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Conserved domains on  [gi|578831207|ref|XP_006722064|]
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DNA repair protein RAD51 homolog 3 isoform X1 [Homo sapiens]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Rad51C cd19492
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ...
118-331 1.06e-102

RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.


:

Pssm-ID: 410900 [Multi-domain]  Cd Length: 172  Bit Score: 300.30  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 118 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 197
Cdd:cd19492    1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 198 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHR 277
Cdd:cd19492   48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 578831207 278 LAVILTNQMTTKIDRN-QALLVPALGESWGHAATIRLIFHWDRKQsRLATLYKSP 331
Cdd:cd19492  119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
Sms super family cl34087
Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, ...
70-139 9.28e-05

Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones];


The actual alignment was detected with superfamily member COG1066:

Pssm-ID: 223993 [Multi-domain]  Cd Length: 456  Bit Score: 44.13  E-value: 9.28e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  70 TNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSaLDDILGGGVPLMKTTEICGAPGVGKTQLCMQLA 139
Cdd:COG1066   46 PNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEE-LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA 114
 
Name Accession Description Interval E-value
Rad51C cd19492
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ...
118-331 1.06e-102

RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.


Pssm-ID: 410900 [Multi-domain]  Cd Length: 172  Bit Score: 300.30  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 118 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 197
Cdd:cd19492    1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 198 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHR 277
Cdd:cd19492   48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 578831207 278 LAVILTNQMTTKIDRN-QALLVPALGESWGHAATIRLIFHWDRKQsRLATLYKSP 331
Cdd:cd19492  119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
recomb_radA TIGR02236
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ...
21-349 8.00e-50

DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 131290 [Multi-domain]  Cd Length: 310  Bit Score: 169.54  E-value: 8.00e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   21 PAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECltnkpryagtsESHKKCTALELLEQEHTQGFI 100
Cdd:TIGR02236   9 PATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAA-----------DLGGFETADDVLERRKTIGKI 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  101 ITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhl 180
Cdd:TIGR02236  78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA------- 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  181 qliaekhkgeEHRKALEDFTLDNilshIYYFRCRDYTELLAQVYLLPDFLSEHSK-VRLVIVDGIAFPFRHDL---DDLS 256
Cdd:TIGR02236 151 ----------EARGLDPDEVLKN----IYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALA 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  257 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPS 332
Cdd:TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPH 293
                         330
                  ....*....|....*..
gi 578831207  333 QKECTVLFQIKPQGFRD 349
Cdd:TIGR02236 294 LPEGEAVFRITEKGIED 310
radA PRK04301
DNA repair and recombination protein RadA; Validated
10-349 2.47e-48

DNA repair and recombination protein RadA; Validated


Pssm-ID: 235273 [Multi-domain]  Cd Length: 317  Bit Score: 165.82  E-value: 2.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  10 MQRDLVSFP-LSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALetlQIIR--RECLTnkpryAGTSEshkkcT 86
Cdd:PRK04301   4 KEKDLEDLPgVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAA---KIIEaaREAAD-----IGGFE-----T 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Cdd:PRK04301  71 ALEVLERRKNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 167 DRVVDLAtaciqhlqliaekhkgeEHRKALEDFTLDNilshIYYFRCR--DYTELLAQVylLPDFLSEHSKVRLVIVDGI 244
Cdd:PRK04301 151 ERIEQMA-----------------EALGLDPDEVLDN----IHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSL 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 245 AFPFRHD---LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHW 317
Cdd:PRK04301 208 TAHFRAEyvgRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRIYLRK 284
                        330       340       350
                 ....*....|....*....|....*....|..
gi 578831207 318 DRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:PRK04301 285 SKGNKRIARLVDSPHLPEGEAVFRITEEGIRD 316
Rad51 pfam08423
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ...
86-349 3.66e-44

Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.


Pssm-ID: 400636 [Multi-domain]  Cd Length: 255  Bit Score: 153.21  E-value: 3.66e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   86 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 165
Cdd:pfam08423   5 TATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  166 VDRVVDlataciqhlqlIAEKHK--GEEhrkaledfTLDNILShiyyfrCRDYT-----ELLAQvylLPDFLSEhSKVRL 238
Cdd:pfam08423  85 PERLVA-----------IAERYGldPED--------VLDNIAY------ARAYNsehqmQLLQQ---AAAMMSE-SRFAL 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  239 VIVDGIAFPFRHD---LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAAT 310
Cdd:pfam08423 136 LIVDSATALYRTDfsgRGELAERQQHLGKFLRTLQRLADEFGVAVVITNQVVAQVDGQAAMFSgdpkkPIGGHIMAHAST 215
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 578831207  311 IRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:pfam08423 216 TRLSLRKGRGEQRVCKIYDSPCLPESEAVFAIGSGGIID 254
RecA COG0468
RecA/RadA recombinase [Replication, recombination and repair];
86-349 1.98e-38

RecA/RadA recombinase [Replication, recombination and repair];


Pssm-ID: 223544 [Multi-domain]  Cd Length: 279  Bit Score: 138.96  E-value: 1.98e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  86 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFM 165
Cdd:COG0468   28 MALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPG------GKAAFIDTEHALD 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 166 VDRVVDLAtaciqhlqliaekhkgeehrkaledftlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhsKVRLVIVDGIA 245
Cdd:COG0468  102 PERAKQLG----------------------------VDLLDNLLVSQPDTGEQQLEIAEKLARSGAE--KIDLLVVDSVA 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 246 FPFRHDL---DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRL------IF 315
Cdd:COG0468  152 ALVRAEEiedGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDpETTTGGNALKFYASVRLdlrrieSL 231
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 578831207 316 HWDRKQSRLATLYKSPSQKE-CTVLFQIKPQGFRD 349
Cdd:COG0468  232 KEDVGNKRRVKVVKNKVAPPfKEAEFDITYGGGID 266
Sms COG1066
Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, ...
70-139 9.28e-05

Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 223993 [Multi-domain]  Cd Length: 456  Bit Score: 44.13  E-value: 9.28e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  70 TNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSaLDDILGGGVPLMKTTEICGAPGVGKTQLCMQLA 139
Cdd:COG1066   46 PNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEE-LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA 114
 
Name Accession Description Interval E-value
Rad51C cd19492
RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair ...
118-331 1.06e-102

RAD51C recombinase; RAD51C recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51C, together with the other RAD51 paralogs, RAD51B, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site. Additionally, RAD51C acts as a mediator in the early steps of DNA damage signaling.


Pssm-ID: 410900 [Multi-domain]  Cd Length: 172  Bit Score: 300.30  E-value: 1.06e-102
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 118 MKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFmvdrvvdlataciqhlqliaekhkgeehrkale 197
Cdd:cd19492    1 GKITEICGVPGVGKTQLCMQLAVNVQIPKCFGGLAGEAIYIDTEGSF--------------------------------- 47
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 198 dftldnilsHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDDLSLRTRLLNGLAQQMISLANNHR 277
Cdd:cd19492   48 ---------NIHYFRVHDYVELLALINSLPKFLEDHPKVKLIVVDSIAFPFRHDFDDLAQRTRLLNGLAQLLHSLARQHN 118
                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 578831207 278 LAVILTNQMTTKIDRN-QALLVPALGESWGHAATIRLIFHWDRKQsRLATLYKSP 331
Cdd:cd19492  119 LAVVLTNQVTTKISEDgQSQLVPALGESWSHACTTRLFLTWDEKQ-RFAHLYKSP 172
recomb_radA TIGR02236
DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA ...
21-349 8.00e-50

DNA repair and recombination protein RadA; This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. [DNA metabolism, DNA replication, recombination, and repair]


Pssm-ID: 131290 [Multi-domain]  Cd Length: 310  Bit Score: 169.54  E-value: 8.00e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   21 PAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECltnkpryagtsESHKKCTALELLEQEHTQGFI 100
Cdd:TIGR02236   9 PATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAA-----------DLGGFETADDVLERRKTIGKI 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  101 ITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhl 180
Cdd:TIGR02236  78 TTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMA------- 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  181 qliaekhkgeEHRKALEDFTLDNilshIYYFRCRDYTELLAQVYLLPDFLSEHSK-VRLVIVDGIAFPFRHDL---DDLS 256
Cdd:TIGR02236 151 ----------EARGLDPDEVLKN----IYVARAYNSNHQMLLVEKAEDLIKELNNpVKLLIVDSLTSHFRAEYvgrGALA 216
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  257 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPS 332
Cdd:TIGR02236 217 ERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTRPIGGHILGHAATFRVYLRKGKGDKRIARLVDSPH 293
                         330
                  ....*....|....*..
gi 578831207  333 QKECTVLFQIKPQGFRD 349
Cdd:TIGR02236 294 LPEGEAVFRITEKGIED 310
RecA-like cd01393
RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ...
119-317 4.63e-49

RecA family; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs RadA and RadB.


Pssm-ID: 410881 [Multi-domain]  Cd Length: 185  Bit Score: 163.68  E-value: 4.63e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 119 KTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFMVDRVVDLATACIQhlqliaekhkgeehrkalED 198
Cdd:cd01393    2 KITEIYGPPGSGKTQLALQLAANALLLG------GGVVWIDTEGAFPPSRLVQILEASPS------------------SE 57
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 199 FTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD-------LSLRTRLLNGLAQQMIS 271
Cdd:cd01393   58 LELAEALSRLLYFRPPDTLAHLLALDSLPESLFPPPNTSLVVVDSVSALFRKAFPRggdgdssSSLRARLLSQLARALQK 137
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*...
gi 578831207 272 LANNHRLAVILTNQMTTKID--RNQALLVPALGESWGHAATIRLIFHW 317
Cdd:cd01393  138 LAAQFNLAVVVTNQVTTKIRggSGASLVPPALGNTWEHSVSTRLLLYR 185
radA PRK04301
DNA repair and recombination protein RadA; Validated
10-349 2.47e-48

DNA repair and recombination protein RadA; Validated


Pssm-ID: 235273 [Multi-domain]  Cd Length: 317  Bit Score: 165.82  E-value: 2.47e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  10 MQRDLVSFP-LSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALetlQIIR--RECLTnkpryAGTSEshkkcT 86
Cdd:PRK04301   4 KEKDLEDLPgVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAA---KIIEaaREAAD-----IGGFE-----T 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  87 ALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMV 166
Cdd:PRK04301  71 ALEVLERRKNVGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRP 150
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 167 DRVVDLAtaciqhlqliaekhkgeEHRKALEDFTLDNilshIYYFRCR--DYTELLAQVylLPDFLSEHSKVRLVIVDGI 244
Cdd:PRK04301 151 ERIEQMA-----------------EALGLDPDEVLDN----IHVARAYnsDHQMLLAEK--AEELIKEGENIKLVIVDSL 207
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 245 AFPFRHD---LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDrnqAL----LVPALGESWGHAATIRLIFHW 317
Cdd:PRK04301 208 TAHFRAEyvgRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTNQVMARPD---AFfgdpTQPIGGHILGHTATFRIYLRK 284
                        330       340       350
                 ....*....|....*....|....*....|..
gi 578831207 318 DRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:PRK04301 285 SKGNKRIARLVDSPHLPEGEAVFRITEEGIRD 316
XRCC3 cd19491
XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells ...
107-338 3.59e-45

XRCC3 recombinase; XRCC3 (X-ray repair complementing defective repair in Chinese hamster cells 3) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC3, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC2, helps recruit RAD51 to the break site.


Pssm-ID: 410899 [Multi-domain]  Cd Length: 250  Bit Score: 155.53  E-value: 3.59e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLatACIQHLQLIAEK 186
Cdd:cd19491    1 LDELLGGGIPVGGITEIAGESGAGKTQLCLQLALTVQLPRELGGLGGGAVYICTESSFPSKRLQQL--ASSLPKRYHLEK 78
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 187 HKgeehrkaledftldNILSHIYYFRCRDYTELLAQV-YLLPDFLsEHSKVRLVIVDGIAFPFRHDLD----DLSLRTRL 261
Cdd:cd19491   79 AK--------------NFLDNIFVEHVADLETLEHCLnYQLPALL-ERGPIRLVVIDSIAALFRSEFDtsrsDLVERAKY 143
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 262 LNGLAQQMISLANNHRLAVILTNQMTTKIDRN-----------------------QALLVPALGESWGHAATIRLIFhwd 318
Cdd:cd19491  144 LRRLADHLKRLADKYNLAVVVVNQVTDRFDSSsdasglgvldylsqfssfsggvsGNRKVPALGLTWANLVNTRLML--- 220
                        250       260
                 ....*....|....*....|
gi 578831207 319 rkqSRLATLYKSPSQKECTV 338
Cdd:cd19491  221 ---SRTPKRITDSSAASISV 237
Rad51 pfam08423
Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ...
86-349 3.66e-44

Rad51; Rad51 is a DNA repair and recombination protein and is a homolog of the bacterial ATPase RecA protein.


Pssm-ID: 400636 [Multi-domain]  Cd Length: 255  Bit Score: 153.21  E-value: 3.66e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   86 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFM 165
Cdd:pfam08423   5 TATELHQRRSELIQITTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  166 VDRVVDlataciqhlqlIAEKHK--GEEhrkaledfTLDNILShiyyfrCRDYT-----ELLAQvylLPDFLSEhSKVRL 238
Cdd:pfam08423  85 PERLVA-----------IAERYGldPED--------VLDNIAY------ARAYNsehqmQLLQQ---AAAMMSE-SRFAL 135
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  239 VIVDGIAFPFRHD---LDDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAAT 310
Cdd:pfam08423 136 LIVDSATALYRTDfsgRGELAERQQHLGKFLRTLQRLADEFGVAVVITNQVVAQVDGQAAMFSgdpkkPIGGHIMAHAST 215
                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 578831207  311 IRLIFHWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:pfam08423 216 TRLSLRKGRGEQRVCKIYDSPCLPESEAVFAIGSGGIID 254
DMC1 cd19514
homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in ...
100-349 3.74e-40

homologous-pairing protein DMC1; DMC1 has a central role in homologous recombination in meiosis. It assembles at the sites of programmed DNA double-strand breaks and carries out a search for allelic DNA sequences located on homologous chromatids. It forms octameric rings.


Pssm-ID: 410922 [Multi-domain]  Cd Length: 236  Bit Score: 142.11  E-value: 3.74e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqh 179
Cdd:cd19514    1 ISTGSTELDKLLGGGIESMSITEVFGEFRTGKTQLSHTLCVTAQLPGSMGGGGGKVAYIDTEGTFRPDRIRP-------- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 lqlIAEKHkGEEHRKAledftLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEHSKVRLVIVDGIAFPFRHDLD- 253
Cdd:cd19514   73 ---IAERF-GVDHDAV-----LDNIL----YARA--YTsehqmELLDYV---AAKFHEEAVFRLLIIDSIMALFRVDFSg 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 254 --DLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTkiDRNQALLV------PALGESWGHAATIRLIFHWDRKQSRLA 325
Cdd:cd19514  135 rgELAERQQKLAQMLSRLQKISEEYNVAVFITNQVTA--DPGAAMTFqadpkkPIGGHILAHASTTRISLRKGRGEERIA 212
                        250       260
                 ....*....|....*....|....
gi 578831207 326 TLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:cd19514  213 KIYDSPDLPENEATFAITAGGIAD 236
archRadA cd19515
archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a ...
100-349 4.63e-39

archaeal recombinase Rad51/RadA; This group includes the archaeal protein RadA which is a homolog of Rad51. RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR)


Pssm-ID: 410923 [Multi-domain]  Cd Length: 233  Bit Score: 139.04  E-value: 4.63e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqh 179
Cdd:cd19515    1 ISTGSKELDKLLGGGIETQAITEVFGEFGSGKTQLCHQLAVNVQLPPEEGGLNGKAVYIDTENTFRPERIMQMA------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 lqliaeKHKGEEhrkaledftLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDL---DDLS 256
Cdd:cd19515   75 ------KALGLD---------PDEVLDNIYVARAYNSNHQMLLVEKAEDLIKEGNNIKLLIVDSLTSHFRAEYvgrGTLA 139
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 257 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKE 335
Cdd:cd19515  140 ERQQKLNKHLHDLHRLADLYNIAVLVTNQVMAKPDAFFGDpTQAIGGHILGHAATFRVYLRKGKGGKRIARLVDSPHLPE 219
                        250
                 ....*....|....
gi 578831207 336 CTVLFQIKPQGFRD 349
Cdd:cd19515  220 GEAVFRITEKGIED 233
Rad51B cd19493
RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair ...
108-332 9.04e-39

RAD51B recombinase; RAD51B recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51B, together with the other RAD51 paralogs, RAD51C, RAD51D, XRCC3, and XRCC2, helps recruit RAD51 to the break site.


Pssm-ID: 410901 [Multi-domain]  Cd Length: 222  Bit Score: 137.84  E-value: 9.04e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 108 DDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqhlqliAEKH 187
Cdd:cd19493    1 DTALAGGLPLGAITEITGASGSGKTQFALTLASSAAMPARKGGLDGGVLYIDTESKFSAERLAEIA----------EARF 70
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 188 KGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHD----LDDLSLRTRLLN 263
Cdd:cd19493   71 PEAFSGFMEENERAEEMLKRVAVVRVTTLAQLLERLPNLEEHILSS-GVRLVVIDSIAALVRREfggsDGEVTERHNALA 149
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 578831207 264 GLAQQMISLANNHRLAVILTNQMTTKIDRNQ---ALLVPALGESWGHAATIRLIFHWDRKQS-RLATLYKSPS 332
Cdd:cd19493  150 REASSLKRLAEEFRIAVLVTNQATTHFGDAGdgsSGVTAALGDAWAHAVNTRLRLERCLLQLrRVLEIVKSPL 222
RecA COG0468
RecA/RadA recombinase [Replication, recombination and repair];
86-349 1.98e-38

RecA/RadA recombinase [Replication, recombination and repair];


Pssm-ID: 223544 [Multi-domain]  Cd Length: 279  Bit Score: 138.96  E-value: 1.98e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  86 TALELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGSFM 165
Cdd:COG0468   28 MALGGDERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPG------GKAAFIDTEHALD 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 166 VDRVVDLAtaciqhlqliaekhkgeehrkaledftlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhsKVRLVIVDGIA 245
Cdd:COG0468  102 PERAKQLG----------------------------VDLLDNLLVSQPDTGEQQLEIAEKLARSGAE--KIDLLVVDSVA 151
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 246 FPFRHDL---DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQAL-LVPALGESWGHAATIRL------IF 315
Cdd:COG0468  152 ALVRAEEiedGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDpETTTGGNALKFYASVRLdlrrieSL 231
                        250       260       270
                 ....*....|....*....|....*....|....*
gi 578831207 316 HWDRKQSRLATLYKSPSQKE-CTVLFQIKPQGFRD 349
Cdd:COG0468  232 KEDVGNKRRVKVVKNKVAPPfKEAEFDITYGGGID 266
PTZ00035 PTZ00035
Rad51 protein; Provisional
26-349 3.25e-37

Rad51 protein; Provisional


Pssm-ID: 185407 [Multi-domain]  Cd Length: 337  Bit Score: 137.05  E-value: 3.25e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKpryagtseshkkCTALELLEQEHTQGFIITFCS 105
Cdd:PTZ00035  38 KLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGF------------ISATEYLEARKNIIRITTGST 105
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 106 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 185
Cdd:PTZ00035 106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQ-----------IAE 174
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 186 KHK--GEEhrkaledfTLDNILshiyYFRCrdYT-----ELLAQVyllPDFLSEhSKVRLVIVDGIAFPFRHDLD---DL 255
Cdd:PTZ00035 175 RFGldPED--------VLDNIA----YARA--YNhehqmQLLSQA---AAKMAE-ERFALLIVDSATALFRVDYSgrgEL 236
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 256 SLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALL----VPALGESWGHAATIRLIFHWDRKQSRLATLYKSP 331
Cdd:PTZ00035 237 AERQQHLGKFLRALQKLADEFNVAVVITNQVMADVDGASMFVadpkKPIGGHIIAHASTTRLSLRKGRGEQRICKIYDSP 316
                        330
                 ....*....|....*...
gi 578831207 332 SQKECTVLFQIKPQGFRD 349
Cdd:PTZ00035 317 NLPESEAVFAISEGGIID 334
recomb_DMC1 TIGR02238
meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA ...
26-349 8.96e-36

meiotic recombinase Dmc1; This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.


Pssm-ID: 131292 [Multi-domain]  Cd Length: 313  Bit Score: 132.59  E-value: 8.96e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECltnKPRYAgtseshkkcTALELLEQEHTQGFIITFCS 105
Cdd:TIGR02238  16 KLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKII---NPGFI---------TAFEISQKRKKVLKITTGSQ 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  106 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 185
Cdd:TIGR02238  84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-----------IAE 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  186 KHkGEEHrkaleDFTLDNILshiyYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLSLRTRLL 262
Cdd:TIGR02238 153 RF-GVDP-----DAVLDNIL----YARAYTSEHQMELLDYLAAKFSE-EPFRLLIVDSIMALFRVDFSgrgELSERQQKL 221
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  263 NGLAQQMISLANNHRLAVILTNQMTTkiDRNQALLV------PALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKEC 336
Cdd:TIGR02238 222 AQMLSRLNKISEEFNVAVFVTNQVQA--DPGATMTFiadpkkPIGGHVLAHASTTRILLRKGRGEERVAKLYDSPDMPEA 299
                         330
                  ....*....|...
gi 578831207  337 TVLFQIKPQGFRD 349
Cdd:TIGR02238 300 EASFQITEGGIAD 312
Rad51_DMC1_archRadA cd01123
recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic ...
100-346 1.95e-34

recombinase Rad51, DMC1, and archaeal RadA; This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal protein RadA. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .


Pssm-ID: 410868 [Multi-domain]  Cd Length: 234  Bit Score: 126.88  E-value: 1.95e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLAtaciqh 179
Cdd:cd01123    1 ITTGSKELDKLLGGGIETGSITEMFGEFRTGKTQLCHTLAVTCQLPIDRGGGEGKAIYIDTEGTFRPERLRAIA------ 74
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 lqliaeKHKGEEHrkaledftlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhSKVRLVIVDGIAFPFRHDLD---DLS 256
Cdd:cd01123   75 ------QRFGLDP---------DDVLDNVAYARAFNSDHQTQLLDQAAAMMVE-SRFKLLIVDSATALYRTDYSgrgELS 138
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 257 LRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV----PALGESWGHAATIRLIFHWDRKQSRLATLYKSPS 332
Cdd:cd01123  139 ARQMHLAKFLRMLQRLADEFGVAVVVTNQVVAQVDGAMMFAAdpkkPIGGNILAHASTTRLYLRKGRGETRICKIYDSPC 218
                        250
                 ....*....|....
gi 578831207 333 QKECTVLFQIKPQG 346
Cdd:cd01123  219 LPEAEAVFAITADG 232
PLN03187 PLN03187
meiotic recombination protein DMC1 homolog; Provisional
8-349 7.42e-34

meiotic recombination protein DMC1 homolog; Provisional


Pssm-ID: 215620 [Multi-domain]  Cd Length: 344  Bit Score: 128.36  E-value: 7.42e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   8 FEMQRDLVSFPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRecLTNKpryagtseshKKCTA 87
Cdd:PLN03187  28 FESIDKLISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEK--LLNQ----------GFITG 95
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  88 LELLEQEHTQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVD 167
Cdd:PLN03187  96 SDALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPD 175
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 168 RVVDLAtaciqhlqliaekhkgeehrkalEDFTLDN--ILSHIYYFRCRDYTELLAQVYLLPDFLSEHSkVRLVIVDGIA 245
Cdd:PLN03187 176 RIVPIA-----------------------ERFGMDAdaVLDNIIYARAYTYEHQYNLLLGLAAKMAEEP-FRLLIVDSVI 231
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 246 FPFRHDL---DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQ-------MTTKIDRNQallvPALGESWGHAATIRLIF 315
Cdd:PLN03187 232 ALFRVDFtgrGELAERQQKLAQMLSRLTKIAEEFNVAVYMTNQviadpggGMFISDPKK----PAGGHVLAHAATIRLML 307
                        330       340       350
                 ....*....|....*....|....*....|....
gi 578831207 316 HWDRKQSRLATLYKSPSQKECTVLFQIKPQGFRD 349
Cdd:PLN03187 308 RKGKGEQRVCKVFDAPNLPEAEAEFQITSGGIMD 341
PLN03186 PLN03186
DNA repair protein RAD51 homolog; Provisional
26-350 3.10e-33

DNA repair protein RAD51 homolog; Provisional


Pssm-ID: 178728 [Multi-domain]  Cd Length: 342  Bit Score: 126.39  E-value: 3.10e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQiirrecLTNKPRYAGTseshkkCTALELLEQEHTQGFIITFCS 105
Cdd:PLN03186  43 KLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILE------AASKLVPLGF------TTASQLHAQRQEIIQITTGSR 110
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 106 ALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhlqlIAE 185
Cdd:PLN03186 111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-----------IAE 179
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 186 KhkgeehrkaledFTLD--NILSHIYYFRCRDyTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD---DLSLRTR 260
Cdd:PLN03186 180 R------------FGLNgaDVLENVAYARAYN-TDHQSELLLEAASMMAETRFALMIVDSATALYRTEFSgrgELSARQM 246
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 261 LLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQ----ALLVPALGESWGHAATIRLIFHWDRKQSRLATLYKSPSQKEC 336
Cdd:PLN03186 247 HLGKFLRSLQRLADEFGVAVVITNQVVAQVDGSAffagPQLKPIGGNIMAHASTTRLALRKGRGENRICKVISSPCLPEA 326
                        330
                 ....*....|....
gi 578831207 337 TVLFQIKPQGFRDT 350
Cdd:PLN03186 327 EARFSISSEGVTDV 340
Rad51 cd19513
RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous ...
100-349 3.74e-30

RAD51D recombinase; RAD51 recombinase plays an essential role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51 is recruited to the break site with the help of its paralogs, RAD51D, RAD51B, RAD51C, XRCC3, and XRCC2, where it forms long helical polymers which wrap around the ssDNA tail at the break which leads to pairing and strand invasion.


Pssm-ID: 410921 [Multi-domain]  Cd Length: 235  Bit Score: 115.49  E-value: 3.74e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRvvdlataciqh 179
Cdd:cd19513    1 ITTGSKELDKLLGGGIETGSITELFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER----------- 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 LQLIAEKHK--GEEhrkaledfTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---D 254
Cdd:cd19513   70 LLAIAERYGlnGED--------VLDNV-AYARAYNTDHQMQLLIQASAM---MAE-SRYALLIVDSATALYRTDYSgrgE 136
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLVPAL----GESWGHAATIRLIFHWDRKQSRLATLYKS 330
Cdd:cd19513  137 LSARQMHLAKFLRMLQRLADEFGVAVVITNQVVAQVDGAAMFAGDPKkpigGNIMAHASTTRLYLRKGRGETRICKIYDS 216
                        250
                 ....*....|....*....
gi 578831207 331 PSQKECTVLFQIKPQGFRD 349
Cdd:cd19513  217 PCLPEAEAVFAITEDGIGD 235
recomb_RAD51 TIGR02239
DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein ...
26-349 6.70e-30

DNA repair protein RAD51; This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).


Pssm-ID: 274048 [Multi-domain]  Cd Length: 316  Bit Score: 116.75  E-value: 6.70e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   26 KLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLqiirrecltnkpryagtSESHKK-----CTALELLEQEHTQGFI 100
Cdd:TIGR02239  16 KLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKIL-----------------AEAAKLvpmgfTTATEFHQRRQEVIQL 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  101 ITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDlataciqhl 180
Cdd:TIGR02239  79 TTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLA--------- 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  181 qlIAEKHK--GEEhrkaledfTLDNIlSHIYYFRCRDYTELLAQVYLLpdfLSEhSKVRLVIVDGIAFPFRHDLD---DL 255
Cdd:TIGR02239 150 --IAERYGlnPED--------VLDNV-AYARAYNTDHQLQLLQQAAAM---MSE-SRFALLIVDSATALYRTDFSgrgEL 214
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  256 SLRTRLLNGLAQQMISLANNHRLAVILTNQMTTKIDRNQALLV-----PALGESWGHAATIRLIFHWDRKQSRLATLYKS 330
Cdd:TIGR02239 215 SARQMHLARFLRSLQRLADEFGVAVVITNQVVAQVDGAGSMFAgdpkkPIGGNIMAHASTTRLSLRKGRGEQRICKIYDS 294
                         330
                  ....*....|....*....
gi 578831207  331 PSQKECTVLFQIKPQGFRD 349
Cdd:TIGR02239 295 PCLPESEAMFAIYEDGIGD 313
radB PRK09361
DNA repair and recombination protein RadB; Provisional
100-349 1.66e-29

DNA repair and recombination protein RadB; Provisional


Pssm-ID: 236482 [Multi-domain]  Cd Length: 225  Bit Score: 113.42  E-value: 1.66e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIPEcfggvaGEAVFIDTEGsFMVDRVVDLATaciqh 179
Cdd:PRK09361   5 LPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG------KKVIYIDTEG-LSPERFKQIAG----- 72
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 lqliaekhkgeehrkalEDFtlDNILSHIYYFRCRDYTELLAQVYLLPDFLSEhsKVRLVIVDGIAFPFRHDLDDLSLRT 259
Cdd:PRK09361  73 -----------------EDF--EELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLDSATSLYRLELEDEEDNS 131
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 260 RLLNGLAQQM---ISLANNHRLAVILTNQMTTKIDRNQallVPALGEswghaatiRLIFHW---------DRKQSRLATL 327
Cdd:PRK09361 132 KLNRELGRQLthlLKLARKHDLAVVITNQVYSDIDSDG---LRPLGG--------HTLEHWsktilrlekFRNGKRRATL 200
                        250       260
                 ....*....|....*....|...
gi 578831207 328 YKSPSQKEC-TVLFQIKPQGFRD 349
Cdd:PRK09361 201 EKHRSRPEGeSAEFRITDRGIEI 223
archRadB cd01394
archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional ...
100-348 1.52e-26

archaeal RadB; The archaeal protein RadB shares similarity RadA, the archaeal functional homologue to the bacterial RecA. The precise function of RadB is unclear.


Pssm-ID: 410882 [Multi-domain]  Cd Length: 216  Bit Score: 105.09  E-value: 1.52e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 100 IITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVqipecfGGVAGEAVFIDTEGsFMVDRVVDLAtaciqh 179
Cdd:cd01394    1 LSTGSKSLDSLLGGGVERGTITQIYGPPGSGKTNICLQLAVEA------AKQGKKVVYIDTEG-LSPERFQQIA------ 67
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 180 lqliaekhkGEEHRKaledftldnILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDLDDLSlrt 259
Cdd:cd01394   68 ---------GERFES---------IASNIIVFEPYSFDEQGVAIQEAEKLLKSD-KVDLVVVDSATALYRLELGDDS--- 125
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 260 RLLNGLAQQMI---SLANNHRLAVILTNQMTTKIDRNQALLVPalGESWGHA--ATIRLifhwDRKQ--SRLATLYKSPS 332
Cdd:cd01394  126 EANRELSRQMSkllSIARKYDIPVVITNQVYSDIDDDRLKPVG--GTLLEHWskAIIRL----EKSPpgLRRATLEKHRS 199
                        250
                 ....*....|....*..
gi 578831207 333 QKE-CTVLFQIKPQGFR 348
Cdd:cd01394  200 RPEgQSAGFRITDRGIR 216
Rad51D cd19489
RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair ...
112-330 1.31e-25

RAD51D recombinase; RAD51D recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. RAD51D, together with the other RAD51 paralogs, RAD51B, RAD51C, XRCC3, and XRCC2, helps recruit RAD51 to the break site.


Pssm-ID: 410897 [Multi-domain]  Cd Length: 209  Bit Score: 102.33  E-value: 1.31e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 112 GGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQipeCFGGVAgeAVFIDTEGSFMVDRVVDLATACIQHLQLIAEkhkgee 191
Cdd:cd19489    1 GGGLRTGEITELVGESSSGKTQLCLTAAANVA---SRSGQN--VLYIDTKSSFSARRLAQILKSRAQDAEEIDK------ 69
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 192 hrkaledftldnILSHIYYFRCRDYTELLAQVYLLPDFLS-----EHSKVRLVIVDGIAFPFRHDLDDLSLR--TRLLNG 264
Cdd:cd19489   70 ------------ALQRIRVVRVFDPYELLDLLEELRNTLSqqqenLYSRLKLVIIDSLSALISPLLGGSKHSegHALLAS 137
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 578831207 265 LAQQMISLANNHRLAVILTNQMTTKID-RNQALLVPALGESWGHAATIRLIF-----HWDRKQSRLATLYKS 330
Cdd:cd19489  138 LARLLKKLAAEYQIAVLVTNLTVRGGDgGQQGSTKPALGEYWESVPSTRLLLsrdenDPEESGVCTATLLKS 209
XRCC2 cd19490
XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells ...
122-316 7.83e-25

XRCC2 recombinase; XRCC2 (X-ray repair complementing defective repair in Chinese hamster cells 2) recombinase, a RAD51 paralog, plays an important role in DNA repair by homologous recombination (HR). HR is an important error-free repair mechanism for chromosomal double-strand break (DSB) which otherwise leads to cell cycle arrest and death. XRCC2, together with the other RAD51 paralogs, RAD51B, RAD51C, RAD51D, and XRCC3, helps recruit RAD51 to the break site.


Pssm-ID: 410898 [Multi-domain]  Cd Length: 226  Bit Score: 100.89  E-value: 7.83e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 122 EICGAPGVGKTQLCMQLAVDVQIPECFGGVA-----GEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRkal 196
Cdd:cd19490    5 EITGPSGSGKTELLYHLAARCILPSSWGGVPlggleAAVVFIDTDGRFDILRLRSILEARIRAAIQAANSSDDEEDV--- 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207 197 eDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFL---SEHSKVRLVIVDGIAFPFRHD-------LDDLSLRTRLLNGLA 266
Cdd:cd19490   82 -EEIARECLQRLHIFRCHSSLQLLATLLSLENYLlslSANPELGLLLIDSISAFYWQDrfsaelaRAAPLLQEAALRAIL 160
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 578831207 267 QQMISLANNHRLAVILTNQM--------TTKIDRNQALLVP-------ALGESWGHAATIRLIFH 316
Cdd:cd19490  161 RELRRLRRRFQLVVIATKQAlfpgksasTDNPAANNAVSKAsapshreYLPRPWQRLVTHRLVLS 225
recomb_radB TIGR02237
DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB ...
107-346 8.11e-18

DNA repair and recombination protein RadB; This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).


Pssm-ID: 274047 [Multi-domain]  Cd Length: 209  Bit Score: 80.92  E-value: 8.11e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQipecfgGVAGEAVFIDTEGsFMVDRVVDLATAciqhlqliaek 186
Cdd:TIGR02237   1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAED----------- 62
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  187 hkgeehrkaledfTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHsKVRLVIVDGIAFPFRHDL-DDLSLRTRLLNGL 265
Cdd:TIGR02237  63 -------------RPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELsDDRISRNRELARQ 128
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  266 AQQMISLANNHRLAVILTNQMTTKIDRNQALlvPALGESWGHAAtiRLIFHWDR-KQSRLATLYKSPSQKEC-TVLFQIK 343
Cdd:TIGR02237 129 LTLLLSLARKKNLAVVITNQVYTDVNNGTLR--PLGGHLLEHWS--KVILRLEKfRGRRLATLEKHRSRPEGeSVYFRIT 204

                  ...
gi 578831207  344 PQG 346
Cdd:TIGR02237 205 DDG 207
AAA_25 pfam13481
AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.
98-283 7.18e-08

AAA domain; This AAA domain is found in a wide variety of presumed DNA repair proteins.


Pssm-ID: 433245 [Multi-domain]  Cd Length: 193  Bit Score: 51.99  E-value: 7.18e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207   98 GFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDV----QIPECFGGVAGEAVFIDTEGSFmvdrvvdla 173
Cdd:pfam13481  13 DGLAAPPPPRRWLIKGLLPAGGLGLLAGAPGTGKTTLALDLALAVatgkPWLGPRVPEQGKVLYVSAEDPA--------- 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  174 taciQHLQLIAEKHKGEEHRKALEDFTLDNILSHIYYFRCRDYTELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLD 253
Cdd:pfam13481  84 ----DELRRRLRAAGADLDLPARLLFLSLGVESLPLFFLDRGGPLLDADVDALERALEEVEGPDLVVIDPLARALGGDEN 159
                         170       180       190
                  ....*....|....*....|....*....|
gi 578831207  254 DLSLRTRLLNGLAQqmisLANNHRLAVILT 283
Cdd:pfam13481 160 SNSDVGRLVKALDR----LARRTGATVLLV 185
ATPase pfam06745
KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and ...
107-140 6.69e-05

KaiC; This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.


Pssm-ID: 429095 [Multi-domain]  Cd Length: 231  Bit Score: 43.77  E-value: 6.69e-05
                          10        20        30
                  ....*....|....*....|....*....|....
gi 578831207  107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 140
Cdd:pfam06745   8 LDEILKGGFPEGRVVLITGGPGTGKTIFGLQFLY 41
PRK09302 PRK09302
circadian clock protein KaiC; Reviewed
107-137 7.55e-05

circadian clock protein KaiC; Reviewed


Pssm-ID: 236461 [Multi-domain]  Cd Length: 509  Bit Score: 44.49  E-value: 7.55e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 578831207 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQ 137
Cdd:PRK09302  20 FDDITHGGLPKGRPTLVSGTAGTGKTLFALQ 50
Sms COG1066
Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, ...
70-139 9.28e-05

Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 223993 [Multi-domain]  Cd Length: 456  Bit Score: 44.13  E-value: 9.28e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 578831207  70 TNKPRYAGTSESHKKCTALELLEQEHTQGFIITFCSaLDDILGGGVPLMKTTEICGAPGVGKTQLCMQLA 139
Cdd:COG1066   46 PNKRRSGKAGSEPSKVLKLSDIELEEEPRISTGIEE-LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA 114
RAD55 COG0467
RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];
107-140 1.65e-04

RecA-superfamily ATPase, KaiC/GvpD/RAD55 family [Signal transduction mechanisms];


Pssm-ID: 223543 [Multi-domain]  Cd Length: 260  Bit Score: 42.84  E-value: 1.65e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 578831207 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 140
Cdd:COG0467   12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLY 45
KaiC-like cd01124
Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. ...
107-140 3.08e-04

Circadian Clock Protein KaiC; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.


Pssm-ID: 410869 [Multi-domain]  Cd Length: 222  Bit Score: 41.48  E-value: 3.08e-04
                         10        20        30
                 ....*....|....*....|....*....|....
gi 578831207 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAV 140
Cdd:cd01124    8 LDELLGGGIPKGSVTLLTGGPGTGKTLFGLQFLY 41
KaiC-N cd19485
N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most ...
107-137 4.10e-04

N-terminal domain of Circadian Clock Protein Kaic; KaiC is a circadian clock protein, most studied in cyanobacteria. KaiC, an autokinase, autophosphatase, and ATPase, is part of the core oscillator, composed of three proteins: KaiA, KaiB, and KaiC. The circadian oscillation is regulated via KaiC phosphorylation.


Pssm-ID: 410893 [Multi-domain]  Cd Length: 226  Bit Score: 41.20  E-value: 4.10e-04
                         10        20        30
                 ....*....|....*....|....*....|.
gi 578831207 107 LDDILGGGVPLMKTTEICGAPGVGKTQLCMQ 137
Cdd:cd19485    8 FDDITHGGLPKGRPTLICGTAGTGKTLFAAQ 38
RecA cd00983
recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA ...
99-164 6.02e-04

recombinase A; RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.


Pssm-ID: 410863 [Multi-domain]  Cd Length: 235  Bit Score: 41.00  E-value: 6.02e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 578831207  99 FIITFCSALDDILG-GGVPLMKTTEICGAPGVGKTQLCMQLAVDVQIpecFGGVageAVFIDTEGSF 164
Cdd:cd00983    4 VIPTGSLSLDIALGiGGLPRGRIIEIYGPESSGKTTLALHAIAEAQK---LGGT---AAFIDAEHAL 64
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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