|
Name |
Accession |
Description |
Interval |
E-value |
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
124-438 |
2.43e-11 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 66.88 E-value: 2.43e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 124 KYAQVKSILERSKEELSRtvkcrnAALKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQ 203
Cdd:COG1196 214 RYRELKEELKELEAELLL------LKLRELEAELEELEAELEELEAELEELEAELAELEAE-------LEELRLELEELE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 204 GALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNS---EIESLQKALGVAREDNRKLAMSL 280
Cdd:COG1196 281 LELEEAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEEleeELEELEEELEEAEEELEEAEAEL 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 281 EQALQTNNHLQTKLDHIQEQLESKELERQNLETfkdrmTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKK 360
Cdd:COG1196 361 AEAEEALLEAEAELAEAEEELEELAEELLEALR-----AAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEE 435
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767917649 361 ALDEAnfrsvevSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQY 438
Cdd:COG1196 436 EEEEE-------EEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGF 506
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
205-510 |
1.40e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 64.57 E-value: 1.40e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 205 ALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVdqwqarmlvmeDQHNSEIESLQKALGVAREDNRKLAMSLEQAL 284
Cdd:COG1196 233 KLRELEAELEELEAELEELEAELEELEAELAELEAEL-----------EELRLELEELELELEEAQAEEYELLAELARLE 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 285 QTNNHLQTKLDHIQEQLESKELERQNLETfkdrmteeskvEAELHAERIEALRKQfQTERETTKKVAQREVAELKKALDE 364
Cdd:COG1196 302 QDIARLEERRRELEERLEELEEELAELEE-----------ELEELEEELEELEEE-LEEAEEELEEAEAELAEAEEALLE 369
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 365 ANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYE 444
Cdd:COG1196 370 AEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAE 449
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 767917649 445 QSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKK 510
Cdd:COG1196 450 EEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALL 515
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
212-536 |
1.92e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 57.64 E-value: 1.92e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 212 ELGRRdseIAGLKKERDlNQQRVQKLEAEVDQWQARMLVMEDQH-NSEIESLQKALGVAREDNRKLAMSLEQALQTNNHL 290
Cdd:COG1196 197 ELERQ---LEPLERQAE-KAERYRELKEELKELEAELLLLKLRElEAELEELEAELEELEAELEELEAELAELEAELEEL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 291 QTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELhAERIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSV 370
Cdd:COG1196 273 RLELEELELELEEAQAEEYELLAELARLEQDIARLEER-RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEE 351
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 371 EVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQ 450
Cdd:COG1196 352 ELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALA 431
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 451 RFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQIT 530
Cdd:COG1196 432 ELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
....*.
gi 767917649 531 ANLEEA 536
Cdd:COG1196 512 AALLLA 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
70-364 |
3.93e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 56.60 E-value: 3.93e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 70 QQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDtslQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAA 149
Cdd:TIGR02168 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEE---ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQL 752
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 150 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLAS---HSKMQGALEKVQIELGRRDSEIAGLKKE 226
Cdd:TIGR02168 753 SKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALreaLDELRAELTLLNEEAANLRERLESLERR 832
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 227 RDLNQQRVQKLEAEVDQWQARMLVMEDQHNS-----------------EIESLQKALGVAREDNRKLAMSLEQALQTNNH 289
Cdd:TIGR02168 833 IAATERRLEDLEEQIEELSEDIESLAAEIEEleelieeleseleallnERASLEEALALLRSELEELSEELRELESKRSE 912
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 767917649 290 LQTKLDHIQEQLESKELE----RQNLETFKDRMTEESKVEAELHAERIEalrkqfqtERETTKKVAQREVAELKKALDE 364
Cdd:TIGR02168 913 LRRELEELREKLAQLELRleglEVRIDNLQERLSEEYSLTLEEAEALEN--------KIEDDEEEARRRLKRLENKIKE 983
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
128-470 |
1.80e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 54.30 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 128 VKSILERSKEELSRTVKCRNAALKeSQKLKEDLEAVEDREnkkvgnfqrqLAEAKEDNCKvtiMLENVLASHSKMQGALE 207
Cdd:TIGR02169 189 LDLIIDEKRQQLERLRREREKAER-YQALLKEKREYEGYE----------LLKEKEALER---QKEAIERQLASLEEELE 254
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 208 KVQIELGRRDSEIAGLKKERDLNQQRVQKL-EAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQALQT 286
Cdd:TIGR02169 255 KLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELE----AEIASLERSIAEKERELEDAEERLAKLEAE 330
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 287 NNHLQTKLDHIQEQLESKELERQNLETfkdrMTEESKVEAELHAERIEALRKQFQTERETTKKVaQREVAELKKALDEAN 366
Cdd:TIGR02169 331 IDKLLAEIEELEREIEEERKRRDKLTE----EYAELKEELEDLRAELEEVDKEFAETRDELKDY-REKLEKLKREINELK 405
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 367 FRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKlhlsakannaQNIERMKQIEKELKQMELIKDQYQKKNYEQS 446
Cdd:TIGR02169 406 RELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE----------DKALEIKKQEWKLEQLAADLSKYEQELYDLK 475
|
330 340
....*....|....*....|....
gi 767917649 447 LSIQRFVCEMTNLQKEMQMLAKSQ 470
Cdd:TIGR02169 476 EEYDRVEKELSKLQRELAEAEAQA 499
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
232-538 |
2.52e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 53.91 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 232 QRVQKLEAEVDQWQARMLVME-DQHNSEIESLQKALGVARED----NRKLAMSLEQALQTN---NHLQTKLDHIQEQLES 303
Cdd:TIGR02168 213 ERYKELKAELRELELALLVLRlEELREELEELQEELKEAEEEleelTAELQELEEKLEELRlevSELEEEIEELQKELYA 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 304 KELERQNLETFKdRMTEESKVEAELHAERIEALRKQFQTERETtkkvAQREVAELKKALDEANFRSVEVSRTNRELRQKL 383
Cdd:TIGR02168 293 LANEISRLEQQK-QILRERLANLERQLEELEAQLEELESKLDE----LAEELAELEEKLEELKEELESLEAELEELEAEL 367
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 384 AELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMkqiEKELKQMELIKDQYQKKNYEQSLSIQRfvCEMTNLQKEM 463
Cdd:TIGR02168 368 EELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL---EARLERLEDRRERLQQEIEELLKKLEE--AELKELQAEL 442
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 767917649 464 QMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 538
Cdd:TIGR02168 443 EELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
257-538 |
8.63e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 52.37 E-value: 8.63e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 257 SEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLEtfkDRMTEESKVEAELHAERIEAL 336
Cdd:TIGR02168 691 EKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLE---ERIAQLSKELTELEAEIEELE 767
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 337 RKQfqTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQ 416
Cdd:TIGR02168 768 ERL--EEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEE 845
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 417 NIERMKQIEKELkqmelikdqyqkknyeqSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELEN 496
Cdd:TIGR02168 846 QIEELSEDIESL-----------------AAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELES 908
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 767917649 497 RCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 538
Cdd:TIGR02168 909 KRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
150-538 |
1.14e-06 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 52.07 E-value: 1.14e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 150 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKE-DNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERD 228
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKaDEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAA 1362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 229 LNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKAlgvaREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELER 308
Cdd:PTZ00121 1363 EEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKK----AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKK 1438
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 309 QNLETfkdRMTEESKVEAElHAERIEALRKQFQterETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEK 388
Cdd:PTZ00121 1439 KAEEA---KKADEAKKKAE-EAKKAEEAKKKAE---EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 389 ILESNK-------EKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQK 461
Cdd:PTZ00121 1512 ADEAKKaeeakkaDEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767917649 462 EMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 538
Cdd:PTZ00121 1592 ARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK 1668
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
290-538 |
1.18e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 51.86 E-value: 1.18e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 290 LQTKLDHIQEQLESKELERQNLEtfkDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKKALDEANFRS 369
Cdd:COG1196 218 LKEELKELEAELLLLKLRELEAE---LEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELL 294
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 370 VEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSI 449
Cdd:COG1196 295 AELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAEL 374
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 450 QRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQI 529
Cdd:COG1196 375 AEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAEL 454
|
....*....
gi 767917649 530 TANLEEAHR 538
Cdd:COG1196 455 EEEEEALLE 463
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
280-553 |
1.75e-06 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 51.22 E-value: 1.75e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 280 LEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQF-QTERETTKKvaQREVAEL 358
Cdd:TIGR02169 179 LEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKeAIERQLASL--EEELEKL 256
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 359 KKALDEANFRSVEVSRTNRELRQKLAEL-EKILESNKEKIKNQKTQIKlhlSAKANNAQNIERMKQIEKELKQMELIKDQ 437
Cdd:TIGR02169 257 TEEISELEKRLEEIEQLLEELNKKIKDLgEEEQLRVKEKIGELEAEIA---SLERSIAEKERELEDAEERLAKLEAEIDK 333
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 438 YQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDasVRNKQQELHLEAeRKIRQELENRCQELEETVRH---LKKCKEA 514
Cdd:TIGR02169 334 LLAEIEELEREIEEERKRRDKLTEEYAELKEELED--LRAELEEVDKEF-AETRDELKDYREKLEKLKREineLKRELDR 410
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 767917649 515 TENTLKEASVESEQITANL---EEAHRWFKHRFDGLQLELTK 553
Cdd:TIGR02169 411 LQEELQRLSEELADLNAAIagiEAKINELEEEKEDKALEIKK 452
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
205-388 |
1.89e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 51.07 E-value: 1.89e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 205 ALEKVQIELGRRDSEIAGLKKERDlnQQRVQKLEAEVDQWQARMlvmeDQHNSEIESLQKALGVAREDNRklamSLEQAL 284
Cdd:COG4913 263 RYAAARERLAELEYLRAALRLWFA--QRRLELLEAELEELRAEL----ARLEAELERLEARLDALREELD----ELEAQI 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 285 QTN-----NHLQTKLDHIQEQLESKELERQNLEtfkdRMTEESKVEAELHAERIEALRKQFQTERETtkkvAQREVAELK 359
Cdd:COG4913 333 RGNggdrlEQLEREIERLERELEERERRRARLE----ALLAALGLPLPASAEEFAALRAEAAALLEA----LEEELEALE 404
|
170 180
....*....|....*....|....*....
gi 767917649 360 KALDEANFRSVEVSRTNRELRQKLAELEK 388
Cdd:COG4913 405 EALAEAEAALRDLRRELRELEAEIASLER 433
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
206-432 |
5.45e-06 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 49.53 E-value: 5.45e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 206 LEKVQIELGRRDSEIAGLKKERDLNQQR----------------VQKLEAEVDQWQARmLVMEDQHNSEIESLQKALGVA 269
Cdd:COG4913 619 LAELEEELAEAEERLEALEAELDALQERrealqrlaeyswdeidVASAEREIAELEAE-LERLDASSDDLAALEEQLEEL 697
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 270 REDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTE---ESKVEAELHAERIEALRKQFQTERET 346
Cdd:COG4913 698 EAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLEAAEDLARLELRallEERFAAALGDAVERELRENLEERIDA 777
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 347 TKKVAQREVAELKKALDEAN----FRSVEVSRTNRELRQKLAELEKILESN--------KEKIKNQKTQIKLHLSAK-AN 413
Cdd:COG4913 778 LRARLNRAEEELERAMRAFNrewpAETADLDADLESLPEYLALLDRLEEDGlpeyeerfKELLNENSIEFVADLLSKlRR 857
|
250 260
....*....|....*....|
gi 767917649 414 NAQNI-ERMKQIEKELKQME 432
Cdd:COG4913 858 AIREIkERIDPLNDSLKRIP 877
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
218-431 |
2.57e-05 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 46.68 E-value: 2.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 218 SEIAGLKKERDLNQQRVQKLEAEVDQWQARmlvmEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHI 297
Cdd:COG4942 20 DAAAEAEAELEQLQQEIAELEKELAALKKE----EKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 298 QEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQReVAELKKALDEANFRSVEVSRTNR 377
Cdd:COG4942 96 RAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQ-AEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 767917649 378 ELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQM 431
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEAL 228
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
25-535 |
5.50e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 46.50 E-value: 5.50e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 25 LAKNKVDINTLTHNLQTLEEENKHLADQ-----MASLELQQVTSDYHGLA--QQKVEKITESKNKLAYENGKLQIKVKQL 97
Cdd:TIGR00618 333 HVKQQSSIEEQRRLLQTLHSQEIHIRDAhevatSIREISCQQHTLTQHIHtlQQQKTTLTQKLQSLCKELDILQREQATI 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 98 EEQVQSFTDTSLQNDHLRKMNKyLQTKYAQVKSI-------LERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKK 170
Cdd:TIGR00618 413 DTRTSAFRDLQGQLAHAKKQQE-LQQRYAELCAAaitctaqCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAV 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 171 VGNFQRQLAEAKEDNCKVTI-----------------MLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQR 233
Cdd:TIGR00618 492 VLARLLELQEEPCPLCGSCIhpnparqdidnpgpltrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQS 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 234 VQKLeaeVDQWQARMLVMEDQHNsEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLET 313
Cdd:TIGR00618 572 FSIL---TQCDNRSKEDIPNLQN-ITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTA 647
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 314 FKDRMTEESKVEAELHAERIEALRKQFQTEREttkkvaqrevaelkKALDEANFRSVEVSRTNRELRQKLAELEKILESN 393
Cdd:TIGR00618 648 LHALQLTLTQERVREHALSIRVLPKELLASRQ--------------LALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI 713
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 394 KEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELkqMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDA 473
Cdd:TIGR00618 714 EEYDREFNEIENASSSLGSDLAAREDALNQSLKEL--MHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFN 791
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767917649 474 SVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEE 535
Cdd:TIGR00618 792 RLREEDTHLLKTLEAEIGQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLK 853
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
276-490 |
6.33e-05 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 46.16 E-value: 6.33e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 276 LAMSLEQALQTNNHLQTKLDHIQEQLESKElerQNLETFKDR-MTEESKVEAELHAERIEALRKQfQTERETTKKVAQRE 354
Cdd:COG3206 166 LELRREEARKALEFLEEQLPELRKELEEAE---AALEEFRQKnGLVDLSEEAKLLLQQLSELESQ-LAEARAELAEAEAR 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 355 VAELKKALDEANFRSVEVSRTNR---------ELRQKLAELEKILESN-------KEKIKNQKTQIK-----LHLSAKAN 413
Cdd:COG3206 242 LAALRAQLGSGPDALPELLQSPViqqlraqlaELEAELAELSARYTPNhpdvialRAQIAALRAQLQqeaqrILASLEAE 321
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 767917649 414 NAQNIERMKQIEKELKQmelikdqyQKKNYEQSLSIQRfvcEMTNLQKEMQmLAKSQYDaSVRNKQQELHLEAERKI 490
Cdd:COG3206 322 LEALQAREASLQAQLAQ--------LEARLAELPELEA---ELRRLEREVE-VARELYE-SLLQRLEEARLAEALTV 385
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
21-538 |
8.60e-05 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 45.70 E-value: 8.60e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 21 LEKELAKNKvdINTLTHNLQTLEEENKHLADQMASLELQQvtsdyhglaQQKVEKITESKNKLAYENGKLQIKVKQLEEQ 100
Cdd:COG1196 225 LEAELLLLK--LRELEAELEELEAELEELEAELEELEAEL---------AELEAELEELRLELEELELELEEAQAEEYEL 293
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 101 VQSFTDTSLQNDHLRKMNKYLQTKyaqvksiLERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGNFQRQLAE 180
Cdd:COG1196 294 LAELARLEQDIARLEERRRELEER-------LEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEA 366
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 181 AKEDNcKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIE 260
Cdd:COG1196 367 LLEAE-AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALE 445
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 261 SLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQF 340
Cdd:COG1196 446 EAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGA 525
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 341 QTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIER 420
Cdd:COG1196 526 VAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVA 605
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 421 MKQIEKELKQMELI-----KDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELE 495
Cdd:COG1196 606 SDLREADARYYVLGdtllgRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELA 685
|
490 500 510 520
....*....|....*....|....*....|....*....|...
gi 767917649 496 NRCQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHR 538
Cdd:COG1196 686 ERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEE 728
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
15-442 |
1.19e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 45.14 E-value: 1.19e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 15 VQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHglaqQKVEKITESKNKLAYENGKLQIKV 94
Cdd:COG4717 80 LKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQLLPLY----QELEALEAELAELPERLEELEERL 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 95 KQLEEQVQSFTDTSLQNDHLR-KMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVGN 173
Cdd:COG4717 156 EELRELEEELEELEAELAELQeELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEELEQLENE 235
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 174 FQRQLAEAKEDNCKVTIMLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMED 253
Cdd:COG4717 236 LEAAALEERLKEARLLLLIAAALLALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEE 315
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 254 QHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFkdrmteeskveAELHAERI 333
Cdd:COG4717 316 LEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEELEEELQLEELEQEIAALL-----------AEAGVEDE 384
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 334 EALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIklhlsakan 413
Cdd:COG4717 385 EELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEELEEELEELREEL--------- 455
|
410 420
....*....|....*....|....*....
gi 767917649 414 nAQNIERMKQIEKELKQMELIKDQYQKKN 442
Cdd:COG4717 456 -AELEAELEQLEEDGELAELLQELEELKA 483
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
77-531 |
1.48e-04 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 45.11 E-value: 1.48e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 77 TESKNKLAYENGKLQIKVKQL----EEQVQSFTDTSL----QNDHLRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNA 148
Cdd:pfam15921 252 SESQNKIELLLQQHQDRIEQLisehEVEITGLTEKASsarsQANSIQSQLEIIQEQARNQNSMYMRQLSDLESTVSQLRS 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 149 ALKESQKLKED-LEAVEDR---ENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQG--ALEKVQIE-LGRRDS--- 218
Cdd:pfam15921 332 ELREAKRMYEDkIEELEKQlvlANSELTEARTERDQFSQESGNLDDQLQKLLADLHKREKelSLEKEQNKrLWDRDTgns 411
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 219 -EIAGLKKERDLNQQRVQKLEAEVD--------QWQARMLVMEDQHNS--EIESLQKALGVAREDNRKLAMSLEQALQTN 287
Cdd:pfam15921 412 iTIDHLRRELDDRNMEVQRLEALLKamksecqgQMERQMAAIQGKNESleKVSSLTAQLESTKEMLRKVVEELTAKKMTL 491
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 288 NHLQTKLDHIQEQLESKE--LERQNLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTK-KVAQRE--VAELKKAL 362
Cdd:pfam15921 492 ESSERTVSDLTASLQEKEraIEATNAEITKLRSRVDLKLQELQHLKNEGDHLRNVQTECEALKlQMAEKDkvIEILRQQI 571
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 363 DEANFRSVEVSRTNRELRQKLAELEK-----ILESNKEKIKNQKTQIKL-HLSAKANNAQnIERMKQIEKELKQMELIKD 436
Cdd:pfam15921 572 ENMTQLVGQHGRTAGAMQVEKAQLEKeindrRLELQEFKILKDKKDAKIrELEARVSDLE-LEKVKLVNAGSERLRAVKD 650
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 437 QYQKKNYEQSlSIQRFVCEMTNLQKEMQMLAKSqydasVRNKQQELHLEAErKIRQELENRCQELEETVRHLKKCKEATE 516
Cdd:pfam15921 651 IKQERDQLLN-EVKTSRNELNSLSEDYEVLKRN-----FRNKSEEMETTTN-KLKMQLKSAQSELEQTRNTLKSMEGSDG 723
|
490
....*....|....*
gi 767917649 517 NTLKEASVESEQITA 531
Cdd:pfam15921 724 HAMKVAMGMQKQITA 738
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
212-521 |
1.63e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 44.67 E-value: 1.63e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 212 ELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEdqhnSEIESLQKALGVAREDNRKLAMSLEQalqtnnhLQ 291
Cdd:TIGR02169 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDAS----RKIGEIEKEIEQLEQEEEKLKERLEE-------LE 743
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 292 TKLDHIQEQLESKELERQNLETFKDRMTEE-SKVEAELHAERIEALRKQFQTERETTKKVaQREVAELKKALDEANfrsv 370
Cdd:TIGR02169 744 EDLSSLEQEIENVKSELKELEARIEELEEDlHKLEEALNDLEARLSHSRIPEIQAELSKL-EEEVSRIEARLREIE---- 818
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 371 evsrtnrelrQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKqIEKELKQMELIKDQYQKKNYEQSLSiq 450
Cdd:TIGR02169 819 ----------QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLN-GKKEELEEELEELEAALRDLESRLG-- 885
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767917649 451 rfvcemtNLQKEMQMLaksqydasvrnkqqELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKE 521
Cdd:TIGR02169 886 -------DLKKERDEL--------------EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSE 935
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
231-528 |
2.38e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 2.38e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 231 QQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHlqtKLDHIQEQLESKELERQN 310
Cdd:pfam17380 290 QEKFEKMEQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERER---ELERIRQEERKRELERIR 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 311 -----LETFKDRMTEESKVEAELHAERI----EALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRElrq 381
Cdd:pfam17380 367 qeeiaMEISRMRELERLQMERQQKNERVrqelEAARKVKILEEERQRKIQQQKVEMEQIRAEQEEARQREVRRLEEE--- 443
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 382 KLAELEKILESNKEKiknqktqiklhlsakannAQNIERMKQIEKELKQMELIKDQYQKKNYEQSlSIQRFVCEMTNLQK 461
Cdd:pfam17380 444 RAREMERVRLEEQER------------------QQQVERLRQQEEERKRKKLELEKEKRDRKRAE-EQRRKILEKELEER 504
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 767917649 462 EMQMLAKSQ----YDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVESEQ 528
Cdd:pfam17380 505 KQAMIEEERkrklLEKEMEERQKAIYEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERER 575
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
154-547 |
3.18e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 3.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 154 QKLKEDLEAVEDRENKKvgnfqRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQR 233
Cdd:PRK02224 213 SELAELDEEIERYEEQR-----EQARETRDE-------ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEE 280
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 234 VQKLEAEVDQWQARMLVMEDQHNSE----------IESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLES 303
Cdd:PRK02224 281 VRDLRERLEELEEERDDLLAEAGLDdadaeavearREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 304 KELERQNLETfkdrMTEESKVEAELHAERIEALRKQFQTERE------TTKKVAQREVAELKKALDEANFRSVEVSRTNR 377
Cdd:PRK02224 361 LREEAAELES----ELEEAREAVEDRREEIEELEEEIEELRErfgdapVDLGNAEDFLEELREERDELREREAELEATLR 436
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 378 ELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIErmkQIEKELKQMELIKDQYQKKnyeqslsIQRFVcEMT 457
Cdd:PRK02224 437 TARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVE---ELEAELEDLEEEVEEVEER-------LERAE-DLV 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 458 NLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHlkkcKEATENTLKEASVESEQITANLEEAH 537
Cdd:PRK02224 506 EAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEE----KREAAAEAEEEAEEAREEVAELNSKL 581
|
410
....*....|
gi 767917649 538 RWFKHRFDGL 547
Cdd:PRK02224 582 AELKERIESL 591
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
132-502 |
3.43e-04 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 43.88 E-value: 3.43e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 132 LERSKEELSRTV-KCR---NAALKESQKLKEDLEAVEDRENKK---VGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQG 204
Cdd:PRK02224 319 LEDRDEELRDRLeECRvaaQAHNEEAESLREDADDLEERAEELreeAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 205 ALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMED----------QHNSEIESLQKALGVAREDNR 274
Cdd:PRK02224 399 RFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEAlleagkcpecGQPVEGSPHVETIEEDRERVE 478
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 275 KLAMSLEQALQTNNHLQTKLDHIqEQLESKELERQNLETFKDRMTE---ESKVEAELHAERIEALRKQ---FQTERETTK 348
Cdd:PRK02224 479 ELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLEEliaERRETIEEKRERAEELRERaaeLEAEAEEKR 557
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 349 KVAQ----------REVAELKKALDEANFRsVEVSRTNRELRQKLAELEKILESNKEKIKN---QKTQIKLHLSAKAnna 415
Cdd:PRK02224 558 EAAAeaeeeaeearEEVAELNSKLAELKER-IESLERIRTLLAAIADAEDEIERLREKREAlaeLNDERRERLAEKR--- 633
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 416 qniERMKQIEKELKQMELIKDQYQKKNYEQSLS-----IQRFVCEMTNLQKEMQMlaksqydasVRNKQQELhlEAERKI 490
Cdd:PRK02224 634 ---ERKRELEAEFDEARIEEAREDKERAEEYLEqveekLDELREERDDLQAEIGA---------VENELEEL--EELRER 699
|
410
....*....|..
gi 767917649 491 RQELENRCQELE 502
Cdd:PRK02224 700 REALENRVEALE 711
|
|
| MARTX_Nterm |
NF012221 |
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model ... |
202-480 |
3.66e-04 |
|
MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin N-terminal region; This model describes the N-terminal 1900 amino acids of MARTX family multifunctional-autoprocessing repeats-in-toxin holotoxins, which contain both repeat regions that facilitate their entry into eukaryotic target cells, and multiple effector domains.
Pssm-ID: 467957 [Multi-domain] Cd Length: 1848 Bit Score: 43.67 E-value: 3.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 202 MQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQ-----KALGVAREDNRKL 276
Cdd:NF012221 1458 TAGEVIALSFDFARRAGLSTNNGIEVLWNGEVVFASSGDASAWQQKTLKLTAKAGSNRLEFKgtghnDGLGYILDNVVAT 1537
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 277 AMSLEQALQTNNHLqTKLDHIQEQL---ESKELERQNLETFKDRMTEE-SKVEAELHAERIEALRKQFQTERETTKKVAQ 352
Cdd:NF012221 1538 SESSQQADAVSKHA-KQDDAAQNALadkERAEADRQRLEQEKQQQLAAiSGSQSQLESTDQNALETNGQAQRDAILEESR 1616
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 353 ---REVAELKKALDEANFRSVEVSRTNRELRQKLAelEKILESNKEKIKNQktqiKLHLSAKANNA--QNIERMKQIEKE 427
Cdd:NF012221 1617 avtKELTTLAQGLDALDSQATYAGESGDQWRNPFA--GGLLDRVQEQLDDA----KKISGKQLADAkqRHVDNQQKVKDA 1690
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 428 LKQME--LIKDQYQKKNYEQSLSIQRFVCEMTNL-----QKEMQMlAKSQYDASVRNKQQ 480
Cdd:NF012221 1691 VAKSEagVAQGEQNQANAEQDIDDAKADAEKRKDdalakQNEAQQ-AESDANAAANDAQS 1749
|
|
| COG2433 |
COG2433 |
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only]; |
216-391 |
5.64e-04 |
|
Possible nuclease of RNase H fold, RuvC/YqgF family [General function prediction only];
Pssm-ID: 441980 [Multi-domain] Cd Length: 644 Bit Score: 42.92 E-value: 5.64e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 216 RDSEIAGLKKERDLNQQ--RVQ-KLEAEVDQWQARMLVMEDQhnseieSLQKALGVAREDnrKLAMSLEQALQTNNHLQT 292
Cdd:COG2433 335 RDALAAALKAYDAYKNKfeRVEkKVPPDVDRDEVKARVIRGL------SIEEALEELIEK--ELPEEEPEAEREKEHEER 406
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 293 KLDHIQEQLESKELERQNLETFKDRMTEE--------SKVEAELHAERIEAlRKQFQTERETTKKvaQREVAELKKALDE 364
Cdd:COG2433 407 ELTEEEEEIRRLEEQVERLEAEVEELEAEleekderiERLERELSEARSEE-RREIRKDREISRL--DREIERLERELEE 483
|
170 180
....*....|....*....|....*..
gi 767917649 365 ANfrsvevsRTNRELRQKLAELEKILE 391
Cdd:COG2433 484 ER-------ERIEELKRKLERLKELWK 503
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
8-510 |
5.84e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 5.84e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 8 NKTEKEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMAslELQQVTSDYHGLAQQKVEKITESKNKLAYEN 87
Cdd:COG1196 287 QAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELE--ELEEELEELEEELEEAEEELEEAEAELAEAE 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 88 GKLQIKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRtvkcRNAALKESQKLKEDLEAVEDRE 167
Cdd:COG1196 365 EALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER----LEEELEELEEALAELEEEEEEE 440
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 168 NKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQAR 247
Cdd:COG1196 441 EEALEEAAEEEAELEEE-------EEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKAA 513
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 248 MLVmeDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTK-LDHIQEQLESKELERQNLETFKDRMTEESKVEA 326
Cdd:COG1196 514 LLL--AGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEvAAAAIEYLKAAKAGRATFLPLDKIRARAALAAA 591
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 327 ELHAERIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKL 406
Cdd:COG1196 592 LARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELL 671
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 407 HLSAKANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEA 486
Cdd:COG1196 672 AALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLEEE 751
|
490 500
....*....|....*....|....
gi 767917649 487 ERKIRQELENRcQELEETVRHLKK 510
Cdd:COG1196 752 ALEELPEPPDL-EELERELERLER 774
|
|
| GumC |
COG3206 |
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis]; |
215-420 |
7.44e-04 |
|
Exopolysaccharide export protein/domain GumC/Wzc1 [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442439 [Multi-domain] Cd Length: 687 Bit Score: 42.70 E-value: 7.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 215 RRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNseIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKL 294
Cdd:COG3206 165 NLELRREEARKALEFLEEQLPELRKELEEAEAALEEFRQKNG--LVDLSEEAKLLLQQLSELESQLAEARAELAEAEARL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 295 DHIQEQLESKELE-------------RQNLETFKDRMTEESKVEAELH------AERIEALRKQFQTER-------ETTK 348
Cdd:COG3206 243 AALRAQLGSGPDAlpellqspviqqlRAQLAELEAELAELSARYTPNHpdvialRAQIAALRAQLQQEAqrilaslEAEL 322
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767917649 349 KVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEkILESNKEKIKNQKTQIKLHLSAKANNAQNIER 420
Cdd:COG3206 323 EALQAREASLQAQLAQLEARLAELPELEAELRRLEREVE-VARELYESLLQRLEEARLAEALTVGNVRVIDP 393
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
153-390 |
7.52e-04 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 42.90 E-value: 7.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 153 SQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENVLASHSKMQGA-LEKVQIELGRRD---SEIAGLKKERD 228
Cdd:pfam12128 285 SAELNQLLRTLDDQWKEKRDELNGELSAADAAVAKDRSELEALEDQHGAFLDAdIETAAADQEQLPswqSELENLEERLK 364
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 229 LNQQRVQKLEAEvdqWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQT-NNHLQTKLDH-IQEQLESKEL 306
Cdd:pfam12128 365 ALTGKHQDVTAK---YNRRRSKIKEQNNRDIAGIKDKLAKIREARDRQLAVAEDDLQAlESELREQLEAgKLEFNEEEYR 441
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 307 ERQNLETFKDRM-----TEESKVEAELHAERIEALRKQfQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQ 381
Cdd:pfam12128 442 LKSRLGELKLRLnqataTPELLLQLENFDERIERAREE-QEAANAEVERLQSELRQARKRRDQASEALRQASRRLEERQS 520
|
....*....
gi 767917649 382 KLAELEKIL 390
Cdd:pfam12128 521 ALDELELQL 529
|
|
| PRK09039 |
PRK09039 |
peptidoglycan -binding protein; |
273-420 |
7.65e-04 |
|
peptidoglycan -binding protein;
Pssm-ID: 181619 [Multi-domain] Cd Length: 343 Bit Score: 41.88 E-value: 7.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 273 NRKLA-----MSLEQalQTNNHLQTKLDHIQEQLESKELERQNLETFKDrmtEESKVEAELhAERIEALRKQFQTERETT 347
Cdd:PRK09039 59 NSQIAeladlLSLER--QGNQDLQDSVANLRASLSAAEAERSRLQALLA---ELAGAGAAA-EGRAGELAQELDSEKQVS 132
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767917649 348 KKvAQREVAELKKALDEanfrsvevsrtnreLRQKLAELEKILESNKEKIKNQKTQI-----KLHLsAKANNAQNIER 420
Cdd:PRK09039 133 AR-ALAQVELLNQQIAA--------------LRRQLAALEAALDASEKRDRESQAKIadlgrRLNV-ALAQRVQELNR 194
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
225-406 |
8.66e-04 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 42.45 E-value: 8.66e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 225 KERDLNQQRVQKLEAEVDQWQArMLVMEDQHNSEIESLQKALGVAREDNRKL--AMSLEQALQTNNHLQTKLDHIQEQLE 302
Cdd:COG4717 71 KELKELEEELKEAEEKEEEYAE-LQEELEELEEELEELEAELEELREELEKLekLLQLLPLYQELEALEAELAELPERLE 149
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 303 SKELERQNLETFKDRMTEESKVEAELHAErIEALRKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQK 382
Cdd:COG4717 150 ELEERLEELRELEEELEELEAELAELQEE-LEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180
....*....|....*....|....
gi 767917649 383 LAELEKILESNKEKIKNQKTQIKL 406
Cdd:COG4717 229 LEQLENELEAAALEERLKEARLLL 252
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
150-440 |
1.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 1.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 150 LKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDL 229
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEK-------LEELRLEVSELEEEIEELQKELYALANEISRLEQQKQI 306
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 230 NQQRVQKLEAEVDQWQARMlvmeDQHNSEIESLQKALGVAREdnrKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQ 309
Cdd:TIGR02168 307 LRERLANLERQLEELEAQL----EELESKLDELAEELAELEE---KLEELKEELESLEAELEELEAELEELESRLEELEE 379
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 310 NLETFKDRMTEESKVEAELHAERIEALRKQFQTERETTKkvAQREVAELKKALDEANFRsvEVSRTNRELRQKLAELEKI 389
Cdd:TIGR02168 380 QLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRER--LQQEIEELLKKLEEAELK--ELQAELEELEEELEELQEE 455
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 767917649 390 LESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIKDQYQK 440
Cdd:TIGR02168 456 LERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSE 506
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
13-254 |
1.29e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.97 E-value: 1.29e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 13 EIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQV-TSDYHGLAQQKVEKITESKNKLAYENGKLQ 91
Cdd:TIGR02168 271 ELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEeLEAQLEELESKLDELAEELAELEEKLEELK 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 92 IKVKQLEEQVQSFtdtslqndhlRKMNKYLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKV 171
Cdd:TIGR02168 351 EELESLEAELEEL----------EAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 172 GNFQRQLAEAKEDNckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVM 251
Cdd:TIGR02168 421 QEIEELLKKLEEAE------LKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSL 494
|
...
gi 767917649 252 EDQ 254
Cdd:TIGR02168 495 ERL 497
|
|
| PLN02939 |
PLN02939 |
transferase, transferring glycosyl groups |
16-357 |
1.37e-03 |
|
transferase, transferring glycosyl groups
Pssm-ID: 215507 [Multi-domain] Cd Length: 977 Bit Score: 41.81 E-value: 1.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 16 QERCNLEKELAKNKVDINT-LTHNLQTLEEENKHLADQMASLELQQVTSDYH--GLAQQKVEKITESKNK-LAYENGKLQ 91
Cdd:PLN02939 45 QQKKKRGKNIAPKQRSSNSkLQSNTDENGQLENTSLRTVMELPQKSTSSDDDhnRASMQRDEAIAAIDNEqQTNSKDGEQ 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 92 IKVKQLEEQVQSFTDTSlqnDHLRKMNKYLQTKYAQVKSILeRSKEELSRTVKC-------RNAALKESQKLKEDLEAVE 164
Cdd:PLN02939 125 LSDFQLEDLVGMIQNAE---KNILLLNQARLQALEDLEKIL-TEKEALQGKINIlemrlseTDARIKLAAQEKIHVEILE 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 165 DRENKKVGNFQRQLAEAKEDNCKV-----TIMLENVLAShSKMQgALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEA 239
Cdd:PLN02939 201 EQLEKLRNELLIRGATEGLCVHSLskeldVLKEENMLLK-DDIQ-FLKAELIEVAETEERVFKLEKERSLLDASLRELES 278
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 240 EVDQWQARMLVME----DQHNSEIESLQKALGVAREDNRKLAMSLEQalqtNNHLQTKLDHIQEQLESK----------E 305
Cdd:PLN02939 279 KFIVAQEDVSKLSplqyDCWWEKVENLQDLLDRATNQVEKAALVLDQ----NQDLRDKVDKLEASLKEAnvskfssykvE 354
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*
gi 767917649 306 LERQNLETFKDRM---TEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAE 357
Cdd:PLN02939 355 LLQQKLKLLEERLqasDHEIHSYIQLYQESIKEFQDTLSKLKEESKKRSLEHPAD 409
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
12-525 |
1.58e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.58 E-value: 1.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 12 KEIVQERCNLEKELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTsdyhglAQQKVEKITESKNKLayeNGKLQ 91
Cdd:TIGR02168 235 EELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE------LQKELYALANEISRL---EQQKQ 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 92 IKVKQLEEQVQSFTDTSLQNDHLRKMNKYLQTKYAQVKSILERSKEELSRTvkcrNAALKESQKLKEDLEAVEDRENKKV 171
Cdd:TIGR02168 306 ILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESL----EAELEELEAELEELESRLEELEEQL 381
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 172 GNFQRQLAEAKEDnckvtimlenvlashskmqgaLEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLVM 251
Cdd:TIGR02168 382 ETLRSKVAQLELQ---------------------IASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQA 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 252 E-DQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETF---------------- 314
Cdd:TIGR02168 441 ElEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFsegvkallknqsglsg 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 315 -KDRMTEESKVEAELHAERIEALRKQFQTERETTKKVAQREVAELKK---------ALDEANFRSVEVSRTNR------- 377
Cdd:TIGR02168 521 iLGVLSELISVDEGYEAAIEAALGGRLQAVVVENLNAAKKAIAFLKQnelgrvtflPLDSIKGTEIQGNDREIlkniegf 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 378 -----ELRQKLAELEKILE------------------------------------------------------SNKEKIK 398
Cdd:TIGR02168 601 lgvakDLVKFDPKLRKALSyllggvlvvddldnalelakklrpgyrivtldgdlvrpggvitggsaktnssilERRREIE 680
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 399 NQKTQIKLHLSAKANNAQNIERMK----QIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDAS 474
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRkeleELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760
|
570 580 590 600 610
....*....|....*....|....*....|....*....|....*....|.
gi 767917649 475 VRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEATENTLKEASVE 525
Cdd:TIGR02168 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE 811
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
203-360 |
2.03e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 2.03e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 203 QGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARMLvmeDQHNSEIESLQKALGVAREDNRKLAMSLEQ 282
Cdd:COG4913 287 QRRLELLEAELEELRAELARLEAELERLEARLDALREELDELEAQIR---GNGGDRLEQLEREIERLERELEERERRRAR 363
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 767917649 283 ALQTNNHLQTKLDHIQEQLESkelERQNLETFKDRMTEEskvEAELHAERIEALRKQFQTEREttKKVAQREVAELKK 360
Cdd:COG4913 364 LEALLAALGLPLPASAEEFAA---LRAEAAALLEALEEE---LEALEEALAEAEAALRDLRRE--LRELEAEIASLER 433
|
|
| ClpA |
COG0542 |
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein ... |
292-390 |
2.58e-03 |
|
ATP-dependent Clp protease, ATP-binding subunit ClpA [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440308 [Multi-domain] Cd Length: 836 Bit Score: 40.84 E-value: 2.58e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 292 TKLDHIQEQLESKELERQNLETFKDRMTEE--SKVEAELHA--ERIEALRKQFQTEREttkkvAQREVAELKKALDEANF 367
Cdd:COG0542 411 EELDELERRLEQLEIEKEALKKEQDEASFErlAELRDELAEleEELEALKARWEAEKE-----LIEEIQELKEELEQRYG 485
|
90 100
....*....|....*....|...
gi 767917649 368 RSVEVSRTNRELRQKLAELEKIL 390
Cdd:COG0542 486 KIPELEKELAELEEELAELAPLL 508
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
272-430 |
3.63e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 3.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 272 DNRKLAMSLEQALQTnnhLQTKLDHIQEQLESKELERQNLETFKD-----RMTEESKVEAELHAERIEALRKQFQTERET 346
Cdd:COG4913 607 DNRAKLAALEAELAE---LEEELAEAEERLEALEAELDALQERREalqrlAEYSWDEIDVASAEREIAELEAELERLDAS 683
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 347 TKKVA--QREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKI----KNQKTQIKLHLSAKANNAQNIER 420
Cdd:COG4913 684 SDDLAalEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRLeaaeDLARLELRALLEERFAAALGDAV 763
|
170
....*....|
gi 767917649 421 MKQIEKELKQ 430
Cdd:COG4913 764 ERELRENLEE 773
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
224-573 |
4.07e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 40.49 E-value: 4.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 224 KKERDLNQQRVQKLEAEVDQWQARMLVMEDQHNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKL--------- 294
Cdd:pfam15921 309 RNQNSMYMRQLSDLESTVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDDQLqklladlhk 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 295 --------------------------DHIQEQLESKELERQNLETFKDRMTEESKVEAELHA----------ERIEALRK 338
Cdd:pfam15921 389 rekelslekeqnkrlwdrdtgnsitiDHLRRELDDRNMEVQRLEALLKAMKSECQGQMERQMaaiqgkneslEKVSSLTA 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 339 QFQTERETTKKVAQrEVAELKKALDEAnfrsvevSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNI 418
Cdd:pfam15921 469 QLESTKEMLRKVVE-ELTAKKMTLESS-------ERTVSDLTASLQEKERAIEATNAEITKLRSRVDLKLQELQHLKNEG 540
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 419 ERMKQIEKELKQMELI---KDQYQKKNYEQSLSIQRFVCEMTNLQKEMQmLAKSQYDASVRNKQQELHL------EAERK 489
Cdd:pfam15921 541 DHLRNVQTECEALKLQmaeKDKVIEILRQQIENMTQLVGQHGRTAGAMQ-VEKAQLEKEINDRRLELQEfkilkdKKDAK 619
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 490 IRqELENRCQELE--------------ETVRHLKKCKEATENTLKEASVESEQITANLEEAHRWFKHRFDGLQLELTKNR 555
Cdd:pfam15921 620 IR-ELEARVSDLElekvklvnagserlRAVKDIKQERDQLLNEVKTSRNELNSLSEDYEVLKRNFRNKSEEMETTTNKLK 698
|
410
....*....|....*...
gi 767917649 556 LQRPSGEDRWQEKDQDVK 573
Cdd:pfam15921 699 MQLKSAQSELEQTRNTLK 716
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
24-545 |
4.63e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.12 E-value: 4.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 24 ELAKNKVDINTLTHNLQTLEEENKHLADQMASLELQQVTSDYHGLAQQKVEKITESKNKLayENGKLQIKVKQLEEQVQS 103
Cdd:PTZ00121 1381 DAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKA--EEAKKADEAKKKAEEAKK 1458
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 104 FTDTSLQNDHLRKMNKyLQTKYAQVKSILERSKEELSRTVKCRNAALKESQKLKEDlEAVEDRENKKVGNFQRQLAEAKE 183
Cdd:PTZ00121 1459 AEEAKKKAEEAKKADE-AKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKAD-EAKKAEEAKKADEAKKAEEAKKA 1536
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 184 DNCKVT--IMLENVLASHSKMQGALEKVQIELGRRDSEiaglkkERDLNQQRVQKL-EAEVDQWQARMLVMEDQHNSEIE 260
Cdd:PTZ00121 1537 DEAKKAeeKKKADELKKAEELKKAEEKKKAEEAKKAEE------DKNMALRKAEEAkKAEEARIEEVMKLYEEEKKMKAE 1610
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 261 SLQKAlgvarEDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRMTEESKvEAELHAERIEALRKQF 340
Cdd:PTZ00121 1611 EAKKA-----EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK-KAEEDKKKAEEAKKAE 1684
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 341 QTERETTKKVaQREVAELKKAldeanfrsVEVSRTNRELRQKLAELEKILESNKEKIKNQKtqiklhlsakannaqnier 420
Cdd:PTZ00121 1685 EDEKKAAEAL-KKEAEEAKKA--------EELKKKEAEEKKKAEELKKAEEENKIKAEEAK------------------- 1736
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 421 mKQIEKELKQMELIKDQYQKKNyeqslSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQE 500
Cdd:PTZ00121 1737 -KEAEEDKKKAEEAKKDEEEKK-----KIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIFDNFANI 1810
|
490 500 510 520
....*....|....*....|....*....|....*....|....*...
gi 767917649 501 LE---ETVRHLKKCKEATENTLKEASVESEQItanLEEAHRWFKHRFD 545
Cdd:PTZ00121 1811 IEggkEGNLVINDSKEMEDSAIKEVADSKNMQ---LEEADAFEKHKFN 1855
|
|
| Myosin_tail_1 |
pfam01576 |
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and ... |
38-540 |
5.00e-03 |
|
Myosin tail; The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament.
Pssm-ID: 460256 [Multi-domain] Cd Length: 1081 Bit Score: 40.16 E-value: 5.00e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 38 NLQTLEEENKHLADQMASLELQQVTSDyhglaqQKVEKITESKNKLAYENGKLQIKVKQLEEQVQSFTDTSLQNDHLRKM 117
Cdd:pfam01576 104 HIQDLEEQLDEEEAARQKLQLEKVTTE------AKIKKLEEDILLLEDQNSKLSKERKLLEERISEFTSNLAEEEEKAKS 177
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 118 NKYLQTKYAQVKSILE--RSKEELSRtvkcrnaalKESQKLKEDLEAVEDRENKKVGNFQRQLAEAKEDNCKVTIMLENV 195
Cdd:pfam01576 178 LSKLKNKHEAMISDLEerLKKEEKGR---------QELEKAKRKLEGESTDLQEQIAELQAQIAELRAQLAKKEEELQAA 248
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 196 LASHSKMQGALEKVQIELGRRDSEIAGLKKerDLNQQRVQKLEAEV------DQWQARMLVMED-------------QHN 256
Cdd:pfam01576 249 LARLEEETAQKNNALKKIRELEAQISELQE--DLESERAARNKAEKqrrdlgEELEALKTELEDtldttaaqqelrsKRE 326
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 257 SEIESLQKALgvaREDNRKLAMSLEQALQTNNhlqTKLDHIQEQLESKELERQNLETFKDRMTEESkveAELHAERieAL 336
Cdd:pfam01576 327 QEVTELKKAL---EEETRSHEAQLQEMRQKHT---QALEELTEQLEQAKRNKANLEKAKQALESEN---AELQAEL--RT 395
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 337 RKQFQTERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEK-IKNQK--TQIKLHLSAKAN 413
Cdd:pfam01576 396 LQQAKQDSEHKRKKLEGQLQELQARLSESERQRAELAEKLSKLQSELESVSSLLNEAEGKnIKLSKdvSSLESQLQDTQE 475
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 414 NAQNIERMK-QIEKELKQMELIKDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQElhlEAERKIRQ 492
Cdd:pfam01576 476 LLQEETRQKlNLSTRLRQLEDERNSLQEQLEEEEEAKRNVERQLSTLQAQLSDMKKKLEEDAGTLEALE---EGKKRLQR 552
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....
gi 767917649 493 ELENRCQELEE---TVRHLKKCKEATENTLKEASVE---SEQITANLEEAHRWF 540
Cdd:pfam01576 553 ELEALTQQLEEkaaAYDKLEKTKNRLQQELDDLLVDldhQRQLVSNLEKKQKKF 606
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
351-561 |
5.10e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 5.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 351 AQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQ 430
Cdd:COG4942 25 AEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 431 M--ELIKDQYQKKNY---------EQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQ 499
Cdd:COG4942 105 ElaELLRALYRLGRQpplalllspEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 767917649 500 ELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHRWFKHRFDGLQLELTKNRLQRPSG 561
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAEAAAAAERTPAA 246
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
325-503 |
5.56e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 39.36 E-value: 5.56e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 325 EAELHA--ERIEALRKQFQtERETTKKVAQREVAELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKT 402
Cdd:COG4942 26 EAELEQlqQEIAELEKELA-ALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAELEAQKE 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 403 QIKLHLSA-----------------------------KANNAQNIERMKQIEKELKQMELIKDQYQKKNYEQSLSIQRFV 453
Cdd:COG4942 105 ELAELLRAlyrlgrqpplalllspedfldavrrlqylKYLAPARREQAEELRADLAELAALRAELEAERAELEALLAELE 184
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 767917649 454 CEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEE 503
Cdd:COG4942 185 EERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEA 234
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
211-392 |
5.66e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 38.75 E-value: 5.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 211 IELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQARmlvmedqhnseIESLQKALGVAREDNRKLAMSLEQALQTNNHL 290
Cdd:COG1579 10 LDLQELDSELDRLEHRLKELPAELAELEDELAALEAR-----------LEAAKTELEDLEKEIKRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 291 QTKLDHIQEQLESKELERQnLETFKDRMTEESKVEAELHaERIEALRKQFQTERETTKKvAQREVAELKKALDEanfrsv 370
Cdd:COG1579 79 EEQLGNVRNNKEYEALQKE-IESLKRRISDLEDEILELM-ERIEELEEELAELEAELAE-LEAELEEKKAELDE------ 149
|
170 180
....*....|....*....|..
gi 767917649 371 EVSRTNRELRQKLAELEKILES 392
Cdd:COG1579 150 ELAELEAELEELEAEREELAAK 171
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
290-530 |
6.72e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.68 E-value: 6.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 290 LQTKLDHIQEQLESKELERQNLETFKD--RMTEESKVEAELHAERIEaLRKQFQTERETTKKVAQREVAELKKALDEANF 367
Cdd:COG5022 864 LKKETIYLQSAQRVELAERQLQELKIDvkSISSLKLVNLELESEIIE-LKKSLSSDLIENLEFKTELIARLKKLLNNIDL 942
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 368 ------------RSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIklhlsakannaQNIERMKQIEKElkqmelIK 435
Cdd:COG5022 943 eegpsieyvklpELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKAN-----------SELKNFKKELAE------LS 1005
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 436 DQYQKKNYEQSLSIQRFVcEMTNLQKEMQMLAKSQYDASVRNKQQEL---HLEAERKIRQELENRCQELEETVRHLKKCK 512
Cdd:COG5022 1006 KQYGALQESTKQLKELPV-EVAELQSASKIISSESTELSILKPLQKLkglLLLENNQLQARYKALKLRRENSLLDDKQLY 1084
|
250 260
....*....|....*....|
gi 767917649 513 --EATENTLKEASVESEQIT 530
Cdd:COG5022 1085 qlESTENLLKTINVKDLEVT 1104
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
288-564 |
7.09e-03 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 39.64 E-value: 7.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 288 NHLQTKLDHIQEQLESKELER----QNLETFKDRMT--EESKVEAELHAERIEALRKQFqTERETTKKVAQREVAELKKA 361
Cdd:PRK02224 209 NGLESELAELDEEIERYEEQReqarETRDEADEVLEehEERREELETLEAEIEDLRETI-AETEREREELAEEVRDLRER 287
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 362 LDEANFR------SVEVSRTNRE-LRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMeli 434
Cdd:PRK02224 288 LEELEEErddllaEAGLDDADAEaVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREE--- 364
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 435 KDQYQKKNYEQSLSIQRFVCEMTNLQKEMQMLAKSQYDASVRNKQQELHLEAERKIRQELENRCQELEETVRHLKKCKEA 514
Cdd:PRK02224 365 AAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEE 444
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 767917649 515 TENTLKEA-------SVESEQITANLEEAhrwfKHRFDGLQLELTKNRLQRPSGEDR 564
Cdd:PRK02224 445 AEALLEAGkcpecgqPVEGSPHVETIEED----RERVEELEAELEDLEEEVEEVEER 497
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
288-536 |
7.10e-03 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 39.67 E-value: 7.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 288 NHLQTKLDHIQEQLESKELERQNLEtfkdRMTEESKVEAELHAERIEALRKQfQTERETTKKVAQREVAELKKALDEANF 367
Cdd:TIGR02169 691 SSLQSELRRIENRLDELSQELSDAS----RKIGEIEKEIEQLEQEEEKLKER-LEELEEDLSSLEQEIENVKSELKELEA 765
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 368 RSVEVSRTNRELRQKLAELE-KILESNKEKIKNQKTQIKLHLSakannaQNIERMKQIEKELKQMELIKDQYQKknyeqs 446
Cdd:TIGR02169 766 RIEELEEDLHKLEEALNDLEaRLSHSRIPEIQAELSKLEEEVS------RIEARLREIEQKLNRLTLEKEYLEK------ 833
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 447 lsiqrfvcEMTNLQKEMQMLaKSQyDASVRNKQQELHLEAERKIRQ--ELENRCQELEETVRHLKKCKEATENTLKEASV 524
Cdd:TIGR02169 834 --------EIQELQEQRIDL-KEQ-IKSIEKEIENLNGKKEELEEEleELEAALRDLESRLGDLKKERDELEAQLRELER 903
|
250
....*....|..
gi 767917649 525 ESEQITANLEEA 536
Cdd:TIGR02169 904 KIEELEAQIEKK 915
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
21-546 |
7.16e-03 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 39.37 E-value: 7.16e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 21 LEKELAKNKVDI-----NTLTHNLQTLEEENKHLAdqmaslELQQVTSDYHGLaQQKVEKITESKNKLAYENGKLQIKVK 95
Cdd:COG4717 47 LLERLEKEADELfkpqgRKPELNLKELKELEEELK------EAEEKEEEYAEL-QEELEELEEELEELEAELEELREELE 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 96 QLEEQVQSFTDTSLQNDHLRKMNKyLQTKYAQvksiLERSKEELSRTVKCRNAALKESQKLKEDLEAVEDRENKKVgnfQ 175
Cdd:COG4717 120 KLEKLLQLLPLYQELEALEAELAE-LPERLEE----LEERLEELRELEEELEELEAELAELQEELEELLEQLSLAT---E 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 176 RQLAEAKEDnckvtimLENVLASHSKMQGALEKVQIELGRRDSEIAGLKKERDLNQQRVQKLEAEVDQWQ-ARMLVMEDQ 254
Cdd:COG4717 192 EELQDLAEE-------LEELQQRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLLLLIaAALLALLGL 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 255 HNSEIESLQKALGVAREDNRKLAMSLEQALQTNNHLQTKLDHIQEQLESKELERQNLETFKDRM---TEESKVEAELHAE 331
Cdd:COG4717 265 GGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQALPALEELEEEELEELLAALglpPDLSPEELLELLD 344
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 332 RIEALRKQFQTERETTKKVAQREV-AELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIkLHLSA 410
Cdd:COG4717 345 RIEELQELLREAEELEEELQLEELeQEIAALLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGEL-EELLE 423
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 411 KANNAQNIERMKQIEKELKQMELIKDQYQKknyeqslsiqrfvcEMTNLQKEMQMLAKsqyDASVRNKQQElhleaerki 490
Cdd:COG4717 424 ALDEEELEEELEELEEELEELEEELEELRE--------------ELAELEAELEQLEE---DGELAELLQE--------- 477
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*.
gi 767917649 491 RQELENRCQELEETVRHLKKCKEATENTLKEAsvESEQITANLEEAHRWFKHRFDG 546
Cdd:COG4717 478 LEELKAELRELAEEWAALKLALELLEEAREEY--REERLPPVLERASEYFSRLTDG 531
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
3-435 |
9.69e-03 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 39.29 E-value: 9.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 3 YLCSVNKTEKEIVQERC---NLEKELA-KNKVDINTLTHNLQTLE----EENKHLADQMAS--LELQQVTSDYhglaQQK 72
Cdd:COG5022 815 YLACIIKLQKTIKREKKlreTEEVEFSlKAEVLIQKFGRSLKAKKrfslLKKETIYLQSAQrvELAERQLQEL----KID 890
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 73 VEKITESKNKlayeNGKLQIKVKQLEEQVQS--FTDTSLQNDHLRKMNKYLQTkyAQVKSILERSKEELSRTVKCR--NA 148
Cdd:COG5022 891 VKSISSLKLV----NLELESEIIELKKSLSSdlIENLEFKTELIARLKKLLNN--IDLEEGPSIEYVKLPELNKLHevES 964
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 149 ALKESQKLKEDL----EAVEDRENK---KVGNFQRQLAEAKEDNCKvtimLENVLASHSKMQGALEKVQIELGRRDSEIA 221
Cdd:COG5022 965 KLKETSEEYEDLlkksTILVREGNKansELKNFKKELAELSKQYGA----LQESTKQLKELPVEVAELQSASKIISSEST 1040
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 222 GLKKERDLnQQRVQKLEAEVDQWQARMLVM----EDQHNSE--------IESLQKALGVARED-NRKLAMSLEQALQTNN 288
Cdd:COG5022 1041 ELSILKPL-QKLKGLLLLENNQLQARYKALklrrENSLLDDkqlyqlesTENLLKTINVKDLEvTNRNLVKPANVLQFIV 1119
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 289 HLQTKLDHIQEQ----------LESKELERQNLETFKDRMTEESKVEAELHAERIEALRKQ---FQTERETTKKVAQREV 355
Cdd:COG5022 1120 AQMIKLNLLQEIskflsqlvntLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFAALSEKrlyQSALYDEKSKLSSSEV 1199
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 767917649 356 AELKKALDEANFRSVEVSRTNRELRQKLAELEKILESNKEKIKNQKTQIKLHLSAKANNAQNIERMKQIEKELKQMELIK 435
Cdd:COG5022 1200 NDLKNELIALFSKIFSGWPRGDKLKKLISEGWVPTEYSTSLKGFNNLNKKFDTPASMSNEKLLSLLNSIDNLLSSYKLEE 1279
|
|
| |
