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Conserved domains on  [gi|2461737179|ref|XP_009006411|]
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ciliary neurotrophic factor [Callithrix jacchus]

Protein Classification

CNTF domain-containing protein( domain architecture ID 10471448)

CNTF domain-containing protein

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CNTF pfam01110
Ciliary neurotrophic factor;
1-187 2.09e-123

Ciliary neurotrophic factor;


:

Pssm-ID: 395881  Cd Length: 187  Bit Score: 346.06  E-value: 2.09e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179   1 MAFAEHSPLAPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLDKNINLNSMDGVPMASTDRWSELTEAERLQENLQAY 80
Cdd:pfam01110   1 MAFAEHSPLTPHRRDLCSRSIWLARKIRSDLTALLDSYVEHQGLNANISLDAMDGVPTASVERWSELTEAERLQENLAAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179  81 RAFHVLLARLLEDQQVHFTPTEGDFHQAIHSLLLQVAAFAYQIEELMVLLEYKIPPSEADGMPVGvGDGGLFEKKLWGLK 160
Cdd:pfam01110  81 RAFHVLLARLLEDQREHFTPTEADFHQAIHAVLLQVSAFAYQLEELMALLEHGIPPEEGDGPPLP-GRLGLFEKKLWGLK 159
                         170       180
                  ....*....|....*....|....*...
gi 2461737179 161 VLQELSQWTVRSIHDLRVISSH-QTGIP 187
Cdd:pfam01110 160 VLQELSQWTVRSVRDLRQISSPgQAGGP 187
 
Name Accession Description Interval E-value
CNTF pfam01110
Ciliary neurotrophic factor;
1-187 2.09e-123

Ciliary neurotrophic factor;


Pssm-ID: 395881  Cd Length: 187  Bit Score: 346.06  E-value: 2.09e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179   1 MAFAEHSPLAPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLDKNINLNSMDGVPMASTDRWSELTEAERLQENLQAY 80
Cdd:pfam01110   1 MAFAEHSPLTPHRRDLCSRSIWLARKIRSDLTALLDSYVEHQGLNANISLDAMDGVPTASVERWSELTEAERLQENLAAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179  81 RAFHVLLARLLEDQQVHFTPTEGDFHQAIHSLLLQVAAFAYQIEELMVLLEYKIPPSEADGMPVGvGDGGLFEKKLWGLK 160
Cdd:pfam01110  81 RAFHVLLARLLEDQREHFTPTEADFHQAIHAVLLQVSAFAYQLEELMALLEHGIPPEEGDGPPLP-GRLGLFEKKLWGLK 159
                         170       180
                  ....*....|....*....|....*...
gi 2461737179 161 VLQELSQWTVRSIHDLRVISSH-QTGIP 187
Cdd:pfam01110 160 VLQELSQWTVRSVRDLRQISSPgQAGGP 187
 
Name Accession Description Interval E-value
CNTF pfam01110
Ciliary neurotrophic factor;
1-187 2.09e-123

Ciliary neurotrophic factor;


Pssm-ID: 395881  Cd Length: 187  Bit Score: 346.06  E-value: 2.09e-123
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179   1 MAFAEHSPLAPHRRDLCSRSIWLARKIRSDLTALTESYVKHQGLDKNINLNSMDGVPMASTDRWSELTEAERLQENLQAY 80
Cdd:pfam01110   1 MAFAEHSPLTPHRRDLCSRSIWLARKIRSDLTALLDSYVEHQGLNANISLDAMDGVPTASVERWSELTEAERLQENLAAY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2461737179  81 RAFHVLLARLLEDQQVHFTPTEGDFHQAIHSLLLQVAAFAYQIEELMVLLEYKIPPSEADGMPVGvGDGGLFEKKLWGLK 160
Cdd:pfam01110  81 RAFHVLLARLLEDQREHFTPTEADFHQAIHAVLLQVSAFAYQLEELMALLEHGIPPEEGDGPPLP-GRLGLFEKKLWGLK 159
                         170       180
                  ....*....|....*....|....*...
gi 2461737179 161 VLQELSQWTVRSIHDLRVISSH-QTGIP 187
Cdd:pfam01110 160 VLQELSQWTVRSVRDLRQISSPgQAGGP 187
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.20
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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