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Conserved domains on  [gi|655857827|ref|XP_008265991|]
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immunoglobulin J chain [Oryctolagus cuniculus]

Protein Classification

Ig_J_chain domain-containing protein( domain architecture ID 10633428)

Ig_J_chain domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
Ig_J_chain pfam15097
Immunoglobulin J chain;
23-158 3.84e-84

Immunoglobulin J chain;


:

Pssm-ID: 434454  Cd Length: 134  Bit Score: 243.11  E-value: 3.84e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655857827   23 EDESTVLVDNKCQCVRITSRIIRDPDNPSEDIVERNIRIIVPLNTRENISDPTSPLRTEFKYNLANLCKKCDPTEIELDN 102
Cdd:pfam15097   1 EDEETVLVDNKCKCVRVTSRFVPSKEDPEEEVVERNIRIIVPLNNRENISDPTSPLRTKFVYHLSDLCKKCDPTEVELGN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 655857827  103 QVFTASQSNICpdDDYSETCYTYDRNKCYTTLVPITHRGVTRMVKATLTPDSCYPD 158
Cdd:pfam15097  81 QVVTATQSNIC--DEDSETCYTYDRNKCYTSTVPFTYGGETKMVETALTPDSCYPD 134
 
Name Accession Description Interval E-value
Ig_J_chain pfam15097
Immunoglobulin J chain;
23-158 3.84e-84

Immunoglobulin J chain;


Pssm-ID: 434454  Cd Length: 134  Bit Score: 243.11  E-value: 3.84e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655857827   23 EDESTVLVDNKCQCVRITSRIIRDPDNPSEDIVERNIRIIVPLNTRENISDPTSPLRTEFKYNLANLCKKCDPTEIELDN 102
Cdd:pfam15097   1 EDEETVLVDNKCKCVRVTSRFVPSKEDPEEEVVERNIRIIVPLNNRENISDPTSPLRTKFVYHLSDLCKKCDPTEVELGN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 655857827  103 QVFTASQSNICpdDDYSETCYTYDRNKCYTTLVPITHRGVTRMVKATLTPDSCYPD 158
Cdd:pfam15097  81 QVVTATQSNIC--DEDSETCYTYDRNKCYTSTVPFTYGGETKMVETALTPDSCYPD 134
 
Name Accession Description Interval E-value
Ig_J_chain pfam15097
Immunoglobulin J chain;
23-158 3.84e-84

Immunoglobulin J chain;


Pssm-ID: 434454  Cd Length: 134  Bit Score: 243.11  E-value: 3.84e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655857827   23 EDESTVLVDNKCQCVRITSRIIRDPDNPSEDIVERNIRIIVPLNTRENISDPTSPLRTEFKYNLANLCKKCDPTEIELDN 102
Cdd:pfam15097   1 EDEETVLVDNKCKCVRVTSRFVPSKEDPEEEVVERNIRIIVPLNNRENISDPTSPLRTKFVYHLSDLCKKCDPTEVELGN 80
                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 655857827  103 QVFTASQSNICpdDDYSETCYTYDRNKCYTTLVPITHRGVTRMVKATLTPDSCYPD 158
Cdd:pfam15097  81 QVVTATQSNIC--DEDSETCYTYDRNKCYTSTVPFTYGGETKMVETALTPDSCYPD 134
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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