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Conserved domains on  [gi|568947974|ref|XP_006540998|]
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transcription factor Spi-B isoform X3 [Mus musculus]

Protein Classification

ETS domain-containing protein (domain architecture ID 10648030)

ETS (erythroblast transformation specific) domain-containing protein may function as a transcriptional regulator

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
174-262 2.48e-30

erythroblast transformation specific domain; variation of the helix-turn-helix motif


:

Pssm-ID: 197710  Cd Length: 87  Bit Score: 108.89  E-value: 2.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568947974   174 KLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKelLARRWGQQKgNRKRMTYQKLARALRNYAKTGEIRKV-KRK 252
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEE--VARLWGQRK-NKPNMNYEKLSRALRYYYKKNILEKVpGKR 77
                           90
                   ....*....|
gi 568947974   253 LTYQFDSALL 262
Cdd:smart00413  78 LVYKFVKNPL 87
 
Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
174-262 2.48e-30

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 108.89  E-value: 2.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568947974   174 KLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKelLARRWGQQKgNRKRMTYQKLARALRNYAKTGEIRKV-KRK 252
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEE--VARLWGQRK-NKPNMNYEKLSRALRYYYKKNILEKVpGKR 77
                           90
                   ....*....|
gi 568947974   253 LTYQFDSALL 262
Cdd:smart00413  78 LVYKFVKNPL 87
Ets pfam00178
Ets-domain;
176-257 3.11e-28

Ets-domain;


Pssm-ID: 395126  Cd Length: 80  Bit Score: 102.96  E-value: 3.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568947974  176 RLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKelLARRWGQQKGNRKrMTYQKLARALRNYAKTGEIRKVK-RKLT 254
Cdd:pfam00178   1 QLWQFLLDLLTDPSYSDIIRWTDKEEGEFRLVDPEA--VARLWGKRKGNPK-MTYEKLSRALRYYYKKGILEKVPgKRLT 77

                  ...
gi 568947974  255 YQF 257
Cdd:pfam00178  78 YRF 80
 
Name Accession Description Interval E-value
ETS smart00413
erythroblast transformation specific domain; variation of the helix-turn-helix motif
174-262 2.48e-30

erythroblast transformation specific domain; variation of the helix-turn-helix motif


Pssm-ID: 197710  Cd Length: 87  Bit Score: 108.89  E-value: 2.48e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568947974   174 KLRLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKelLARRWGQQKgNRKRMTYQKLARALRNYAKTGEIRKV-KRK 252
Cdd:smart00413   1 GIQLWQFLLDLLLDPENSDIIKWTDRDEGEFKLVDPEE--VARLWGQRK-NKPNMNYEKLSRALRYYYKKNILEKVpGKR 77
                           90
                   ....*....|
gi 568947974   253 LTYQFDSALL 262
Cdd:smart00413  78 LVYKFVKNPL 87
Ets pfam00178
Ets-domain;
176-257 3.11e-28

Ets-domain;


Pssm-ID: 395126  Cd Length: 80  Bit Score: 102.96  E-value: 3.11e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 568947974  176 RLYQFLLGLLLRGDMRECVWWVEPGAGVFQFSSKHKelLARRWGQQKGNRKrMTYQKLARALRNYAKTGEIRKVK-RKLT 254
Cdd:pfam00178   1 QLWQFLLDLLTDPSYSDIIRWTDKEEGEFRLVDPEA--VARLWGKRKGNPK-MTYEKLSRALRYYYKKGILEKVPgKRLT 77

                  ...
gi 568947974  255 YQF 257
Cdd:pfam00178  78 YRF 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.19
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
  • Marchler-Bauer A et al. (2015), "CDD: NCBI's conserved domain database.", Nucleic Acids Res.43(D)222-6.
  • Marchler-Bauer A et al. (2011), "CDD: a Conserved Domain Database for the functional annotation of proteins.", Nucleic Acids Res.39(D)225-9.
  • Marchler-Bauer A, Bryant SH (2004), "CD-Search: protein domain annotations on the fly.", Nucleic Acids Res.32(W)327-331.
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