NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|568931862|ref|XP_006539223|]
View 

zinc finger protein castor homolog 1 isoform X3 [Mus musculus]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
PHA03247 super family cl33720
large tegument protein UL36; Provisional
823-1182 4.55e-06

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  823 TTPYFPLLPNRGSASL-PVGSPGLLGSMSSGATTSATPDMPALMASRAGDSAPTAATsLSVPPASIIERISASKGLISPM 901
Cdd:PHA03247 2587 RRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPR 2665
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  902 MARLAAAALKPSATFDPGSGQQPTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKDPSNESNGHAVSANSSLLSSL 981
Cdd:PHA03247 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  982 MNKMSQGNPSlesflsiKTEAEGSPAGEPSPFLGKAVKALVQEKLSEPWKVYLrrfgtkdfcdaqcdflhkahfhcvVEE 1061
Cdd:PHA03247 2746 AGPATPGGPA-------RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL------------------------SES 2794
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862 1062 CGALFSTLDGAIKHANFHFRTEGGTAKGTPEASF--PTSAAETKPPLAPSSLP---APPGTMVAGSSL--EGPAPSPVSV 1134
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppPTSAQPTAPPPPPGPPPpslPLGGSVAPGGDVrrRPPSRSPAAK 2874
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568931862 1135 PSTPTLLAWKQLASTIPQ-----MPQIPSSVPHLPTSPLATTSLESAKPQVKP 1182
Cdd:PHA03247 2875 PAAPARPPVRRLARPAVSrstesFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
823-1182 4.55e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  823 TTPYFPLLPNRGSASL-PVGSPGLLGSMSSGATTSATPDMPALMASRAGDSAPTAATsLSVPPASIIERISASKGLISPM 901
Cdd:PHA03247 2587 RRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPR 2665
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  902 MARLAAAALKPSATFDPGSGQQPTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKDPSNESNGHAVSANSSLLSSL 981
Cdd:PHA03247 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  982 MNKMSQGNPSlesflsiKTEAEGSPAGEPSPFLGKAVKALVQEKLSEPWKVYLrrfgtkdfcdaqcdflhkahfhcvVEE 1061
Cdd:PHA03247 2746 AGPATPGGPA-------RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL------------------------SES 2794
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862 1062 CGALFSTLDGAIKHANFHFRTEGGTAKGTPEASF--PTSAAETKPPLAPSSLP---APPGTMVAGSSL--EGPAPSPVSV 1134
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppPTSAQPTAPPPPPGPPPpslPLGGSVAPGGDVrrRPPSRSPAAK 2874
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568931862 1135 PSTPTLLAWKQLASTIPQ-----MPQIPSSVPHLPTSPLATTSLESAKPQVKP 1182
Cdd:PHA03247 2875 PAAPARPPVRRLARPAVSrstesFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
1081-1139 1.18e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 1.18e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568931862  1081 RTEGGTAKGTPEASFPTSAAE--TKPPLAPSS--LPAPPGTMVAGSSLEGPAPSPVSVPSTPT 1139
Cdd:TIGR00601   76 KPKTGTGKVAPPAATPTSAPTptPSPPASPASgmSAAPASAVEEKSPSEESATATAPESPSTS 138
 
Name Accession Description Interval E-value
PHA03247 PHA03247
large tegument protein UL36; Provisional
823-1182 4.55e-06

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 51.86  E-value: 4.55e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  823 TTPYFPLLPNRGSASL-PVGSPGLLGSMSSGATTSATPDMPALMASRAGDSAPTAATsLSVPPASIIERISASKGLISPM 901
Cdd:PHA03247 2587 RRPDAPPQSARPRAPVdDRGDPRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPP-PTVPPPERPRDDPAPGRVSRPR 2665
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  902 MARLAAAALKPSATFDPGSGQQPTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKDPSNESNGHAVSANSSLLSSL 981
Cdd:PHA03247 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVP 2745
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862  982 MNKMSQGNPSlesflsiKTEAEGSPAGEPSPFLGKAVKALVQEKLSEPWKVYLrrfgtkdfcdaqcdflhkahfhcvVEE 1061
Cdd:PHA03247 2746 AGPATPGGPA-------RPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASL------------------------SES 2794
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568931862 1062 CGALFSTLDGAIKHANFHFRTEGGTAKGTPEASF--PTSAAETKPPLAPSSLP---APPGTMVAGSSL--EGPAPSPVSV 1134
Cdd:PHA03247 2795 RESLPSPWDPADPPAAVLAPAAALPPAASPAGPLppPTSAQPTAPPPPPGPPPpslPLGGSVAPGGDVrrRPPSRSPAAK 2874
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 568931862 1135 PSTPTLLAWKQLASTIPQ-----MPQIPSSVPHLPTSPLATTSLESAKPQVKP 1182
Cdd:PHA03247 2875 PAAPARPPVRRLARPAVSrstesFALPPDQPERPPQPQAPPPPQPQPQPPPPP 2927
rad23 TIGR00601
UV excision repair protein Rad23; All proteins in this family for which functions are known ...
1081-1139 1.18e-03

UV excision repair protein Rad23; All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 273167 [Multi-domain]  Cd Length: 378  Bit Score: 43.35  E-value: 1.18e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 568931862  1081 RTEGGTAKGTPEASFPTSAAE--TKPPLAPSS--LPAPPGTMVAGSSLEGPAPSPVSVPSTPT 1139
Cdd:TIGR00601   76 KPKTGTGKVAPPAATPTSAPTptPSPPASPASgmSAAPASAVEEKSPSEESATATAPESPSTS 138
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH