|
Name |
Accession |
Description |
Interval |
E-value |
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
58-774 |
1.41e-18 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 92.43 E-value: 1.41e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 58 HNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQ 137
Cdd:TIGR02168 237 LREELEELQEELKEAEEELEELTAELQELEEKLEELRLE----VSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 138 ISQEKWREECRRFEHDLEERDNIIQNCNQ---EYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQT 214
Cdd:TIGR02168 313 NLERQLEELEAQLEELESKLDELAEELAEleeKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLE 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 215 SELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFnsEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEF 294
Cdd:TIGR02168 393 LQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAEL--KELQAELEELEEELEELQEELERLEEALEELREEL 470
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 295 KEVESAYEREKQNTQESCAKLNLLER---------EYFSQNKKLNEEIEDQKKVIID---------------LSKRLQY- 349
Cdd:TIGR02168 471 EEAEQALDAAERELAQLQARLDSLERlqenlegfsEGVKALLKNQSGLSGILGVLSElisvdegyeaaieaaLGGRLQAv 550
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 350 ---NEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDK-PPSFSVVLETLRRTL---TD 422
Cdd:TIGR02168 551 vveNLNAAKKAIAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGVAKDLVKfDPKLRKALSYLLGGVlvvDD 630
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 423 YQNKLEDASNELNN----------------INDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR 486
Cdd:TIGR02168 631 LDNALELAKKLRPGyrivtldgdlvrpggvITGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEEL 710
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 487 EALITSLK----------VELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGM 556
Cdd:TIGR02168 711 EEELEQLRkeleelsrqiSALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQ 790
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 557 LDKFswSELCAVLQENVDALIADLNRANEKISHLEYICKNKSDTMRELQQTQEDTfnkvaeqikaqescwQKQKKELEFQ 636
Cdd:TIGR02168 791 IEQL--KEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDL---------------EEQIEELSED 853
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 637 YSELLLEVQRRAQKFQEIAEKNSEKLNRIETSHEQLVRENSHFkTTLSRTQREqtcllaacalmagalcpLYSRSCALST 716
Cdd:TIGR02168 854 IESLAAEIEELEELIEELESELEALLNERASLEEALALLRSEL-EELSEELRE-----------------LESKRSELRR 915
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 568926835 717 QRDFLQEQVNSLEL----FKLEIRTLAQALSAVDEKKQEEAKTKKKTFKGLVRVFRKGVIAI 774
Cdd:TIGR02168 916 ELEELREKLAQLELrlegLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRL 977
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
46-335 |
1.86e-10 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 65.86 E-value: 1.86e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 46 RAKKEKLEMTtkhNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSEL 125
Cdd:TIGR02169 670 RSEPAELQRL---RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDL 746
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 126 QGKANEIEKTfqisqekwREECRRFEHDLEERDNIIQNCNQEYESLMQEktrlqktlqEQDSAVQSMQKKVEQLEAEHMD 205
Cdd:TIGR02169 747 SSLEQEIENV--------KSELKELEARIEELEEDLHKLEEALNDLEAR---------LSHSRIPEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 206 CSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLES-----KFNSEI--IQLRIRDLEGALQVEKA 278
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLngkkeELEEELeeLEAALRDLESRLGDLKK 889
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568926835 279 SQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIED 335
Cdd:TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEI 946
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
60-336 |
1.88e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.73 E-value: 1.88e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 60 AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQIS 139
Cdd:COG1196 232 LKLRELEAELEELEAELEELEAELEELEAELAELEAE----LEELRLELEELELELEEAQAEEYELLAELARLEQDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 140 QEKWREECRRFEHDLEERDNIiqncNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdLLRRQTSELEF 219
Cdd:COG1196 308 EERRRELEERLEELEEELAEL----EEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA------LLEAEAELAEA 377
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 220 STQREERLRKEFEATTLRVRKLEENIEAERAAhleskfnsEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVES 299
Cdd:COG1196 378 EEELEELAEELLEALRAAAELAAQLEELEEAE--------EALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270
....*....|....*....|....*....|....*..
gi 568926835 300 AYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQ 336
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEEL 486
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
66-371 |
4.31e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 4.31e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 66 ESQIARLRSEVEKgeALR--------QRLEYDLAVAR-KEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTF 136
Cdd:COG1196 199 ERQLEPLERQAEK--AERyrelkeelKELEAELLLLKlRELEAELEELEAELEELEAELEELEAELAELEAELEELRLEL 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 137 QISQEKwREECRRFEHDLEERdniIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSE 216
Cdd:COG1196 277 EELELE-LEEAQAEEYELLAE---LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 217 LEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKE 296
Cdd:COG1196 353 LEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAE 432
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 297 VESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL 371
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFL 507
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
37-302 |
1.01e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 63.03 E-value: 1.01e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 37 IADLRKKLHRAKKEKLEMTTKH---NAELSSYESQIARLRSEVE-KGEALRQ------RLEYDLAVARKEaglgRRAAEE 106
Cdd:COG1196 241 LEELEAELEELEAELEELEAELaelEAELEELRLELEELELELEeAQAEEYEllaelaRLEQDIARLEER----RRELEE 316
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 107 RLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIiqncNQEYESLMQEKTRLQKTLQEQD 186
Cdd:COG1196 317 RLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEA----EAELAEAEEELEELAEELLEAL 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 187 SAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRI 266
Cdd:COG1196 393 RAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEA 472
|
250 260 270
....*....|....*....|....*....|....*.
gi 568926835 267 RDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYE 302
Cdd:COG1196 473 ALLEAALAELLEELAEAAARLLLLLEAEADYEGFLE 508
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
155-482 |
1.31e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 62.77 E-value: 1.31e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 155 EERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcSDLLRRQTSELEfstQREERLRKEFEAT 234
Cdd:TIGR02168 666 AKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEE----LEQLRKELEELS---RQISALRKDLARL 738
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 235 TLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKqntqescAK 314
Cdd:TIGR02168 739 EAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELR-------AE 811
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 315 LNLLEREYFSQNKKLneeiEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQ 394
Cdd:TIGR02168 812 LTLLNEEAANLRERL----ESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 395 wtsGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI--------ETHIKNTKELQ 466
Cdd:TIGR02168 888 ---ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLseeysltlEEAEALENKIE 964
|
330
....*....|....*.
gi 568926835 467 DKLTEVHKELSHLRAK 482
Cdd:TIGR02168 965 DDEEEARRRLKRLENK 980
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
43-365 |
4.07e-09 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 61.23 E-value: 4.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 43 KLHRAKKE---KLEMTTKH----NAELSSYESQIARLRSEVEKGEALRQ------RLEYDLAVAR-KEAGLGRRAAEERL 108
Cdd:TIGR02168 169 KYKERRKEterKLERTRENldrlEDILNELERQLKSLERQAEKAERYKElkaelrELELALLVLRlEELREELEELQEEL 248
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 109 AEAQRIQERLCAQNSELQGKANEIEKTFqisqekwreecrrfeHDLEERDNIIQncnQEYESLMQEKTRLQKTLQEQDSA 188
Cdd:TIGR02168 249 KEAEEELEELTAELQELEEKLEELRLEV---------------SELEEEIEELQ---KELYALANEISRLEQQKQILRER 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 189 VQSMQKKVEQLEAEhmdcsdllrrqtseLEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRD 268
Cdd:TIGR02168 311 LANLERQLEELEAQ--------------LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEE 376
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 269 LEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKK-LNEEIEDQKKVIIDLSKRL 347
Cdd:TIGR02168 377 LEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKeLQAELEELEEELEELQEEL 456
|
330
....*....|....*...
gi 568926835 348 QYNEKSCGELQEELVMAK 365
Cdd:TIGR02168 457 ERLEEALEELREELEEAE 474
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
90-666 |
5.67e-09 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 60.85 E-value: 5.67e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 90 LAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEK--TFQISQEKWREECRRFEHDLEERDNIIQNCNQE 167
Cdd:PRK03918 167 LGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEisSELPELREELEKLEKEVKELEELKEEIEELEKE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 168 YESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdllRRQTSELEFSTQREERLRKEFEATTLRVRKLEeniea 247
Cdd:PRK03918 247 LESLEGSKRKLEEKIRELEERIEELKKEIEELEEK--------VKELKELKEKAEEYIKLSEFYEEYLDELREIE----- 313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 248 ERAAHLESKFNSeiIQLRIRDLEgalqvekasqaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNK 327
Cdd:PRK03918 314 KRLSRLEEEING--IEERIKELE-----------EKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKR 380
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 328 KLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLvetcENNVRELESILGSFSVSAQWTSGVHKdKDKPP 407
Cdd:PRK03918 381 LTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL----KKAIEELKKAKGKCPVCGRELTEEHR-KELLE 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 408 SFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTS---------NELDSTKQKIETHI-----KNTKE---LQDKLT 470
Cdd:PRK03918 456 EYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESeliklkelaEQLKELEEKLKKYNleeleKKAEEyekLKEKLI 535
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 471 EVHKELSHLRAKCADREALITSLKvELQNVLHCWEKEKacaAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLI 550
Cdd:PRK03918 536 KLKGEIKSLKKELEKLEELKKKLA-ELEKKLDELEEEL---AELLKELEELGFESVEELEERLKELEPFYNEYLELKDAE 611
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 551 KQPEGMLDKFswselcAVLQENVDALIADLNRANEKISHLEyicknksDTMRELQQT-QEDTFNKVAEQIKAQESCWQKQ 629
Cdd:PRK03918 612 KELEREEKEL------KKLEEELDKAFEELAETEKRLEELR-------KELEELEKKySEEEYEELREEYLELSRELAGL 678
|
570 580 590
....*....|....*....|....*....|....*..
gi 568926835 630 KKELEfQYSELLLEVQRRAQKFQEIAEKNSEKLNRIE 666
Cdd:PRK03918 679 RAELE-ELEKRREEIKKTLEKLKEELEEREKAKKELE 714
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
31-287 |
5.87e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 60.72 E-value: 5.87e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 31 ETESDIIADLRKKLHRAKKEKLEmttkHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGL---GRRAAEER 107
Cdd:COG1196 270 EELRLELEELELELEEAQAEEYE----LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEleeELEELEEE 345
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 108 LAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREEcrrfEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDS 187
Cdd:COG1196 346 LEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEEL----AEELLEALRAAAELAAQLEELEEAEEALLERLERLEE 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 188 AVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIR 267
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
250 260
....*....|....*....|
gi 568926835 268 DLEGALQVEKASQAEAVADL 287
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRG 521
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
101-386 |
2.15e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.79 E-value: 2.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 101 RRAAEERLAEAQriqERLcaqnSELQGKANEIEKtfQISQ-EKWREECRRF---EHDLEERDNI-----IQNCNQEYESL 171
Cdd:COG1196 174 KEEAERKLEATE---ENL----ERLEDILGELER--QLEPlERQAEKAERYrelKEELKELEAEllllkLRELEAELEEL 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 172 MQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAA 251
Cdd:COG1196 245 EAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEE 324
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 252 HLEskfnseiIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYFSQNKKLNE 331
Cdd:COG1196 325 LAE-------LEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE---AEEELEELAEELLEALRA 394
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 332 EIEDQKKvIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESIL 386
Cdd:COG1196 395 AAELAAQ-LEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAA 448
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
21-533 |
4.42e-08 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 57.77 E-value: 4.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 21 SLDVKQMLKNETE--------SDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAV 92
Cdd:PRK03918 167 LGEVIKEIKRRIErlekfikrTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE-ELEK 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 93 ARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQE-----KWREECRRFEHDLEERDNIIQNCNQE 167
Cdd:PRK03918 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEyiklsEFYEEYLDELREIEKRLSRLEEEING 325
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 168 YESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEA 247
Cdd:PRK03918 326 IEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEE 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 248 ERAAHLESK--FNSEIIQLR--IRDLEGA------------------------LQVEKASQ--AEAVADLEMIKNEFKEV 297
Cdd:PRK03918 406 EISKITARIgeLKKEIKELKkaIEELKKAkgkcpvcgrelteehrkelleeytAELKRIEKelKEIEEKERKLRKELREL 485
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 298 ESAYEREKQ------------NTQESCAKLNLLE-----REYFSQNKKLNE------EIEDQKKVIIDLSKRLQYNEKSC 354
Cdd:PRK03918 486 EKVLKKESEliklkelaeqlkELEEKLKKYNLEElekkaEEYEKLKEKLIKlkgeikSLKKELEKLEELKKKLAELEKKL 565
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 355 GELQEELVMAKKHQAFL----VETCENNVRELESILGSFSvsaqwtsgvhKDKDKPPSfsvvLETLRRTLTDYQNKLEDA 430
Cdd:PRK03918 566 DELEEELAELLKELEELgfesVEELEERLKELEPFYNEYL----------ELKDAEKE----LEREEKELKKLEEELDKA 631
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 431 SNELNNINDAKEKTSNELDSTKQKI--ETHikntKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHcwEKEK 508
Cdd:PRK03918 632 FEELAETEKRLEELRKELEELEKKYseEEY----EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKE--ELEE 705
|
570 580
....*....|....*....|....*
gi 568926835 509 ACAAQCESELQKLSQAFQKDSEEKL 533
Cdd:PRK03918 706 REKAKKELEKLEKALERVEELREKV 730
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
34-265 |
4.72e-08 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 56.70 E-value: 4.72e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 34 SDIIADLRKKLHRAKKEKLEMTTKHN---AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE 110
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAalkKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 111 AQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRR---FEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDS 187
Cdd:COG4942 99 LEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRlqyLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926835 188 AVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLR 265
Cdd:COG4942 179 LLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAAGFAALKGKLP 256
|
|
| MAD |
pfam05557 |
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint ... |
44-479 |
9.13e-08 |
|
Mitotic checkpoint protein; This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated.
Pssm-ID: 461677 [Multi-domain] Cd Length: 660 Bit Score: 56.67 E-value: 9.13e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 44 LHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNS 123
Cdd:pfam05557 11 LSQLQNEKKQMELEHKRARIELEKKASALKRQLDRESDRNQELQKRIRLLEKREAEAEEALREQAELNRLKKKYLEALNK 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 124 ELQGKANEIEKTFQISQEKWREecrrfehdLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEH 203
Cdd:pfam05557 91 KLNEKESQLADAREVISCLKNE--------LSELRRQIQRAELELQSTNSELEELQERLDLLKAKASEAEQLRQNLEKQQ 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 204 MDCSDlLRRQTSELEFSTQREER---LRKEFEATTLRVRKLEENIEA--ERAAHL-ESKFNSEIIQLRIRDLEGALQVEK 277
Cdd:pfam05557 163 SSLAE-AEQRIKELEFEIQSQEQdseIVKNSKSELARIPELEKELERlrEHNKHLnENIENKLLLKEEVEDLKRKLEREE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 278 ASQAEAVA---DLEMIKNEFKEVES--------------AYEREKQNTQEscaKLNLLEREYFSQN---------KKLNE 331
Cdd:pfam05557 242 KYREEAATlelEKEKLEQELQSWVKlaqdtglnlrspedLSRRIEQLQQR---EIVLKEENSSLTSsarqlekarRELEQ 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 332 EIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSG---VHKDKDKPPS 408
Cdd:pfam05557 319 ELAQYLKKIEDLNKKLKRHKALVRRLQRRVLLLTKERDGYRAILESYDKELTMSNYSPQLLERIEEAedmTQKMQAHNEE 398
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 568926835 409 FSVVLETLRRTLTDYQNKLEDASNEL-----NNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHL 479
Cdd:pfam05557 399 MEAQLSVAEEELGGYKQQAQTLERELqalrqQESLADPSYSKEEVDSLRRKLETLELERQRLREQKNELEMELERR 474
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
64-438 |
1.51e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.22 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEaglgRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTfqisqekw 143
Cdd:TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAELRKE----LEELEEELEQLRKELEELSRQISALRKDLARLEAE-------- 741
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 144 reecrrfehdleerdniIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQR 223
Cdd:TIGR02168 742 -----------------VEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 224 EERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYER 303
Cdd:TIGR02168 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 304 EKQNtqescakLNLLEREYFSQNKKLNEeiedqkkviidLSKRLQYNEKSCGELQEELVMAKKHQAFLvetcENnvrELE 383
Cdd:TIGR02168 885 LEEA-------LALLRSELEELSEELRE-----------LESKRSELRRELEELREKLAQLELRLEGL----EV---RID 939
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 384 SILGSFSVSAQWTSGVHKDKDKPPSFSvvLETLRRTLTDYQNKLedasNELNNIN 438
Cdd:TIGR02168 940 NLQERLSEEYSLTLEEAEALENKIEDD--EEEARRRLKRLENKI----KELGPVN 988
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
22-499 |
1.81e-07 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 55.80 E-value: 1.81e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 22 LDVKQMLKNETESdiiadlrKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKE----- 96
Cdd:TIGR04523 114 NDKEQKNKLEVEL-------NKLEKQKKENKKNIDKFLTEIKKKEKELEKLNNKYNDLKKQKEELENELNLLEKEklniq 186
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 97 -----AGLGRRAAEERLAEAQRIQER---LCAQNSELQGKANEIEKTFQISQEKwreecrrfehdLEERDNIIQNCNQEY 168
Cdd:TIGR04523 187 knidkIKNKLLKLELLLSNLKKKIQKnksLESQISELKKQNNQLKDNIEKKQQE-----------INEKTTEISNTQTQL 255
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 169 ESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEaehmdcsDLLRRQTSELE-FSTQREERLRKEFEATTLRVRKLEENIEA 247
Cdd:TIGR04523 256 NQLKDEQNKIKKQLSEKQKELEQNNKKIKELE-------KQLNQLKSEISdLNNQKEQDWNKELKSELKNQEKKLEEIQN 328
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 248 ERAAHLE--SKFNSEIIQLrirdlegalqveKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEreyfSQ 325
Cdd:TIGR04523 329 QISQNNKiiSQLNEQISQL------------KKELTNSESENSEKQRELEEKQNEIEKLKKENQSYKQEIKNLE----SQ 392
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 326 NKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEElvmakkHQAFLVETCENNvRELESIlgsfsvsaqwtsgvhkdKDK 405
Cdd:TIGR04523 393 INDLESKIQNQEKLNQQKDEQIKKLQQEKELLEKE------IERLKETIIKNN-SEIKDL-----------------TNQ 448
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 406 PPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCAD 485
Cdd:TIGR04523 449 DSVKELIIKNLDNTRESLETQLKVLSRSINKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKVKDLTKKISSLKEKIEK 528
|
490
....*....|....
gi 568926835 486 REALITSLKVELQN 499
Cdd:TIGR04523 529 LESEKKEKESKISD 542
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
39-299 |
1.91e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 39 DLRKKLHRAK-KEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVA-----------RKEAGLGRRAAEE 106
Cdd:TIGR02169 215 ALLKEKREYEgYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIeqlleelnkkiKDLGEEEQLRVKE 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 107 RLAEAQRIQERLCAQNSELQGKANEIEKTFQISQE---KWREECRRFEHDLEERD-------NIIQNCNQEYESLMQEKT 176
Cdd:TIGR02169 295 KIGELEAEIASLERSIAEKERELEDAEERLAKLEAeidKLLAEIEELEREIEEERkrrdkltEEYAELKEELEDLRAELE 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 177 RLQKTLQEQDSAVQSMQKKVEQLeaehmdcsdllrrqTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESK 256
Cdd:TIGR02169 375 EVDKEFAETRDELKDYREKLEKL--------------KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELE 440
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568926835 257 FNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVES 299
Cdd:TIGR02169 441 EEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
136-523 |
2.32e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.32e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 136 FQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTR------LQKTLQEQD-----SAVQSMQKKVEQLEAEhm 204
Cdd:TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKaeryqaLLKEKREYEgyellKEKEALERQKEAIERQ-- 245
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 205 dcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfnSEIIQLRIRDLEGALQVEKASQAEAV 284
Cdd:TIGR02169 246 -----LASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDL----------GEEEQLRVKEKIGELEAEIASLERSI 310
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 285 AdlemiknefkevesAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQynekscgELQEELvma 364
Cdd:TIGR02169 311 A--------------EKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYA-------ELKEEL--- 366
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 365 kkhqaflvetcennvRELESILGSFSVSAQwtsgvhkdkdkppsfsvvleTLRRTLTDYQNKLEDASNELNNINDAKEKT 444
Cdd:TIGR02169 367 ---------------EDLRAELEEVDKEFA--------------------ETRDELKDYREKLEKLKREINELKRELDRL 411
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926835 445 SNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQ 523
Cdd:TIGR02169 412 QEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQR 490
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
37-205 |
1.35e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 52.85 E-value: 1.35e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 37 IADLRKKLHRAKKEKLEMTTKHNaELSSYESQIARLRSEVEKGEALRQRLEYdlAVARKEAGLGRRAAEERLAEAQRIQE 116
Cdd:COG4717 73 LKELEEELKEAEEKEEEYAELQE-ELEELEEELEELEAELEELREELEKLEK--LLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 117 RLCAQNSELQGKANEIEKTFQiSQEKWREECRR-FEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKK 195
Cdd:COG4717 150 ELEERLEELRELEEELEELEA-ELAELQEELEElLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170
....*....|
gi 568926835 196 VEQLEAEHMD 205
Cdd:COG4717 229 LEQLENELEA 238
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
24-530 |
1.57e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.84 E-value: 1.57e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 24 VKQMLKNETESDIIADLRKKLHRAKKEKLEMttKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRA 103
Cdd:PTZ00121 1304 ADEAKKKAEEAKKADEAKKKAEEAKKKADAA--KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKAD 1381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 104 AEERLAEAQRIQERLCAQNSELQGKANEIEKtfQISQEKWREECRRFEHDLEERDNIIQNCNQEyeslmQEKTRLQKTLQ 183
Cdd:PTZ00121 1382 AAKKKAEEKKKADEAKKKAEEDKKKADELKK--AAAAKKKADEAKKKAEEKKKADEAKKKAEEA-----KKADEAKKKAE 1454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 184 EQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSEL----EFSTQREERLRKEFEATTL--RVRKLEENIEAERAAHLESKf 257
Cdd:PTZ00121 1455 EAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAkkkaEEAKKKADEAKKAAEAKKKadEAKKAEEAKKADEAKKAEEA- 1533
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 258 nseiiqlriRDLEGALQVEKASQAEAVADLEMIKN--EFKEVESAyEREKQNTQESCAKLNLLEREYFSQNKKLNEEIED 335
Cdd:PTZ00121 1534 ---------KKADEAKKAEEKKKADELKKAEELKKaeEKKKAEEA-KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 336 QKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAfLVETCENNVRELESIlgsfsvsaqwtsgvhkdKDKPPSFSVVLET 415
Cdd:PTZ00121 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ-LKKKEAEEKKKAEEL-----------------KKAEEENKIKAAE 1665
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 416 LRRTLTDYQNKLEDASNELNNINDAKEKTSNElDSTKQKIETHIKNTKELQDKLTEVHK--ELSHLRAKCADREALITSL 493
Cdd:PTZ00121 1666 EAKKAEEDKKKAEEAKKAEEDEKKAAEALKKE-AEEAKKAEELKKKEAEEKKKAEELKKaeEENKIKAEEAKKEAEEDKK 1744
|
490 500 510
....*....|....*....|....*....|....*..
gi 568926835 494 KVELQNVLhcwEKEKACAAQCESELQKLSQAFQKDSE 530
Cdd:PTZ00121 1745 KAEEAKKD---EEEKKKIAHLKKEEEKKAEEIRKEKE 1778
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
90-360 |
2.34e-06 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 52.05 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 90 LAVARKEAGLGRRAAEERLAEAQriQERLCAQNSElqgKANEIEKTFQISQ-EKWRE-ECRRFEHDLEERDNIIQNCNQE 167
Cdd:pfam17380 275 LHIVQHQKAVSERQQQEKFEKME--QERLRQEKEE---KAREVERRRKLEEaEKARQaEMDRQAAIYAEQERMAMERERE 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 168 YESLMQE--KTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQ-TSELEFSTQREERLRK--EFEATTLRVRKLE 242
Cdd:pfam17380 350 LERIRQEerKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQElEAARKVKILEEERQRKiqQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 243 ENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEA---VADLEMIKNEFKEVESAYEREKQNTQESCA-KLNLL 318
Cdd:pfam17380 430 EEARQREVRRLEEERAREMERVRLEEQERQQQVERLRQQEEerkRKKLELEKEKRDRKRAEEQRRKILEKELEErKQAMI 509
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 568926835 319 EREyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 360
Cdd:pfam17380 510 EEE--RKRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
151-360 |
3.92e-06 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 50.53 E-value: 3.92e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 151 EHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKE 230
Cdd:COG4942 26 EAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQE-------LAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 231 FEATTLRVRKLEENIE-AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAvADLEMIKNEFKEVESAYEREKQntq 309
Cdd:COG4942 99 LEAQKEELAELLRALYrLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQA-EELRADLAELAALRAELEAERA--- 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 568926835 310 escaKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEE 360
Cdd:COG4942 175 ----ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQE 221
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
101-296 |
4.86e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 4.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 101 RRAAEERLAEAQRIQERLCAQNSELQgKANEIEKTFQISQEKWReecRRFEHDLEERDniIQNCNQEYESLMQEKTRLQK 180
Cdd:COG4913 609 RAKLAALEAELAELEEELAEAEERLE-ALEAELDALQERREALQ---RLAEYSWDEID--VASAEREIAELEAELERLDA 682
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 181 TlqeqDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSE 260
Cdd:COG4913 683 S----SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRALLEERFAAA 758
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 568926835 261 IIQLRIRD----LEGALQVEKASQAEAVADLEMIKNEFKE 296
Cdd:COG4913 759 LGDAVERElrenLEERIDALRARLNRAEEELERAMRAFNR 798
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
29-518 |
5.71e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 51.30 E-value: 5.71e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 29 KNETESDIIADLRKKLHRAKKEKLEMttKHNAELSSYESQIARLRSEVEKGEALRQRLEYdlavARKEAGLGRRAAEERL 108
Cdd:PTZ00121 1398 KKAEEDKKKADELKKAAAAKKKADEA--KKKAEEKKKADEAKKKAEEAKKADEAKKKAEE----AKKAEEAKKKAEEAKK 1471
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 109 AEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSA 188
Cdd:PTZ00121 1472 ADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADEL 1551
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 189 VQSMQ-------KKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTL----RVRKLEE-NIEAE--RAAHLE 254
Cdd:PTZ00121 1552 KKAEElkkaeekKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKmkaeEAKKAEEaKIKAEelKKAEEE 1631
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 255 SKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLL-EREYFSQNKKLNEEI 333
Cdd:PTZ00121 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKkEAEEAKKAEELKKKE 1711
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 334 EDQKKVIIDLSKRLQYNEKSCGELQ-EELVMAKKHQAFLVETCENN-----VRELESILGSFSVSAQWTSGVHKDKDKPP 407
Cdd:PTZ00121 1712 AEEKKKAEELKKAEEENKIKAEEAKkEAEEDKKKAEEAKKDEEEKKkiahlKKEEEKKAEEIRKEKEAVIEEELDEEDEK 1791
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 408 SFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADRE 487
Cdd:PTZ00121 1792 RRMEVDKKIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEADAFEKHKFNKNNENGEDGNKEADFN 1871
|
490 500 510
....*....|....*....|....*....|.
gi 568926835 488 ALITSLKVELQNVLHCWEKEKACAAQCESEL 518
Cdd:PTZ00121 1872 KEKDLKEDDEEEIEEADEIEKIDKDDIEREI 1902
|
|
| 235kDa-fam |
TIGR01612 |
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in ... |
17-459 |
6.90e-06 |
|
reticulocyte binding/rhoptry protein; This model represents a group of paralogous families in plasmodium species alternately annotated as reticulocyte binding protein, 235-kDa family protein and rhoptry protein. Rhoptry protein is localized on the cell surface and is extremely large (although apparently lacking in repeat structure) and is important for the process of invasion of the RBCs by the parasite. These proteins are found in P. falciparum, P. vivax and P. yoelii.
Pssm-ID: 130673 [Multi-domain] Cd Length: 2757 Bit Score: 50.82 E-value: 6.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 17 LKNASLDVKQmlKNETESDIiADLRKKLHRAKKEklemTTKHNAELSSYESQIARLrsevekgealrqrleYDLAVARKE 96
Cdd:TIGR01612 1303 IREKSLKIIE--DFSEESDI-NDIKKELQKNLLD----AQKHNSDINLYLNEIANI---------------YNILKLNKI 1360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 97 AGLGRRAAEErlaeAQRIQERLCAQNSELQGKANEIEKtfqISQEKWREECR-RFEHDLEERD--NIIQNCNQEYESLMQ 173
Cdd:TIGR01612 1361 KKIIDEVKEY----TKEIEENNKNIKDELDKSEKLIKK---IKDDINLEECKsKIESTLDDKDidECIKKIKELKNHILS 1433
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 174 EKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQ----TSELEFSTQReerLRKEFEATTLRVRKLEENIEA-E 248
Cdd:TIGR01612 1434 EESNIDTYFKNADENNENVLLLFKNIEMADNKSQHILKIKkdnaTNDHDFNINE---LKEHIDKSKGCKDEADKNAKAiE 1510
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 249 RAAHLESKFNSEIIQLRIRDLEGALqveKASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYF----- 323
Cdd:TIGR01612 1511 KNKELFEQYKKDVTELLNKYSALAI---KNKFAKTKKDSEIIIKEIKDAHKKFILEAEKSEQ---KIKEIKKEKFriedd 1584
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 324 -SQNKKLNeeiedqkKVIIDLSKRLQYNEKSCGELQEelvMAKKHQAFLVETcennvRELESILGSFSVSAQWTSgVHKD 402
Cdd:TIGR01612 1585 aAKNDKSN-------KAAIDIQLSLENFENKFLKISD---IKKKINDCLKET-----ESIEKKISSFSIDSQDTE-LKEN 1648
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*..
gi 568926835 403 KDKPPSFSVVLETLRrtltDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHI 459
Cdd:TIGR01612 1649 GDNLNSLQEFLESLK----DQKKNIEDKKKELDELDSEIEKIEIDVDQHKKNYEIGI 1701
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
946-1202 |
1.42e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 49.67 E-value: 1.42e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 946 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKsqsLQTQLNEFKHSKLITHEKFESACEELNNALLR----EQQAQML 1021
Cdd:TIGR02168 231 VLRLEELREELEELQEELKEAEEELEELTAELQE---LEEKLEELRLEVSELEEEIEELQKELYALANEisrlEQQKQIL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1022 LNEQAQ---QLQELNYRLELHSS-------EEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEEN 1091
Cdd:TIGR02168 308 RERLANlerQLEELEAQLEELESkldelaeELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSK 387
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1092 IRDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAMEGLQGGPEVVacQAMIKS 1171
Cdd:TIGR02168 388 VAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERL--EEALEE 465
|
250 260 270
....*....|....*....|....*....|.
gi 568926835 1172 FMDVYQLASARISTLEKEMTSHRSHIATLKS 1202
Cdd:TIGR02168 466 LREELEEAEQALDAAERELAQLQARLDSLER 496
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
144-471 |
1.44e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 49.68 E-value: 1.44e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 144 REECRRFEHDLEERDNiiqncnqEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEaehmdcsdllrrqtSELEFSTQR 223
Cdd:TIGR02169 673 PAELQRLRERLEGLKR-------ELSSLQSELRRIENRLDELSQELSDASRKIGEIE--------------KEIEQLEQE 731
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 224 EERLRKEFEATTLRVRKLEENIEAERA--AHLESKFnsEIIQLRIRDLEGALQVEKASQA-----EAVADLEMIKNEFKE 296
Cdd:TIGR02169 732 EEKLKERLEELEEDLSSLEQEIENVKSelKELEARI--EELEEDLHKLEEALNDLEARLShsripEIQAELSKLEEEVSR 809
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 297 VESAYEREKQNTQESCAKLNLLEREyfSQNKK-LNEEIEDQKKviiDLSKRLQYNEKSCGELQEELvmaKKHQAFlvetc 375
Cdd:TIGR02169 810 IEARLREIEQKLNRLTLEKEYLEKE--IQELQeQRIDLKEQIK---SIEKEIENLNGKKEELEEEL---EELEAA----- 876
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 376 ennVRELESILGSfsvsaqwtsgvhkdkdkppsfsvvletLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKI 455
Cdd:TIGR02169 877 ---LRDLESRLGD---------------------------LKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKL 926
|
330
....*....|....*.
gi 568926835 456 ETHIKNTKELQDKLTE 471
Cdd:TIGR02169 927 EALEEELSEIEDPKGE 942
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
61-515 |
1.53e-05 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 49.65 E-value: 1.53e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 61 ELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQR---IQERLCAQNSELQGKANEIEKTFQ 137
Cdd:PRK02224 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLddaDAEAVEARREELEDRDEELRDRLE 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 138 ---ISQEKWREECRRFEH---DLEERDNIIQNCNQEYESLMQEKtrlQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLR 211
Cdd:PRK02224 332 ecrVAAQAHNEEAESLREdadDLEERAEELREEAAELESELEEA---REAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 212 RQTSELEFSTQREERLRKEFEATTLRVRKLEENIEaERAAHLESKFNSEIIQlrirDLEGALQVEKASQ-----AEAVAD 286
Cdd:PRK02224 409 NAEDFLEELREERDELREREAELEATLRTARERVE-EAEALLEAGKCPECGQ----PVEGSPHVETIEEdrervEELEAE 483
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 287 LEMIKNEFKEVESAYEREKQnTQESCAKLNLLEreyfSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL----- 361
Cdd:PRK02224 484 LEDLEEEVEEVEERLERAED-LVEAEDRIERLE----ERREDLEELIAERRETIEEKRERAEELRERAAELEAEAeekre 558
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 362 VMAKKHQAflVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAK 441
Cdd:PRK02224 559 AAAEAEEE--AEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926835 442 EKTSNELDStkQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCE 515
Cdd:PRK02224 637 RELEAEFDE--ARIEEAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALENRVE 708
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
61-480 |
1.78e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 49.35 E-value: 1.78e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 61 ELSSYESQIARLRSEVEKGEALR----QRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTF 136
Cdd:pfam15921 318 QLSDLESTVSQLRSELREAKRMYedkiEELEKQLVLANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKELSLEK 397
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 137 QISQEKWREEC------RRFEHDLEERDNIIqncnQEYESLMQE-KTRLQKTLQEQDSAVQSMQ---KKVEQLEAEHMDC 206
Cdd:pfam15921 398 EQNKRLWDRDTgnsitiDHLRRELDDRNMEV----QRLEALLKAmKSECQGQMERQMAAIQGKNeslEKVSSLTAQLEST 473
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 207 SDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAEraahleskfNSEIIQLRIR-DLEgalqvekasqaeaVA 285
Cdd:pfam15921 474 KEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIEAT---------NAEITKLRSRvDLK-------------LQ 531
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 286 DLEMIKNEfkevesayEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEEL---V 362
Cdd:pfam15921 532 ELQHLKNE--------GDHLRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEIndrR 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 363 MAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvVLETLRRTLTDYQNKLEDASNELNNINDAKE 442
Cdd:pfam15921 604 LELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLR------AVKDIKQERDQLLNEVKTSRNELNSLSEDYE 677
|
410 420 430
....*....|....*....|....*....|....*...
gi 568926835 443 KTSNELDSTKQKIEThikNTKELQDKLTEVHKELSHLR 480
Cdd:pfam15921 678 VLKRNFRNKSEEMET---TTNKLKMQLKSAQSELEQTR 712
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
65-241 |
2.55e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 48.47 E-value: 2.55e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 65 YESQIARLRSEVEKGE-ALRQ-RLEYDLAVARKEAGLgrraAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEK 142
Cdd:COG3206 180 LEEQLPELRKELEEAEaALEEfRQKNGLVDLSEEAKL----LLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDA 255
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 143 WREEcrrfehdleERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAE-HMDCSDLLRRQTSELEFST 221
Cdd:COG3206 256 LPEL---------LQSPVIQQLRAQLAELEAELAELSARYTPNHPDVIALRAQIAALRAQlQQEAQRILASLEAELEALQ 326
|
170 180
....*....|....*....|
gi 568926835 222 QREERLRKEFEATTLRVRKL 241
Cdd:COG3206 327 AREASLQAQLAQLEARLAEL 346
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
424-1204 |
5.17e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 47.74 E-value: 5.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 424 QNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKnTKELQDKLTEVHKELSHLRAKCADREalITSLKVELQNVLHC 503
Cdd:TIGR02168 178 ERKLERTRENLDRLEDILNELERQLKSLERQAEKAER-YKELKAELRELELALLVLRLEELREE--LEELQEELKEAEEE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 504 WEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVagcvLIKQPEGMLdkfswselcAVLQENVDALIADLNRA 583
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALAN----EISRLEQQK---------QILRERLANLERQLEEL 321
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 584 NEKISHLEyickNKSDTMRE---LQQTQEDTFNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEI---AEK 657
Cdd:TIGR02168 322 EAQLEELE----SKLDELAEelaELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLelqIAS 397
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 658 NSEKLNRIETSHEQLVREnshfkttLSRTQREQTCLLAAcaLMAGALCPLYSRSCALSTQRDFLQEQVNSLELFKLEIRT 737
Cdd:TIGR02168 398 LNNEIERLEARLERLEDR-------RERLQQEIEELLKK--LEEAELKELQAELEELEEELEELQEELERLEEALEELRE 468
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 738 -LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES--------CKEGI 801
Cdd:TIGR02168 469 eLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaieaaLGGRL 547
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 802 GMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----ICGHLLI 868
Cdd:TIGR02168 548 QAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyLLGGVLV 627
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 869 gaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYG-----LCSHIPIMKSTAA-LQ 939
Cdd:TIGR02168 628 ----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERRreieeLEEKIEELEEKIAeLE 697
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 940 KQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKHSKLITHEKFEsacEELNNALLREQQAQ 1019
Cdd:TIGR02168 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE---AEIEELEERLEEAE 774
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1020 MLLNEQAQQLQELNYRLELHSSEeadkNQTLGEAVKSLSEAKMELRRKDQSLRQ-----------LNRHLTQLEQDKRRL 1088
Cdd:TIGR02168 775 EELAEAEAEIEELEAQIEQLKEE----LKALREALDELRAELTLLNEEAANLRErleslerriaaTERRLEDLEEQIEEL 850
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1089 EENI--------------RDAESALRMAAKDKECVANHMRTIENMLHKVRDQISLSRTAATRNDFTLQLPKLHLETFAM- 1153
Cdd:TIGR02168 851 SEDIeslaaeieeleeliEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELr 930
|
810 820 830 840 850
....*....|....*....|....*....|....*....|....*....|..
gi 568926835 1154 -EGLQGGPEVVACQAMiKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL 1204
Cdd:TIGR02168 931 lEGLEVRIDNLQERLS-EEYSLTLEEAEALENKIEDDEEEARRRLKRLENKI 981
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
441-1213 |
9.91e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 46.97 E-value: 9.91e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 441 KEKTSNELDSTKQkiethikNTKELQDKLTEVHKELSHLR--AKCADR------------EALITSLKVELQNVLHCWEK 506
Cdd:TIGR02168 174 RKETERKLERTRE-------NLDRLEDILNELERQLKSLErqAEKAERykelkaelreleLALLVLRLEELREELEELQE 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 507 EKACAAQCESELQKLSQAFQKDSEEKLTFLHTLyqhlvagcvlikqpegmldkfswSELCAVLQENVDALIADLNRANEK 586
Cdd:TIGR02168 247 ELKEAEEELEELTAELQELEEKLEELRLEVSEL-----------------------EEEIEELQKELYALANEISRLEQQ 303
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 587 ISHLEYICKNKSDTMRELQQTQEDTFNKvAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIE 666
Cdd:TIGR02168 304 KQILRERLANLERQLEELEAQLEELESK-LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 667 TSH-------EQLVRENSHF---KTTLSRTQREQTCLLA-----ACALMAGALCPLYSRSCALSTQRDFLQEQVNSLELF 731
Cdd:TIGR02168 383 TLRskvaqleLQIASLNNEIerlEARLERLEDRRERLQQeieelLKKLEEAELKELQAELEELEEELEELQEELERLEEA 462
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 732 KLEIRT-LAQALSAVDEKKQEEAKTKKKtFKGLVRVFR------KGVIAILA-ANRLKLLGQSCAFLFTWMES------- 796
Cdd:TIGR02168 463 LEELREeLEEAEQALDAAERELAQLQAR-LDSLERLQEnlegfsEGVKALLKnQSGLSGILGVLSELISVDEGyeaaiea 541
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 797 -CKEGIGMLVCTGEPKDKR--QFPKHQREQLRCLQALAWLTSSDLLGTVISSMTELQEVIS------KTDPNSR-----I 862
Cdd:TIGR02168 542 aLGGRLQAVVVENLNAAKKaiAFLKQNELGRVTFLPLDSIKGTEIQGNDREILKNIEGFLGvakdlvKFDPKLRkalsyL 621
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 863 CGHLLIgaaknsfaklMDKLSSAMASIPLHSSRSITYVEKDSLVQR---LARGLHKVNTLALKYGlcshipimKSTAALQ 939
Cdd:TIGR02168 622 LGGVLV----------VDDLDNALELAKKLRPGYRIVTLDGDLVRPggvITGGSAKTNSSILERR--------REIEELE 683
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 940 KQIFGFTQRLHAAEVERRSLRLEVTEYKRTVHEMKKELdksQSLQTQLNEFKHSKLITHEKFESACEELNNALLREQQAQ 1019
Cdd:TIGR02168 684 EKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL---EELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1020 MLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 1099
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRL 840
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1100 RMAAKDKEcvanhmrtienmlhkvRDQISLSRTAATRNDFTLQLPKLHLETfamEGLQGgpEVVACQAMIKSFMDVYQLA 1179
Cdd:TIGR02168 841 EDLEEQIE----------------ELSEDIESLAAEIEELEELIEELESEL---EALLN--ERASLEEALALLRSELEEL 899
|
810 820 830
....*....|....*....|....*....|....
gi 568926835 1180 SARISTLEKEMTSHRSHIATLKSELHTACLRENE 1213
Cdd:TIGR02168 900 SEELRELESKRSELRRELEELREKLAQLELRLEG 933
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
46-587 |
1.14e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 46.83 E-value: 1.14e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 46 RAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraAEERLAEAQRIQERLCAQNSEL 125
Cdd:COG4913 248 REQIELLEPIRELAERYAAARERLAELEYLRAALRLWFAQRRLELLEAELEE------LRAELARLEAELERLEARLDAL 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 126 QGKANEIEKtfQISQEKWREEcRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKV----EQLEA 201
Cdd:COG4913 322 REELDELEA--QIRGNGGDRL-EQLEREIERLERELEERERRRARLEALLAALGLPLPASAEEFAALRAEAaallEALEE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 202 EHMDCSDLLRRQTSELEFSTQREERLRKEFEAttLRVRKLeeNIEAeraahleskfnsEIIQLRiRDLEGALQVeKASQA 281
Cdd:COG4913 399 ELEALEEALAEAEAALRDLRRELRELEAEIAS--LERRKS--NIPA------------RLLALR-DALAEALGL-DEAEL 460
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 282 EAVADLEMIKNEFKEVESAYEREKQNtqescAKLNLL-EREYFSQ-------NK--------KLNEEIEDQKKVIID--- 342
Cdd:COG4913 461 PFVGELIEVRPEEERWRGAIERVLGG-----FALTLLvPPEHYAAalrwvnrLHlrgrlvyeRVRTGLPDPERPRLDpds 535
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 343 LSKRLQYNEKSCGE-LQEELvmakkHQAFLVETCEnNVRELESilGSFSVSAQ------WTSGVHKDKDKPPSFSVVLET 415
Cdd:COG4913 536 LAGKLDFKPHPFRAwLEAEL-----GRRFDYVCVD-SPEELRR--HPRAITRAgqvkgnGTRHEKDDRRRIRSRYVLGFD 607
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 416 LRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIK---------NTKELQDKLTEVHKELSHLRAKCADR 486
Cdd:COG4913 608 NRAKLAALEAELAELEEELAEAEERLEALEAELDALQERREALQRlaeyswdeiDVASAEREIAELEAELERLDASSDDL 687
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 487 EAL---ITSLKVELQNVlhcwEKEKACA-----------AQCESELQKLSQAFQKDSEEKLTFLHTLYQHLVAGCVLIKQ 552
Cdd:COG4913 688 AALeeqLEELEAELEEL----EEELDELkgeigrlekelEQAEEELDELQDRLEAAEDLARLELRALLEERFAAALGDAV 763
|
570 580 590
....*....|....*....|....*....|....*
gi 568926835 553 PEGMLDKfswselcavLQENVDALIADLNRANEKI 587
Cdd:COG4913 764 ERELREN---------LEERIDALRARLNRAEEEL 789
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
72-675 |
1.31e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 46.65 E-value: 1.31e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 72 LRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFE 151
Cdd:pfam15921 262 LQQHQDRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRSELREAKRMYE 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 152 HDLEERDNIIQNCNQEyesLMQEKTRLQKTLQEQDSAVQSMQKKVeqleaehmdcSDLLRRQtSELEFSTQREERLRKEF 231
Cdd:pfam15921 342 DKIEELEKQLVLANSE---LTEARTERDQFSQESGNLDDQLQKLL----------ADLHKRE-KELSLEKEQNKRLWDRD 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 232 EATTLRVRKL-----EENIEAERAAHLESKFNSEIiqlrirdlEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQ 306
Cdd:pfam15921 408 TGNSITIDHLrreldDRNMEVQRLEALLKAMKSEC--------QGQMERQMAAIQGKNESLEKVSSLTAQLESTKEMLRK 479
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 307 NTQESCAKlnllereyfsqnkklNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCEnNVRELESIL 386
Cdd:pfam15921 480 VVEELTAK---------------KMTLESSERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQ-HLKNEGDHL 543
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 387 GSFSVSAQWTSGVHKDKDKppsfsvVLETLRRTLTDY-----QNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKN 461
Cdd:pfam15921 544 RNVQTECEALKLQMAEKDK------VIEILRQQIENMtqlvgQHGRTAGAMQVEKAQLEKEINDRRLELQEFKILKDKKD 617
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 462 TK--ELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLTFLHTL 539
Cdd:pfam15921 618 AKirELEARVSDLELEKVKLVNAGSERLRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKL 697
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 540 YQHLVAGCVLIKQPEGMLDKFSWSELCAV-----LQENVDALIADLNRANEKISHLE-----------YICKNKSDTMRE 603
Cdd:pfam15921 698 KMQLKSAQSELEQTRNTLKSMEGSDGHAMkvamgMQKQITAKRGQIDALQSKIQFLEeamtnankekhFLKEEKNKLSQE 777
|
570 580 590 600 610 620 630
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 604 LQQTQEDTfNKVAEQIKAQEScwqkQKKELEFQYSELLLEVQRRAQKF---QEIAEKNSEKLNRIETSHEQLVRE 675
Cdd:pfam15921 778 LSTVATEK-NKMAGELEVLRS----QERRLKEKVANMEVALDKASLQFaecQDIIQRQEQESVRLKLQHTLDVKE 847
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
41-498 |
1.51e-04 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 46.25 E-value: 1.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 41 RKKLHRAKKEKLE----MTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrraaeERLAEAQRIQE 116
Cdd:pfam05483 210 RLEMHFKLKEDHEkiqhLEEEYKKEINDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKA--------NQLEEKTKLQD 281
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 117 RLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEK-----------TRLQKTLQEQ 185
Cdd:pfam05483 282 ENLKELIEKKDHLTKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELnkakaahsfvvTEFEATTCSL 361
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 186 DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELE----FSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEI 261
Cdd:pfam05483 362 EELLRTEQQRLEKNEDQLKIITMELQKKSSELEemtkFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQEL 441
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 262 IQL------RIRDLEGALQVEKASQaeavadlEMIKNEFKEVESAYEREKQNTQE---SCAKLNLLEREYFSQNKKLNEE 332
Cdd:pfam05483 442 IFLlqarekEIHDLEIQLTAIKTSE-------EHYLKEVEDLKTELEKEKLKNIEltaHCDKLLLENKELTQEASDMTLE 514
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 333 IEDQKKVIIDLSKRLQYNEKSCGELQE--------------ELVMAKKHQAFLVETCENNVRELE-SILGSFSVSAQWTS 397
Cdd:pfam05483 515 LKKHQEDIINCKKQEERMLKQIENLEEkemnlrdelesvreEFIQKGDEVKCKLDKSEENARSIEyEVLKKEKQMKILEN 594
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 398 GVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKN-TKELQDKLTEVHKEL 476
Cdd:pfam05483 595 KCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLNAYEIKVNKLELELASAKQKFEEIIDNyQKEIEDKKISEEKLL 674
|
490 500
....*....|....*....|...
gi 568926835 477 SHL-RAKCADREALITSLKVELQ 498
Cdd:pfam05483 675 EEVeKAKAIADEAVKLQKEIDKR 697
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
8-524 |
2.51e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 45.42 E-value: 2.51e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 8 NATPGDTQRLKNaslDVKQMLKNETESDIIADLRKKLHRAKKEKLEMttkhnaeLSSYESQIARLRSE--VEKGEALRQR 85
Cdd:PRK02224 145 NATPSDRQDMID---DLLQLGKLEEYRERASDARLGVERVLSDQRGS-------LDQLKAQIEEKEEKdlHERLNGLESE 214
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 86 L-EYDLAVARKEAGlgRRAAEERLAEAQRIQERlcaqnselqgkaneiektfqisQEKWREECRRFEHDLEERDNIIQNC 164
Cdd:PRK02224 215 LaELDEEIERYEEQ--REQARETRDEADEVLEE----------------------HEERREELETLEAEIEDLRETIAET 270
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 165 NQEYESLMQEktrlqktlqeqdsaVQSMQKKVEQLEAEHmdcSDLLrrqtSELEFSTQREERLRKEFEATTLRVRKLEEN 244
Cdd:PRK02224 271 EREREELAEE--------------VRDLRERLEELEEER---DDLL----AEAGLDDADAEAVEARREELEDRDEELRDR 329
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 245 IEAERAAhlESKFNSEIIQLRirdlegalqvekasqaEAVADLEMIKNEFKEVESAYEREKQNTQEScaklnLLEREyfS 324
Cdd:PRK02224 330 LEECRVA--AQAHNEEAESLR----------------EDADDLEERAEELREEAAELESELEEAREA-----VEDRR--E 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 325 QNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFL---VETCENNVRELESIL--------GSFSVSA 393
Cdd:PRK02224 385 EIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELeatLRTARERVEEAEALLeagkcpecGQPVEGS 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 394 QWTSGVHKDKDKPPSFSVVLETLRRTLTDYQNKLEDASnELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVH 473
Cdd:PRK02224 465 PHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAE-DLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELR 543
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|.
gi 568926835 474 KELSHLRAKCADREALITSLKVELqnvlhcwEKEKACAAQCESELQKLSQA 524
Cdd:PRK02224 544 ERAAELEAEAEEKREAAAEAEEEA-------EEAREEVAELNSKLAELKER 587
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
979-1259 |
2.67e-04 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 45.43 E-value: 2.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 979 KSQSLQTQLNEFKHSKLITHekFESACEELNNALLREQQAQMLLNEQAQQLQELNYRLELHSSEEADKNQTLGEAVKSLS 1058
Cdd:TIGR02168 214 RYKELKAELRELELALLVLR--LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1059 EAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDkecvanhmrtienmLHKVRDQIslsrtaatrnd 1138
Cdd:TIGR02168 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEE--------------LAELEEKL----------- 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1139 ftlqlpklhletfamEGLQggPEVVACQAMIKSFMDVYQLASARISTLEKEMTSHRSHIATLKSEL--HTACLRENESLQ 1216
Cdd:TIGR02168 347 ---------------EELK--EELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIasLNNEIERLEARL 409
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 568926835 1217 SMGSRDHSNLSVPSRAAAPMDTVGDLLPLQAELDTTYTFLKET 1259
Cdd:TIGR02168 410 ERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEEL 452
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
260-534 |
3.17e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.31 E-value: 3.17e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 260 EIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNE---EIEDQ 336
Cdd:COG1196 228 ELLLLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELARleqDIARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 337 KKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvVLETL 416
Cdd:COG1196 308 EERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE------AEEEL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 417 RRTLTDYQNKLEDASNELNNINDAKEktsnELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVE 496
Cdd:COG1196 382 EELAEELLEALRAAAELAAQLEELEE----AEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEE 457
|
250 260 270
....*....|....*....|....*....|....*...
gi 568926835 497 LQNVLHCWEKEKACAAQCESELQKLSQAFQKDSEEKLT 534
Cdd:COG1196 458 EEALLELLAELLEEAALLEAALAELLEELAEAAARLLL 495
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
82-352 |
3.35e-04 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 45.29 E-value: 3.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 82 LRQRLEYDLAVARKEAGLGRRAAEERLAE-------------AQRIQER---LCAQN-SELQGKANEIEKTFQISQEKwr 144
Cdd:COG4913 510 LRGRLVYERVRTGLPDPERPRLDPDSLAGkldfkphpfrawlEAELGRRfdyVCVDSpEELRRHPRAITRAGQVKGNG-- 587
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 145 eecRRFEHDLE---ERDNIIQNCNQEY-ESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEF- 219
Cdd:COG4913 588 ---TRHEKDDRrriRSRYVLGFDNRAKlAALEAELAELEEELAEAEERLEALEAELDALQERREALQRLAEYSWDEIDVa 664
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 220 STQRE----ERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFK 295
Cdd:COG4913 665 SAEREiaelEAELERLDASSDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLAR 744
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 568926835 296 EVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLskRLQYNEK 352
Cdd:COG4913 745 LELRALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERA--MRAFNRE 799
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
175-666 |
4.21e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 44.72 E-value: 4.21e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 175 KTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENI--------- 245
Cdd:pfam15921 73 KEHIERVLEEYSHQVKDLQRRLNESNELHEKQKFYLRQSVIDLQTKLQEMQMERDAMADIRRRESQSQEDLrnqlqntvh 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 246 EAERAAHLESKF----NSEIIQLRIRDL--EGALQ--------VEKASQAEAVADLEMIKNEFKEVESAYER--EKQNTQ 309
Cdd:pfam15921 153 ELEAAKCLKEDMledsNTQIEQLRKMMLshEGVLQeirsilvdFEEASGKKIYEHDSMSTMHFRSLGSAISKilRELDTE 232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 310 ESCAK---------LNLLEREyfSQNK----------KLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKKHQAF 370
Cdd:pfam15921 233 ISYLKgrifpvedqLEALKSE--SQNKielllqqhqdRIEQLISEHEVEITGLTEKASSARSQANSIQSQLEIIQEQARN 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 371 LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETlrRTLTDYQNKLEDASNELNNINDAKEKTSNELDS 450
Cdd:pfam15921 311 QNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLAN--SELTEARTERDQFSQESGNLDDQLQKLLADLHK 388
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 451 TKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR-------EALITSLKVELQNVLhcwEKEKACAAQCESELQKLSq 523
Cdd:pfam15921 389 REKELSLEKEQNKRLWDRDTGNSITIDHLRRELDDRnmevqrlEALLKAMKSECQGQM---ERQMAAIQGKNESLEKVS- 464
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 524 AFQKDSEEKLTFLHTLYQHLVAGCVLIKQPEGMLdkfswSELCAVLQENVDALIAD-------LNRANEKISHLEYIcKN 596
Cdd:pfam15921 465 SLTAQLESTKEMLRKVVEELTAKKMTLESSERTV-----SDLTASLQEKERAIEATnaeitklRSRVDLKLQELQHL-KN 538
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 597 KSDTMRELQQTQEDTFNKVAEQIKAQESCWQK--------------------QKKELEFQYSELLLEVqrraQKFQEIAE 656
Cdd:pfam15921 539 EGDHLRNVQTECEALKLQMAEKDKVIEILRQQienmtqlvgqhgrtagamqvEKAQLEKEINDRRLEL----QEFKILKD 614
|
570
....*....|
gi 568926835 657 KNSEKLNRIE 666
Cdd:pfam15921 615 KKDAKIRELE 624
|
|
| Mplasa_alph_rch |
TIGR04523 |
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of ... |
28-456 |
4.53e-04 |
|
helix-rich Mycoplasma protein; Members of this family occur strictly within a subset of Mycoplasma species. Members average 750 amino acids in length, including signal peptide. Sequences are predicted (Jpred 3) to be almost entirely alpha-helical. These sequences show strong periodicity (consistent with long alpha helical structures) and low complexity rich in D,E,N,Q, and K. Genes encoding these proteins are often found in tandem. The function is unknown.
Pssm-ID: 275316 [Multi-domain] Cd Length: 745 Bit Score: 44.63 E-value: 4.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 28 LKNETESDIIADLRKKLHRAKKEKLEMTT---KHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAA 104
Cdd:TIGR04523 300 LNNQKEQDWNKELKSELKNQEKKLEEIQNqisQNNKIISQLNEQISQLKKELTNSESENSEKQRELEEKQNEIEKLKKEN 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 105 EERLAEAQRIQERLCAQNSELQgKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQE 184
Cdd:TIGR04523 380 QSYKQEIKNLESQINDLESKIQ-NQEKLNQQKDEQIKKLQQEKELLEKEIERLKETIIKNNSEIKDLTNQDSVKELIIKN 458
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 185 QDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIeaeraahleSKFNSEIIQL 264
Cdd:TIGR04523 459 LDNTRESLETQLKVLSRS-------INKIKQNLEQKQKELKSKEKELKKLNEEKKELEEKV---------KDLTKKISSL 522
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 265 RIRdlEGALQVEKASQAEAVADLE--MIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIID 342
Cdd:TIGR04523 523 KEK--IEKLESEKKEKESKISDLEdeLNKDDFELKKENLEKEIDEKNKEIEELKQTQKSLKKKQEEKQELIDQKEKEKKD 600
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 343 LSKRLQYNEKSCGELQEELVMAKKHQAFLV-------ETCENNVRELESILGSF-SVSAQWTSGVHKDKD---------- 404
Cdd:TIGR04523 601 LIKEIEEKEKKISSLEKELEKAKKENEKLSsiiknikSKKNKLKQEVKQIKETIkEIRNKWPEIIKKIKEsktkiddiie 680
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*...
gi 568926835 405 ------KPPSFSVVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIE 456
Cdd:TIGR04523 681 lmkdwlKELSLHYKKYITRMIRIKDLPKLEEKYKEIEKELKKLDEFSKELENIIKNFN 738
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
36-526 |
4.54e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 44.37 E-value: 4.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 36 IIADLRKKLhraKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAVARKEAGLGRRAAEERLAEAQRIQ 115
Cdd:COG4717 43 IRAMLLERL---EKEADELFKPQGRKPELNLKELKELEEELKEAEEKEEEYA-ELQEELEELEEELEELEAELEELREEL 118
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 116 ERL--CAQNSELQGKANEIEKTFQISQEKWrEECRRFEHDLEERDNIIQNCNQEYESLMQEKTRL-QKTLQEQDSAVQSM 192
Cdd:COG4717 119 EKLekLLQLLPLYQELEALEAELAELPERL-EELEERLEELRELEEELEELEAELAELQEELEELlEQLSLATEEELQDL 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 193 QKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLeskfnsEIIQLRIRDLEGA 272
Cdd:COG4717 198 AEELEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIAAAL------LALLGLGGSLLSL 271
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 273 LQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRLQynek 352
Cdd:COG4717 272 ILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIE---- 347
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 353 scgELQEELVMAKKHQAFLveTCENNVRELESILGSFSVS--AQWTSGVHKDKDKppsfsvvlETLRRTLTDYQNKLEDA 430
Cdd:COG4717 348 ---ELQELLREAEELEEEL--QLEELEQEIAALLAEAGVEdeEELRAALEQAEEY--------QELKEELEELEEQLEEL 414
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 431 SNELNNINDAKEKTS--NELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRA--KCADREALITSLKVELQNVLHCWEK 506
Cdd:COG4717 415 LGELEELLEALDEEEleEELEELEEELEELEEELEELREELAELEAELEQLEEdgELAELLQELEELKAELRELAEEWAA 494
|
490 500
....*....|....*....|
gi 568926835 507 EKACAAQCESELQKLSQAFQ 526
Cdd:COG4717 495 LKLALELLEEAREEYREERL 514
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
68-366 |
5.15e-04 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 44.75 E-value: 5.15e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 68 QIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEIEKTFQISQEKwrEEC 147
Cdd:PTZ00121 1167 EEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEE--ARKAEDAKKAEAVKKAEEAKKDA--EEA 1242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 148 RRFEhdlEERDNiiQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQL-------EAEHMDCSDLLRRQTSElefs 220
Cdd:PTZ00121 1243 KKAE---EERNN--EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKkkadeakKAEEKKKADEAKKKAEE---- 1313
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 221 TQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESA 300
Cdd:PTZ00121 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA 1393
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926835 301 yEREKQNTQESCAKLNLLEREYFSQNK--KLNEEIEDQKKViiDLSKRLQYNEKSCGELQEELVMAKK 366
Cdd:PTZ00121 1394 -DEAKKKAEEDKKKADELKKAAAAKKKadEAKKKAEEKKKA--DEAKKKAEEAKKADEAKKKAEEAKK 1458
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
64-201 |
6.18e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 44.08 E-value: 6.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 64 SYESQIARLRSEVEKG-----------------EALRQRLEYDLAVARKEAGLGRRAAEERLAEAQ-RIQ------ERLC 119
Cdd:COG2433 347 AYKNKFERVEKKVPPDvdrdevkarvirglsieEALEELIEKELPEEEPEAEREKEHEERELTEEEeEIRrleeqvERLE 426
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 120 AQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERdniiqncnQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQL 199
Cdd:COG2433 427 AEVEELEAELEEKDERIERLERELSEARSEERREIRKD--------REISRLDREIERLERELEEERERIEELKRKLERL 498
|
..
gi 568926835 200 EA 201
Cdd:COG2433 499 KE 500
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
130-761 |
9.90e-04 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.50 E-value: 9.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 130 NEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQktLQEQDSAVQSMQKKVEQLE-AEHMDCSD 208
Cdd:TIGR00606 304 NDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQ--LQADRHQEHIRARDSLIQSlATRLELDG 381
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 209 LLRRQTSELE---FSTQREERLRKEFEATTLRVRKLEENIEAERAAHLEskfnseiIQLRIRDLEGALQVEKASQAEAVA 285
Cdd:TIGR00606 382 FERGPFSERQiknFHTLVIERQEDEAKTAAQLCADLQSKERLKQEQADE-------IRDEKKGLGRTIELKKEILEKKQE 454
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 286 DLEMIKNEFKEVESAYER---EKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRL------QYNEKSCGE 356
Cdd:TIGR00606 455 ELKFVIKELQQLEGSSDRileLDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKldqemeQLNHHTTTR 534
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 357 LQEELVMAKKHQAF--LVETCENNVRELESILGSFSVSAQWTSGVHKDKDKppsfsvvLETLRRTLTDYQNKLEDASNEL 434
Cdd:TIGR00606 535 TQMEMLTKDKMDKDeqIRKIKSRHSDELTSLLGYFPNKKQLEDWLHSKSKE-------INQTRDRLAKLNKELASLEQNK 607
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 435 NNINDAKEKTSNELDSTKQKI------ETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHCWE--- 505
Cdd:TIGR00606 608 NHINNELESKEEQLSSYEDKLfdvcgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQrvf 687
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 506 KEKACAAQCESELQKLSQAFQKDSEEKLTFLHTLYQH--LVAGCVLIKQPEGMLDKFSWSELCAVLQENVDALIADLNRA 583
Cdd:TIGR00606 688 QTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRrdEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDI 767
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 584 NEKISHLEYI---------CKNKSDTMRELQQTQEDTFNKVAEQIKaqescwQKQKKELEFQYSELLLEVQRRAQKFQEI 654
Cdd:TIGR00606 768 EEQETLLGTImpeeesakvCLTDVTIMERFQMELKDVERKIAQQAA------KLQGSDLDRTVQQVNQEKQEKQHELDTV 841
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 655 AEKNSEKLNRIETSHEQLvrenSHFKTTLSRTQREQTCL---LAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLELF 731
Cdd:TIGR00606 842 VSKIELNRKLIQDQQEQI----QHLKSKTNELKSEKLQIgtnLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917
|
650 660 670
....*....|....*....|....*....|
gi 568926835 732 KLEIRTLAQALSAVDEKKQEEAKTKKKTFK 761
Cdd:TIGR00606 918 LEKDQQEKEELISSKETSNKKAQDKVNDIK 947
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
57-366 |
1.20e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.59 E-value: 1.20e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 57 KHNAELSSYESQIaRLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAE-AQRIQERLCAQNSELQGKANEIEKT 135
Cdd:PTZ00121 1085 EDNRADEATEEAF-GKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEdARKAEEARKAEDAKRVEIARKAEDA 1163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 136 FQISQEKWREECRRFE--------------HDLEERDNIIQNCNQEYESLMQEKTRLQ--KTLQEQDSAVQSMQKKVEQL 199
Cdd:PTZ00121 1164 RKAEEARKAEDAKKAEaarkaeevrkaeelRKAEDARKAEAARKAEEERKAEEARKAEdaKKAEAVKKAEEAKKDAEEAK 1243
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 200 EAEHMDCSDLLRR-QTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKA 278
Cdd:PTZ00121 1244 KAEEERNNEEIRKfEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 279 SQaEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIE---------DQKKVIIDLSKRLQY 349
Cdd:PTZ00121 1324 AE-EAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKkadaakkkaEEKKKADEAKKKAEE 1402
|
330
....*....|....*..
gi 568926835 350 NEKSCGELQEELVMAKK 366
Cdd:PTZ00121 1403 DKKKADELKKAAAAKKK 1419
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
14-694 |
1.35e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 43.03 E-value: 1.35e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 14 TQRLKNASLDVKQMLKNETESdiIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAVA 93
Cdd:TIGR00618 200 TLRSQLLTLCTPCMPDTYHER--KQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEA 277
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 94 RKE---AGLGRRAAEERLAEAQR----IQERLCAQNSELQGKANEIEKTFQ-----ISQEKWREECRRFEHDLEERDNII 161
Cdd:TIGR00618 278 VLEetqERINRARKAAPLAAHIKavtqIEQQAQRIHTELQSKMRSRAKLLMkraahVKQQSSIEEQRRLLQTLHSQEIHI 357
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 162 QNCNQE----YESLMQEKTRLQ--KTLQEQDSAV----QSMQKKVEQLEAEHMDCSDLLRRQTSElefsTQREERLRKEF 231
Cdd:TIGR00618 358 RDAHEVatsiREISCQQHTLTQhiHTLQQQKTTLtqklQSLCKELDILQREQATIDTRTSAFRDL----QGQLAHAKKQQ 433
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 232 EATTLRVRKLEENIE-------AERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNE---FKEVESAY 301
Cdd:TIGR00618 434 ELQQRYAELCAAAITctaqcekLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEEpcpLCGSCIHP 513
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 302 EREKQNTQESCAKLNLLEReYFSQNKKLNEEIEDQKKVIIDLSKRLQ-YNEKSCGELQEELVMAKKHQAfLVETCENNVR 380
Cdd:TIGR00618 514 NPARQDIDNPGPLTRRMQR-GEQTYAQLETSEEDVYHQLTSERKQRAsLKEQMQEIQQSFSILTQCDNR-SKEDIPNLQN 591
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 381 ELESILgsfsvsaQWTSGVHKDKDKPPSFS-VVLETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHI 459
Cdd:TIGR00618 592 ITVRLQ-------DLTEKLSEAEDMLACEQhALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHA 664
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 460 KNTKELQDKLTEVhkelshlrakcadREALITSLKVELQNVLHCWEKEKACAAQCESELQKLSQaFQKDSEEKLTFLHTL 539
Cdd:TIGR00618 665 LSIRVLPKELLAS-------------RQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEE-YDREFNEIENASSSL 730
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 540 YQHLVAGCVLIKQPEGMLDKFSWSELCAvlQENVDAliadlnRANEKISHLEYICKNKSDTMRELQQTQEDTFNKVAEQI 619
Cdd:TIGR00618 731 GSDLAAREDALNQSLKELMHQARTVLKA--RTEAHF------NNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLK 802
|
650 660 670 680 690 700 710
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 620 KAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKnSEKLNRIETSHEQLvRENSHFKTTLSRTQREQTCLL 694
Cdd:TIGR00618 803 TLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEK-SATLGEITHQLLKY-EECSKQLAQLTQEQAKIIQLS 875
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
438-668 |
1.36e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.36e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 438 NDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVlhcwEKEKACAAQCESE 517
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAAL----EAELAELEKEIAE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 518 LQKLSQAFQKDSEEKLTFLHTLYQHlvAGCVLIKQPEGMLDKFS----WSELCAVLQENVDALIADLNRANEKISHLEYI 593
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQ--PPLALLLSPEDFLDAVRrlqyLKYLAPARREQAEELRADLAELAALRAELEAE 172
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 594 CKNKSDTMRELQQTQEDTFNKVAEQIKAQESCwQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETS 668
Cdd:COG4942 173 RAELEALLAELEEERAALEALKAERQKLLARL-EKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
64-366 |
1.62e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 43.21 E-value: 1.62e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 64 SYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQERlcAQNSELQGKANEI----EKTFQIS 139
Cdd:PTZ00121 1169 ARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAED--AKKAEAVKKAEEAkkdaEEAKKAE 1246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 140 QEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQ-KKVEQL--EAEHMDCSDLLRRQTSE 216
Cdd:PTZ00121 1247 EERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEkKKADEAkkKAEEAKKADEAKKKAEE 1326
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 217 L-----------EFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQ----- 280
Cdd:PTZ00121 1327 AkkkadaakkkaEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEedkkk 1406
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 281 -------AEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKViiDLSKRLQYNEKS 353
Cdd:PTZ00121 1407 adelkkaAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA--DEAKKKAEEAKK 1484
|
330
....*....|...
gi 568926835 354 CGELQEELVMAKK 366
Cdd:PTZ00121 1485 ADEAKKKAEEAKK 1497
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
50-160 |
1.81e-03 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 42.26 E-value: 1.81e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 50 EKLEMTTKHNAELssyESQIARLRSEVEKGEALRQRLEYDLA-VARKEAGLGRRAAE--ERLAEAQRIQER-------LC 119
Cdd:PRK09039 67 DLLSLERQGNQDL---QDSVANLRASLSAAEAERSRLQALLAeLAGAGAAAEGRAGElaQELDSEKQVSARalaqvelLN 143
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 568926835 120 AQNSELQGKANEIEKTFQISQEKWREECRRFEhDLEERDNI 160
Cdd:PRK09039 144 QQIAALRRQLAALEAALDASEKRDRESQAKIA-DLGRRLNV 183
|
|
| PRK11281 |
PRK11281 |
mechanosensitive channel MscK; |
933-1099 |
1.84e-03 |
|
mechanosensitive channel MscK;
Pssm-ID: 236892 [Multi-domain] Cd Length: 1113 Bit Score: 42.59 E-value: 1.84e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 933 KSTAALQKQIFGFTQRLhaaeverRSLRLEVTEYKRTVHEMKKELDKSQS---LQTQLNEfkhskliTHEKFESACEELN 1009
Cdd:PRK11281 80 EETEQLKQQLAQAPAKL-------RQAQAELEALKDDNDEETRETLSTLSlrqLESRLAQ-------TLDQLQNAQNDLA 145
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1010 --NALLREQQ-----AQMLLNEQAQQLQELNYRLELHSSEEADKN---QTLGEAVKSLSEAKMELRRKD-------QSLR 1072
Cdd:PRK11281 146 eyNSQLVSLQtqperAQAALYANSQRLQQIRNLLKGGKVGGKALRpsqRVLLQAEQALLNAQNDLQRKSlegntqlQDLL 225
|
170 180
....*....|....*....|....*..
gi 568926835 1073 QLNRHLTQLEQDkrRLEENIRDAESAL 1099
Cdd:PRK11281 226 QKQRDYLTARIQ--RLEHQLQLLQEAI 250
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
942-1107 |
2.10e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.59 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 942 IFGFT--QRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLnefkhsklithekfeSACEELNNALLREQQAQ 1019
Cdd:COG4913 603 VLGFDnrAKLAALEAELAELEEELAEAEERLEALEAELDALQERREAL---------------QRLAEYSWDEIDVASAE 667
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1020 MLLNEQAQQLQELnyrlelhsseEADkNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESAL 1099
Cdd:COG4913 668 REIAELEAELERL----------DAS-SDDLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
....*...
gi 568926835 1100 RMAAKDKE 1107
Cdd:COG4913 737 EAAEDLAR 744
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
28-249 |
2.28e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 42.64 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 28 LKNETESDIIADLRKKLHRAKKEKLEMTtKHNAELSSYESQIARLRSEVEKGEALRQrlEYDLAVARKE---------AG 98
Cdd:PRK04863 887 LADETLADRVEEIREQLDEAEEAKRFVQ-QHGNALAQLEPIVSVLQSDPEQFEQLKQ--DYQQAQQTQRdakqqafalTE 963
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 99 LGRRAAEERLAEAQRIQERLCAQNSELQGKaneiektfqisQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRL 178
Cdd:PRK04863 964 VVQRRAHFSYEDAAEMLAKNSDLNEKLRQR-----------LEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAK 1032
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926835 179 QKTLQE-----QDSAVQSMQKKVEQLEAEHMDCSDLLRR---QTSELEFSTQREERlrkEFEATTLRVRKLEENIEAER 249
Cdd:PRK04863 1033 RQMLQElkqelQDLGVPADSGAEERARARRDELHARLSAnrsRRNQLEKQLTFCEA---EMDNLTKKLRKLERDYHEMR 1108
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
32-340 |
2.28e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 42.34 E-value: 2.28e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 32 TESDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDLAvaRKEAGLGRRAAEERLAEA 111
Cdd:TIGR00606 709 DKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIE--EQETLLGTIMPEEESAKV 786
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 112 QRIQERLCAQnseLQGKANEIEKtfQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQS 191
Cdd:TIGR00606 787 CLTDVTIMER---FQMELKDVER--KIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQH 861
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 192 MQKKVEQLEAEHMDCSDLLRRQTselEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEG 271
Cdd:TIGR00606 862 LKSKTNELKSEKLQIGTNLQRRQ---QFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKK 938
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926835 272 ALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVI 340
Cdd:TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDI 1007
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
946-1107 |
2.64e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.64e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 946 TQRLHAAEVERRSLRLEVTEYKRTVHEMKKELDKSQSLQTQLNEfkhskliTHEKFESACEELNNALLREQQAQMLLNEQ 1025
Cdd:COG1196 238 EAELEELEAELEELEAELEELEAELAELEAELEELRLELEELEL-------ELEEAQAEEYELLAELARLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1026 AQQLQELNYRLELhssEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKD 1105
Cdd:COG1196 311 RRELEERLEELEE---ELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEE 387
|
..
gi 568926835 1106 KE 1107
Cdd:COG1196 388 LL 389
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
960-1127 |
2.68e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 42.23 E-value: 2.68e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 960 RLEVTEYKRTVHEMKKELDKSQSLQTQLNEFKhsklithekfesacEELNNALLREQQAQMLLNEQAQQLQELNYRLELH 1039
Cdd:COG1196 221 ELKELEAELLLLKLRELEAELEELEAELEELE--------------AELEELEAELAELEAELEELRLELEELELELEEA 286
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 1040 SSEEADKNQTLGEAVKSLSEAKMELRRKDQSLRQLNRHLTQLEQDKRRLEENIRDAESALRMAAKDKECVANHMRTIENM 1119
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
....*...
gi 568926835 1120 LHKVRDQI 1127
Cdd:COG1196 367 LLEAEAEL 374
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
172-346 |
2.75e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 41.06 E-value: 2.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 172 MQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAa 251
Cdd:COG1579 2 MPEDLRALLDLQELDSELDRLEHRLKELPAE-------LAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEA- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 252 hLESKFNSEIIQLR-IRDLEgALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQNTQEscaKLNLLEREYFSQNKKLN 330
Cdd:COG1579 74 -RIKKYEEQLGNVRnNKEYE-ALQKEIESLKRRISDLEDEILELMERIEELEEELAELEA---ELAELEAELEEKKAELD 148
|
170
....*....|....*.
gi 568926835 331 EEIEDQKKVIIDLSKR 346
Cdd:COG1579 149 EELAELEAELEELEAE 164
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
37-237 |
2.89e-03 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 41.93 E-value: 2.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 37 IADLRKKLHRAKKEKLEMTTKHN-----AELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAGLGRRAAEErLAEA 111
Cdd:COG3206 184 LPELRKELEEAEAALEEFRQKNGlvdlsEEAKLLLQQLSELESQLAEARAELAEAEARLAALRAQLGSGPDALPE-LLQS 262
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 112 QRIQErLCAQNSELQGKANEIEKTFQISQEK---WREECRRFEHDL-EERDNIIQNCNQEYESLMQEKTRLQKTLQEQDS 187
Cdd:COG3206 263 PVIQQ-LRAQLAELEAELAELSARYTPNHPDviaLRAQIAALRAQLqQEAQRILASLEAELEALQAREASLQAQLAQLEA 341
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568926835 188 AVQSMQkkveQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLR 237
Cdd:COG3206 342 RLAELP----ELEAE-------LRRLEREVEVARELYESLLQRLEEARLA 380
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
441-782 |
3.40e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 41.85 E-value: 3.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 441 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRA-----------KCADREALITSLKVELQNVLHCWEKEKA 509
Cdd:COG1196 174 KEEAERKLEATEENLE-------RLEDILGELERQLEPLERqaekaeryrelKEELKELEAELLLLKLRELEAELEELEA 246
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 510 CAAQCESELQKLSQAFQKDSEEKLTFLHTLYQhlvagcvlikqpegmldkfswselcavLQENVDALIADLNRANEKISH 589
Cdd:COG1196 247 ELEELEAELEELEAELAELEAELEELRLELEE---------------------------LELELEEAQAEEYELLAELAR 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 590 LEYICKNKSDTMRELQQTQEDTfNKVAEQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSEKLNRIETSH 669
Cdd:COG1196 300 LEQDIARLEERRRELEERLEEL-EEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAE 378
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 670 EQLVRENSHFKTTLSRTQREQTCLLAACALMAGALcplySRSCALSTQRDFLQEQVNSLELFKLEIRTLAQALSAVDEKK 749
Cdd:COG1196 379 EELEELAEELLEALRAAAELAAQLEELEEAEEALL----ERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
330 340 350
....*....|....*....|....*....|...
gi 568926835 750 QEEAKTKKKTFKGLVRVFRKGVIAILAANRLKL 782
Cdd:COG1196 455 EEEEEALLELLAELLEEAALLEAALAELLEELA 487
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
37-242 |
4.65e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 41.18 E-value: 4.65e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 37 IADLRKKLHRAKK--------EKLEMTTKHNAELssYESQIARLRSEVEKGEALRQRLEyDLavaRKEAGLGRRAAEERL 108
Cdd:PRK02224 491 VEEVEERLERAEDlveaedriERLEERREDLEEL--IAERRETIEEKRERAEELRERAA-EL---EAEAEEKREAAAEAE 564
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 109 AEAQRIQERLCAQNSELQGKANEIEKTFQI-SQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQE--Q 185
Cdd:PRK02224 565 EEAEEAREEVAELNSKLAELKERIESLERIrTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAefD 644
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 568926835 186 DSAVQSMQKKVEQLEAEHMDCSDLLRRQTSE----------LEFSTQREERLRKEFEATTLRVRKLE 242
Cdd:PRK02224 645 EARIEEAREDKERAEEYLEQVEEKLDELREErddlqaeigaVENELEELEELRERREALENRVEALE 711
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
441-749 |
5.40e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 41.21 E-value: 5.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 441 KEKTSNELDSTKQKIEthikntkELQDKLTEVHKELSHLRAKCADRE---ALITSL-KVELQNVLHCWEKEKACAAQCES 516
Cdd:TIGR02169 172 KEKALEELEEVEENIE-------RLDLIIDEKRQQLERLRREREKAEryqALLKEKrEYEGYELLKEKEALERQKEAIER 244
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 517 ELQKLSQAFQKDSEEkltfLHTLYQHLVAGCVLIKQPEGMLDKFSWSELCAVlQENVDALIADLNRANEKISHLEyicKN 596
Cdd:TIGR02169 245 QLASLEEELEKLTEE----ISELEKRLEEIEQLLEELNKKIKDLGEEEQLRV-KEKIGELEAEIASLERSIAEKE---RE 316
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 597 KSDTMRELQQTQEDTFNKVA--EQIKAQESCWQKQKKELEFQYSELLLEVQRRAQKFQEIAEKNSE---KLNRIETSHEQ 671
Cdd:TIGR02169 317 LEDAEERLAKLEAEIDKLLAeiEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAEtrdELKDYREKLEK 396
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 568926835 672 LVRENSHFKTTLSRTQREQTCLLAACALMAGALCPLYSRSCALSTQRDFLQEQVNSLElfkLEIRTLAQALSAVDEKK 749
Cdd:TIGR02169 397 LKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQE---WKLEQLAADLSKYEQEL 471
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
25-260 |
6.45e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 6.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 25 KQMLKNETESDIIADLRKKLHRAKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEYDlavaRKEAGLGRRAA 104
Cdd:PTZ00121 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEE----KKKAEELKKAE 1725
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 105 EERLAEAQRIQERLCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQE 184
Cdd:PTZ00121 1726 EENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFD 1805
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926835 185 QDSAVQSMQKKveqleaehmdcSDLLRRQTSELEFSTQREERLRKEF---EATTLRVRKLEENIEAERAAHLESKFNSE 260
Cdd:PTZ00121 1806 NFANIIEGGKE-----------GNLVINDSKEMEDSAIKEVADSKNMqleEADAFEKHKFNKNNENGEDGNKEADFNKE 1873
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
61-268 |
6.82e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 6.82e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 61 ELSSYESQIARLRSEVEKGEALRQRLEYDLAVARKEAglgrRAAEERLAEAQRIQERLcaqNSELQGKANEIEKtfqisq 140
Cdd:COG1579 11 DLQELDSELDRLEHRLKELPAELAELEDELAALEARL----EAAKTELEDLEKEIKRL---ELEIEEVEARIKK------ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 141 ekwreecrrfehdLEERDNIIQNcNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFS 220
Cdd:COG1579 78 -------------YEEQLGNVRN-NKEYEALQKEIESLKRRISDLEDEILELMERIEELEEE-------LAELEAELAEL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 568926835 221 TQREERLRKEFEATTLRVRKLEENIEAERAAhLESKFNSEIIQL--RIRD 268
Cdd:COG1579 137 EAELEEKKAELDEELAELEAELEELEAEREE-LAAKIPPELLALyeRIRK 185
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
413-486 |
7.84e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 40.20 E-value: 7.84e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 568926835 413 LETLRRTLTDYQNKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADR 486
Cdd:COG3883 18 IQAKQKELSELQAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGER 91
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
38-503 |
7.91e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 40.80 E-value: 7.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 38 ADLRKKLHRAKKEKLEMttkhNAELSSYESQIARLRSEVEKGEAlrQRLEYDLAVARKEAGLGRRAAEERLAEAQRIQER 117
Cdd:TIGR00606 322 VDCQRELEKLNKERRLL----NQEKTELLVEQGRLQLQADRHQE--HIRARDSLIQSLATRLELDGFERGPFSERQIKNF 395
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 118 LCAQNSELQGKANEIEKTFQISQEKWREECRRFEHDLEERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVE 197
Cdd:TIGR00606 396 HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILE 475
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 198 QLEAEHMDCSDLLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIEAERAAHLESKFNSEIIQL-------RIRDLE 270
Cdd:TIGR00606 476 LDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRKLRKLDQEMEQLNHHTTTRTQMEMLTKdkmdkdeQIRKIK 555
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 271 GALQVEKASQAEAVADLEMIKNEFKEVEsayeREKQNTQESCAKLNLLEREYFSQNKKLNEEIEDQKKVIIDLSKRL--- 347
Cdd:TIGR00606 556 SRHSDELTSLLGYFPNKKQLEDWLHSKS----KEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLfdv 631
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 348 ---QYNEKSCGELQEELVMAKKHQAFLVETCENNVRELESILGSFSVSAQWTSGVHKDKDKPPSFSVVLETLRRTLTDyq 424
Cdd:TIGR00606 632 cgsQDEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPD-- 709
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 568926835 425 nKLEDASNELNNINDAKEKTSNELDSTKQKIETHIKNTKELQDKLTEVHKELSHLRAKCADREALITSLKVELQNVLHC 503
Cdd:TIGR00606 710 -KLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVC 787
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
161-306 |
8.10e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 39.52 E-value: 8.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 161 IQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMDCSDLLRRQTSELEFSTQREERLR---------KEF 231
Cdd:COG1579 12 LQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKRLELEIEEVEARIKKYEeqlgnvrnnKEY 91
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 568926835 232 EATTLRVRKLEENIEAERAAHLESKFNSEIIQLRIRDLEGALQVEKASQAEAVADLEMIKNEFKEVESAYEREKQ 306
Cdd:COG1579 92 EALQKEIESLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAELEELEAERE 166
|
|
| PRK01156 |
PRK01156 |
chromosome segregation protein; Provisional |
47-476 |
9.09e-03 |
|
chromosome segregation protein; Provisional
Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 40.27 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 47 AKKEKLEMTTKHNAELSSYESQIARLRSEVEKGEALRQRLEyDLAVARKEAGLGRRaaeeRLAEAQRIQERLCAQNSELQ 126
Cdd:PRK01156 292 KNRNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLS-VLQKDYNDYIKKKS----RYDDLNNQILELEGYEMDYN 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 127 GKANEIEktfqiSQEKWREECRRFEHDL-EERDNIIQNCNQEYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEHMD 205
Cdd:PRK01156 367 SYLKSIE-----SLKKKIEEYSKNIERMsAFISEILKIQEIDPDAIKKELNEINVKLQDISSKVSSLNQRIRALRENLDE 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 206 csdlLRRQTSELE-----------FSTQREERLRKEFEATTLR----VRKLEENIEA--ERAAHLEsKFNSEIIQLRIRD 268
Cdd:PRK01156 442 ----LSRNMEMLNgqsvcpvcgttLGEEKSNHIINHYNEKKSRleekIREIEIEVKDidEKIVDLK-KRKEYLESEEINK 516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 269 LEGALQVEKASQAEaVADLEMIKNEFKEVESAYEREKQntQESCAKLNLLEREYFSQNK-----------KLNEEIEDQK 337
Cdd:PRK01156 517 SINEYNKIESARAD-LEDIKIKINELKDKHDKYEEIKN--RYKSLKLEDLDSKRTSWLNalavislidieTNRSRSNEIK 593
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 338 KVIIDLSKRLQ-----------YNEKSCGELQEElvmakkhqaflVETCENNVRELESIlgsfsvsaqwtsgvhkdkdkp 406
Cdd:PRK01156 594 KQLNDLESRLQeieigfpddksYIDKSIREIENE-----------ANNLNNKYNEIQEN--------------------- 641
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 407 psfSVVLETLRRTLTDY----------QNKLEDASNELNNINDAKEKTSNELDST-------KQKIETHIKNTKELQDKL 469
Cdd:PRK01156 642 ---KILIEKLRGKIDNYkkqiaeidsiIPDLKEITSRINDIEDNLKKSRKALDDAkanrarlESTIEILRTRINELSDRI 718
|
....*..
gi 568926835 470 TEVHKEL 476
Cdd:PRK01156 719 NDINETL 725
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
167-366 |
9.48e-03 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 39.81 E-value: 9.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 167 EYESLMQEKTRLQKTLQEQDSAVQSMQKKVEQLEAEhmdcsdlLRRQTSELEFSTQREERLRKEFEATTLRVRKLEENIe 246
Cdd:COG3883 17 QIQAKQKELSELQAELEAAQAELDALQAELEELNEE-------YNELQAELEALQAEIDKLQAEIAEAEAEIEERREEL- 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568926835 247 AERAAHL-ESKFNSEIIQ--LRIRDLEGALQVEKASQAEAVADLEMIkNEFKEVESAYEREKQNTQESCAKLNLLEREYF 323
Cdd:COG3883 89 GERARALyRSGGSVSYLDvlLGSESFSDFLDRLSALSKIADADADLL-EELKADKAELEAKKAELEAKLAELEALKAELE 167
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 568926835 324 SQNKKLNEEIEDQKKVIIDLSKRLQYNEKSCGELQEELVMAKK 366
Cdd:COG3883 168 AAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELAAAEA 210
|
|
| |
