RYKSLKLEDLDSKRTSWLNalavislidieTNRSRSNEIKKQLNDLESRLQeieigfpddksYIDKSIREIENE-- 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 407 makkhqaflVETCENNVRELESIlgsfsvsaqwtsgvhkdkdkppsfSVVLETLRRTLTDY----------QNKLEDASN 476
Cdd:PRK01156 628 ---------ANNLNNKYNEIQEN------------------------KILIEKLRGKIDNYkkqiaeidsiIPDLKEITS 674
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568926833 477 ELNNINDAKEKTSNELDST-------KQKIETHIKNTKELQDKLTEVHKEL 520
Cdd:PRK01156 675 RINDIEDNLKKSRKALDDAkanrarlESTIEILRTRINELSDRINDINETL 725
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
211-404 |
1.38e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.83 E-value: 1.38e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 211 QTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIE 290
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 291 AE--------RAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKnEFKEVESAYEREKQNTQESCAKLNLL 362
Cdd:COG4942 101 AQkeelaellRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAE-ELRADLAELAALRAELEAERAELEAL 179
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 568926833 363 EREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 404
Cdd:COG4942 180 LAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
14-710 |
1.60e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 43.04 E-value: 1.60e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 14 TQRLKNASLDVKQMLKNETESDIIADLRKKLHRAKKEKLEMTTKHNaELSSYESQIARLRSEVEKGEALRQRLEYDLAVA 93
Cdd:pfam02463 297 ELKSELLKLERRKVDDEEKLKESEKEKKKAEKELKKEKEEIEELEK-ELKELEIKREAEEEEEEELEKLQEKLEQLEEEL 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 94 RKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKA-----NEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEY 168
Cdd:pfam02463 376 LAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLelarqLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEK 455
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 169 ESLMQEKTRLQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE 246
Cdd:pfam02463 456 QELKLLKDELELKKSEDLLKETQLVKLQEQLEllLSRQKLEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLG 535
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 247 HMD--------CSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQ 318
Cdd:pfam02463 536 VAVenykvaisTAVIVEVSATADEVEERQKLVRALTELPLGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEA 615
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 319 VEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEReyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSC 398
Cdd:pfam02463 616 DEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSLEEGLAEK---SEVKASLSELTKELLEIQELQEKAESELAKE 692
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 399 GELQEELVMAKKHQAFLVETCENNVrELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNEL 478
Cdd:pfam02463 693 EILRRQLEIKKKEQREKEELKKLKL-EAEELLADRVQEAQDKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSL 771
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 479 NNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHK---ELSHLRAKCADREALITSLKVELQNVLHCWEKEKACA 555
Cdd:pfam02463 772 KEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELKeeaELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKL 851
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 556 AQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRANEKIsHLE 635
Cdd:pfam02463 852 AEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEA-EIL 930
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568926833 636 YICKNKSDTMRELQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI-AEKNSEKLNRIE 710
Cdd:pfam02463 931 LKYEEEPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLMAIEEFEEKEERYNKDeLEKERLEEEKKK 1006
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
482-712 |
1.93e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.06 E-value: 1.93e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 482 NDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVlhcwEKEKACAAQCESE 561
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL----EAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 562 LQKLSQAFQKDSEEKLTFLHTLYQHlvAGCVLIKQPEGMLDKFS----WSELCAVLQENVDALIADLNRANEKISHLEYI 637
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926833 638 CKNKSDTMRELQQTQEDTFNKVAEQIKAQESCwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETS 712
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL-EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
176-412 |
1.99e-03 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 42.65 E-value: 1.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 176 TRLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAER--RELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDL 253
Cdd:pfam02463 165 SRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKEQAKKalEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQE 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 254 LRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA---ERAAHLESKFNSEIIQLRIRDlegaLQVEKASQAEAVAD 330
Cdd:pfam02463 245 LLRDEQEEIESSKQEIEKEEEKLAQVLKENKEEEKEKKlqeEELKLLAKEEEELKSELLKLE----RRKVDDEEKLKESE 320
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 331 LEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 410
Cdd:pfam02463 321 KEKKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 400
|
..
gi 568926833 411 HQ 412
Cdd:pfam02463 401 SE 402
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
123-523 |
2.25e-03 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 42.42 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 123 SELQGKANEIEKTFQISQEKWREECRRFEHdLEERDNIIQNCNQEyeslMQEKTRLQKTLQEILEKHEQEKTELESRVRE 202
Cdd:pfam05557 30 IELEKKASALKRQLDRESDRNQELQKRIRL-LEKREAEAEEALRE----QAELNRLKKKYLEALNKKLNEKESQLADARE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 203 TA------LGEFRLQTEEWEAERRELQLIVQ-------EQDSAVQSMQKKVEQLEAEHMDCSDlLRRQTSELEFSTQREE 269
Cdd:pfam05557 105 VIsclkneLSELRRQIQRAELELQSTNSELEelqerldLLKAKASEAEQLRQNLEKQQSSLAE-AEQRIKELEFEIQSQE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 270 R---LRKEFEATTLRVRKLEENIEA--ERAAHL-ESKFNSEIIQLRIRDLEGALQVEKASQAEAVA---DLEMIKNEFKE 340
Cdd:pfam05557 184 QdseIVKNSKSELARIPELEKELERlrEHNKHLnENIENKLLLKEEVEDLKRKLEREEKYREEAATlelEKEKLEQELQS 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 341 VES--------------AYEREKQNTQEscaKLNLLEREYFSQN---------KKLNEEIEDQKKVIIDLSKRLQYNEKS 397
Cdd:pfam05557 264 WVKlaqdtglnlrspedLSRRIEQLQQR---EIVLKEENSSLTSsarqlekarRELEQELAQYLKKIEDLNKKLKRHKAL 340
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 398 CGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSG---VHKDKDKPPSFSVVLETLRRTLTDYQNKLEDA 474
Cdd:pfam05557 341 VRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAedmTQKMQAHNEEMEAQLSVAEEELGGYKQQAQTL 420
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....
gi 568926833 475 SNEL-----NNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHL 523
Cdd:pfam05557 421 ERELqalrqQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERR 474
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
977-1143 |
2.25e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 977 KSTAALQKQIFGFTQRLhaaeverRSLRLEVTEYKRTVHEMKKELDKSQS---LQTQLNEfkhskliTHEKFESACEELN 1053
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETRETLSTLSlrqLESRLAQ-------TLDQLQNAQNDLA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1054 --NALLREQQ-----AQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSLR 1116
Cdd:PRK11281 146 eyNSQLVSLQtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDLL 225
|
170 180
....*....|....*....|....*..
gi 568926833 1117 QLNRHLTQLEQDkrRLEENIRDAESAL 1143
Cdd:PRK11281 226 QKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
28-500 |
2.27e-03 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 42.31 E-value: 2.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 28 LKNETESDIIADLRKKLHRAKKEKLEMTTkhnaELSSYESQIARLRSEVEKGEALRQRLEydlavarkeaglgrraaeer 107
Cdd:TIGR04523 300 LNNQKEQDWNKELKSELKNQEKKLEEIQN----QISQNNKIISQLNEQISQLKKELTNSE-------------------- 355
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 108 lAEAQRIQERLCAQNSELQGKANEIEKTFQiSQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILE 187
Cdd:TIGR04523 356 -SENSEKQRELEEKQNEIEKLKKENQSYKQ-EIKNLESQINDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKEIERLKE 433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 188 KHEQEKTELESRVRETAlgEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQR 267
Cdd:TIGR04523 434 TIIKNNSEIKDLTNQDS--VKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKE-------LKSKEKELKKLNEE 504
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 268 EERLRKEFEATTLRVRKLEENIEaeraahlesKFNSEI--IQLRIRDLEGalqvekasqaeavadlEMIKNEFKEVESAY 345
Cdd:TIGR04523 505 KKELEEKVKDLTKKISSLKEKIE---------KLESEKkeKESKISDLED----------------ELNKDDFELKKENL 559
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 346 EREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLV-------ET 418
Cdd:TIGR04523 560 EKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKDLIKEIEEKEKKISSLEKELEKAKKENEKLSsiiknikSK 639
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 419 CENNVRELESILGSF-SVSAQWTSGVHKDKD----------------KPPSFSVVLETLRRTLTDYQNKLEDASNELNNI 481
Cdd:TIGR04523 640 KNKLKQEVKQIKETIkEIRNKWPEIIKKIKEsktkiddiielmkdwlKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKE 719
|
490
....*....|....*....
gi 568926833 482 NDAKEKTSNELDSTKQKIE 500
Cdd:TIGR04523 720 LKKLDEFSKELENIIKNFN 738
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
14-587 |
2.33e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.33e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 14 TQRLKNASLDVKQMLKNETESdiIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYD---- 89
Cdd:TIGR00618 200 TLRSQLLTLCTPCMPDTYHER--KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRaqea 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 90 -LAVARKEAGLGRRAAE--ERLAEAQRIQERLCAQNSELQGKANEIEKTFQ-----ISQEKWREECRRFEHDLEERDNII 161
Cdd:TIGR00618 278 vLEETQERINRARKAAPlaAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMkraahVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 162 QNCNQE----YESLMQEKTRLQ--KTLQEILEKHEQE----KTELESRVRETALGEFRLQTE----------EWEAERRE 221
Cdd:TIGR00618 358 RDAHEVatsiREISCQQHTLTQhiHTLQQQKTTLTQKlqslCKELDILQREQATIDTRTSAFrdlqgqlahaKKQQELQQ 437
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 222 LQLIVQEQDSAVQSMQKKVEQLEAEHMDCS-DLLRRQTSELEFSTQREERLRKEFEATTLRVRKLE---ENIEAERAAHL 297
Cdd:TIGR00618 438 RYAELCAAAITCTAQCEKLEKIHLQESAQSlKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEPcplCGSCIHPNPAR 517
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 298 ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAK-----------LNLLER-- 364
Cdd:TIGR00618 518 QDIDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCdnrskedipnlQNITVRlq 597
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 365 ---------------EYFSQNKKLNEEIEDQKKVIID--LSKRLQYNEKSCGELQEELVMAKKHQAFLV------ETCEN 421
Cdd:TIGR00618 598 dlteklseaedmlacEQHALLRKLQPEQDLQDVRLHLqqCSQELALKLTALHALQLTLTQERVREHALSirvlpkELLAS 677
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 422 NVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDS---TKQK 498
Cdd:TIGR00618 678 RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIENASSSLGSDLAAREDALNQSLKELMHqarTVLK 757
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 499 IETHIKNTKELQ--------DKLTEVHKELSHLRAKCADREALITSLKVELQNvlHCWEKEKACAAQCESELQKLSQAFQ 570
Cdd:TIGR00618 758 ARTEAHFNNNEEvtaalqtgAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQ--EIPSDEDILNLQCETLVQEEEQFLS 835
|
650
....*....|....*..
gi 568926833 571 KdSEEKLTFLHTLYQHL 587
Cdd:TIGR00618 836 R-LEEKSATLGEITHQL 851
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
50-160 |
2.44e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 2.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 50 EKLEMTTKHNAELssyESQIARLRSEVEKGEALRQRLEYDLA-VARKEAGLGRRAAE--ERLAEAQRIQER-------LC 119
Cdd:PRK09039 67 DLLSLERQGNQDL---QDSVANLRASLSAAEAERSRLQALLAeLAGAGAAAEGRAGElaQELDSEKQVSARalaqvelLN 143
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568926833 120 AQNSELQGKANEIEKTFQISQEKWREECRRFEhDLEERDNI 160
Cdd:PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIA-DLGRRLNV 183
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
53-379 |
2.62e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 42.47 E-value: 2.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 53 EMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQRIQERLCAQNSELQGKANEI 132
Cdd:pfam01576 349 EMRQKHTQALEELTEQLEQAKRNKANLEKAKQALESENAELQAEL----RTLQQAKQDSEHKRKKLEGQLQELQARLSES 424
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 133 EKTFQISQE---KWREECRRFEHDLEERDNIIQNCNQEYESLmqeKTRLQKTlQEILEKHEQEKTELESRVR--ETALGE 207
Cdd:pfam01576 425 ERQRAELAEklsKLQSELESVSSLLNEAEGKNIKLSKDVSSL---ESQLQDT-QELLQEETRQKLNLSTRLRqlEDERNS 500
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 208 FRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEE 287
Cdd:pfam01576 501 LQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALEEGKKRLQRELEALTQQLEEKAAAYDKLEKTKNRLQQ 580
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 288 NIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEReyf 367
Cdd:pfam01576 581 ELDDLLVDLDHQRQLVSNLEKKQKKFDQMLAEEKAISARYAEERDRAEAEAREKETRALSLARALEEALEAKEELER--- 657
|
330
....*....|..
gi 568926833 368 sQNKKLNEEIED 379
Cdd:pfam01576 658 -TNKQLRAEMED 668
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
40-279 |
2.73e-03 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 42.03 E-value: 2.73e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 40 LRKKLHRAKKEKLeMTTKHNAELSSYESQIARLRSEVEKGealRQRleydlAVARKEAGLGRRAAEERLAEAQRIQ--ER 117
Cdd:pfam17380 394 VRQELEAARKVKI-LEEERQRKIQQQKVEMEQIRAEQEEA---RQR-----EVRRLEEERAREMERVRLEEQERQQqvER 464
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 118 LCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERdniiqncnqeyESLMQEKTRLQKTLQEILEkhEQEKTELE 197
Cdd:pfam17380 465 LRQQEEERKRKKLELEKEKRDRKRAEEQRRKILEKELEER-----------KQAMIEEERKRKLLEKEME--ERQKAIYE 531
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 198 SRVRETALGEFRLQTEEWEAERRELQL-IVQEQDSAVQSMQKKVEQLeaehmdcsdllrRQTSElefstqrEERLRKEFE 276
Cdd:pfam17380 532 EERRREAEEERRKQQEMEERRRIQEQMrKATEERSRLEAMEREREMM------------RQIVE-------SEKARAEYE 592
|
...
gi 568926833 277 ATT 279
Cdd:pfam17380 593 ATT 595
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
61-222 |
2.78e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.78e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 61 ELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQRIQERLCAQNSELQGKANEIEKtfQISQ 140
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRLELEIEEVEARIKKYEE--QLGN 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 141 EKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEILEKHEQEKTELESRV--RETALGEFRLQTEEWEAE 218
Cdd:COG1579 85 VRNNKEYEALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKaeLDEELAELEAELEELEAE 164
|
....
gi 568926833 219 RREL 222
Cdd:COG1579 165 REEL 168
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
28-244 |
3.00e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.25 E-value: 3.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 28 LKNETESDIIADLRKKLHRAKKEKLEMTtKHNAELSSYESQIARLRSEVEKGEALRQrlEYDLAVARKE---------AG 98
Cdd:PRK04863 887 LADETLADRVEEIREQLDEAEEAKRFVQ-QHGNALAQLEPIVSVLQSDPEQFEQLKQ--DYQQAQQTQRdakqqafalTE 963
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 99 LGRRAAEERLAEAQRIQERLCAQNSELQGKaneiektfqisQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRL 178
Cdd:PRK04863 964 VVQRRAHFSYEDAAEMLAKNSDLNEKLRQR-----------LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAK 1032
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568926833 179 QKTLQEIlekhEQEKTELESRVRETALGEFRLQTEEWEAE-------RRELQLIVQEQDSAVQSMQKKVEQLE 244
Cdd:PRK04863 1033 RQMLQEL----KQELQDLGVPADSGAEERARARRDELHARlsanrsrRNQLEKQLTFCEAEMDNLTKKLRKLE 1101
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
986-1151 |
3.22e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.82 E-value: 3.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 986 IFGFT--QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLnefkhsklithekfeSACEELNNALLREQQAQ 1063
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1064 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 1143
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 568926833 1144 RMAAKDKE 1151
Cdd:COG4913 737 EAAEDLAR 744
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
183-825 |
3.41e-03 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 42.02 E-value: 3.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 183 QEILEKHEQEKTELESRVRETALGEFRlQTEEW----EAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS------- 251
Cdd:pfam05483 62 QEGLKDSDFENSEGLSRLYSKLYKEAE-KIKKWkvsiEAELKQKENKLQENRKIIEAQRKAIQELQFENEKVSlkleeei 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 252 ----DLLRRQTSELEF----------STQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRI-----RD 312
Cdd:pfam05483 141 qenkDLIKENNATRHLcnllketcarSAEKTKKYEYEREETRQVYMDLNNNIEKMILAFEELRVQAENARLEMhfklkED 220
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 313 LEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNT---QESCAKLNLLEREYFSQNKKLNEEIEDQ---KKVIID 386
Cdd:pfam05483 221 HEKIQHLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTfllEESRDKANQLEEKTKLQDENLKELIEKKdhlTKELED 300
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 387 LSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQwtsgvhkdkdkppSFSVVLETLRRTLTD 466
Cdd:pfam05483 301 IKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVVT-------------EFEATTCSLEELLRT 367
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 467 YQNKLEDASNELNNINDAKEKTSNELDSTkqkieTHIKNTKELqdkltevhkELSHLRAKCADREALITSLKVelqnvlh 546
Cdd:pfam05483 368 EQQRLEKNEDQLKIITMELQKKSSELEEM-----TKFKNNKEV---------ELEELKKILAEDEKLLDEKKQ------- 426
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 547 cWEKEKACAAQCESELQKLSQAFQK---DSEEKLTFLHTLYQHlvagcvLIKQPEGMLDKFSWSELCAV-LQENVDALIA 622
Cdd:pfam05483 427 -FEKIAEELKGKEQELIFLLQAREKeihDLEIQLTAIKTSEEH------YLKEVEDLKTELEKEKLKNIeLTAHCDKLLL 499
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 623 DlnraNEKIShleyicKNKSDTMRELQQTQEDTFNKvaeqiKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKN 702
Cdd:pfam05483 500 E----NKELT------QEASDMTLELKKHQEDIINC-----KKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEV 564
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 703 SEKLNRIETSHEQLVRENSHFKTTLSRTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLEL----FKLE 778
Cdd:pfam05483 565 KCKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIkvnkLELE 644
|
650 660 670 680
....*....|....*....|....*....|....*....|....*..
gi 568926833 779 IRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFRKGVIAILAANRLK 825
Cdd:pfam05483 645 LASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQ 691
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
1004-1171 |
4.04e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.04e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1004 RLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKhsklithekfesacEELNNALLREQQAQMLLNEQAQQLQELNYRLELH 1083
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELE--------------AELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1084 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENM 1163
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
....*...
gi 568926833 1164 LHKVRDQI 1171
Cdd:COG1196 367 LLEAEAEL 374
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
990-1151 |
4.44e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.46 E-value: 4.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 990 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEfkhskliTHEKFESACEELNNALLREQQAQMLLNEQ 1069
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------ELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 1070 AQQLQELNYRLELhssEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKD 1149
Cdd:COG1196 311 RRELEERLEELEE---ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
..
gi 568926833 1150 KE 1151
Cdd:COG1196 388 LL 389
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
101-285 |
5.17e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.16 E-value: 5.17e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 101 RRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREEcrrfehDLEERDNI----IQNCNQEYESLMQEKT 176
Cdd:COG3206 163 EQNLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNGLV------DLSEEAKLllqqLSELESQLAEARAELA 236
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 177 RLQKTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAE-HMDCSDLLR 255
Cdd:COG3206 237 EAEARLAALRAQLGSGPDALPELLQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILA 316
|
170 180 190
....*....|....*....|....*....|
gi 568926833 256 RQTSELEFSTQREERLRKEFEATTLRVRKL 285
Cdd:COG3206 317 SLEAELEALQAREASLQAQLAQLEARLAEL 346
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
35-223 |
5.56e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 35 DIIADLRKKLHRAKKEKlemtTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRI 114
Cdd:TIGR02169 308 RSIAEKERELEDAEERL----AKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAET 383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 115 QERLCAQNSELQGKANEIEKtFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQ----------KTLQE 184
Cdd:TIGR02169 384 RDELKDYREKLEKLKREINE-LKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKAleikkqewklEQLAA 462
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 568926833 185 ILEKHEQEKTELESRVR--ETALGEFRLQTEEWEAERRELQ 223
Cdd:TIGR02169 463 DLSKYEQELYDLKEEYDrvEKELSKLQRELAEAEAQARASE 503
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
8-412 |
5.99e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.93 E-value: 5.99e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 8 NATPGDTQRLKNASLDVKQMLKNETES--DIIADLRKKLHRAKKEklemttkhnaeLSSYESQIARLRSEVEkgEALRQR 85
Cdd:pfam01576 418 QARLSESERQRAELAEKLSKLQSELESvsSLLNEAEGKNIKLSKD-----------VSSLESQLQDTQELLQ--EETRQK 484
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 86 LEYDLAVARKEAGlgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQ---ISQEKWREECRRFEHDLEERDNIIQ 162
Cdd:pfam01576 485 LNLSTRLRQLEDE--RNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEedaGTLEALEEGKKRLQRELEALTQQLE 562
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 163 NCNQEYESLMQEKTRLQKTLQEI-------------LEK--------------------HEQEKTELESRVRET------ 203
Cdd:pfam01576 563 EKAAAYDKLEKTKNRLQQELDDLlvdldhqrqlvsnLEKkqkkfdqmlaeekaisaryaEERDRAEAEAREKETralsla 642
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 204 -ALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEhmdcSDLLRRQTSELEfsTQREErLRKEFEATTLRV 282
Cdd:pfam01576 643 rALEEALEAKEELERTNKQLRAEMEDLVSSKDDVGKNVHELERS----KRALEQQVEEMK--TQLEE-LEDELQATEDAK 715
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 283 RKLEENIEAERAAHLESKFNSE--------IIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQE 354
Cdd:pfam01576 716 LRLEVNMQALKAQFERDLQARDeqgeekrrQLVKQVRELEAELEDERKQRAQAVAAKKKLELDLKELEAQIDAANKGREE 795
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 568926833 355 SCAKLNLLEREYFSQNKKLNEEIEDQKKVII---DLSKRLQYNEKSCGELQEELVMAKKHQ 412
Cdd:pfam01576 796 AVKQLKKLQAQMKDLQRELEEARASRDEILAqskESEKKLKNLEAELLQLQEDLAASERAR 856
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
485-826 |
6.02e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.08 E-value: 6.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 485 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRA-----------KCADREALITSLKVELQNVLHCWEKEKA 553
Cdd:COG1196 174 KEEAERKLEATEENLE-------RLEDILGELERQLEPLERqaekaeryrelKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 554 CAAQCESELQKLSQAFQKDSEEKLTFLHTLYQhlvagcvlikqpegmldkfswselcavLQENVDALIADLNRANEKISH 633
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEE---------------------------LELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 634 LEYICKNKSDTMRELQQTQEDTfNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSH 713
Cdd:COG1196 300 LEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 714 EQLVRENSHFKTTLSRTQREQTCLLAACALMAGALcplySRSCALSTQRDFLQEQVNSLELFKLEIRTLAQALSAVDEKK 793
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350
....*....|....*....|....*....|...
gi 568926833 794 QEEAKTKKKTFKGLVRVFRKGVIAILAANRLKL 826
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
180-343 |
7.75e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.67 E-value: 7.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 180 KTLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRELQLIVQEQDSAVQSMQKKVEQLEAEHMDCS----DLLR 255
Cdd:COG4913 265 AAARERLAELEYLRAALRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIRGNGgdrlEQLE 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 256 RQTSELEFSTQREERLRKEFEAttlRVRKLEENIEAERAAHLEskfNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIK 335
Cdd:COG4913 345 REIERLERELEERERRRARLEA---LLAALGLPLPASAEEFAA---LRAEAAALLEALEEELEALEEALAEAEAALRDLR 418
|
....*...
gi 568926833 336 NEFKEVES 343
Cdd:COG4913 419 RELRELEA 426
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
69-716 |
8.25e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 8.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 69 IARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcaqnselQGKANEIEKTFQISQEKWREECR 148
Cdd:pfam12128 233 IAGIMKIRPEFTKLQQEFNTLESAELRLSHLHFGYKSDETLIASRQEER--------QETSAELNQLLRTLDDQWKEKRD 304
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 149 RFEHDLEERDNIIQNCNQEYESLMQEKTRLQK----TLQEILEKHEQEKTELESRVRETALGEFRLQTEEWEAERRElQL 224
Cdd:pfam12128 305 ELNGELSAADAAVAKDRSELEALEDQHGAFLDadieTAAADQEQLPSWQSELENLEERLKALTGKHQDVTAKYNRRR-SK 383
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 225 IVQEQDSAVQSMQKKV----EQLEAEHMDCSDLLRRQTSElefstqreerLRKEFEATTLRVRKLEENIEaERAAHL--- 297
Cdd:pfam12128 384 IKEQNNRDIAGIKDKLakirEARDRQLAVAEDDLQALESE----------LREQLEAGKLEFNEEEYRLK-SRLGELklr 452
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 298 --------ESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQ 369
Cdd:pfam12128 453 lnqatatpELLLQLENFDERIERAREEQEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQSALDELELQLFPQ 532
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 370 NKKLNEEiedqkkviidLSKRLQYNEKSCGELQEelvmakkhQAFLVETCENNVRELESILGSFSVsaqWTSGVHKDKDK 449
Cdd:pfam12128 533 AGTLLHF----------LRKEAPDWEQSIGKVIS--------PELLHRTDLDPEVWDGSVGGELNL---YGVKLDLKRID 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 450 PPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIE---THIKNTKELQDKLTEVHKELShlRAK 526
Cdd:pfam12128 592 VPEWAASEEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASREETfarTALKNARLDLRRLFDEKQSEK--DKK 669
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 527 CADREALITSLKVELQNVlhcwEKEKacaAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLV----AGCVLIKQPEGMLD 602
Cdd:pfam12128 670 NKALAERKDSANERLNSL----EAQL---KQLDKKHQAWLEEQKEQKREARTEKQAYWQVVEgaldAQLALLKAAIAARR 742
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926833 603 KFSWSELCAVLQENVDAL---------IADLNRANEK-ISHLEYICKNKSDtMRELQQTQEDTFNKVAEQIKAQESCWQK 672
Cdd:pfam12128 743 SGAKAELKALETWYKRDLaslgvdpdvIAKLKREIRTlERKIERIAVRRQE-VLRYFDWYQETWLQRRPRLATQLSNIER 821
|
650 660 670 680
....*....|....*....|....*....|....*....|....
gi 568926833 673 QKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQL 716
Cdd:pfam12128 822 AISELQQQLARLIADTKLRRAKLEMERKASEKQQVRLSENLRGL 865
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
457-530 |
9.03e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 9.03e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926833 457 LETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR 530
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| |
