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Conserved domains on  [gi|755535050|ref|XP_011241859|]
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overexpressed in colon carcinoma 1 protein homolog isoform X1 [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OCC1 super family cl21315
OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has ...
 92-134 7.50e-17

OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has been shown to be overexpressed in several colon carcinomas.


The actual alignment was detected with superfamily member pfam15506:

Pssm-ID: 292144  Cd Length: 61  Bit Score: 69.65  E-value: 7.50e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 755535050   92 GRGPR------TEDSITEDDKRRNYGGVYVGLPSEAVNMASSQTKTVQK 134
Cdd:pfam15506  13 GPGPAgsakdvQEESVMDDDKRRNYGGVYVGLPSDATNMVSGQTKSTHK 61
 
Name Accession Description Interval E-value
OCC1 pfam15506
OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has ...
 92-134 7.50e-17

OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has been shown to be overexpressed in several colon carcinomas.


Pssm-ID: 292144  Cd Length: 61  Bit Score: 69.65  E-value: 7.50e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 755535050   92 GRGPR------TEDSITEDDKRRNYGGVYVGLPSEAVNMASSQTKTVQK 134
Cdd:pfam15506  13 GPGPAgsakdvQEESVMDDDKRRNYGGVYVGLPSDATNMVSGQTKSTHK 61
 
Name Accession Description Interval E-value
OCC1 pfam15506
OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has ...
 92-134 7.50e-17

OCC1 family; The human member of this family, overexpressed in colon carcinoma 1 protein has been shown to be overexpressed in several colon carcinomas.


Pssm-ID: 292144  Cd Length: 61  Bit Score: 69.65  E-value: 7.50e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 755535050   92 GRGPR------TEDSITEDDKRRNYGGVYVGLPSEAVNMASSQTKTVQK 134
Cdd:pfam15506  13 GPGPAgsakdvQEESVMDDDKRRNYGGVYVGLPSDATNMVSGQTKSTHK 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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